BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10835
(80 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242021065|ref|XP_002430967.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212516187|gb|EEB18229.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 79
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|110749924|ref|XP_001121733.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Apis
mellifera]
gi|350419231|ref|XP_003492114.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Bombus
impatiens]
gi|380023576|ref|XP_003695594.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Apis
florea]
gi|383861934|ref|XP_003706439.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Megachile rotundata]
Length = 79
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLK+KYG
Sbjct: 1 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|156550741|ref|XP_001606104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Nasonia
vitripennis]
Length = 80
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLK+KYG
Sbjct: 1 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|332023213|gb|EGI63469.1| U6 snRNA-associated Sm-like protein LSm6 [Acromyrmex echinatior]
Length = 608
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+C+DGYMNIALEQTEEY+NGQLK+KYG
Sbjct: 530 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYG 589
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 590 DAFIRGNNVLYISTQKRR 607
>gi|307195205|gb|EFN77189.1| U6 snRNA-associated Sm-like protein LSm6 [Harpegnathos saltator]
Length = 79
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLK+KYG
Sbjct: 1 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|357625163|gb|EHJ75691.1| putative membrane-associated protein [Danaus plexippus]
Length = 79
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LS FIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|328697100|ref|XP_003240231.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Acyrthosiphon pisum]
gi|328697102|ref|XP_003240232.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Acyrthosiphon pisum]
Length = 80
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 79/80 (98%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+L+QFIQQIHGRPVVVKL SGVDYRGV++C+DGYMNIALEQTEEYING+LKNK+G
Sbjct: 1 MSRKEALTQFIQQIHGRPVVVKLNSGVDYRGVMACIDGYMNIALEQTEEYINGELKNKFG 60
Query: 61 DTFIRGNNVLYISTQKRRGV 80
D+FIRGNNVLYISTQKR+GV
Sbjct: 61 DSFIRGNNVLYISTQKRKGV 80
>gi|307184080|gb|EFN70615.1| U6 snRNA-associated Sm-like protein LSm6 [Camponotus floridanus]
Length = 79
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 76/78 (97%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFIQQIHGRPVVVKL SGVDYRGVL+C+DGYMNIALEQTEEY+NGQLK+KYG
Sbjct: 1 MSRKEALSQFIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|58387098|ref|XP_315329.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|170059581|ref|XP_001865425.1| Lsm6 protein [Culex quinquefasciatus]
gi|55238130|gb|EAA11294.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|167878291|gb|EDS41674.1| Lsm6 protein [Culex quinquefasciatus]
gi|312381097|gb|EFR26918.1| hypothetical protein AND_25803 [Anopheles darlingi]
gi|403182446|gb|EJY57393.1| AAEL017161-PA [Aedes aegypti]
Length = 79
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFI QIHGRPVVVKL SGVDYRGVL+CLDGYMNIAL+QTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSQFINQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|91082305|ref|XP_974175.1| PREDICTED: similar to AGAP005314-PA [Tribolium castaneum]
gi|270007198|gb|EFA03646.1| hypothetical protein TcasGA2_TC013740 [Tribolium castaneum]
Length = 79
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/78 (89%), Positives = 74/78 (94%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LS FIQQIH RPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNK+G
Sbjct: 1 MSRKEALSSFIQQIHARPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKFG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|195029477|ref|XP_001987599.1| GH22008 [Drosophila grimshawi]
gi|195119462|ref|XP_002004250.1| GI19714 [Drosophila mojavensis]
gi|195401621|ref|XP_002059411.1| GJ17501 [Drosophila virilis]
gi|193903599|gb|EDW02466.1| GH22008 [Drosophila grimshawi]
gi|193909318|gb|EDW08185.1| GI19714 [Drosophila mojavensis]
gi|194142417|gb|EDW58823.1| GJ17501 [Drosophila virilis]
Length = 79
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/78 (88%), Positives = 74/78 (94%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFI QIHGRPV VKL +GVDYRGVL+CLDGYMNIAL+QTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|149898865|gb|ABR27921.1| small ribonuclear protein [Triatoma infestans]
Length = 80
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/78 (88%), Positives = 74/78 (94%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE L+QFIQQIHGRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLK KYG
Sbjct: 1 MSRKEPLTQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKEKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D F+RGNNVLYIS+QKRR
Sbjct: 61 DAFLRGNNVLYISSQKRR 78
>gi|24656550|ref|NP_611528.1| CG9344 [Drosophila melanogaster]
gi|125810771|ref|XP_001361619.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|194753682|ref|XP_001959139.1| GF12211 [Drosophila ananassae]
gi|194881738|ref|XP_001974978.1| GG22072 [Drosophila erecta]
gi|195154152|ref|XP_002017986.1| GL17007 [Drosophila persimilis]
gi|195346251|ref|XP_002039679.1| GM15790 [Drosophila sechellia]
gi|195456011|ref|XP_002074964.1| GK23338 [Drosophila willistoni]
gi|195486699|ref|XP_002091616.1| GE12153 [Drosophila yakuba]
gi|195585248|ref|XP_002082401.1| GD11551 [Drosophila simulans]
gi|7291213|gb|AAF46645.1| CG9344 [Drosophila melanogaster]
gi|21064499|gb|AAM29479.1| RE43665p [Drosophila melanogaster]
gi|38048229|gb|AAR10017.1| similar to Drosophila melanogaster CG9344, partial [Drosophila
yakuba]
gi|54636795|gb|EAL26198.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|190620437|gb|EDV35961.1| GF12211 [Drosophila ananassae]
gi|190658165|gb|EDV55378.1| GG22072 [Drosophila erecta]
gi|194113782|gb|EDW35825.1| GL17007 [Drosophila persimilis]
gi|194135028|gb|EDW56544.1| GM15790 [Drosophila sechellia]
gi|194171049|gb|EDW85950.1| GK23338 [Drosophila willistoni]
gi|194177717|gb|EDW91328.1| GE12153 [Drosophila yakuba]
gi|194194410|gb|EDX07986.1| GD11551 [Drosophila simulans]
gi|220950784|gb|ACL87935.1| CG9344-PA [synthetic construct]
gi|220959486|gb|ACL92286.1| CG9344-PA [synthetic construct]
Length = 79
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/78 (88%), Positives = 73/78 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFI QIHGRPV VKL +GVDYRGVL+CLDGYMNI LEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|405968315|gb|EKC33396.1| Nucleolar protein 6 [Crassostrea gigas]
Length = 1150
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/79 (84%), Positives = 74/79 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S+F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1072 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 1131
Query: 61 DTFIRGNNVLYISTQKRRG 79
D FIRGNNVLYISTQKRR
Sbjct: 1132 DAFIRGNNVLYISTQKRRA 1150
>gi|405968751|gb|EKC33791.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas]
Length = 79
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 74/79 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S+F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRRG 79
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRRA 79
>gi|198429171|ref|XP_002120650.1| PREDICTED: similar to conserved hypothetical protein [Ciona
intestinalis]
Length = 82
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 75/80 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S+F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRRGV 80
D FIRGNNV YISTQKR+G+
Sbjct: 61 DAFIRGNNVFYISTQKRKGL 80
>gi|291225628|ref|XP_002732802.1| PREDICTED: Sm protein F-like [Saccoglossus kowalevskii]
Length = 79
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/78 (84%), Positives = 73/78 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKR+
Sbjct: 61 DAFIRGNNVLYISTQKRK 78
>gi|346470245|gb|AEO34967.1| hypothetical protein [Amblyomma maculatum]
gi|427785925|gb|JAA58414.1| Putative small nuclear ribonucleoprotein f [Rhipicephalus
pulchellus]
gi|442749057|gb|JAA66688.1| Putative small nuclear ribonucleoprotein f [Ixodes ricinus]
Length = 79
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 74/78 (94%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSR+++ S+F++QI GRPVVVKL SG+DYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRRQTPSEFLKQIIGRPVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>gi|443703278|gb|ELU00915.1| hypothetical protein CAPTEDRAFT_152822 [Capitella teleta]
Length = 79
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S F++QI GR VVVKL SGVDYRGVL+CLDGYMNIALE TEEY+NGQLKNKYG
Sbjct: 1 MSRKQTPSDFLKQIIGRTVVVKLNSGVDYRGVLACLDGYMNIALEHTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRRG 79
D FIRGNNVLYISTQKRRG
Sbjct: 61 DAFIRGNNVLYISTQKRRG 79
>gi|403272388|ref|XP_003928047.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Saimiri
boliviensis boliviensis]
Length = 114
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 38 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 97
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 98 FIRGNNVLYISTQKRR 113
>gi|260791583|ref|XP_002590808.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
gi|229276005|gb|EEN46819.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
Length = 81
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQK 76
D FIRGNNVLYISTQK
Sbjct: 61 DAFIRGNNVLYISTQK 76
>gi|5901998|ref|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|148234781|ref|NP_001087318.1| Sm protein F [Xenopus laevis]
gi|167583548|ref|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bos taurus]
gi|186910275|ref|NP_001119557.1| U6 snRNA-associated Sm-like protein LSm6 [Rattus norvegicus]
gi|284172395|ref|NP_001165068.1| Sm protein F [Xenopus (Silurana) tropicalis]
gi|300797601|ref|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|350536543|ref|NP_001232484.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|388454641|ref|NP_001253894.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|118089868|ref|XP_420431.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gallus gallus]
gi|149637763|ref|XP_001510547.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
gi|291401158|ref|XP_002716966.1| PREDICTED: Sm protein F [Oryctolagus cuniculus]
gi|293352714|ref|XP_002728048.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|296195455|ref|XP_002745354.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Callithrix jacchus]
gi|297674437|ref|XP_002815234.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pongo
abelii]
gi|301761728|ref|XP_002916283.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Ailuropoda melanoleuca]
gi|301761730|ref|XP_002916284.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Ailuropoda melanoleuca]
gi|326918386|ref|XP_003205470.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Meleagris gallopavo]
gi|327273948|ref|XP_003221741.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Anolis
carolinensis]
gi|332217354|ref|XP_003257824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Nomascus leucogenys]
gi|332217356|ref|XP_003257825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Nomascus leucogenys]
gi|332217358|ref|XP_003257826.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Nomascus leucogenys]
gi|332820272|ref|XP_003310523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Pan troglodytes]
gi|332820274|ref|XP_003339112.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|332820276|ref|XP_003310524.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Pan troglodytes]
gi|332820278|ref|XP_003310526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Pan troglodytes]
gi|332820280|ref|XP_003310527.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Pan troglodytes]
gi|335293789|ref|XP_003357054.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Sus
scrofa]
gi|338722510|ref|XP_003364554.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Equus
caballus]
gi|344291754|ref|XP_003417595.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Loxodonta africana]
gi|345781166|ref|XP_855162.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Canis lupus familiaris]
gi|345781168|ref|XP_003432092.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Canis lupus familiaris]
gi|348582250|ref|XP_003476889.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cavia
porcellus]
gi|354477192|ref|XP_003500806.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Cricetulus griseus]
gi|390460377|ref|XP_003732476.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Callithrix jacchus]
gi|392332759|ref|XP_003752686.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|395542575|ref|XP_003773202.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Sarcophilus
harrisii]
gi|395834523|ref|XP_003790249.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Otolemur
garnettii]
gi|397489777|ref|XP_003815894.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
paniscus]
gi|402870580|ref|XP_003899290.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Papio anubis]
gi|402870582|ref|XP_003899291.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Papio anubis]
gi|410038770|ref|XP_003950473.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410038772|ref|XP_003950474.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410956783|ref|XP_003985017.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Felis catus]
gi|426246981|ref|XP_004017265.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Ovis aries]
gi|426345621|ref|XP_004040503.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Gorilla gorilla gorilla]
gi|426345623|ref|XP_004040504.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gorilla gorilla gorilla]
gi|426345625|ref|XP_004040505.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Gorilla gorilla gorilla]
gi|426345627|ref|XP_004040506.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Gorilla gorilla gorilla]
gi|426345629|ref|XP_004040507.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Gorilla gorilla gorilla]
gi|426345631|ref|XP_004040508.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 6
[Gorilla gorilla gorilla]
gi|441619228|ref|XP_004088560.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Nomascus
leucogenys]
gi|61227727|sp|P62312.1|LSM6_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|61227728|sp|P62313.1|LSM6_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5919153|gb|AAD56230.1|AF182292_1 U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|5262862|emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gi|12859166|dbj|BAB31555.1| unnamed protein product [Mus musculus]
gi|16359118|gb|AAH16026.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|20987896|gb|AAH30427.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|26347205|dbj|BAC37251.1| unnamed protein product [Mus musculus]
gi|51593502|gb|AAH78551.1| MGC85411 protein [Xenopus laevis]
gi|63995242|gb|AAY41032.1| unknown [Homo sapiens]
gi|67514294|gb|AAH98230.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|68534470|gb|AAH99484.1| Lsm6 protein [Mus musculus]
gi|74179952|dbj|BAE36530.1| unnamed protein product [Mus musculus]
gi|74196623|dbj|BAE34418.1| unnamed protein product [Mus musculus]
gi|74202626|dbj|BAE24870.1| unnamed protein product [Mus musculus]
gi|109939818|gb|AAI18349.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|110645766|gb|AAI18890.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|119226360|gb|AAI28976.1| MGC85411 protein [Xenopus laevis]
gi|119625434|gb|EAX05029.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625435|gb|EAX05030.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625436|gb|EAX05031.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123983026|gb|ABM83254.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|148678915|gb|EDL10862.1| mCG7981, isoform CRA_a [Mus musculus]
gi|148678917|gb|EDL10864.1| mCG7981, isoform CRA_a [Mus musculus]
gi|149037959|gb|EDL92319.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037960|gb|EDL92320.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037961|gb|EDL92321.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149058701|gb|EDM09858.1| rCG63582, isoform CRA_b [Rattus norvegicus]
gi|157928024|gb|ABW03308.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|163916395|gb|AAI57145.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|189053256|dbj|BAG35062.1| unnamed protein product [Homo sapiens]
gi|197127464|gb|ACH43962.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|261860094|dbj|BAI46569.1| U6 snRNA-associated Sm-like protein LSm6 [synthetic construct]
gi|296478782|tpg|DAA20897.1| TPA: Sm protein F [Bos taurus]
gi|344244120|gb|EGW00224.1| U6 snRNA-associated Sm-like protein LSm6 [Cricetulus griseus]
gi|351714530|gb|EHB17449.1| U6 snRNA-associated Sm-like protein LSm6 [Heterocephalus glaber]
gi|355687640|gb|EHH26224.1| hypothetical protein EGK_16139 [Macaca mulatta]
gi|355762049|gb|EHH61876.1| hypothetical protein EGM_20027 [Macaca fascicularis]
gi|380783335|gb|AFE63543.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|384945050|gb|AFI36130.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|410287906|gb|JAA22553.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410287908|gb|JAA22554.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410349693|gb|JAA41450.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395471|gb|JAA44792.1| Putative small nuclear ribonucleoprotein f [Desmodus rotundus]
gi|431918291|gb|ELK17518.1| U6 snRNA-associated Sm-like protein LSm6 [Pteropus alecto]
gi|449271295|gb|EMC81755.1| U6 snRNA-associated Sm-like protein LSm6 [Columba livia]
Length = 80
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>gi|355700155|gb|AES01358.1| LSM6-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 86
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 11 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 70
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 71 FIRGNNVLYISTQKRR 86
>gi|387914462|gb|AFK10840.1| U6 snRNA-associated Sm-like protein LSm6 [Callorhinchus milii]
Length = 80
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>gi|391332718|ref|XP_003740777.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Metaseiulus occidentalis]
Length = 79
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 71/78 (91%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+RK S S F++Q+ GRPVVVKL SG+DYRGVLSCLDGYMNIALEQTEEY+NGQLKNKYG
Sbjct: 1 MTRKTSTSDFLKQLVGRPVVVKLNSGLDYRGVLSCLDGYMNIALEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYIST KRR
Sbjct: 61 DAFIRGNNVLYISTVKRR 78
>gi|196014390|ref|XP_002117054.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190580276|gb|EDV20360.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 79
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/78 (80%), Positives = 72/78 (92%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS+K++ S+F++ + GRPVVVKL SGVDYRG+L+CLDGYMNIALEQTEEYINGQLKNKYG
Sbjct: 1 MSKKQTPSEFLKNVIGRPVVVKLNSGVDYRGILTCLDGYMNIALEQTEEYINGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNV YISTQKRR
Sbjct: 61 DAFIRGNNVFYISTQKRR 78
>gi|229367210|gb|ACQ58585.1| U6 snRNA-associated Sm-like protein LSm6 [Anoplopoma fimbria]
Length = 80
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 71/77 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRRG 79
F+RGNNVLYISTQKR+
Sbjct: 64 FLRGNNVLYISTQKRKA 80
>gi|226372462|gb|ACO51856.1| U6 snRNA-associated Sm-like protein LSm6 [Rana catesbeiana]
Length = 80
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 70/76 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F +QI GRPVVV+L SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFWKQIIGRPVVVELNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>gi|393907321|gb|EFO22723.2| U6 snRNA-associated Sm-like protein LSm6 [Loa loa]
Length = 77
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 72/77 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSR+++ S+F++QI G+PVVVKL SGVDYRG+LSCLDG+MNIALEQTEEY NGQLKNKYG
Sbjct: 1 MSRRQNPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYISTQKR
Sbjct: 61 DAFIRGNNVLYISTQKR 77
>gi|432847198|ref|XP_004065979.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Oryzias
latipes]
Length = 80
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGNNVLYISTQKR+
Sbjct: 64 FLRGNNVLYISTQKRK 79
>gi|348524416|ref|XP_003449719.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Oreochromis niloticus]
gi|410917980|ref|XP_003972464.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Takifugu rubripes]
gi|47217355|emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 80
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGNNVLYISTQKR+
Sbjct: 64 FLRGNNVLYISTQKRK 79
>gi|72032500|ref|XP_799246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Strongylocentrotus purpuratus]
Length = 83
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
+RK++ S F++ I GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 7 ARKQTPSDFLKLIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGD 66
Query: 62 TFIRGNNVLYISTQKR 77
FIRGNNVLYISTQKR
Sbjct: 67 AFIRGNNVLYISTQKR 82
>gi|50344808|ref|NP_001002077.1| U6 snRNA-associated Sm-like protein LSm6 [Danio rerio]
gi|48735113|gb|AAH72549.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|182888802|gb|AAI64231.1| Lsm6 protein [Danio rerio]
gi|221219176|gb|ACM08249.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220666|gb|ACM08994.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220672|gb|ACM08997.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221221694|gb|ACM09508.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223646340|gb|ACN09928.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223672187|gb|ACN12275.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|225716604|gb|ACO14148.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGNNVLYISTQKR+
Sbjct: 64 FLRGNNVLYISTQKRK 79
>gi|402590496|gb|EJW84426.1| U6 small ribonucleoprotein F [Wuchereria bancrofti]
Length = 77
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 72/77 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSR+++ S+F++QI G+PVVVKL SG+DYRG+LSCLDG+MNIALEQTEEY NGQLKNKYG
Sbjct: 1 MSRRQNPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYISTQKR
Sbjct: 61 DAFIRGNNVLYISTQKR 77
>gi|440889992|gb|ELR44741.1| U6 snRNA-associated Sm-like protein LSm6 [Bos grunniens mutus]
Length = 80
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKN YGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNTYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FI+GNNVLYISTQKRR
Sbjct: 64 FIQGNNVLYISTQKRR 79
>gi|321461493|gb|EFX72525.1| hypothetical protein DAPPUDRAFT_59069 [Daphnia pulex]
Length = 79
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 72/78 (92%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS +++ ++F++QI GRPVVVKL +GVDYRGVL+CLDGYMNIALEQTEEY NGQLKNKYG
Sbjct: 1 MSARQTPNEFLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVL+ISTQKRR
Sbjct: 61 DAFIRGNNVLFISTQKRR 78
>gi|221220122|gb|ACM08722.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
Length = 80
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 70/76 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGN VLYISTQKR+
Sbjct: 64 FLRGNTVLYISTQKRK 79
>gi|340381514|ref|XP_003389266.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Amphimedon queenslandica]
Length = 80
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRK + + F++QI GRPVVVKL SGVDYRG+L+CLDGYMNIALEQTEEYI GQLKNKYG
Sbjct: 1 MSRKRTPNDFLKQIAGRPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYIGGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQK 76
D FIRGNNVLYIST K
Sbjct: 61 DAFIRGNNVLYISTTK 76
>gi|225716748|gb|ACO14220.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYM+IA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMSIAVEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGNNVLY+STQKR+
Sbjct: 64 FLRGNNVLYVSTQKRK 79
>gi|313231300|emb|CBY08415.1| unnamed protein product [Oikopleura dioica]
Length = 82
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 71/77 (92%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S+K++ S+F+++I G PVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 6 SKKQNPSEFLRKIIGNPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGD 65
Query: 62 TFIRGNNVLYISTQKRR 78
TFIRGNNVLYIST +R
Sbjct: 66 TFIRGNNVLYISTSSKR 82
>gi|296490659|tpg|DAA32772.1| TPA: Sm protein F-like [Bos taurus]
Length = 80
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 68/75 (90%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNI LEQTEEY+NGQLKN YGD F
Sbjct: 5 KQTPSDFLKQITGRPVVVKLNSGVDYRGVLACLDGYMNIVLEQTEEYVNGQLKNTYGDAF 64
Query: 64 IRGNNVLYISTQKRR 78
I+GNNVLYISTQKRR
Sbjct: 65 IQGNNVLYISTQKRR 79
>gi|426232516|ref|XP_004010268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Ovis
aries]
Length = 117
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
+K++ S F++QI G+ VVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 41 QKQTPSNFLKQIIGQSVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 100
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 101 FIRGNNVLYISTQKRR 116
>gi|156358627|ref|XP_001624618.1| predicted protein [Nematostella vectensis]
gi|156211409|gb|EDO32518.1| predicted protein [Nematostella vectensis]
Length = 80
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 70/76 (92%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS+K++ S F++ I GRPVVVKL +GVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYG
Sbjct: 1 MSKKQTPSDFLKLIIGRPVVVKLNNGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQK 76
D FIRGNNVLYISTQ+
Sbjct: 61 DAFIRGNNVLYISTQR 76
>gi|148700925|gb|EDL32872.1| mCG50614 [Mus musculus]
Length = 104
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 68/77 (88%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ + F++QI GRPVVVKL SGV YRGVL CLDGYMNIALEQTEEY+NGQLKNKY D
Sbjct: 4 RKQTPNDFLKQIIGRPVVVKLNSGVGYRGVLVCLDGYMNIALEQTEEYVNGQLKNKYRDA 63
Query: 63 FIRGNNVLYISTQKRRG 79
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRRA 80
>gi|242075544|ref|XP_002447708.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
gi|241938891|gb|EES12036.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
Length = 97
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 79 RGNNVLYISTSKR 91
>gi|339244381|ref|XP_003378116.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316973000|gb|EFV56639.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 327
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 57/79 (72%), Positives = 71/79 (89%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS +++ S+F++Q+ G+PV+VKL SG+DYRG+L+CLDGY+N+ALEQTEEY NGQLK KYG
Sbjct: 249 MSGRQTPSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYG 308
Query: 61 DTFIRGNNVLYISTQKRRG 79
D FIRGNNVLYISTQKRR
Sbjct: 309 DAFIRGNNVLYISTQKRRA 327
>gi|212722680|ref|NP_001131392.1| uncharacterized protein LOC100192719 [Zea mays]
gi|194691404|gb|ACF79786.1| unknown [Zea mays]
gi|195605878|gb|ACG24769.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413918138|gb|AFW58070.1| Small nuclear ribonucleoprotein F [Zea mays]
Length = 95
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 17 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 76
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 77 RGNNVLYISTTKR 89
>gi|115458068|ref|NP_001052634.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|113564205|dbj|BAF14548.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|215693219|dbj|BAG88601.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194749|gb|EEC77176.1| hypothetical protein OsI_15663 [Oryza sativa Indica Group]
gi|222628763|gb|EEE60895.1| hypothetical protein OsJ_14579 [Oryza sativa Japonica Group]
Length = 97
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 79 RGNNVLYISTSKR 91
>gi|357149171|ref|XP_003575024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 98
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 20 KTPSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 79
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 80 RGNNVLYISTSKR 92
>gi|48716974|dbj|BAD23667.1| putative Sm protein F [Oryza sativa Japonica Group]
gi|215765012|dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622927|gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group]
Length = 101
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 23 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 82
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 83 RGNNVLYISTSKR 95
>gi|218190824|gb|EEC73251.1| hypothetical protein OsI_07364 [Oryza sativa Indica Group]
Length = 97
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 79 RGNNVLYISTSKR 91
>gi|115446301|ref|NP_001046930.1| Os02g0510100 [Oryza sativa Japonica Group]
gi|113536461|dbj|BAF08844.1| Os02g0510100, partial [Oryza sativa Japonica Group]
Length = 96
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 18 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 77
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 78 RGNNVLYISTSKR 90
>gi|224098796|ref|XP_002311269.1| predicted protein [Populus trichocarpa]
gi|118483023|gb|ABK93423.1| unknown [Populus trichocarpa]
gi|222851089|gb|EEE88636.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|356568356|ref|XP_003552377.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Glycine
max]
Length = 91
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|225434160|ref|XP_002278412.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis
vinifera]
gi|296084324|emb|CBI24712.3| unnamed protein product [Vitis vinifera]
Length = 91
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|357474665|ref|XP_003607617.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508672|gb|AES89814.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|388502230|gb|AFK39181.1| unknown [Medicago truncatula]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|168005297|ref|XP_001755347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693475|gb|EDQ79827.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 15 KTPADFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 74
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 75 RGNNVLYISTTKR 87
>gi|351721500|ref|NP_001237723.1| uncharacterized protein LOC100306112 [Glycine max]
gi|255627589|gb|ACU14139.1| unknown [Glycine max]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|326504448|dbj|BAJ91056.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511968|dbj|BAJ95965.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517080|dbj|BAJ99906.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 99
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 21 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 80
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 81 RGNNVLYISTSKR 93
>gi|224112373|ref|XP_002316168.1| predicted protein [Populus trichocarpa]
gi|118482915|gb|ABK93371.1| unknown [Populus trichocarpa]
gi|222865208|gb|EEF02339.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|449445280|ref|XP_004140401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
gi|449498381|ref|XP_004160523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
Length = 92
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|388506496|gb|AFK41314.1| unknown [Lotus japonicus]
Length = 90
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 12 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 71
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 72 RGNNVLYISTSKR 84
>gi|255587821|ref|XP_002534408.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223525355|gb|EEF27977.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 91
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTTKR 85
>gi|339244427|ref|XP_003378139.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316972974|gb|EFV56616.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 373
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 57/79 (72%), Positives = 71/79 (89%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS +++ S+F++Q+ G+PV+VKL SG+DYRG+L+CLDGY+N+ALEQTEEY NGQLK KYG
Sbjct: 295 MSGRQTPSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYG 354
Query: 61 DTFIRGNNVLYISTQKRRG 79
D FIRGNNVLYISTQKRR
Sbjct: 355 DAFIRGNNVLYISTQKRRA 373
>gi|116792892|gb|ABK26542.1| unknown [Picea sitchensis]
Length = 91
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
+ ++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 10 TSAKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
Query: 62 TFIRGNNVLYISTQKR 77
FIRGNNVLYIST KR
Sbjct: 70 AFIRGNNVLYISTSKR 85
>gi|116782342|gb|ABK22473.1| unknown [Picea sitchensis]
Length = 91
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST KR
Sbjct: 73 RGNNVLYISTSKR 85
>gi|357163084|ref|XP_003579620.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 97
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST K+
Sbjct: 79 RGNNVLYISTSKQ 91
>gi|302798158|ref|XP_002980839.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
gi|302815369|ref|XP_002989366.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300142944|gb|EFJ09640.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300151378|gb|EFJ18024.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
Length = 87
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 66/73 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 12 KTPTDFLRSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 71
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIST K+
Sbjct: 72 RGNNVLYISTSKK 84
>gi|255078316|ref|XP_002502738.1| predicted protein [Micromonas sp. RCC299]
gi|226518004|gb|ACO63996.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 66/74 (89%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQKRR 78
RGNNVLYIST K +
Sbjct: 73 RGNNVLYISTAKDK 86
>gi|428183531|gb|EKX52389.1| hypothetical protein GUITHDRAFT_157136 [Guillardia theta
CCMP2712]
Length = 84
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K S ++F+ Q+ GRPVVVKL +GVDY+GVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD F
Sbjct: 8 KRSPTEFLSQVTGRPVVVKLNTGVDYKGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 67
Query: 64 IRGNNVLYIST 74
IRGNNVLYIST
Sbjct: 68 IRGNNVLYIST 78
>gi|168041946|ref|XP_001773451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675327|gb|EDQ61824.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 15 KTPNDFLKSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 74
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 75 RGNNVLYISTTK 86
>gi|221121818|ref|XP_002166122.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Hydra
magnipapillata]
Length = 79
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS+++ S F++QI GRPVVVKL SGVDYRGVL LDGYMNI LEQTEEY+NGQLKNKYG
Sbjct: 1 MSQRQDPSDFLKQIIGRPVVVKLNSGVDYRGVLGSLDGYMNIVLEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D F+RGNNVLYIST+K++
Sbjct: 61 DAFLRGNNVLYISTRKQK 78
>gi|308498301|ref|XP_003111337.1| CRE-LSM-6 protein [Caenorhabditis remanei]
gi|308240885|gb|EFO84837.1| CRE-LSM-6 protein [Caenorhabditis remanei]
Length = 77
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 70/77 (90%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS++++ S+F++++ G+PVVVKL SGVDYRG+L+CLDGYMNIALEQTEEY NGQL+NKYG
Sbjct: 1 MSKRQNPSEFLKRVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYIST +
Sbjct: 61 DAFIRGNNVLYISTSTK 77
>gi|297817284|ref|XP_002876525.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
gi|297322363|gb|EFH52784.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 73 RGNNVLYISTVK 84
>gi|17510579|ref|NP_490883.1| Protein LSM-6 [Caenorhabditis elegans]
gi|373219432|emb|CCD67971.1| Protein LSM-6 [Caenorhabditis elegans]
Length = 77
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 70/77 (90%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS++++ ++F++++ G+PVVVKL SGVDYRG+L+CLDGYMNIALEQTEEY NGQL+NKYG
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYIST +
Sbjct: 61 DAFIRGNNVLYISTSTK 77
>gi|297824373|ref|XP_002880069.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
gi|297325908|gb|EFH56328.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 65/72 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD F+
Sbjct: 13 KTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFV 72
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 73 RGNNVLYISTTK 84
>gi|341883036|gb|EGT38971.1| hypothetical protein CAEBREN_02711 [Caenorhabditis brenneri]
gi|341889446|gb|EGT45381.1| hypothetical protein CAEBREN_13550 [Caenorhabditis brenneri]
Length = 77
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 69/77 (89%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS +++ ++F++++ G+PVVVKL SGVDYRG+L+CLDGYMNIALEQTEEY NGQL+NKYG
Sbjct: 1 MSTRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYIST +
Sbjct: 61 DAFIRGNNVLYISTSTK 77
>gi|15232179|ref|NP_191540.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|7019675|emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|27754440|gb|AAO22668.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|28394039|gb|AAO42427.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|332646450|gb|AEE79971.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPVVVKL SGVDYRG L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYIST 74
RGNNVLYIST
Sbjct: 73 RGNNVLYIST 82
>gi|268563747|ref|XP_002638924.1| C. briggsae CBR-LSM-6 protein [Caenorhabditis briggsae]
Length = 77
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 70/77 (90%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+++++ ++F++++ G+PVVVKL SGVDYRG+L+CLDGYMNIALEQTEEY NGQL+NKYG
Sbjct: 1 MNKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYIST +
Sbjct: 61 DAFIRGNNVLYISTSTK 77
>gi|307110699|gb|EFN58935.1| hypothetical protein CHLNCDRAFT_34269 [Chlorella variabilis]
Length = 85
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 65/73 (89%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S ++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 9 SSAKTPADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 68
Query: 62 TFIRGNNVLYIST 74
FIRGNNVLYIST
Sbjct: 69 CFIRGNNVLYIST 81
>gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus
multilocularis]
Length = 83
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 67/80 (83%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS+K++ F++ I GRPVVVKL SG DYRGVL LDGYMN+ LEQTEEY+ GQLKNKYG
Sbjct: 3 MSQKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVEGQLKNKYG 62
Query: 61 DTFIRGNNVLYISTQKRRGV 80
DTFIRGNNV YISTQKR G+
Sbjct: 63 DTFIRGNNVFYISTQKRGGL 82
>gi|21554327|gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I GRPV+VKL SGVDYRG L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 13 KTPADFLKSIRGRPVIVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 65 RGNNVLYIST 74
RGNNVLYIST
Sbjct: 73 RGNNVLYIST 82
>gi|320167319|gb|EFW44218.1| U6 snRNA-associated Sm-like protein LSm6 [Capsaspora owczarzaki
ATCC 30864]
Length = 83
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 66/75 (88%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K+ S F++ I G+PVVVKL SGV+Y+G+L+CLDGYMNIALEQTEEY+NGQLK+KYGD F
Sbjct: 7 KQGPSAFLRHIIGKPVVVKLNSGVEYKGLLACLDGYMNIALEQTEEYVNGQLKSKYGDAF 66
Query: 64 IRGNNVLYISTQKRR 78
IRGNNVLYIS K+R
Sbjct: 67 IRGNNVLYISASKKR 81
>gi|334331104|ref|XP_001376922.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Monodelphis domestica]
Length = 97
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 66/74 (89%), Gaps = 2/74 (2%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGN--NVLYIST 74
FIRGN NVL+ +T
Sbjct: 64 FIRGNNGNVLFFTT 77
>gi|15224366|ref|NP_181909.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|145331121|ref|NP_001078052.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|2281089|gb|AAB64025.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|30725284|gb|AAP37664.1| At2g43810 [Arabidopsis thaliana]
gi|110735708|dbj|BAE99834.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|222423635|dbj|BAH19786.1| AT2G43810 [Arabidopsis thaliana]
gi|330255235|gb|AEC10329.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|330255236|gb|AEC10330.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 64/72 (88%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKN YGD F+
Sbjct: 13 KTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFV 72
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 73 RGNNVLYISTTK 84
>gi|384247792|gb|EIE21278.1| isoform CRA_b [Coccomyxa subellipsoidea C-169]
Length = 84
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 64/72 (88%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+E TEEY+NGQLKNKYGD FI
Sbjct: 12 KTPADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMESTEEYVNGQLKNKYGDAFI 71
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 72 RGNNVLYISTVK 83
>gi|240977906|ref|XP_002402835.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
gi|215491231|gb|EEC00872.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
Length = 116
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/61 (91%), Positives = 59/61 (96%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
PVVVKL SG+DYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD FIRGNNVLYISTQKR
Sbjct: 55 PVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 114
Query: 78 R 78
R
Sbjct: 115 R 115
>gi|60687576|gb|AAX30121.1| putative U6-snRNA-associated protein [Schistosoma japonicum]
Length = 78
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 65/77 (84%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ K++ F++ I GRPVVVKL SG DYRGVL LDGYMN+ LEQTEEY++GQLKNKYG
Sbjct: 1 MAHKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVDGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
DTFIRGNNV YISTQKR
Sbjct: 61 DTFIRGNNVFYISTQKR 77
>gi|225712226|gb|ACO11959.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
gi|225712252|gb|ACO11972.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
Length = 85
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F++QI GRPV+VKL SG DYRGVLSCLDG+MNIALEQTEEY GQLKNKYGD F+RGNNV
Sbjct: 13 FLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYCEGQLKNKYGDCFLRGNNV 72
Query: 70 LYISTQK 76
LYISTQK
Sbjct: 73 LYISTQK 79
>gi|170577453|ref|XP_001894009.1| U6 snRNA-associated Sm-like protein LSm6 [Brugia malayi]
gi|158599611|gb|EDP37154.1| U6 snRNA-associated Sm-like protein LSm6, putative [Brugia
malayi]
Length = 77
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 67/73 (91%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSR+++ S+F++QI G+PVVVKL SG+DYRG+LSCLDG+MNIALEQTEEY NGQLKNKYG
Sbjct: 1 MSRRQNPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYG 60
Query: 61 DTFIRGNNVLYIS 73
D FIRGNN L+++
Sbjct: 61 DAFIRGNNGLFLN 73
>gi|222424888|dbj|BAH20395.1| AT2G43810 [Arabidopsis thaliana]
Length = 91
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQ EEY+NGQLKN YGD F+
Sbjct: 13 KTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQAEEYVNGQLKNTYGDAFV 72
Query: 65 RGNNVLYISTQK 76
RGNNVLYIST K
Sbjct: 73 RGNNVLYISTTK 84
>gi|303283108|ref|XP_003060845.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457196|gb|EEH54495.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 85
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++ I G+ VVVKL SGVDYRGVL+CLDGYMNIA+E+TEEY+NGQLKNKYGD FIRGN
Sbjct: 15 ADFLKSIKGKQVVVKLNSGVDYRGVLACLDGYMNIAMEETEEYVNGQLKNKYGDAFIRGN 74
Query: 68 NVLYISTQKRR 78
NVLYIST K +
Sbjct: 75 NVLYISTVKDK 85
>gi|312077539|ref|XP_003141348.1| hypothetical protein LOAG_05763 [Loa loa]
Length = 71
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSR+++ S+F++QI G+PVVVKL SGVDYRG+LSCLDG+MNIALEQTEEY NGQLKNKYG
Sbjct: 1 MSRRQNPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYG 60
Query: 61 DTFIRGNNVLY 71
D FIRGNN L+
Sbjct: 61 DAFIRGNNGLF 71
>gi|444729643|gb|ELW70053.1| U6 snRNA-associated Sm-like protein LSm6 [Tupaia chinensis]
Length = 82
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 61/66 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNN 68
FIRGNN
Sbjct: 64 FIRGNN 69
>gi|149058700|gb|EDM09857.1| rCG63582, isoform CRA_a [Rattus norvegicus]
Length = 81
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 62/68 (91%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVL 70
FIRGNN L
Sbjct: 64 FIRGNNGL 71
>gi|281354086|gb|EFB29670.1| hypothetical protein PANDA_004348 [Ailuropoda melanoleuca]
Length = 78
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 61/66 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNN 68
FIRGNN
Sbjct: 64 FIRGNN 69
>gi|432114062|gb|ELK36109.1| U6 snRNA-associated Sm-like protein LSm6 [Myotis davidii]
Length = 84
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 61/66 (92%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNN 68
FIRGNN
Sbjct: 64 FIRGNN 69
>gi|452823027|gb|EME30041.1| U6 snRNA-associated Sm-like protein LSm6 isoform 1 [Galdieria
sulphuraria]
Length = 89
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 66/74 (89%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K S + F++Q+ G+PVVVKL SGV+Y+GVL+CLDGYMNIA+EQTEE++ QLKNKYGDTF
Sbjct: 9 KRSPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNKYGDTF 68
Query: 64 IRGNNVLYISTQKR 77
IRGNNVLYI+ QK+
Sbjct: 69 IRGNNVLYIAAQKK 82
>gi|224000756|ref|XP_002290050.1| hypothetical protein THAPSDRAFT_262381 [Thalassiosira pseudonana
CCMP1335]
gi|220973472|gb|EED91802.1| hypothetical protein THAPSDRAFT_262381, partial [Thalassiosira
pseudonana CCMP1335]
Length = 75
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 66/75 (88%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
+K S S F++ + GRPV V+L +G DYRGVL+CLDGYMNIA+EQTEEY++GQLK+KYGD
Sbjct: 1 QKRSPSDFLKAVLGRPVNVRLNTGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDC 60
Query: 63 FIRGNNVLYISTQKR 77
FIRGNNV+YIS+QKR
Sbjct: 61 FIRGNNVMYISSQKR 75
>gi|159475096|ref|XP_001695659.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
gi|158275670|gb|EDP01446.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
Length = 89
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 63/70 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ ++F++ I G+ V+VKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 14 KTPAEFLKAIKGKAVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 73
Query: 65 RGNNVLYIST 74
RGNNVLYIS
Sbjct: 74 RGNNVLYISA 83
>gi|424513391|emb|CCO66013.1| U6 snRNA-associated Sm-like protein LSm6 [Bathycoccus prasinos]
Length = 82
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 63/75 (84%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S ++ + F++ I G+ VVVKL SGVDYRG+L+CLDGYMNIA+E TEEY+NGQLKNKYGD
Sbjct: 8 SASKTPADFLKSIRGKRVVVKLNSGVDYRGILACLDGYMNIAMEHTEEYVNGQLKNKYGD 67
Query: 62 TFIRGNNVLYISTQK 76
FIRGNNVLYIS K
Sbjct: 68 AFIRGNNVLYISLAK 82
>gi|413918137|gb|AFW58069.1| hypothetical protein ZEAMMB73_640240 [Zea mays]
Length = 177
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 58/64 (90%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ S F++ I GRPVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 17 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 76
Query: 65 RGNN 68
RGNN
Sbjct: 77 RGNN 80
>gi|302836979|ref|XP_002950049.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
gi|300264522|gb|EFJ48717.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
Length = 73
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 62/70 (88%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ ++F++ I G+PV+VKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FI
Sbjct: 1 QTPAEFLKAIKGKPVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 60
Query: 65 RGNNVLYIST 74
RGNN I+T
Sbjct: 61 RGNNGTPITT 70
>gi|440802693|gb|ELR23622.1| Smlike protein LSm6, putative [Acanthamoeba castellanii str.
Neff]
Length = 84
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K+S S F++ + GRPV+VKL SGV Y+G+L LDGYMNIA+EQTEEY++GQLK KYGD F
Sbjct: 7 KKSPSDFLKLVLGRPVIVKLNSGVTYQGILVALDGYMNIAMEQTEEYVHGQLKGKYGDAF 66
Query: 64 IRGNNVLYISTQ 75
IRGNNVLYIS+Q
Sbjct: 67 IRGNNVLYISSQ 78
>gi|393219154|gb|EJD04642.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 97
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L SGVDYRG+LSCLDGYMNIALEQTEEY+NG++ NKYGD F+R
Sbjct: 25 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEYVNGRVTNKYGDAFVR 84
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 85 GNNVLYISADE 95
>gi|328766806|gb|EGF76858.1| hypothetical protein BATDEDRAFT_92275 [Batrachochytrium
dendrobatidis JAM81]
Length = 78
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S +F+Q + G+PVVVKL SGVDYRG+L+CLDGYMNIALE+T+EY++G K+ YGD FIR
Sbjct: 4 SPQEFLQHVIGQPVVVKLNSGVDYRGILACLDGYMNIALEETKEYVDGVEKHDYGDCFIR 63
Query: 66 GNNVLYISTQKR 77
GNNVLYI+ QK+
Sbjct: 64 GNNVLYIAAQKQ 75
>gi|348677781|gb|EGZ17598.1| hypothetical protein PHYSODRAFT_499052 [Phytophthora sojae]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 63/75 (84%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S K++ S F++ + GRPV VKL +GV+Y+GVL+CLDG+MNIA+EQT+EY NGQLK +YGD
Sbjct: 10 STKKTPSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYSNGQLKAQYGD 69
Query: 62 TFIRGNNVLYISTQK 76
FIRGNNVLYIS K
Sbjct: 70 CFIRGNNVLYISASK 84
>gi|336368839|gb|EGN97181.1| hypothetical protein SERLA73DRAFT_92211 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381639|gb|EGO22790.1| hypothetical protein SERLADRAFT_471211 [Serpula lacrymans var.
lacrymans S7.9]
Length = 98
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L SGVDYRGVLSCLDGYMNIALEQTEE++NG L N+YGD F+R
Sbjct: 26 SPTDFLKGVVGKRVIVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGTLTNRYGDAFVR 85
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 86 GNNVLYISAAE 96
>gi|409077094|gb|EKM77461.1| hypothetical protein AGABI1DRAFT_61513 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426191830|gb|EKV41769.1| hypothetical protein AGABI2DRAFT_212748 [Agaricus bisporus var.
bisporus H97]
Length = 95
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L+SGVDYRG+LSCLDGYMNIALEQTEE++NG + NKYGD FIR
Sbjct: 23 SPTDFLKNVVGKKVIVRLLSGVDYRGILSCLDGYMNIALEQTEEHVNGVVTNKYGDAFIR 82
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 83 GNNVLYISAAE 93
>gi|301101082|ref|XP_002899630.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
gi|262103938|gb|EEY61990.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
Length = 83
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 63/75 (84%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S K++ S F++ + GRPV VKL +GV+Y+GVL+CLDG+MNIA+EQT+EY NGQLK +YGD
Sbjct: 9 STKKTPSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYQNGQLKAQYGD 68
Query: 62 TFIRGNNVLYISTQK 76
FIRGNNVLYIS K
Sbjct: 69 CFIRGNNVLYISASK 83
>gi|345567352|gb|EGX50284.1| hypothetical protein AOL_s00076g48 [Arthrobotrys oligospora ATCC
24927]
Length = 86
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +IHG P+ VKL SGV+Y+G L +DGYMNIALE TEEY+NG+ KN+YGD
Sbjct: 12 SSSKDPSSFLSEIHGAPITVKLNSGVEYKGELQSVDGYMNIALENTEEYVNGERKNRYGD 71
Query: 62 TFIRGNNVLYISTQK 76
FIRGNNVLYIS K
Sbjct: 72 VFIRGNNVLYISADK 86
>gi|384492879|gb|EIE83370.1| U6 snRNA-associated Sm-like protein LSm6 [Rhizopus delemar RA
99-880]
Length = 79
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 61/75 (81%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
++ + + F+ + G+ V VKL SG+DY+G L+CLDGYMNIALE TEEY++G+LKNKYGD
Sbjct: 5 TKSRTPTDFLGTVLGQTVKVKLNSGIDYKGTLACLDGYMNIALENTEEYVDGRLKNKYGD 64
Query: 62 TFIRGNNVLYISTQK 76
TFIRGNNVLYIS K
Sbjct: 65 TFIRGNNVLYISADK 79
>gi|392586650|gb|EIW75986.1| LSM-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 98
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L SGVDYRG+LSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 26 SPTDFLKGVVGKRVIVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGSVTNRYGDAFIR 85
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 86 GNNVLYISAAE 96
>gi|353243979|emb|CCA75450.1| probable U6 snRNA-associated Sm-like protein LSm6 [Piriformospora
indica DSM 11827]
Length = 95
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 60/71 (84%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K S + F++ + G+ VVV+LVSGVDY+GVL CLDGYMNIA+EQTEE++NG + N+YGD F
Sbjct: 21 KGSPNDFLKAVVGKRVVVRLVSGVDYKGVLQCLDGYMNIAMEQTEEHVNGVITNRYGDAF 80
Query: 64 IRGNNVLYIST 74
IRGNNVLYIS
Sbjct: 81 IRGNNVLYISA 91
>gi|213408613|ref|XP_002175077.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
gi|212003124|gb|EEB08784.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
Length = 75
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 59/69 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S+F+ ++ G+PV ++L SGVDY+G+LSCLDGYMN+ALE TEEY+NG+ N+YGD FIR
Sbjct: 4 SPSEFLNKVIGKPVFIRLNSGVDYKGILSCLDGYMNLALENTEEYVNGKKTNEYGDAFIR 63
Query: 66 GNNVLYIST 74
GNNVLY+S
Sbjct: 64 GNNVLYVSA 72
>gi|302683352|ref|XP_003031357.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
gi|300105049|gb|EFI96454.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
Length = 97
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L+SGVDYRGVLSCLDGYMNIALEQTEE++ G++ N+YGD FIR
Sbjct: 25 SPTDFLKGVVGKRVIVRLISGVDYRGVLSCLDGYMNIALEQTEEHVGGRVVNRYGDAFIR 84
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 85 GNNVLYISAAE 95
>gi|256053086|ref|XP_002570039.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|256062525|ref|XP_002570343.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|350644790|emb|CCD60497.1| small nuclear ribonucleoprotein f (snrnp-f),putative [Schistosoma
mansoni]
Length = 122
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 57/69 (82%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ K++ F++ I GRPVVVKL SG DYRGVL LDGYMN+ LEQTEEYI+GQLKNKYG
Sbjct: 1 MAHKQTPRDFLKLIVGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYIDGQLKNKYG 60
Query: 61 DTFIRGNNV 69
DTFIRGNN
Sbjct: 61 DTFIRGNNA 69
>gi|170114328|ref|XP_001888361.1| predicted protein [Laccaria bicolor S238N-H82]
gi|189028838|sp|B0DWN3.1|LSM6_LACBS RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|164636673|gb|EDR00966.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 99
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L SGVDYRG+LSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 27 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 86
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 87 GNNVLYISAAE 97
>gi|452823026|gb|EME30040.1| U6 snRNA-associated Sm-like protein LSm6 isoform 2 [Galdieria
sulphuraria]
Length = 75
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 58/66 (87%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
K S + F++Q+ G+PVVVKL SGV+Y+GVL+CLDGYMNIA+EQTEE++ QLKNKYGDT
Sbjct: 8 EKRSPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNKYGDT 67
Query: 63 FIRGNN 68
FIRGNN
Sbjct: 68 FIRGNN 73
>gi|328854944|gb|EGG04073.1| hypothetical protein MELLADRAFT_72433 [Melampsora larici-populina
98AG31]
Length = 93
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++Q+ G VVV+L SGVDYRG+LSCLDGYMNIALE TEEY+NG +N YGD F+RGN
Sbjct: 25 ADFLKQVVGHEVVVRLNSGVDYRGILSCLDGYMNIALENTEEYVNGIKRNSYGDAFVRGN 84
Query: 68 NVLYIS 73
NVLYIS
Sbjct: 85 NVLYIS 90
>gi|402219102|gb|EJT99176.1| U6 snRNA-associated Sm-like protein LSm6 [Dacryopinax sp. DJM-731
SS1]
Length = 88
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 60/69 (86%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++ + G+ VVV+L+SGVDY+G+LSCLDGYMNIALEQTEEY++G + N+YGD FIRGN
Sbjct: 18 ADFLKGVIGKRVVVRLISGVDYQGLLSCLDGYMNIALEQTEEYVDGAVVNRYGDAFIRGN 77
Query: 68 NVLYISTQK 76
NVLYIS +
Sbjct: 78 NVLYISAME 86
>gi|403157835|ref|XP_003307220.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163571|gb|EFP74214.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 96
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F++Q+ G V V+L SGVDYRG+LSCLDGYMNIALE TEEY+NG +N YGD F+RGN
Sbjct: 28 SDFLKQVVGHQVTVRLNSGVDYRGILSCLDGYMNIALENTEEYVNGIKRNSYGDAFLRGN 87
Query: 68 NVLYIS 73
NVLYIS
Sbjct: 88 NVLYIS 93
>gi|354459633|pdb|3SWN|B Chain B, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459636|pdb|3SWN|E Chain E, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459639|pdb|3SWN|Q Chain Q, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459642|pdb|3SWN|T Chain T, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 77
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M S ++F+ ++ G+ V+++L SGVDY+G+LSCLDGYMN+ALE+TEEY+NG+ N YG
Sbjct: 1 MGMDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYG 60
Query: 61 DTFIRGNNVLYIST 74
D FIRGNNVLY+S
Sbjct: 61 DAFIRGNNVLYVSA 74
>gi|323455823|gb|EGB11691.1| hypothetical protein AURANDRAFT_21376 [Aureococcus anophagefferens]
Length = 104
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 61/86 (70%), Gaps = 16/86 (18%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY----------------I 51
S F++ + GRPV+VKL SGV YRG+L+CLDGYMNIA+EQTEEY +
Sbjct: 16 SDFLKAVLGRPVIVKLNSGVSYRGILACLDGYMNIAMEQTEEYARRGARETARARAARRV 75
Query: 52 NGQLKNKYGDTFIRGNNVLYISTQKR 77
+GQLK KYGD FIRGNNV YIST +R
Sbjct: 76 DGQLKAKYGDCFIRGNNVHYISTIRR 101
>gi|66819863|ref|XP_643590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74857296|sp|Q552U1.1|LSM6_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm6
gi|60471654|gb|EAL69610.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 88
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F + GRPVVVKL +GV+YRG+L +DG MNI +EQTEEY+NGQLK KYGD F+RGNNV
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 70 LYISTQKRR 78
LYIS Q R+
Sbjct: 80 LYISAQPRK 88
>gi|219111981|ref|XP_002177742.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410627|gb|EEC50556.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 66
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 57/66 (86%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
+K S S F++ + GRPV VKL SG++YRG+L+CLDGY+NIA+EQTEEY++GQL+ KYGD
Sbjct: 1 KKRSPSDFLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQTEEYVDGQLQAKYGDC 60
Query: 63 FIRGNN 68
FIRGNN
Sbjct: 61 FIRGNN 66
>gi|358056533|dbj|GAA97502.1| hypothetical protein E5Q_04180 [Mixia osmundae IAM 14324]
Length = 86
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 58/68 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S F++ G+ V V+L SGVDYRG+LSCLD Y+NIA+EQTEE +NGQ++N+YGD+FIR
Sbjct: 14 SPSDFLKNTVGQLVSVRLNSGVDYRGILSCLDAYLNIAMEQTEEVVNGQVRNRYGDSFIR 73
Query: 66 GNNVLYIS 73
GNNVLYIS
Sbjct: 74 GNNVLYIS 81
>gi|19115292|ref|NP_594380.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720076|sp|Q9UUI1.1|LSM6_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5832405|emb|CAB54975.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe]
Length = 75
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 59/69 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S ++F+ ++ G+ V+++L SGVDY+G+LSCLDGYMN+ALE+TEEY+NG+ N YGD FIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 66 GNNVLYIST 74
GNNVLY+S
Sbjct: 64 GNNVLYVSA 72
>gi|328868532|gb|EGG16910.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 95
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 54/63 (85%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
GRPVVVKL +GV+YRG+L +DG MNI +EQTEEY+NGQLK KYGD F+RGNNVLYIS Q
Sbjct: 33 GRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQ 92
Query: 76 KRR 78
++
Sbjct: 93 SKK 95
>gi|325185112|emb|CCA19604.1| U6 snRNAassociated Smlike protein LSm6 putative [Albugo laibachii
Nc14]
Length = 81
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S+K++ S F++ + GRPV VKL +G +YRGVL+CLDG+MNIA+EQT+EYINGQLK +YGD
Sbjct: 8 SQKKTPSDFLKNVLGRPVDVKLNNGSEYRGVLACLDGFMNIAMEQTQEYINGQLKAQYGD 67
Query: 62 TFIRGNN 68
FIRGNN
Sbjct: 68 CFIRGNN 74
>gi|294884790|gb|ADF47410.1| Sm-like-6 protein [Dugesia japonica]
Length = 76
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY 59
MS+K++ S F++ I +PV+VKL G DYRGVL LDGYMN+ LEQTEEY+NGQLKNKY
Sbjct: 1 MSKKQNPSDFLKAISDKPVLVKLNRPGADYRGVLVSLDGYMNLMLEQTEEYVNGQLKNKY 60
Query: 60 GDTFIRGNN 68
DTFIRGNN
Sbjct: 61 NDTFIRGNN 69
>gi|345326618|ref|XP_003431064.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
Length = 54
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 47/48 (97%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRR 78
GVL+CLDGYMNIALEQTEEY+NGQLKNKYGD FIRGNNVLYISTQKRR
Sbjct: 6 GVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 53
>gi|443926573|gb|ELU45190.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 143
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDY+GVLSCLDGYMNIA+EQTEE++NG++ N+YGDTFIR
Sbjct: 55 SPTDFLKNVVGKRVVVRLTSGVDYQGVLSCLDGYMNIAMEQTEEHVNGRVTNRYGDTFIR 114
Query: 66 GNN 68
GNN
Sbjct: 115 GNN 117
>gi|343426809|emb|CBQ70337.1| probable U6 snRNA-associated Sm-like protein LSm6 [Sporisorium
reilianum SRZ2]
Length = 80
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
+ S + F++ + G+ V V+L SG+DYRGVLSCLDGYMNIALEQT EY++G KN YGD
Sbjct: 6 KAGSPNDFLKGVIGKSVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGVQKNSYGDA 65
Query: 63 FIRGNNVLYISTQKR 77
FIRGNNV+YI+ ++
Sbjct: 66 FIRGNNVMYITALEK 80
>gi|189028854|sp|Q4PG71.2|LSM6_USTMA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
++ S + F++ + G+ V V+L SG+DYRGVLSCLDGYMNIALEQT EY++G KN YGD
Sbjct: 10 AKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGD 69
Query: 62 TFIRGNNVLYISTQKR 77
FIRGNNV+YI+ ++
Sbjct: 70 AFIRGNNVMYITALEK 85
>gi|392572202|gb|EIW65374.1| LSM-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 98
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRG+LSCLDGYMNIALEQTEE++NG++ NKYGD FIR
Sbjct: 26 SPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNKYGDAFIR 85
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 86 GNNVLYISAAE 96
>gi|390981168|pdb|4EMK|B Chain B, Crystal Structure Of Splsm567
Length = 75
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 58/69 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S ++F+ ++ G+ V+++L SGVDY+G+LSCLDGY N+ALE+TEEY+NG+ N YGD FIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYXNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 66 GNNVLYIST 74
GNNVLY+S
Sbjct: 64 GNNVLYVSA 72
>gi|209879862|ref|XP_002141371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556977|gb|EEA07022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 85
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 61/71 (85%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
+++ S F++Q+ G+PV+V+L SG+DY+G+L+CLD MNIA+E T+E++NG L ++GDTF
Sbjct: 9 RQNPSDFLRQVIGKPVIVRLNSGIDYKGILACLDDRMNIAMEDTKEFVNGSLVEQHGDTF 68
Query: 64 IRGNNVLYIST 74
IRGNNVLYI++
Sbjct: 69 IRGNNVLYIAS 79
>gi|389750730|gb|EIM91803.1| LSM-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 102
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRGVLSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 30 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNRYGDAFIR 89
Query: 66 GNNVLYISTQKR 77
GNNVLYIS +
Sbjct: 90 GNNVLYISADEE 101
>gi|67624411|ref|XP_668488.1| Sm protein F [Cryptosporidium hominis TU502]
gi|54659686|gb|EAL38252.1| Sm protein F [Cryptosporidium hominis]
Length = 84
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 58/73 (79%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+S S F++Q+ G PV+V+L SGVDY+G+L+CLD MNIA+E TEEY++G +GDTFI
Sbjct: 12 KSPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFI 71
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIS+ +
Sbjct: 72 RGNNVLYISSPPK 84
>gi|66362830|ref|XP_628381.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
gi|46229796|gb|EAK90614.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
Length = 93
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 58/73 (79%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+S S F++Q+ G PV+V+L SGVDY+G+L+CLD MNIA+E TEEY++G +GDTFI
Sbjct: 21 KSPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFI 80
Query: 65 RGNNVLYISTQKR 77
RGNNVLYIS+ +
Sbjct: 81 RGNNVLYISSPPK 93
>gi|212543325|ref|XP_002151817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
gi|210066724|gb|EEA20817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
Length = 80
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NGQL+ YGD
Sbjct: 7 SEGKDPSTFLSEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS +
Sbjct: 67 AFVRGNNVLYISAR 80
>gi|242786335|ref|XP_002480785.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720932|gb|EED20351.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 57/74 (77%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NGQL+ YGD
Sbjct: 7 SEGKDPSTFLGEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
TF+RGNNVLYI+ +
Sbjct: 67 TFVRGNNVLYIAAR 80
>gi|393242672|gb|EJD50189.1| like-Sm ribonucleo protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 63
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+LVSGVDY+GVLSCLDGYMNIALEQT E++NG + NKYGD FIR
Sbjct: 1 SPTDFLKAVVGKRVVVRLVSGVDYKGVLSCLDGYMNIALEQTVEHVNGNVTNKYGDAFIR 60
Query: 66 GNN 68
GNN
Sbjct: 61 GNN 63
>gi|388851483|emb|CCF54885.1| probable U6 snRNA-associated Sm-like protein LSm6 [Ustilago
hordei]
Length = 85
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V V+L SG+DYRGVLSCLDGYMNIALEQT EY++G KN YGD FIR
Sbjct: 14 SPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGVQKNSYGDAFIR 73
Query: 66 GNNVLYISTQKR 77
GNNV+YI+ ++
Sbjct: 74 GNNVMYITALEK 85
>gi|425770038|gb|EKV08513.1| hypothetical protein PDIP_68050 [Penicillium digitatum Pd1]
gi|425771729|gb|EKV10166.1| hypothetical protein PDIG_58570 [Penicillium digitatum PHI26]
Length = 80
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV+VKL SGV Y+G L +DGYMNIALE+TEEY+NG+L+ YGD
Sbjct: 7 SEGKDPSVFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS+
Sbjct: 67 AFVRGNNVLYISSS 80
>gi|296425521|ref|XP_002842289.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638552|emb|CAZ86480.1| unnamed protein product [Tuber melanosporum]
Length = 80
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G P+ VKL SGV+Y+G LS +DGYMNIALE+T EY+ GQ++N+YGD FIRGN
Sbjct: 11 STFLSEIIGAPITVKLNSGVEYKGELSSVDGYMNIALEKTVEYVGGQVRNRYGDVFIRGN 70
Query: 68 NVLYIS 73
NVLYIS
Sbjct: 71 NVLYIS 76
>gi|401884862|gb|EJT49000.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 2479]
gi|406694421|gb|EKC97748.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 8904]
Length = 91
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S F++ I G+ V V++ SG+DY G+L+CLDGYMN+ALE+TEE+ G+L KYGDTF+R
Sbjct: 19 SPSDFLKNIVGKKVKVRIGSGIDYHGLLTCLDGYMNVALEETEEWAQGRLIAKYGDTFLR 78
Query: 66 GNNVLYIST 74
GNNVLYIS
Sbjct: 79 GNNVLYISA 87
>gi|395326114|gb|EJF58527.1| like-Sm ribonucleo protein, partial [Dichomitus squalens LYAD-421
SS1]
Length = 75
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRG+LSCLDGYMNIALEQTEE++NG++ N+YGD FIR
Sbjct: 3 SPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNRYGDAFIR 62
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 63 GNNVLYISAAE 73
>gi|315045632|ref|XP_003172191.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|327304531|ref|XP_003236957.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|311342577|gb|EFR01780.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|326459955|gb|EGD85408.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|326472909|gb|EGD96918.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton tonsurans
CBS 112818]
Length = 80
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG+++ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAD 80
>gi|326477395|gb|EGE01405.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton equinum
CBS 127.97]
Length = 80
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG+++ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAD 80
>gi|296805353|ref|XP_002843501.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238844803|gb|EEQ34465.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 80
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG+++ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAD 80
>gi|154278836|ref|XP_001540231.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|189028837|sp|A6R363.1|LSM6_AJECN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|150412174|gb|EDN07561.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|225554344|gb|EEH02643.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 80
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 7 SEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAD 80
>gi|409050774|gb|EKM60250.1| hypothetical protein PHACADRAFT_75901, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 71
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRGVLSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 60
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 61 GNNVLYISAAE 71
>gi|449550266|gb|EMD41230.1| hypothetical protein CERSUDRAFT_109849 [Ceriporiopsis
subvermispora B]
Length = 100
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRG+LSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 28 SPTDFLKGVVGKRVVVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGLVTNRYGDAFIR 87
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 88 GNNVLYISAAE 98
>gi|189028850|sp|A1DM27.2|LSM6_NEOFI RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV YRG L +DGYMNIALE++EE+++G+L+ YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGN 72
Query: 68 NVLYISTQ 75
NVLYIS Q
Sbjct: 73 NVLYISAQ 80
>gi|189028860|sp|Q4WNI0.2|LSM6_ASPFU RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE++EE+++G+LK YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGN 72
Query: 68 NVLYISTQ 75
NVLYIS Q
Sbjct: 73 NVLYISAQ 80
>gi|449018375|dbj|BAM81777.1| U6 snRNA-associated Sm-like protein LSm6 [Cyanidioschyzon merolae
strain 10D]
Length = 99
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 55/67 (82%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++++ GRPVVVKL +G +YRG L CLDGY+NI LE + E++NG+LK +YGDT +RG+
Sbjct: 30 THFLRKVLGRPVVVKLNNGTEYRGTLVCLDGYLNIVLENSAEFLNGELKRRYGDTLLRGS 89
Query: 68 NVLYIST 74
NVLY+ T
Sbjct: 90 NVLYVGT 96
>gi|299740542|ref|XP_001833825.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
gi|189028857|sp|A8NHT8.2|LSM6_COPC7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|298404296|gb|EAU87855.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L+SGVDYRG+LSCLDGYMNIA+EQTEE +NG++ N+YGD FIR
Sbjct: 23 SPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIR 82
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 83 GNNVLYISADE 93
>gi|317145212|ref|XP_003189687.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus oryzae
RIB40]
Length = 80
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE++EEY+NG+L+ YGD
Sbjct: 7 SEGKDPSVFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEYVNGKLRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAN 80
>gi|367020370|ref|XP_003659470.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
gi|347006737|gb|AEO54225.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
Length = 83
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGDTF+RGN
Sbjct: 16 SSFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTKRRTYGDTFVRGN 75
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 76 NVMYISAD 83
>gi|322698480|gb|EFY90250.1| U6 snRNA-associated protein LSm6 [Metarhizium acridum CQMa 102]
Length = 86
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV+VKL SGV Y+G L +DGYMNIALE+TEE+ING+ + YGD F+RGN
Sbjct: 18 SSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGKKRRDYGDAFVRGN 77
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 78 NVMYISAD 85
>gi|124513268|ref|XP_001349990.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
gi|23615407|emb|CAD52398.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
Length = 77
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F++ + GR V+V+L +G DY+G+L+CLD MN+ALEQTEEY +G+L +KY D FIR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>gi|407921547|gb|EKG14689.1| hypothetical protein MPH_08162 [Macrophomina phaseolina MS6]
Length = 80
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALEQT+EY+ G+L+ YGD
Sbjct: 6 SDAKDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQTKEYVEGKLRRNYGD 65
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNV+YIS
Sbjct: 66 AFVRGNNVMYISAD 79
>gi|189028863|sp|Q2HAN0.2|LSM6_CHAGB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 82
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|310793377|gb|EFQ28838.1| LSM domain-containing protein [Glomerella graminicola M1.001]
gi|380486548|emb|CCF38632.1| U6 snRNA-associated Sm-like protein LSm6 [Colletotrichum
higginsianum]
Length = 83
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|392574530|gb|EIW67666.1| hypothetical protein TREMEDRAFT_20231, partial [Tremella
mesenterica DSM 1558]
Length = 77
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S F++ I G+ V V++ G+DY G+L+CLDGYMN+ALE+TEE++NG YGD F+R
Sbjct: 5 SPSDFLKNIVGKRVKVRVGKGIDYHGLLTCLDGYMNVALEETEEWVNGHRVTTYGDCFLR 64
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 65 GNNVLYISAME 75
>gi|326427782|gb|EGD73352.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 77
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+++IH + VVVKL SG+ + G L+ LD +MN+ALE TEEY+NG+ KYGD F+RGN
Sbjct: 6 SDFLKKIHRQKVVVKLNSGITFTGRLAALDAFMNVALEDTEEYVNGKQTAKYGDAFVRGN 65
Query: 68 NVLYISTQKRR 78
NVLYIS +
Sbjct: 66 NVLYISPAEEE 76
>gi|320585945|gb|EFW98624.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 84
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PVVVKL SGV Y+G L +DGYMNIALE+T EY+NG + YGD F+RGN
Sbjct: 16 SAFLSEIIGSPVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRRTYGDAFVRGN 75
Query: 68 NVLYISTQK 76
NV+YIS +
Sbjct: 76 NVMYISADE 84
>gi|380090691|emb|CCC04861.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 82
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEYING + YGD F+RGN
Sbjct: 15 SGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYINGVKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|189028859|sp|A1CE19.2|LSM6_ASPCL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 78
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALEQ++E+++G+L+ YGD FIRGN
Sbjct: 12 SAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGN 71
Query: 68 NVLYIST 74
NVLYI+
Sbjct: 72 NVLYIAA 78
>gi|408398664|gb|EKJ77793.1| hypothetical protein FPSE_02027 [Fusarium pseudograminearum
CS3096]
Length = 82
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV VKL SGV Y+G L +DGYMNIALE+T EY+NGQ + +YGD F+RGN
Sbjct: 15 SSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTSEYVNGQKRREYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|397639780|gb|EJK73758.1| hypothetical protein THAOC_04600 [Thalassiosira oceanica]
Length = 104
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 23/88 (26%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRG-----------------------VLSCLDGYM 40
K S S F++ + GR VVV+L SG DY+G VL+CLDGYM
Sbjct: 10 KRSPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYM 69
Query: 41 NIALEQTEEYINGQLKNKYGDTFIRGNN 68
NIA+EQTEEY++GQLK+KYGD FIRGNN
Sbjct: 70 NIAMEQTEEYVDGQLKSKYGDCFIRGNN 97
>gi|452837704|gb|EME39646.1| hypothetical protein DOTSEDRAFT_66594 [Dothistroma septosporum
NZE10]
Length = 91
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE T+EY+ G+L+ YGD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEYVEGKLRRNYGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 80 NVMYISAD 87
>gi|189028851|sp|A7UXE4.2|LSM6_NEUCR RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|350296721|gb|EGZ77698.1| U6 snRNA-associated Sm-like protein LSm6 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEE+ING + YGD
Sbjct: 9 SEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGD 68
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYISAD 82
>gi|378725534|gb|EHY51993.1| U6 snRNA-associated Sm-like protein LSm6 [Exophiala dermatitidis
NIH/UT8656]
Length = 80
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ I G PV VKL SGV Y+G L +DGYMNIALE+ EY+NGQL+ YGD F+RGN
Sbjct: 13 ASFLSSIIGVPVTVKLNSGVVYKGELQSVDGYMNIALEKCAEYVNGQLRRNYGDAFVRGN 72
Query: 68 NVLYISTQ 75
NVLYI+++
Sbjct: 73 NVLYIASE 80
>gi|429859545|gb|ELA34324.1| u6 snrna-associated sm-like protein lsm6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 83
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGVKRRAYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|259484712|tpe|CBF81168.1| TPA: U6 snRNA-associated Sm-like protein LSm6, putative
(AFU_orthologue; AFUA_6G06325) [Aspergillus nidulans
FGSC A4]
Length = 80
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+++E+++GQL YGD
Sbjct: 7 SEGKDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGD 66
Query: 62 TFIRGNNVLYIST 74
FIRGNNVLYI+
Sbjct: 67 AFIRGNNVLYIAA 79
>gi|336464624|gb|EGO52864.1| hypothetical protein NEUTE1DRAFT_96889 [Neurospora tetrasperma
FGSC 2508]
Length = 82
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEE+ING + YGD
Sbjct: 9 SEGKDPSGFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGD 68
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYISAD 82
>gi|453082226|gb|EMF10274.1| LSM domain-containing protein [Mycosphaerella populorum SO2202]
Length = 93
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE T+E++ G+++ YGD F+RGN
Sbjct: 23 SGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEFVEGKMRRNYGDAFVRGN 82
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 83 NVMYISAD 90
>gi|119184466|ref|XP_001243137.1| hypothetical protein CIMG_07033 [Coccidioides immitis RS]
gi|303320391|ref|XP_003070195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|121931667|sp|Q1DRN0.1|LSM6_COCIM RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|240109881|gb|EER28050.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320041261|gb|EFW23194.1| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides posadasii
str. Silveira]
gi|392866021|gb|EAS31886.2| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides immitis
RS]
Length = 80
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V VKL SGV Y+G L +DGYMNIALE+T+E++NG+L+ YGD F+RGN
Sbjct: 13 SAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGN 72
Query: 68 NVLYISTQ 75
NVLYIS
Sbjct: 73 NVLYISAD 80
>gi|452980522|gb|EME80283.1| hypothetical protein MYCFIDRAFT_189882 [Pseudocercospora
fijiensis CIRAD86]
Length = 90
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE ++E+++G+L+ YGD FIRGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDSKEFVDGKLRRNYGDAFIRGN 79
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 80 NVMYISAD 87
>gi|443895494|dbj|GAC72840.1| small nuclear ribonucleoprotein F [Pseudozyma antarctica T-34]
Length = 90
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S+ S + F++ + G+ V V+L SG+DY+GVLSCLDGYMNIALE T EY++G KN YGD
Sbjct: 7 SKAGSPNDFLKGVIGKSVNVRLNSGIDYQGVLSCLDGYMNIALENTTEYVDGVKKNNYGD 66
Query: 62 TFIRGNNVLY 71
FIRGNN +
Sbjct: 67 AFIRGNNGTF 76
>gi|68074967|ref|XP_679400.1| u6 snRNA-associated sm-like protein [Plasmodium berghei strain
ANKA]
gi|56500140|emb|CAH93764.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
berghei]
Length = 77
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + GR V+V+L +G DY+G+L+CLD MN+ LEQTEEY +G+L KY D FIRGNNV
Sbjct: 9 FVQSLKGRTVIVRLNNGADYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRGNNV 68
Query: 70 LYI 72
YI
Sbjct: 69 FYI 71
>gi|171680313|ref|XP_001905102.1| hypothetical protein [Podospora anserina S mat+]
gi|170939783|emb|CAP65009.1| unnamed protein product [Podospora anserina S mat+]
Length = 82
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S ++ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SGWLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YI+
Sbjct: 75 NVMYIAAD 82
>gi|346322201|gb|EGX91800.1| U6 snRNA-associated Sm-like protein LSm6, putative [Cordyceps
militaris CM01]
Length = 81
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV+VKL SGV Y+G L +DGYMNIALE+T+E++NG + +YGD F+RGN
Sbjct: 13 SSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRKEYGDAFVRGN 72
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 73 NVMYISAD 80
>gi|367043476|ref|XP_003652118.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
gi|346999380|gb|AEO65782.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
Length = 82
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G + YGD F+RGN
Sbjct: 15 SGFLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGVKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|82753616|ref|XP_727750.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii 17XNL]
gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii]
Length = 77
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + GR V+V+L +G DY+G+L+CLD MN+ LEQTEEY +G+L KY D FIRGNNV
Sbjct: 9 FVQSLKGRTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRGNNV 68
Query: 70 LYI 72
YI
Sbjct: 69 FYI 71
>gi|401406794|ref|XP_003882846.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
gi|325117262|emb|CBZ52814.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
Length = 82
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K+S S F+Q++ G+ VVV+L +G DYRGVL+CLD MNIA+++TEE+++G YG +
Sbjct: 6 KKSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKTEEFVDGNFVAAYGLSL 65
Query: 64 IRGNNVLYIST 74
IRGNNVLYIS
Sbjct: 66 IRGNNVLYISA 76
>gi|255938622|ref|XP_002560081.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584702|emb|CAP74228.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 134
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV+VKL SGV Y+G L +DGYMNIALE+TEEY+NG+L+ YGD
Sbjct: 7 SEGKDPSLFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGD 66
Query: 62 TFIRGNNV 69
F+RGNNV
Sbjct: 67 AFVRGNNV 74
>gi|325089253|gb|EGC42563.1| LSM domain-containing protein [Ajellomyces capsulatus H88]
Length = 95
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 7 SEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 66
Query: 62 TFIRGNNVL 70
F+RGNNV+
Sbjct: 67 AFVRGNNVV 75
>gi|240273226|gb|EER36748.1| LSM domain-containing protein [Ajellomyces capsulatus H143]
Length = 95
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 7 SEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 66
Query: 62 TFIRGNNVL 70
F+RGNNV+
Sbjct: 67 AFVRGNNVV 75
>gi|308812352|ref|XP_003083483.1| putative Sm protein F (ISS) [Ostreococcus tauri]
gi|116055364|emb|CAL58032.1| putative Sm protein F (ISS) [Ostreococcus tauri]
Length = 173
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 60/117 (51%), Gaps = 48/117 (41%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRG--------VLSCLDGYMNIALEQTE--------- 48
S S F++ I G+ V+V+L SG DYRG VL+CLDGYMNIA+EQTE
Sbjct: 54 SPSDFLRAIEGKTVLVRLNSGADYRGARSRRSIGVLACLDGYMNIAMEQTEDSTTRARRV 113
Query: 49 ------------------EYINGQLKNKYGDTFIRGNN-------------VLYIST 74
EY+NGQLKNKYGD FIRGNN VLYIS
Sbjct: 114 GRARDATRLTMACTLDAQEYVNGQLKNKYGDAFIRGNNDRRLTRERLSIDAVLYISA 170
>gi|358391711|gb|EHK41115.1| hypothetical protein TRIATDRAFT_206714 [Trichoderma atroviride
IMI 206040]
Length = 83
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G VVVKL SGV Y+G L +DGYMNIALE+T EY+NG + +YGDTF+RGN
Sbjct: 15 SSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTVEYVNGAKRREYGDTFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|358379099|gb|EHK16780.1| hypothetical protein TRIVIDRAFT_184162 [Trichoderma virens
Gv29-8]
Length = 83
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G VVVKL SGV Y+G L +DGYMNIALE+T EY+NG + +YGDTF+RGN
Sbjct: 15 SSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRREYGDTFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|400603112|gb|EJP70710.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 81
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV+VKL SGV Y+G L +DGYMNIALE+T+E++NG + +YGD F+RGN
Sbjct: 13 SSFLGDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRREYGDAFVRGN 72
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 73 NVMYISAD 80
>gi|71004746|ref|XP_757039.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
gi|46096843|gb|EAK82076.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
Length = 82
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 53/69 (76%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
++ S + F++ + G+ V V+L SG+DYRGVLSCLDGYMNIALEQT EY++G KN YGD
Sbjct: 10 AKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGD 69
Query: 62 TFIRGNNVL 70
FIR +N L
Sbjct: 70 AFIRASNSL 78
>gi|225680789|gb|EEH19073.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226292484|gb|EEH47904.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 6 SEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 65
Query: 62 TFIRGNNVLYIST 74
F+RGNN + ST
Sbjct: 66 AFVRGNNGIIHST 78
>gi|346978373|gb|EGY21825.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 84
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 49/68 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 17 SSFLSDIIGNAVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTKRRSYGDAFVRGN 76
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 77 NVMYISAD 84
>gi|413936988|gb|AFW71539.1| hypothetical protein ZEAMMB73_795769 [Zea mays]
Length = 67
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 44/47 (93%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L+CLDGYMNIA++QTEEY+NGQLKNKYGD FIRGN+VLYIS KR
Sbjct: 16 GILACLDGYMNIAMQQTEEYVNGQLKNKYGDAFIRGNDVLYISIFKR 62
>gi|70951963|ref|XP_745182.1| u6 snRNA-associated sm-like protein [Plasmodium chabaudi
chabaudi]
gi|56525424|emb|CAH79798.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
chabaudi chabaudi]
Length = 77
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V+V+L +G DY+G+L+CLD MN+ LEQTEEY +G+L KY D FIRGNNV
Sbjct: 9 FVQSLKGKTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRGNNV 68
Query: 70 LYI 72
YI
Sbjct: 69 FYI 71
>gi|242206420|ref|XP_002469066.1| predicted protein [Postia placenta Mad-698-R]
gi|220731931|gb|EED85771.1| predicted protein [Postia placenta Mad-698-R]
Length = 63
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L SGVDYRGVLSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNRYGDAFIR 60
Query: 66 GNN 68
GNN
Sbjct: 61 GNN 63
>gi|295672880|ref|XP_002796986.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282358|gb|EEH37924.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 6 SEGKDPSAFLTEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 65
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 66 AFVRGNN 72
>gi|321265650|ref|XP_003197541.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus gattii
WM276]
gi|317464021|gb|ADV25754.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
gattii WM276]
Length = 88
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 2/70 (2%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNK-YGDTFI 64
S S+F++ I G+ V V++ SGVDY GVL+CLDGYMN+ALEQ EE+ G++K YGD F+
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGVLTCLDGYMNVALEQAEEWA-GEVKTAVYGDCFL 74
Query: 65 RGNNVLYIST 74
RGNNVLYIS
Sbjct: 75 RGNNVLYISA 84
>gi|302666925|ref|XP_003025057.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
gi|291189139|gb|EFE44446.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
Length = 86
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG+++ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGD 66
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 67 AFVRGNN 73
>gi|302501452|ref|XP_003012718.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
gi|291176278|gb|EFE32078.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
Length = 86
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG+++ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGD 66
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 67 AFVRGNN 73
>gi|58262422|ref|XP_568621.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus neoformans
var. neoformans JEC21]
gi|134118926|ref|XP_771966.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818356|sp|P0CR25.1|LSM6_CRYNB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|338818357|sp|P0CR24.1|LSM6_CRYNJ RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|50254570|gb|EAL17319.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230795|gb|AAW47104.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 88
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S+F++ I G+ V V++ SGVDY G+L+CLDGYMN+ALEQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 66 GNNVLYIST 74
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>gi|291001797|ref|XP_002683465.1| predicted protein [Naegleria gruberi]
gi|284097094|gb|EFC50721.1| predicted protein [Naegleria gruberi]
Length = 72
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 12 QQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
I G+PV+VKL SG +YRGVL+CLDGYMN+ALEQT+EY++G YGD FIRGNN
Sbjct: 14 NDIVGKPVIVKLNSGAEYRGVLTCLDGYMNVALEQTKEYVDGVQTGTYGDAFIRGNN 70
>gi|405123901|gb|AFR98664.1| hypothetical protein CNAG_06426 [Cryptococcus neoformans var.
grubii H99]
Length = 88
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S+F++ I G+ V V++ SGVDY G+L+CLDGYMN+ALEQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 66 GNNVLYIST 74
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>gi|261201258|ref|XP_002627029.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239592088|gb|EEQ74669.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239611748|gb|EEQ88735.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis ER-3]
gi|327348237|gb|EGE77094.1| LSM domain-containing protein [Ajellomyces dermatitidis ATCC
18188]
Length = 87
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 7 SEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 66
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 67 AFVRGNN 73
>gi|121709856|ref|XP_001272544.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400694|gb|EAW11118.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 108
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALEQ++E+++G+L+ YGD FIRGN
Sbjct: 12 SAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGN 71
Query: 68 NVLYIS 73
N LY S
Sbjct: 72 NGLYHS 77
>gi|403416789|emb|CCM03489.1| predicted protein [Fibroporia radiculosa]
Length = 91
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 23 LVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
L SGVDYRGVLSCLDGYMNIALEQTEE+++G + N+YGD FIRGNN
Sbjct: 44 LTSGVDYRGVLSCLDGYMNIALEQTEEHVDGAVTNRYGDAFIRGNN 89
>gi|330794780|ref|XP_003285455.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
gi|325084630|gb|EGC38054.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
Length = 63
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F + RPVVVKL +GV+YRG+L +DG MNI +EQTEEY+NGQLK KYGD F+RGNN
Sbjct: 1 NFFKMCIRRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 60
>gi|119467878|ref|XP_001257745.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119405897|gb|EAW15848.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 98
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV YRG L +DGYMNIALE++EE+++G+L+ YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGN 72
Query: 68 NVL 70
N L
Sbjct: 73 NGL 75
>gi|46107150|ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
Length = 106
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV VKL SGV Y+G L +DGYMNIALE+T EY+NGQ + +YGD F+RGN
Sbjct: 15 SSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFVRGN 74
Query: 68 NVL 70
NV+
Sbjct: 75 NVM 77
>gi|350630884|gb|EHA19256.1| hypothetical protein ASPNIDRAFT_202763 [Aspergillus niger ATCC
1015]
Length = 77
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE++EE++NG+L YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEFVNGKLSRSYGDAFIRGN 72
Query: 68 NVL 70
N L
Sbjct: 73 NGL 75
>gi|357458899|ref|XP_003599730.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|357474717|ref|XP_003607643.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|358345437|ref|XP_003636784.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355488778|gb|AES69981.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355502719|gb|AES83922.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508698|gb|AES89840.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
Length = 196
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 11/57 (19%)
Query: 32 VLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN-----------VLYISTQKR 77
+L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FIRGNN VLYIST KR
Sbjct: 134 ILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNEIIEYFVFFDAVLYISTSKR 190
>gi|156099234|ref|XP_001615619.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804493|gb|EDL45892.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 77
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F++ + GR V+V+L +G D++G+L+CLD MN+ALEQTEE+ G+L Y D FIR
Sbjct: 5 SPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGELVESYYDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>gi|70991347|ref|XP_750522.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus fumigatus
Af293]
gi|66848155|gb|EAL88484.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus Af293]
gi|159124077|gb|EDP49195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus A1163]
Length = 98
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE++EE+++G+LK YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGN 72
Query: 68 NVL 70
N L
Sbjct: 73 NGL 75
>gi|402086460|gb|EJT81358.1| U6 snRNA-associated Sm-like protein LSm6 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 83
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ I G V VKL SGV Y+G L +DGYMNIALE+ EE++ GQ K YGD F+RGN
Sbjct: 15 TSFLSDIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGN 74
Query: 68 NVLYIST 74
NV+YI+
Sbjct: 75 NVMYIAA 81
>gi|389625893|ref|XP_003710600.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
gi|189028839|sp|A4RQ29.1|LSM6_MAGO7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|351650129|gb|EHA57988.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
Length = 83
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ +I G V VKL SGV Y+G L +DGYMNIALE+ EE++ GQ K YGD F+RGN
Sbjct: 15 TSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGN 74
Query: 68 NVLYIST 74
NV+YI+
Sbjct: 75 NVMYIAA 81
>gi|342889202|gb|EGU88369.1| hypothetical protein FOXB_01168 [Fusarium oxysporum Fo5176]
Length = 77
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G PV VKL SGV Y+G L +DGYMNIALE+T EY+NGQ + +YGD F+RGN
Sbjct: 15 SSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|336272335|ref|XP_003350924.1| hypothetical protein SMAC_04229 [Sordaria macrospora k-hell]
Length = 93
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 51/79 (64%), Gaps = 11/79 (13%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLS-----------CLDGYMNIALEQTEEYINGQLK 56
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEYING +
Sbjct: 15 SGFLSEIIGNPVTVKLNSGVVYKGRLGWGALGGTGELQSVDGYMNIALEKTEEYINGVKR 74
Query: 57 NKYGDTFIRGNNVLYISTQ 75
YGD F+RGNNV+YIS
Sbjct: 75 RSYGDAFVRGNNVMYISAD 93
>gi|221058891|ref|XP_002260091.1| u6 snRNA-associated sm-like protein [Plasmodium knowlesi strain
H]
gi|193810164|emb|CAQ41358.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
knowlesi strain H]
Length = 77
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F+Q + GR V+V+L +G D++G+L+CLD MN+ALEQTEE+ G+ Y D FIR
Sbjct: 5 SPKDFVQSLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFVGSYYDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>gi|116206862|ref|XP_001229240.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183321|gb|EAQ90789.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 93
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|300123335|emb|CBK24608.2| unnamed protein product [Blastocystis hominis]
Length = 79
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 1 MSRKESL-SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY 59
MS ++ + S+FI ++G+PV++ L +GV Y+G+L LDG++N+ LEQ EEY +G+ ++
Sbjct: 1 MSAEDKVNSEFIASVYGKPVIIGLFTGVIYKGILGSLDGFLNVVLEQAEEYNDGKFVARF 60
Query: 60 GDTFIRGNNVLYISTQKR 77
D F+RGNN++YI+
Sbjct: 61 NDCFLRGNNIMYIAPNDE 78
>gi|164422788|ref|XP_001727995.1| hypothetical protein NCU10352 [Neurospora crassa OR74A]
gi|157069821|gb|EDO64904.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 105
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 48/67 (71%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEE+ING + YGD
Sbjct: 9 SEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGD 68
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 69 AFVRGNN 75
>gi|448508183|ref|XP_003865891.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
gi|380350229|emb|CCG20449.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
Length = 79
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S+F+ + G PV VKL SGV+YRG L +DGYMN+ LE +E+ING + YGD F+RGN
Sbjct: 12 SKFLGDLIGSPVRVKLYSGVEYRGDLQTIDGYMNVVLENGKEFINGDVTRDYGDLFLRGN 71
Query: 68 NVLYIS 73
VLYI+
Sbjct: 72 TVLYIT 77
>gi|399217445|emb|CCF74332.1| unnamed protein product [Babesia microti strain RI]
Length = 84
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 7/78 (8%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S FI + PVVV+L +G +++G+L+CLD MNI++E T+EYING L +YGD+FIR
Sbjct: 5 SPSSFITSVTRNPVVVRLNNGSNFKGILACLDERMNISMENTKEYINGVLVKEYGDSFIR 64
Query: 66 GNN-------VLYISTQK 76
GNN VLYI T
Sbjct: 65 GNNGKCLVYLVLYIRTDN 82
>gi|361131665|gb|EHL03317.1| putative U6 snRNA-associated Sm-like protein LSm6 [Glarea
lozoyensis 74030]
Length = 106
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G V VKL SGV Y+G L +DGYMNIALE+TEE++NG K YGD F+RGN
Sbjct: 15 SGFLSEIIGSQVTVKLNSGVVYKGELQSVDGYMNIALEKTEEHVNGVKKRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
N + IS +
Sbjct: 75 NGVRISKE 82
>gi|340520476|gb|EGR50712.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G VVVKL SGV Y+G L +DGYMNIALE+T EY+NG + +YGDTF+RGN
Sbjct: 15 SSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRREYGDTFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|452822853|gb|EME29869.1| small nuclear ribonucleoprotein F isoform 2 [Galdieria
sulphuraria]
gi|452822854|gb|EME29870.1| small nuclear ribonucleoprotein F isoform 1 [Galdieria
sulphuraria]
Length = 90
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+P++VKL G++YRG+L LD YMN+ L QTEE+ING++ K GD IR NNV
Sbjct: 16 FLHDLVGKPLIVKLKWGLEYRGLLVSLDSYMNLQLTQTEEWINGKMAGKLGDVLIRCNNV 75
Query: 70 LYI 72
LY+
Sbjct: 76 LYV 78
>gi|221486867|gb|EEE25113.1| snRNA-associated Sm-like protein, putative [Toxoplasma gondii
GT1]
Length = 84
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S K+S S F+Q++ G+ VVV+L +G DYRGVL+CLD MNIA+++ EE+++G YG
Sbjct: 4 SAKKSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKAEEFVDGNFVAAYGL 63
Query: 62 TFIRGNN 68
+ IRGNN
Sbjct: 64 SLIRGNN 70
>gi|403221355|dbj|BAM39488.1| uncharacterized protein TOT_010000943 [Theileria orientalis
strain Shintoku]
Length = 79
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
SQ+I I + VVVKL +G DY+G+L+ LD MN+A+E T EY++G+ YGD FIRGN
Sbjct: 7 SQYISSILRKNVVVKLYNGCDYKGILAGLDERMNLAMEDTAEYLDGKHVKTYGDAFIRGN 66
Query: 68 NVLYISTQKR 77
NV YIS ++
Sbjct: 67 NVYYISHDRK 76
>gi|145508998|ref|XP_001440443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407660|emb|CAK73046.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K + + F +Q+ GR V VKL + +Y GVL+ LDG MN+ LEQ EEY+ +L NKYG
Sbjct: 5 KRTSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYGQIL 64
Query: 64 IRGNNVLYISTQ 75
+RGNNVLYIS +
Sbjct: 65 LRGNNVLYISAK 76
>gi|145535682|ref|XP_001453574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421296|emb|CAK86177.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K + + F +Q+ GR V VKL + +Y GVL+ LDG MN+ LEQ EEY+ +L NKYG
Sbjct: 5 KRTSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYGQIL 64
Query: 64 IRGNNVLYISTQ 75
+RGNNVLYIS +
Sbjct: 65 LRGNNVLYISAK 76
>gi|189194007|ref|XP_001933342.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330928710|ref|XP_003302375.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
gi|187978906|gb|EDU45532.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311322339|gb|EFQ89540.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
Length = 89
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E +G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVADGRVTRNWGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV YI
Sbjct: 80 NVTYICAD 87
>gi|189028861|sp|A6S5C9.2|LSM6_BOTFB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|347826617|emb|CCD42314.1| similar to U6 snRNA-associated Sm-like protein LSm6 [Botryotinia
fuckeliana]
Length = 85
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 NVLYISTQK 76
NV+YIS +
Sbjct: 75 NVMYISADE 83
>gi|428673255|gb|EKX74168.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 82
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S +I I +PV+VKL +G D+RG+L+ LD MNIA+E T+EY++G+L YGD FIR
Sbjct: 5 SPSAYINGITRKPVIVKLNNGSDFRGILASLDERMNIAMENTKEYLDGELVKTYGDAFIR 64
Query: 66 GNNVLYIS 73
GNN + S
Sbjct: 65 GNNGTFYS 72
>gi|189028852|sp|Q0UWI9.2|LSM6_PHANO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 89
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV YIS
Sbjct: 80 NVTYISAD 87
>gi|451998409|gb|EMD90873.1| hypothetical protein COCHEDRAFT_1194612 [Cochliobolus
heterostrophus C5]
Length = 89
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E +G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNWGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV YI
Sbjct: 80 NVTYICAD 87
>gi|451848599|gb|EMD61904.1| hypothetical protein COCSADRAFT_173298 [Cochliobolus sativus
ND90Pr]
Length = 89
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E +G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNWGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV YI
Sbjct: 80 NVTYICAD 87
>gi|189028856|sp|Q6BR90.2|LSM6_DEBHA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S S F+ +I G V V+L +GV+Y G L +DGYMNI L++T+E++ G YGD
Sbjct: 12 SENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGD 71
Query: 62 TFIRGNNVLYIS 73
FIRGNNVLYIS
Sbjct: 72 VFIRGNNVLYIS 83
>gi|189028855|sp|A5DRQ6.2|LSM6_LODEL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 1 MSRKESL-----SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL 55
MS ESL S+F+ I G V VKL +GV+Y+G L +DGYMN+ALE +E I+ ++
Sbjct: 1 MSEAESLDRIDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKV 60
Query: 56 KNKYGDTFIRGNNVLYIS 73
YGD F+RGNNVLYIS
Sbjct: 61 TKHYGDVFLRGNNVLYIS 78
>gi|440634891|gb|ELR04810.1| U6 snRNA-associated Sm-like protein LSm6 [Geomyces destructans
20631-21]
Length = 83
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I V VKL SGV Y+G L +DGYMNIALE E+++G + YGD FIRGN
Sbjct: 16 SGFLGEIINSAVTVKLNSGVVYKGSLQSVDGYMNIALENCTEHVDGARRRSYGDAFIRGN 75
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 76 NVMYISAD 83
>gi|354544771|emb|CCE41496.1| hypothetical protein CPAR2_800480 [Candida parapsilosis]
Length = 79
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S+F+ + G PV VKL SGV+YRG L +DGYMN+ LE +E+I + YGD F+RGN
Sbjct: 12 SKFLGDLIGSPVKVKLYSGVEYRGDLQTIDGYMNVVLENGKEFIKDTMTRDYGDLFLRGN 71
Query: 68 NVLYIS 73
VLYI+
Sbjct: 72 TVLYIT 77
>gi|241957822|ref|XP_002421630.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
gi|223644975|emb|CAX39567.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
Length = 80
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
K S+F+ I G V VKL +GV+Y+G L +DG+MN+ L++ E +NG++ +YGD
Sbjct: 8 EKTDPSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGIETVNGKVTKEYGDV 67
Query: 63 FIRGNNVLYIS 73
FIRGNNVLYIS
Sbjct: 68 FIRGNNVLYIS 78
>gi|298713466|emb|CBJ27021.1| Sm-like protein LSm6 [Ectocarpus siliculosus]
Length = 125
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 21/75 (28%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K S S F++ + GRPVVVKL SG+DYRGVL CLDGYMNIA+EQT
Sbjct: 72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT---------------- 115
Query: 64 IRGNNVLYISTQKRR 78
VLYISTQ+RR
Sbjct: 116 -----VLYISTQRRR 125
>gi|406605529|emb|CCH43042.1| hypothetical protein BN7_2589 [Wickerhamomyces ciferrii]
Length = 112
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
QFI I G V+VKL SG +Y G L +DGYMNI LE+T+E ++ ++ KYGD FIRGNN
Sbjct: 16 QFISNISGAKVIVKLYSGEEYHGTLDSIDGYMNITLEETQEVVSDKVTRKYGDVFIRGNN 75
>gi|344304341|gb|EGW34590.1| U6 snRNA-associated Sm-like protein LSm6 [Spathaspora
passalidarum NRRL Y-27907]
Length = 77
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
K S+F+ I G V+VKL +G++Y G L +DGYMN+ L+ +E NG++ YGD
Sbjct: 5 EKTDPSKFLSDIIGSSVIVKLQNGINYTGNLQTIDGYMNVVLDNAKECSNGKVVRDYGDV 64
Query: 63 FIRGNNVLYIS 73
FIRGNNVLYIS
Sbjct: 65 FIRGNNVLYIS 75
>gi|189028853|sp|A7F5M4.2|LSM6_SCLS1 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>gi|71033743|ref|XP_766513.1| U6 small nuclear ribonucleoprotein [Theileria parva strain
Muguga]
gi|68353470|gb|EAN34230.1| U6 small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 77
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S +I I +PV+VKL +G D++G L+ LD MN+A+E T E+++G + YGD FIRGN
Sbjct: 7 SAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFLDGVMVKSYGDAFIRGN 66
Query: 68 NVLYISTQKR 77
NV YIS +
Sbjct: 67 NVYYISHDPK 76
>gi|440468641|gb|ELQ37792.1| LSM domain-containing protein [Magnaporthe oryzae Y34]
gi|440478854|gb|ELQ59653.1| LSM domain-containing protein [Magnaporthe oryzae P131]
Length = 76
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ +I G V VKL SGV Y+G L +DGYMNIALE+ EE++ GQ K YGD F+RGN
Sbjct: 15 TSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|301090416|ref|XP_002895423.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
gi|262098675|gb|EEY56727.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
Length = 98
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PVV +L G++Y+GVL +D YMN+ L TEEYING+L G+T +R NN
Sbjct: 10 PFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGETLVRCNN 69
Query: 69 VLYI 72
VL+I
Sbjct: 70 VLFI 73
>gi|348673489|gb|EGZ13308.1| hypothetical protein PHYSODRAFT_316641 [Phytophthora sojae]
Length = 98
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PVV +L G++Y+GVL +D YMN+ L TEEYING+L G+T +R NN
Sbjct: 10 PFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGETLVRCNN 69
Query: 69 VLYI 72
VL+I
Sbjct: 70 VLFI 73
>gi|258568810|ref|XP_002585149.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
gi|237906595|gb|EEP80996.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ I G V VKL SGV Y+ DGYMNIALE+T+EYI+G+L+N YGD
Sbjct: 7 SEGQDPSAFLSGITGASVTVKLNSGVVYK------DGYMNIALEKTQEYIDGKLRNSYGD 60
Query: 62 TFIRGNNV 69
F+RGNN
Sbjct: 61 VFVRGNNA 68
>gi|156086636|ref|XP_001610727.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797980|gb|EDO07159.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 83
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S +I I +PV+VKL +G +RG+LS LD MN+A+E T+EY +G+L YGD+FIRGN
Sbjct: 7 SSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSFIRGN 66
Query: 68 N 68
N
Sbjct: 67 N 67
>gi|380815854|gb|AFE79801.1| small nuclear ribonucleoprotein F [Macaca mulatta]
Length = 86
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPHNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|297263296|ref|XP_002798787.1| PREDICTED: hypothetical protein LOC716917 [Macaca mulatta]
Length = 240
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 155 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 214
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 215 EVLIRCNNVLYI 226
>gi|403276113|ref|XP_003929758.1| PREDICTED: uncharacterized protein LOC101045055 [Saimiri
boliviensis boliviensis]
Length = 209
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 124 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 183
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 184 EVLIRCNNVLYI 195
>gi|296212622|ref|XP_002752905.1| PREDICTED: small nuclear ribonucleoprotein F [Callithrix jacchus]
Length = 131
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 46 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 105
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 106 EVLIRCNNVLYI 117
>gi|397473639|ref|XP_003808313.1| PREDICTED: uncharacterized protein LOC100993647 [Pan paniscus]
Length = 207
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 122 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 181
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 182 EVLIRCNNVLYI 193
>gi|440903909|gb|ELR54499.1| Small nuclear ribonucleoprotein F, partial [Bos grunniens mutus]
Length = 113
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 28 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 87
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 88 EVLIRCNNVLYI 99
>gi|410965324|ref|XP_003989200.1| PREDICTED: uncharacterized protein LOC101091795 [Felis catus]
Length = 317
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 241 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 300
Query: 70 LYISTQKRRGV 80
LYI RGV
Sbjct: 301 LYI-----RGV 306
>gi|402887300|ref|XP_003907034.1| PREDICTED: uncharacterized protein LOC101012297 [Papio anubis]
Length = 254
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 178 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 237
Query: 70 LYISTQKRRGV 80
LYI RGV
Sbjct: 238 LYI-----RGV 243
>gi|395744685|ref|XP_002823653.2| PREDICTED: uncharacterized protein LOC100451758 [Pongo abelii]
Length = 293
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 217 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 276
Query: 70 LYISTQKRRGV 80
LYI RGV
Sbjct: 277 LYI-----RGV 282
>gi|395538237|ref|XP_003771091.1| PREDICTED: uncharacterized protein LOC100930019 [Sarcophilus
harrisii]
Length = 397
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 321 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 380
Query: 70 LYISTQKRRGV 80
LYI RGV
Sbjct: 381 LYI-----RGV 386
>gi|334348082|ref|XP_001371072.2| PREDICTED: hypothetical protein LOC100017542 [Monodelphis
domestica]
Length = 328
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 252 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 311
Query: 70 LYISTQKRRGV 80
LYI RGV
Sbjct: 312 LYI-----RGV 317
>gi|448079823|ref|XP_004194473.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359375895|emb|CCE86477.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S K S+F+ +I G V VKL +GV+Y G L +DGYMNI L++T+E ING + YGD
Sbjct: 12 SSKLDPSKFLSEIIGNAVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRTYGD 71
Query: 62 TFIRGNNVLYI 72
F+RGNN Y+
Sbjct: 72 VFLRGNNGKYL 82
>gi|388581808|gb|EIM22115.1| U6 snRNA-associated Sm-like protein LSm6 [Wallemia sebi CBS
633.66]
Length = 87
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY--INGQ-LKNKYG 60
K S S F++ I G+ VVVKL SG+ Y G+L CLDGYMN+ + E I G + + YG
Sbjct: 10 KGSPSAFLKAIVGKSVVVKLNSGLLYTGILQCLDGYMNLVITDVRESSGIAGSPITSTYG 69
Query: 61 DTFIRGNNVLYISTQK 76
+ FIRGNNVLYIS +
Sbjct: 70 EAFIRGNNVLYISAAE 85
>gi|355721060|gb|AES07139.1| small nuclear ribonucleoprotein polypeptide F [Mustela putorius
furo]
Length = 95
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 24 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 83
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 84 EVLIRCNNVLYI 95
>gi|74353864|gb|AAI02193.1| SNRPF protein [Bos taurus]
Length = 119
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 34 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 93
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 94 EVLIRCNNVLYI 105
>gi|410342317|gb|JAA40105.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 123
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 38 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 97
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 98 EVLIRCNNVLYI 109
>gi|41946811|gb|AAH66015.1| Snrpf protein, partial [Mus musculus]
Length = 112
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 27 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 86
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 87 EVLIRCNNVLYI 98
>gi|431905318|gb|ELK10363.1| Small nuclear ribonucleoprotein F [Pteropus alecto]
Length = 182
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 97 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 156
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 157 EVLIRCNNVLYI 168
>gi|344229144|gb|EGV61030.1| U6 snRNA-associated Sm-like protein LSm6 [Candida tenuis ATCC
10573]
gi|344229145|gb|EGV61031.1| hypothetical protein CANTEDRAFT_116192 [Candida tenuis ATCC
10573]
Length = 83
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK-NKYG 60
S K S F+ I G V VKL +GV Y G L +DG+MNI ++ T E+I G KYG
Sbjct: 9 SIKTDPSTFLSGIIGSKVSVKLNNGVSYVGNLQSIDGFMNIVMDTTAEFIGGAASGTKYG 68
Query: 61 DTFIRGNNVLYIS 73
D FIRGNNVLYIS
Sbjct: 69 DVFIRGNNVLYIS 81
>gi|443704311|gb|ELU01412.1| hypothetical protein CAPTEDRAFT_159680 [Capitella teleta]
Length = 86
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEE+I+G L G
Sbjct: 1 MAMPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLSGNLG 60
Query: 61 DTFIRGNNVLYI 72
+ FIR NNVLY+
Sbjct: 61 EVFIRCNNVLYV 72
>gi|74189295|dbj|BAE22683.1| unnamed protein product [Mus musculus]
Length = 86
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|354478551|ref|XP_003501478.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cricetulus
griseus]
Length = 169
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 84 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 143
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 144 EVLIRCNNVLYI 155
>gi|170088114|ref|XP_001875280.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650480|gb|EDR14721.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 82
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEEY +GQ G+ FIR NNV
Sbjct: 12 FLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEYQDGQSNGALGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein F [Homo sapiens]
gi|52346080|ref|NP_001005083.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|147903163|ref|NP_001080901.1| small nuclear ribonucleoprotein F [Xenopus laevis]
gi|186910249|ref|NP_001119563.1| small nuclear ribonucleoprotein F [Rattus norvegicus]
gi|254028189|ref|NP_081522.1| small nuclear ribonucleoprotein F [Mus musculus]
gi|298160925|ref|NP_001177142.1| small nuclear ribonucleoprotein polypeptide F [Sus scrofa]
gi|303324598|ref|NP_001181956.1| small nuclear ribonucleoprotein F [Bos taurus]
gi|118082523|ref|XP_416157.2| PREDICTED: small nuclear ribonucleoprotein F [Gallus gallus]
gi|301767736|ref|XP_002919282.1| PREDICTED: small nuclear ribonucleoprotein F-like [Ailuropoda
melanoleuca]
gi|338721167|ref|XP_003364320.1| PREDICTED: small nuclear ribonucleoprotein F-like [Equus
caballus]
gi|344266498|ref|XP_003405317.1| PREDICTED: small nuclear ribonucleoprotein F-like [Loxodonta
africana]
gi|348581020|ref|XP_003476276.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cavia
porcellus]
gi|395820047|ref|XP_003783389.1| PREDICTED: small nuclear ribonucleoprotein F [Otolemur garnettii]
gi|410047113|ref|XP_003313967.2| PREDICTED: small nuclear ribonucleoprotein F [Pan troglodytes]
gi|426225041|ref|XP_004006676.1| PREDICTED: small nuclear ribonucleoprotein F [Ovis aries]
gi|426373754|ref|XP_004053753.1| PREDICTED: small nuclear ribonucleoprotein F [Gorilla gorilla
gorilla]
gi|441626858|ref|XP_003259549.2| PREDICTED: small nuclear ribonucleoprotein F [Nomascus
leucogenys]
gi|54039569|sp|P62321.1|RUXF_XENLA RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237391|sp|P62306.1|RUXF_HUMAN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237394|sp|P62307.1|RUXF_MOUSE RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|166233535|sp|Q3T0Z8.2|RUXF_BOVIN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|225734044|pdb|3CW1|F Chain F, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734053|pdb|3CW1|Z Chain Z, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734062|pdb|3CW1|1 Chain 1, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734071|pdb|3CW1|2 Chain 2, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583604|pdb|3PGW|F Chain F, Crystal Structure Of Human U1 Snrnp
gi|315583613|pdb|3PGW|I Chain I, Crystal Structure Of Human U1 Snrnp
gi|332639438|pdb|2Y9A|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639445|pdb|2Y9A|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639452|pdb|2Y9A|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639462|pdb|2Y9B|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639469|pdb|2Y9B|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639476|pdb|2Y9B|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639486|pdb|2Y9C|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639493|pdb|2Y9C|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639500|pdb|2Y9C|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639510|pdb|2Y9D|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639517|pdb|2Y9D|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639524|pdb|2Y9D|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781213|pdb|3S6N|F Chain F, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302202|pdb|4F7U|F Chain F, Macromolecular Machine 6
gi|444302203|pdb|4F7U|I Chain I, Macromolecular Machine 6
gi|453055425|pdb|1VU2|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055433|pdb|1VU2|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055441|pdb|1VU2|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055449|pdb|1VU2|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055457|pdb|1VU2|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055465|pdb|1VU2|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453055477|pdb|1VU2|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|453055481|pdb|1VU3|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055489|pdb|1VU3|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055497|pdb|1VU3|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055505|pdb|1VU3|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055513|pdb|1VU3|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055521|pdb|1VU3|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056013|pdb|4F77|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453056021|pdb|4F77|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453056029|pdb|4F77|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453056037|pdb|4F77|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453056045|pdb|4F77|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453056053|pdb|4F77|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056065|pdb|4F77|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|806564|emb|CAA59688.1| Sm protein F [Homo sapiens]
gi|12842305|dbj|BAB25551.1| unnamed protein product [Mus musculus]
gi|33417283|gb|AAH56127.1| Snrpf-prov protein [Xenopus laevis]
gi|49900002|gb|AAH77006.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|71682561|gb|AAI00500.1| Snrpf protein [Mus musculus]
gi|89273434|emb|CAJ82339.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|119617954|gb|EAW97548.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_a
[Homo sapiens]
gi|124504507|gb|AAI28454.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|124504583|gb|AAI28453.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127796370|gb|AAH02505.3| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127799057|gb|AAH63397.2| SNRPF protein [Homo sapiens]
gi|148689615|gb|EDL21562.1| mCG4969 [Mus musculus]
gi|149067174|gb|EDM16907.1| rCG48672 [Rattus norvegicus]
gi|189053073|dbj|BAG34695.1| unnamed protein product [Homo sapiens]
gi|296487589|tpg|DAA29702.1| TPA: small nuclear ribonucleoprotein polypeptide F [Bos taurus]
gi|383412003|gb|AFH29215.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|384942318|gb|AFI34764.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|410214144|gb|JAA04291.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
gi|410287118|gb|JAA22159.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 86
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|403269393|ref|XP_003926727.1| PREDICTED: small nuclear ribonucleoprotein F-like [Saimiri
boliviensis boliviensis]
Length = 86
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|322708894|gb|EFZ00471.1| U6 snRNA-associated protein LSm6 [Metarhizium anisopliae ARSEF
23]
Length = 102
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 19/80 (23%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGV-------------------LSCLDGYMNIALEQTE 48
S F+ I G PV+VKL SGV Y+G L +DGYMNIALE+TE
Sbjct: 18 SSFLSDIIGNPVIVKLNSGVVYKGEALPETLPQRPVHDAHERRELQSVDGYMNIALEKTE 77
Query: 49 EYINGQLKNKYGDTFIRGNN 68
EYING+ + YGD F+RGNN
Sbjct: 78 EYINGKKRRDYGDAFVRGNN 97
>gi|48145619|emb|CAG33032.1| SNRPF [Homo sapiens]
Length = 86
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|345780722|ref|XP_539726.3| PREDICTED: uncharacterized protein LOC482609 [Canis lupus
familiaris]
Length = 316
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 240 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 299
Query: 70 LYI 72
LYI
Sbjct: 300 LYI 302
>gi|448084319|ref|XP_004195573.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359376995|emb|CCE85378.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S K S+F+ +I G V VKL +GV+Y G L +DGYMNI L++T+E ING + YGD
Sbjct: 12 SSKLDPSKFLSEIIGNSVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRAYGD 71
Query: 62 TFIRGNN 68
F+RGNN
Sbjct: 72 VFLRGNN 78
>gi|169601996|ref|XP_001794420.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
gi|111067960|gb|EAT89080.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVRGN 79
Query: 68 NVLYI 72
N L++
Sbjct: 80 NGLFL 84
>gi|389747075|gb|EIM88254.1| small nuclear ribonucleo protein SmF, partial [Stereum hirsutum
FP-91666 SS1]
Length = 84
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV VKL G++Y+G L DGYMN+ L TEE+ NG+ G+ FIR NNV
Sbjct: 9 FMQELTGKPVFVKLKWGLEYKGFLVSTDGYMNLQLANTEEFQNGESTGTLGEVFIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>gi|51468014|ref|NP_001003881.1| small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|318104944|ref|NP_001188176.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
gi|348521200|ref|XP_003448114.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oreochromis
niloticus]
gi|49619143|gb|AAT68156.1| small nuclear ribonucleoprotein F [Danio rerio]
gi|190336933|gb|AAI62363.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|190339458|gb|AAI62369.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|308321377|gb|ADO27840.1| small nuclear ribonucleoprotein f [Ictalurus furcatus]
gi|308323773|gb|ADO29022.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
Length = 86
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|406862548|gb|EKD15598.1| putative U6 snRNA-associated Sm-like protein LSm6 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 173
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G V VKL SGV Y+G L +DGYMN+ALE+ EE+++G + YGD F+RGN
Sbjct: 14 SGFLSEIIGSSVTVKLNSGVVYKGELQSIDGYMNLALEKCEEHVDGVKRRSYGDAFVRGN 73
Query: 68 N 68
N
Sbjct: 74 N 74
>gi|291389755|ref|XP_002711328.1| PREDICTED: SNRPF protein-like [Oryctolagus cuniculus]
Length = 102
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NN
Sbjct: 25 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 84
Query: 69 VLYI 72
VLYI
Sbjct: 85 VLYI 88
>gi|260800049|ref|XP_002594949.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
gi|229280187|gb|EEN50960.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
Length = 87
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NN
Sbjct: 10 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGALAGNLGEVLIRCNN 69
Query: 69 VLYI 72
VLYI
Sbjct: 70 VLYI 73
>gi|432943738|ref|XP_004083261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oryzias
latipes]
Length = 86
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|320581302|gb|EFW95523.1| hypothetical protein HPODL_2857 [Ogataea parapolymorpha DL-1]
Length = 72
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S F+ ++ PVVVKL G++Y GVL+ +DGYMN+ L+ T E + Y + F+R
Sbjct: 3 STSNFLAEMTNSPVVVKLQHGLEYHGVLASIDGYMNVVLKDTVEMVENNKVRNYEEVFLR 62
Query: 66 GNNVLYIS 73
GNNVLYIS
Sbjct: 63 GNNVLYIS 70
>gi|255088585|ref|XP_002506215.1| predicted protein [Micromonas sp. RCC299]
gi|226521486|gb|ACO67473.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ Q+ G+P++VKL G++Y+G L D YMN+ L TEEY++G+ G+ IR NNV
Sbjct: 12 FLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNV 71
Query: 70 LYISTQKRRG 79
LY+ + G
Sbjct: 72 LYLRGAEDEG 81
>gi|255722679|ref|XP_002546274.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
gi|240136763|gb|EER36316.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
Length = 102
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
K S+F+ I G V VKL +GV+Y+G L +DG+MN+ LE +E +NG + +YGD
Sbjct: 8 EKTDPSKFLSDIIGSLVTVKLHNGVEYKGNLQTIDGFMNVVLEDGKESVNGSITKEYGDV 67
Query: 63 FIRGNNVLY 71
FIRGNN +Y
Sbjct: 68 FIRGNNGMY 76
>gi|355564587|gb|EHH21087.1| Small nuclear ribonucleoprotein F, partial [Macaca mulatta]
Length = 86
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>gi|355786423|gb|EHH66606.1| Small nuclear ribonucleoprotein F, partial [Macaca fascicularis]
Length = 86
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NN
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 69 VLYI 72
VLYI
Sbjct: 69 VLYI 72
>gi|226531376|ref|NP_001150516.1| small nuclear ribonucleoprotein F [Zea mays]
gi|194696080|gb|ACF82124.1| unknown [Zea mays]
gi|195609436|gb|ACG26548.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195622854|gb|ACG33257.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195639814|gb|ACG39375.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413926377|gb|AFW66309.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935832|gb|AFW70383.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935833|gb|AFW70384.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYL 73
>gi|398395245|ref|XP_003851081.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
gi|339470960|gb|EGP86057.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
Length = 98
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYR-GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
S F+ +I G PV VKL SGV Y+ G L +DGYMNIALE T+E ++G+ + YGD F+RG
Sbjct: 19 SGFLSEIIGAPVTVKLNSGVVYKVGELQSVDGYMNIALEDTKEMVDGKQRRNYGDAFVRG 78
Query: 67 NN 68
NN
Sbjct: 79 NN 80
>gi|229365806|gb|ACQ57883.1| Small nuclear ribonucleoprotein F [Anoplopoma fimbria]
Length = 86
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+ KL G++Y+G L +DGYMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMAKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|326911717|ref|XP_003202202.1| PREDICTED: small nuclear ribonucleoprotein F-like, partial
[Meleagris gallopavo]
Length = 82
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NN
Sbjct: 5 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 64
Query: 69 VLYI 72
VLYI
Sbjct: 65 VLYI 68
>gi|396458410|ref|XP_003833818.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
gi|312210366|emb|CBX90453.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
Length = 106
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 17/82 (20%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVL-------SCL----------DGYMNIALEQTEEY 50
S F+ +I G PV VKL SG+ Y+GVL SCL DGYMNIALE+ E
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIIYKGVLARAQVTFSCLTSRIGELQSVDGYMNIALERCREV 79
Query: 51 INGQLKNKYGDTFIRGNNVLYI 72
G++ +GD F+RGNNV YI
Sbjct: 80 SEGRVTRNWGDAFVRGNNVTYI 101
>gi|226531954|ref|NP_001151866.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195650409|gb|ACG44672.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935831|gb|AFW70382.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 107
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 32 FLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNV 91
Query: 70 LYI 72
+Y+
Sbjct: 92 MYL 94
>gi|156392353|ref|XP_001636013.1| predicted protein [Nematostella vectensis]
gi|156223112|gb|EDO43950.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV++KL G++Y+G L +DGYMN+ L TEE+I+G L G+ IR NN
Sbjct: 11 PFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGALTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYV 74
>gi|302697029|ref|XP_003038193.1| hypothetical protein SCHCODRAFT_39758 [Schizophyllum commune
H4-8]
gi|300111890|gb|EFJ03291.1| hypothetical protein SCHCODRAFT_39758, partial [Schizophyllum
commune H4-8]
Length = 71
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +GQ G+ FIR NNV
Sbjct: 9 FLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGTLGEVFIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>gi|195639214|gb|ACG39075.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+P++VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYL 73
>gi|432118939|gb|ELK38247.1| Small nuclear ribonucleoprotein F [Myotis davidii]
Length = 86
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQPANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|238879521|gb|EEQ43159.1| hypothetical protein CAWG_01385 [Candida albicans WO-1]
Length = 92
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
K S+F+ I G V VKL +GV+Y+G L +DG+MN+ L++ +E +NG++ +YGD
Sbjct: 8 EKTDPSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGKETVNGKVTKEYGDV 67
Query: 63 FIRGNNVLY 71
FIRGNN +Y
Sbjct: 68 FIRGNNGMY 76
>gi|218190178|gb|EEC72605.1| hypothetical protein OsI_06076 [Oryza sativa Indica Group]
gi|222622299|gb|EEE56431.1| hypothetical protein OsJ_05599 [Oryza sativa Japonica Group]
Length = 146
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 71 FLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNV 130
Query: 70 LYI 72
LY+
Sbjct: 131 LYL 133
>gi|327272686|ref|XP_003221115.1| PREDICTED: small nuclear ribonucleoprotein F-like [Anolis
carolinensis]
Length = 140
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G + G+ IR NNV
Sbjct: 64 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAMSGHLGEVLIRCNNV 123
Query: 70 LYI 72
LYI
Sbjct: 124 LYI 126
>gi|77552373|gb|ABA95170.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
Length = 85
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G
Sbjct: 1 MTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLY+
Sbjct: 61 EILIRCNNVLYL 72
>gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|77552372|gb|ABA95169.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
gi|113645618|dbj|BAF28759.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|215693012|dbj|BAG88432.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186140|gb|EEC68567.1| hypothetical protein OsI_36896 [Oryza sativa Indica Group]
gi|222616369|gb|EEE52501.1| hypothetical protein OsJ_34703 [Oryza sativa Japonica Group]
Length = 86
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|116782528|gb|ABK22541.1| unknown [Picea sitchensis]
Length = 84
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa Japonica Group]
gi|50252055|dbj|BAD27986.1| putative small nuclear ribonucleoprotein polypeptide F [Oryza
sativa Japonica Group]
gi|113535599|dbj|BAF07982.1| Os02g0177500 [Oryza sativa Japonica Group]
Length = 86
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|385303090|gb|EIF47187.1| u6 snrna-associated sm-like protein [Dekkera bruxellensis
AWRI1499]
Length = 81
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S++ ++ I PV+VKL +G +Y G+LS +DG+MNI LE+ E + ++ Y + F+R
Sbjct: 12 SVANYLSGITSSPVIVKLNNGFEYHGILSSIDGFMNIVLEKCSEQVGSKVVKNYNELFLR 71
Query: 66 GNNVLYIS 73
GNNV+YIS
Sbjct: 72 GNNVMYIS 79
>gi|242007618|ref|XP_002424631.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212508097|gb|EEB11893.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 87
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEEYI+GQ G+ +R NN
Sbjct: 10 PFLNSLTGKPVMVKLKWGQEYKGYLVSVDGYMNLQLANTEEYISGQPTGSLGEVLVRCNN 69
Query: 69 VLYI 72
VLYI
Sbjct: 70 VLYI 73
>gi|395817616|ref|XP_003782261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 86
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+ L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKDYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>gi|84998126|ref|XP_953784.1| U6 snRNA-associated Sm-lke protein [Theileria annulata]
gi|65304781|emb|CAI73106.1| U6 snRNA-associated Sm-lke protein, putative [Theileria annulata]
Length = 76
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
S S +I I +PV+VKL +G D+ G L+ LD MN+A+E T EY++G L YGD
Sbjct: 2 ENSSPSAYISSITRKPVLVKLNNGSDFTGTLASLDERMNLAMENTCEYLDGVLVKSYGDA 61
Query: 63 FIRGNNVLY 71
FIRGNN ++
Sbjct: 62 FIRGNNGIF 70
>gi|291244974|ref|XP_002742366.1| PREDICTED: Snrpf protein-like [Saccoglossus kowalevskii]
Length = 88
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEE+I+G L G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLTGNLGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|403416704|emb|CCM03404.1| predicted protein [Fibroporia radiculosa]
Length = 88
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
FIQ++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 FIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|47218337|emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 87
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEE+++G L G+ IR NN
Sbjct: 10 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRCNN 69
Query: 69 VLYI 72
VLYI
Sbjct: 70 VLYI 73
>gi|410918663|ref|XP_003972804.1| PREDICTED: small nuclear ribonucleoprotein F-like [Takifugu
rubripes]
Length = 88
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEE+++G L G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|221220004|gb|ACM08663.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 90
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|449550066|gb|EMD41031.1| hypothetical protein CERSUDRAFT_37798, partial [Ceriporiopsis
subvermispora B]
Length = 77
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
FIQ++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 9 FIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>gi|242208547|ref|XP_002470124.1| predicted protein [Postia placenta Mad-698-R]
gi|220730876|gb|EED84727.1| predicted protein [Postia placenta Mad-698-R]
Length = 71
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
FIQ++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 9 FIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>gi|258597322|ref|XP_001347951.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
gi|254832663|gb|AAN35864.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G V++KL G++Y+G+L DGYMNI L EE+I+G+ K G+ F+R NN
Sbjct: 12 PFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRCNN 71
Query: 69 VLYI 72
+LYI
Sbjct: 72 ILYI 75
>gi|357123340|ref|XP_003563369.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYL 73
>gi|356562363|ref|XP_003549441.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
Length = 88
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|255626597|gb|ACU13643.1| unknown [Glycine max]
Length = 88
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|299747331|ref|XP_001836960.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
gi|298407471|gb|EAU84577.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
Length = 81
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 11 FLQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|225715690|gb|ACO13691.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|221221134|gb|ACM09228.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|388514177|gb|AFK45150.1| unknown [Lotus japonicus]
Length = 88
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYL 73
>gi|395330543|gb|EJF62926.1| small nuclear ribonucleo protein SmF [Dichomitus squalens
LYAD-421 SS1]
Length = 87
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 FMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|384248919|gb|EIE22402.1| small nuclear ribo protein F [Coccomyxa subellipsoidea C-169]
Length = 85
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV++KL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 11 PFLNGLTGKPVIIKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYM 74
>gi|357137844|ref|XP_003570509.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYM 73
>gi|356575227|ref|XP_003555743.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
gi|255628071|gb|ACU14380.1| unknown [Glycine max]
Length = 88
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI GQ G+ IR NNV
Sbjct: 11 FLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|336373399|gb|EGO01737.1| hypothetical protein SERLA73DRAFT_132214 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386230|gb|EGO27376.1| hypothetical protein SERLADRAFT_382079 [Serpula lacrymans var.
lacrymans S7.9]
Length = 80
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 FMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|196008042|ref|XP_002113887.1| hypothetical protein TRIADDRAFT_26794 [Trichoplax adhaerens]
gi|190584291|gb|EDV24361.1| hypothetical protein TRIADDRAFT_26794, partial [Trichoplax
adhaerens]
Length = 81
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G+DY+G L +D YMN+ L TEEY+ G L G+ IR NN
Sbjct: 8 PFLNGLTGKPVLVKLKWGMDYKGFLVSVDNYMNLQLANTEEYVEGALTGNLGEVLIRCNN 67
Query: 69 VLYI 72
VLY+
Sbjct: 68 VLYV 71
>gi|345795922|ref|XP_003434099.1| PREDICTED: small nuclear ribonucleoprotein F-like [Canis lupus
familiaris]
Length = 126
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F + G+PV VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NN
Sbjct: 49 PFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 108
Query: 69 VLYI 72
VLYI
Sbjct: 109 VLYI 112
>gi|241735825|ref|XP_002413964.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215507818|gb|EEC17272.1| membrane-associated protein, putative [Ixodes scapularis]
gi|346470799|gb|AEO35244.1| hypothetical protein [Amblyomma maculatum]
gi|346470801|gb|AEO35245.1| hypothetical protein [Amblyomma maculatum]
gi|442748773|gb|JAA66546.1| Putative small nuclear ribonucleoprotein polypeptide f [Ixodes
ricinus]
Length = 87
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G G+ +R NN
Sbjct: 10 PFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYV 73
>gi|241610412|ref|XP_002406902.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215502736|gb|EEC12230.1| membrane-associated protein, putative [Ixodes scapularis]
Length = 84
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G G+ +R NN
Sbjct: 10 PFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYV 73
>gi|198432767|ref|XP_002124025.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
F [Ciona intestinalis]
Length = 87
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEE++ G L G+ IR NN
Sbjct: 10 PFLNGLTGKPVLVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVEGALSGHLGEILIRCNN 69
Query: 69 VLYI 72
VLYI
Sbjct: 70 VLYI 73
>gi|313235935|emb|CBY25078.1| unnamed protein product [Oikopleura dioica]
Length = 88
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV VKL G++Y+G L +DGYMN+ L +EEYI+G L G+ IR NN
Sbjct: 11 PFLNSLTGKPVQVKLKWGMEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|427786011|gb|JAA58457.1| Putative small nuclear ribonucleoprotein polypeptide f
[Rhipicephalus pulchellus]
Length = 87
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G G+ +R NN
Sbjct: 10 PFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLLRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYV 73
>gi|15234669|ref|NP_194751.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|297798954|ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297836060|ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|5730132|emb|CAB52466.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|7269922|emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|21593208|gb|AAM65157.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|30102544|gb|AAP21190.1| At4g30220 [Arabidopsis thaliana]
gi|110743810|dbj|BAE99740.1| snRNP Sm protein F - like [Arabidopsis thaliana]
gi|297313197|gb|EFH43620.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297331752|gb|EFH62171.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|332660339|gb|AEE85739.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 88
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQL G+ IR NNV
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYV 73
>gi|334187031|ref|NP_001190872.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|332660340|gb|AEE85740.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 96
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQL G+ IR NNV
Sbjct: 19 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNV 78
Query: 70 LYI 72
LY+
Sbjct: 79 LYV 81
>gi|225468340|ref|XP_002272246.1| PREDICTED: probable small nuclear ribonucleoprotein F [Vitis
vinifera]
gi|296083390|emb|CBI23345.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +D YMN+ L +EEYI+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|189028862|sp|Q6FYB6.2|LSM6_CANGA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 79
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---NGQLKN 57
M+ + +QF+ I G+PV VKL SG+ Y GVL +DG+MN+AL +T E+ N L
Sbjct: 1 MAEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNLLK 60
Query: 58 KYG-DTFIRGNNVLYIS 73
KY D F+RG V+YIS
Sbjct: 61 KYASDVFLRGTQVMYIS 77
>gi|390336861|ref|XP_796806.3| PREDICTED: small nuclear ribonucleoprotein F-like
[Strongylocentrotus purpuratus]
Length = 88
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+V+L G++Y+G L +DGYMN+ L TEEYI+G G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVRLKWGMEYKGYLVSVDGYMNVQLASTEEYIDGTFTGNLGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|302309610|ref|XP_002999513.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049225|emb|CAR57997.1| unnamed protein product [Candida glabrata]
Length = 115
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---NGQLKN 57
M+ + +QF+ I G+PV VKL SG+ Y GVL +DG+MN+AL +T E+ N L
Sbjct: 37 MAEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNLLK 96
Query: 58 KYG-DTFIRGNNVLYIS 73
KY D F+RG V+YIS
Sbjct: 97 KYASDVFLRGTQVMYIS 113
>gi|405969415|gb|EKC34388.1| Small nuclear ribonucleoprotein F [Crassostrea gigas]
Length = 82
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G G+ IR NNV
Sbjct: 6 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGAQTGNLGEVLIRCNNV 65
Query: 70 LYI 72
LYI
Sbjct: 66 LYI 68
>gi|167516518|ref|XP_001742600.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779224|gb|EDQ92838.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+P++VKL G++Y+GVL D YMN+ L TEEY++G + G+ IR NNV
Sbjct: 38 FLAGLTGKPILVKLKWGMEYKGVLKASDQYMNLQLLNTEEYVDGSMTGALGEVLIRCNNV 97
Query: 70 LYIST 74
LYI +
Sbjct: 98 LYIRS 102
>gi|154308522|ref|XP_001553597.1| hypothetical protein BC1G_08321 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|392568679|gb|EIW61853.1| small nuclear ribonucleo protein SmF [Trametes versicolor
FP-101664 SS1]
Length = 79
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
++Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 YMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 71
Query: 70 LYISTQK 76
LYI K
Sbjct: 72 LYIREAK 78
>gi|391341913|ref|XP_003745271.1| PREDICTED: small nuclear ribonucleoprotein F-like [Metaseiulus
occidentalis]
Length = 87
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ G+PV+VKL G++Y+G L +DGYMN+ L TEE+I+G G+ +R NN
Sbjct: 10 PFLNSFTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGSCTGNLGEVLVRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYV 73
>gi|392592920|gb|EIW82246.1| small nuclear ribo protein F, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 77
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 9 FLQDLTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>gi|221219120|gb|ACM08221.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|221219208|gb|ACM08265.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|225714736|gb|ACO13214.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 87
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVL+I
Sbjct: 61 EVLVRCNNVLFI 72
>gi|255717166|ref|XP_002554864.1| KLTH0F15620p [Lachancea thermotolerans]
gi|238936247|emb|CAR24427.1| KLTH0F15620p [Lachancea thermotolerans CBS 6340]
Length = 84
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKN 57
S + +QF+ I G+ VVVKL +G+ Y+GVL +DG+MNIAL Q E+ NG L
Sbjct: 7 STTTASAQFLSNIIGQSVVVKLHNGMLYQGVLESIDGFMNIALNQATEHYETASNGLLHR 66
Query: 58 KYGDTFIRGNNVLYIS 73
GD F+RG VLYIS
Sbjct: 67 YDGDVFVRGTQVLYIS 82
>gi|339233708|ref|XP_003381971.1| ribonucleo protein F [Trichinella spiralis]
gi|316979158|gb|EFV61986.1| ribonucleo protein F [Trichinella spiralis]
Length = 82
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L D YMN+ L TEEY NG L G+ IR NN
Sbjct: 6 PFLINLTGKPVIVKLKWGPEYKGYLISTDNYMNVQLAHTEEYTNGTLAGNLGEVLIRCNN 65
Query: 69 VLYI 72
VLYI
Sbjct: 66 VLYI 69
>gi|209736898|gb|ACI69318.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVL+I
Sbjct: 61 EVLVRCNNVLFI 72
>gi|242056189|ref|XP_002457240.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
gi|241929215|gb|EES02360.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
Length = 86
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGYLTSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|321478414|gb|EFX89371.1| hypothetical protein DAPPUDRAFT_220519 [Daphnia pulex]
Length = 88
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+P++VKL G +Y+G L +DGYMN+ L TEEYI+G G+ +R NN
Sbjct: 11 PFLNALTGKPIMVKLKWGHEYKGYLVSVDGYMNLQLANTEEYIDGSCTGNLGEVLVRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|159479232|ref|XP_001697697.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
gi|158274065|gb|EDO99849.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
Length = 85
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V+VKL G++Y+G L D YMN+ L TEEYI+GQ + G+ IR NNV
Sbjct: 12 FLQDLTGKQVIVKLKWGMEYKGYLVSTDSYMNLQLASTEEYIDGQFTGQLGEVLIRCNNV 71
Query: 70 LYI 72
+Y+
Sbjct: 72 MYL 74
>gi|302843278|ref|XP_002953181.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
gi|300261568|gb|EFJ45780.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
Length = 85
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V+VKL G++Y+G L D YMN+ L TEE+I+GQ + G+ IR NNV
Sbjct: 12 FLQDLTGKQVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEFIDGQFTGQLGEVLIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|149246105|ref|XP_001527522.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447476|gb|EDK41864.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 80
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 1 MSRKESL-----SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL 55
MS ESL S+F+ I G V VKL +GV+Y+G L +DGYMN+ALE +E I+ ++
Sbjct: 1 MSEAESLDRIDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKV 60
Query: 56 KNKYGDTFIRGNN 68
YGD F+RGNN
Sbjct: 61 TKHYGDVFLRGNN 73
>gi|443924091|gb|ELU43165.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 81
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q++ G+PV V+L G++Y+G L D YMN+ L TEE+ +G+ G+ FIR NN
Sbjct: 11 PFLQELTGKPVFVRLKWGLEYKGYLVSTDSYMNLQLANTEEFEDGKSNGALGEVFIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|393215596|gb|EJD01087.1| small nuclear ribonucleo protein SmF [Fomitiporia mediterranea
MF3/22]
Length = 85
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+ V V+L G++Y+G L DGYMN+ L TEE+ +GQ G+ FIR NNV
Sbjct: 12 FLQELTGKSVCVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGALGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|281211679|gb|EFA85841.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 85
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 1 MSRKESLSQ--FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
M++ ESLS F+ ++ G+ V V+L G++YRG+L+ +D YMN+ L TEE+I+G + +
Sbjct: 1 MNKVESLSPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGAIID 60
Query: 58 KYGDTFIRGNNVLYI 72
G+ IR NNVLY+
Sbjct: 61 TLGEVLIRCNNVLYV 75
>gi|358057300|dbj|GAA96649.1| hypothetical protein E5Q_03320 [Mixia osmundae IAM 14324]
Length = 114
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q G+PV V+L G++YRG L +D YMN+ L TEEY N Q G+ FIR NNV
Sbjct: 11 FLQDRVGKPVQVRLKWGMEYRGYLVSIDNYMNLQLANTEEYQNDQPAGSLGEVFIRCNNV 70
Query: 70 LYISTQKR 77
LY+ R
Sbjct: 71 LYMYETPR 78
>gi|50421459|ref|XP_459280.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
gi|49654947|emb|CAG87454.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
Length = 84
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S S F+ +I G V V+L +GV+Y G L +DGYMNI L++T+E++ G YGD
Sbjct: 12 SENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGD 71
Query: 62 TFIRGNN 68
FIRGNN
Sbjct: 72 VFIRGNN 78
>gi|403172479|ref|XP_003331594.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375169870|gb|EFP87175.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 121
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ VVKL G++Y+G L +D YMN+ L TEEY NGQ G+ FIR NNV
Sbjct: 12 FLQDLTGKECVVKLKWGMEYKGYLVSVDNYMNLQLANTEEYQNGQSVGSLGEVFIRCNNV 71
Query: 70 LYISTQKRR 78
LY + + +
Sbjct: 72 LYSTNESSK 80
>gi|357479653|ref|XP_003610112.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355511167|gb|AES92309.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|388505566|gb|AFK40849.1| unknown [Medicago truncatula]
Length = 88
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEEYI G G+ IR NN
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNN 69
Query: 69 VLYI 72
VLY+
Sbjct: 70 VLYM 73
>gi|449456561|ref|XP_004146017.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
gi|449503654|ref|XP_004162110.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 88
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VVVKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|31212897|ref|XP_312266.1| AGAP002658-PA [Anopheles gambiae str. PEST]
gi|30177439|gb|EAA07677.2| AGAP002658-PA [Anopheles gambiae str. PEST]
Length = 88
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV++KL G +Y+G L +DGYMN+ L TEE+++GQ G+ IR NNV
Sbjct: 12 FLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|224143719|ref|XP_002325051.1| predicted protein [Populus trichocarpa]
gi|222866485|gb|EEF03616.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|367001911|ref|XP_003685690.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
gi|357523989|emb|CCE63256.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
Length = 81
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY----INGQLKNKYGDTF 63
SQF+ I G+PV VKL SG+ Y G L +DG+MNIAL T E+ NG L+ D F
Sbjct: 10 SQFLSNIIGKPVNVKLYSGMLYNGKLESIDGFMNIALSNTTEHYENNANGMLRRYENDVF 69
Query: 64 IRGNNVLYIS 73
+RG V+YIS
Sbjct: 70 LRGTQVMYIS 79
>gi|242064206|ref|XP_002453392.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
gi|241933223|gb|EES06368.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
Length = 86
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKFVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|156036426|ref|XP_001586324.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980]
gi|154698307|gb|EDN98045.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 95
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 N 68
N
Sbjct: 75 N 75
>gi|303274735|ref|XP_003056683.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461035|gb|EEH58328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ Q+ G+ ++VKL G++Y+G L D YMN+ L TEEYI+G+ G+ IR NNV
Sbjct: 12 FLNQLTGKAIIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGKFAGNLGEVLIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|219118381|ref|XP_002179965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408222|gb|EEC48156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V VKL G++Y+GVL+ D YMN+ L TEE+++GQ GD IR NNV
Sbjct: 11 FLVDLTGKTVKVKLKWGMEYQGVLAAADAYMNLQLSATEEFLDGQFAGFLGDVLIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYV 73
>gi|170032813|ref|XP_001844274.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
gi|167873231|gb|EDS36614.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
Length = 88
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV++KL G +Y+G L +DGYMN+ L T+EY++GQ G+ IR NNV
Sbjct: 12 FLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTDEYVDGQNTGHLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|308808123|ref|XP_003081372.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
gi|116059834|emb|CAL55541.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
Length = 836
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V V+L G++YRG L D YMN+ L TEEYI+G+L+ G+ IR NNV
Sbjct: 767 FLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTEEYIDGELQGALGEVLIRCNNV 826
Query: 70 LYISTQKRRGV 80
+Y+ RGV
Sbjct: 827 MYL-----RGV 832
>gi|298710621|emb|CBJ32049.1| Small nuclear ribonucleoprotein SmF [Ectocarpus siliculosus]
Length = 101
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRG-VLSCLDGYMNIALEQTEEYINGQLKNKY 59
M+ + F+ ++ G+PV+VKL G++Y+G L +D YMN+ L TEEY++G+
Sbjct: 1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNL 60
Query: 60 GDTFIRGNNVLYI 72
GD IR NNVLY+
Sbjct: 61 GDVLIRCNNVLYL 73
>gi|312371148|gb|EFR19407.1| hypothetical protein AND_30966 [Anopheles darlingi]
Length = 88
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV++KL G +Y+G L +DGYMN+ L TEE+++GQ G+ IR NNV
Sbjct: 12 FLNGLTGKPVMIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|221484764|gb|EEE23058.1| hypothetical protein TGGT1_039230 [Toxoplasma gondii GT1]
Length = 117
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + GR V+VKL G++Y+G L D YMN+ L+ TEE+++G K G+ +R NNV
Sbjct: 42 FLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGHLGEVLLRCNNV 101
Query: 70 LYI 72
LY+
Sbjct: 102 LYL 104
>gi|367013088|ref|XP_003681044.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
gi|359748704|emb|CCE91833.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
Length = 82
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ-TEEYINGQ---LKNKYGDTF 63
SQF+ +I G+PV VKL SG+ Y G L +DG+MN+AL + TE Y NG L+N D F
Sbjct: 11 SQFLSEIIGKPVNVKLHSGMLYSGRLESIDGFMNVALSKVTEHYENGHNGLLRNYNTDVF 70
Query: 64 IRGNNVLYIS 73
+RG V+YIS
Sbjct: 71 LRGTQVMYIS 80
>gi|326512700|dbj|BAK03257.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + G+ V+VKL G++Y+G L +D YMN+ L TEE+I+GQ GD IR NN
Sbjct: 10 PFLQNLTGKMVIVKLKWGMEYKGYLVSVDSYMNLQLSGTEEFIDGQCSGNLGDILIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYL 73
>gi|365982027|ref|XP_003667847.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
gi|343766613|emb|CCD22604.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
Length = 83
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTF 63
+QF+ I G+PV VKL SG+ Y G L +DG+MN+AL T E+ NG LK+ D F
Sbjct: 12 TQFLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSNTTEHYENSSNGLLKSYNSDVF 71
Query: 64 IRGNNVLYIS 73
+RG V+YIS
Sbjct: 72 LRGTQVMYIS 81
>gi|156844203|ref|XP_001645165.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
gi|189028754|sp|A7TK72.1|LSM6_VANPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|156115823|gb|EDO17307.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 83
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--NGQLKNKY-GDTFI 64
+QF+ I G+PV VKL SG+ Y+G L +DG+MN+AL T E+ N + +Y D F+
Sbjct: 13 TQFLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNAHMLKRYENDVFL 72
Query: 65 RGNNVLYIS 73
RG V+YIS
Sbjct: 73 RGTQVMYIS 81
>gi|221120213|ref|XP_002166685.1| PREDICTED: small nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 89
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV++KL G++Y+G L +DGYMN+ L +EE+I+G G+ IR NNV
Sbjct: 11 FLNGLTGKPVMIKLKWGMEYKGYLVSVDGYMNMQLANSEEFIDGTFTGNLGEILIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|403215083|emb|CCK69583.1| hypothetical protein KNAG_0C04820 [Kazachstania naganishii CBS
8797]
Length = 84
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTF 63
SQF+ I G+PV VKL SG+ Y G L +DG+MN+AL T E+ NG L D F
Sbjct: 13 SQFLGHIIGKPVHVKLHSGMLYSGTLESIDGFMNVALSSTTEHYENKENGLLHRYQSDVF 72
Query: 64 IRGNNVLYIS 73
+RG VLYIS
Sbjct: 73 LRGTQVLYIS 82
>gi|300116730|ref|NP_001177858.1| small nuclear ribonucleoprotein F [Nasonia vitripennis]
Length = 88
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L +DGYMN+ L EE+I+G L G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNVQLANAEEHIDGNLTGSLGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|307107458|gb|EFN55701.1| hypothetical protein CHLNCDRAFT_23084, partial [Chlorella
variabilis]
Length = 81
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L +D YMN+ L TEEYI+GQ G+ IR NNV
Sbjct: 9 FLNDLTGKQVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNV 68
Query: 70 LYI 72
LY+
Sbjct: 69 LYL 71
>gi|392580438|gb|EIW73565.1| hypothetical protein TREMEDRAFT_67422 [Tremella mesenterica DSM
1558]
Length = 86
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+ V VKL G++YRG L DGYMN+ L TEE NG+ G+ FIR NNV
Sbjct: 12 FLQELTGKIVDVKLKWGLEYRGYLVSTDGYMNLQLANTEEMENGKSNGTLGEVFIRCNNV 71
Query: 70 LYISTQK 76
LY+ K
Sbjct: 72 LYLGEAK 78
>gi|308481948|ref|XP_003103178.1| CRE-SNR-5 protein [Caenorhabditis remanei]
gi|308260283|gb|EFP04236.1| CRE-SNR-5 protein [Caenorhabditis remanei]
Length = 86
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PVV KL G++Y+G+L +D YMN+ L EEYI+G G+ IR NN
Sbjct: 11 PFLNSLTGKPVVCKLKWGMEYKGILVAVDSYMNLQLAHAEEYIDGNNTGNLGEILIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYV 74
>gi|237843565|ref|XP_002371080.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|211968744|gb|EEB03940.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|221504941|gb|EEE30606.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
VEG]
Length = 87
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + GR V+VKL G++Y+G L D YMN+ L+ TEE+++G K G+ +R NNV
Sbjct: 12 FLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGHLGEVLLRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|325190943|emb|CCA25428.1| small nuclear ribonucleoprotein F putative [Albugo laibachii Nc14]
Length = 134
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VVV+L G++Y+GVL +D YMN+ L +EEY+NG L G+ IR NNV
Sbjct: 50 FLTGLTGKTVVVRLKWGMEYKGVLVSVDSYMNLQLAGSEEYVNGDLAGNLGEVLIRCNNV 109
Query: 70 LYI 72
LY+
Sbjct: 110 LYL 112
>gi|168017152|ref|XP_001761112.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687798|gb|EDQ74179.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEE+++G G+ IR NN
Sbjct: 10 PFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNN 69
Query: 69 VLYI 72
V+Y+
Sbjct: 70 VMYL 73
>gi|255579817|ref|XP_002530746.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223529710|gb|EEF31652.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 88
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEE+I+GQ G+ IR NNV
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEFIDGQFTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|221056272|ref|XP_002259274.1| small nuclear ribonucleoprotein f [Plasmodium knowlesi strain H]
gi|193809345|emb|CAQ40047.1| small nuclear ribonucleoprotein f, putative [Plasmodium knowlesi
strain H]
Length = 86
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G V++KL G++Y+G L D YMNI L EE+I+G+ K G+ F+R NN+
Sbjct: 13 FLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLRCNNI 72
Query: 70 LYISTQKR 77
LYI K
Sbjct: 73 LYIREDKE 80
>gi|145350487|ref|XP_001419636.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579868|gb|ABO97929.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 79
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+ V VKL G++YRG L D YMN+ L TEEY++G+ + G
Sbjct: 1 MSAPINPKPFLASLTGKKVAVKLKWGMEYRGFLVSTDAYMNLQLASTEEYVDGERQGALG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNV+Y+
Sbjct: 61 EVLIRCNNVMYL 72
>gi|401403798|ref|XP_003881578.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
gi|325115991|emb|CBZ51545.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
Length = 87
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + GR V+VKL G++Y+G L D YMN+ L+ TEE+++G K G+ +R NNV
Sbjct: 12 FLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGNFKGHLGEVLLRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|168049785|ref|XP_001777342.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671318|gb|EDQ57872.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 85
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G++Y+G L +D YMN+ L TEE+++G G+ IR NN
Sbjct: 8 PFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNN 67
Query: 69 VLYI 72
V+Y+
Sbjct: 68 VMYL 71
>gi|156098737|ref|XP_001615384.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804258|gb|EDL45657.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 86
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G V++KL G++Y+G L D YMNI L EE+I+G+ K G+ F+R NN
Sbjct: 12 PFLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLRCNN 71
Query: 69 VLYISTQK 76
+LYI K
Sbjct: 72 ILYIREDK 79
>gi|403284568|ref|XP_003933637.1| PREDICTED: uncharacterized protein LOC101050458 [Saimiri
boliviensis boliviensis]
Length = 282
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PVVVKL GV+++G L +DGY N+ L TEEYI G L + IR NN+
Sbjct: 206 FLSGLTGKPVVVKLRWGVEFKGCLVSVDGYKNVQLANTEEYIGGALSGHLWEVLIRWNNI 265
Query: 70 LYISTQKRRGV 80
L+I RGV
Sbjct: 266 LHI-----RGV 271
>gi|209736642|gb|ACI69190.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303661867|gb|ADM16052.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYPVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVL+I
Sbjct: 61 EVLVRCNNVLFI 72
>gi|110760095|ref|XP_001120305.1| PREDICTED: small nuclear ribonucleoprotein F isoform 1 [Apis
mellifera]
gi|328782586|ref|XP_003250168.1| PREDICTED: small nuclear ribonucleoprotein F isoform 2 [Apis
mellifera]
gi|380015356|ref|XP_003691669.1| PREDICTED: small nuclear ribonucleoprotein F-like [Apis florea]
gi|383862941|ref|XP_003706941.1| PREDICTED: small nuclear ribonucleoprotein F-like [Megachile
rotundata]
Length = 88
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE+I+G G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|307186677|gb|EFN72155.1| Small nuclear ribonucleoprotein F [Camponotus floridanus]
Length = 84
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE+I+G G+ IR NNV
Sbjct: 8 FLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGSCTGNLGEVLIRCNNV 67
Query: 70 LYI 72
+YI
Sbjct: 68 MYI 70
>gi|410080163|ref|XP_003957662.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
gi|372464248|emb|CCF58527.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
Length = 124
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 1 MSRKESLS-QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQL 55
MS ++S QF+ I G+PV VKL SG+ Y G+L +DG+MN+AL Q E+ NG L
Sbjct: 45 MSETSTVSTQFLSDIIGKPVNVKLHSGMLYTGLLQSIDGFMNVALAQVTEHYESKENGLL 104
Query: 56 KNKYGDTFIRGNNVLYIS 73
D F+RG V+YIS
Sbjct: 105 TKYNSDVFLRGTQVMYIS 122
>gi|495021|gb|AAA28445.1| membrane-associated protein [Drosophila melanogaster]
Length = 101
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE I G + G+ IR NNV
Sbjct: 12 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|209733744|gb|ACI67741.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303668331|gb|ADM16295.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL ++Y+G L +D YMN+ L TEEY++G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWDMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVL+I
Sbjct: 61 EVLVRCNNVLFI 72
>gi|22024001|ref|NP_523708.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|125807333|ref|XP_001360364.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|194754150|ref|XP_001959360.1| GF12081 [Drosophila ananassae]
gi|194883764|ref|XP_001975970.1| GG22599 [Drosophila erecta]
gi|195056665|ref|XP_001995140.1| GH22983 [Drosophila grimshawi]
gi|195122320|ref|XP_002005660.1| GI18952 [Drosophila mojavensis]
gi|195149774|ref|XP_002015830.1| GL11267 [Drosophila persimilis]
gi|195333646|ref|XP_002033498.1| GM20378 [Drosophila sechellia]
gi|195381309|ref|XP_002049395.1| GJ21558 [Drosophila virilis]
gi|195436262|ref|XP_002066088.1| GK22120 [Drosophila willistoni]
gi|195485487|ref|XP_002091113.1| GE13467 [Drosophila yakuba]
gi|195551853|ref|XP_002076311.1| GD15243 [Drosophila simulans]
gi|195551862|ref|XP_002076315.1| DebB [Drosophila simulans]
gi|29337191|sp|Q24297.2|RUXF_DROME RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Membrane-associated protein Deb-B;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|21430088|gb|AAM50722.1| GM23968p [Drosophila melanogaster]
gi|21645477|gb|AAF58559.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|54635536|gb|EAL24939.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|190620658|gb|EDV36182.1| GF12081 [Drosophila ananassae]
gi|190659157|gb|EDV56370.1| GG22599 [Drosophila erecta]
gi|193899346|gb|EDV98212.1| GH22983 [Drosophila grimshawi]
gi|193910728|gb|EDW09595.1| GI18952 [Drosophila mojavensis]
gi|194109677|gb|EDW31720.1| GL11267 [Drosophila persimilis]
gi|194125468|gb|EDW47511.1| GM20378 [Drosophila sechellia]
gi|194144192|gb|EDW60588.1| GJ21558 [Drosophila virilis]
gi|194162173|gb|EDW77074.1| GK22120 [Drosophila willistoni]
gi|194177214|gb|EDW90825.1| GE13467 [Drosophila yakuba]
gi|194201960|gb|EDX15536.1| GD15243 [Drosophila simulans]
gi|194201964|gb|EDX15540.1| DebB [Drosophila simulans]
gi|220956990|gb|ACL91038.1| DebB-PA [synthetic construct]
Length = 88
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE I G + G+ IR NNV
Sbjct: 12 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|402586897|gb|EJW80834.1| small nuclear ribonucleoprotein F [Wuchereria bancrofti]
Length = 94
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PVV KL G++Y+G L +DGYMN+ L EEYI+G+ G+ IR NNV
Sbjct: 21 FLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGDVGEVLIRCNNV 80
Query: 70 LYI 72
L++
Sbjct: 81 LWV 83
>gi|340368862|ref|XP_003382969.1| PREDICTED: small nuclear ribonucleoprotein F-like [Amphimedon
queenslandica]
Length = 87
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+VKL G++Y+G L D YMN+ L TEEYI+G L G+ IR NN
Sbjct: 11 PFLSGLTGKSVIVKLKWGMEYKGYLVSTDSYMNVQLANTEEYIDGSLTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYV 74
>gi|307213128|gb|EFN88650.1| Small nuclear ribonucleoprotein F [Harpegnathos saltator]
Length = 88
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE+I G G+ IR NN
Sbjct: 11 PFLNGLTGKPVIVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGTCTGNVGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|302782820|ref|XP_002973183.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
gi|302789802|ref|XP_002976669.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300155707|gb|EFJ22338.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300158936|gb|EFJ25557.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
Length = 84
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ ++ G+ V+VKL G++Y+G L +D YMN+ L TEE+I+GQ G+ IR NNV
Sbjct: 11 FLNELTGKAVMVKLKWGMEYKGFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYL 73
>gi|428171321|gb|EKX40239.1| hypothetical protein GUITHDRAFT_43352, partial [Guillardia theta
CCMP2712]
Length = 70
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G VVVKL G++Y+GVL D YMNI LE T+E+I Q + G+ IR NNV
Sbjct: 7 FLADLTGLSVVVKLKWGMEYKGVLKSTDNYMNIQLENTQEFIEDQFQGDLGEVLIRCNNV 66
Query: 70 LYI 72
LY+
Sbjct: 67 LYV 69
>gi|312082117|ref|XP_003143311.1| hypothetical protein LOAG_07730 [Loa loa]
gi|307761525|gb|EFO20759.1| small nuclear ribonucleoprotein F [Loa loa]
Length = 85
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PVV KL G++Y+G L +DGYMN+ L EEYI+G+ G+ IR NNV
Sbjct: 12 FLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGDVGEVLIRCNNV 71
Query: 70 LYI 72
L++
Sbjct: 72 LWV 74
>gi|290561351|gb|ADD38076.1| Small nuclear ribonucleoprotein F [Lepeophtheirus salmonis]
Length = 86
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ + F+ ++ G+ V+VKL G +Y+G L DGYMN+ L TEEYI+G G
Sbjct: 1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans]
Length = 79
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE I G + G+ IR NNV
Sbjct: 8 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNV 67
Query: 70 LYI 72
LYI
Sbjct: 68 LYI 70
>gi|332031555|gb|EGI71027.1| Small nuclear ribonucleoprotein F [Acromyrmex echinatior]
Length = 88
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE+I G G+ IR NNV
Sbjct: 12 FLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGNLGEVLIRCNNV 71
Query: 70 LYI 72
+YI
Sbjct: 72 MYI 74
>gi|395833472|ref|XP_003789756.1| PREDICTED: LOW QUALITY PROTEIN: protein MB21D1 [Otolemur
garnettii]
Length = 718
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNK 58
G VVVK SGVDYRGVL+ DGY+N ALE+TEEY+NG++KNK
Sbjct: 2 GWSVVVKSNSGVDYRGVLARTDGYVNTALEETEEYVNGEVKNK 44
>gi|224003119|ref|XP_002291231.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973007|gb|EED91338.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 112
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V V+L G +Y+G L+ D YMN+ LE+TEE+I+GQ G+ IR NNV
Sbjct: 35 FLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEETEEFIDGQFAGTLGEVLIRCNNV 94
Query: 70 LYISTQKRRG 79
LY+ G
Sbjct: 95 LYVKAADFSG 104
>gi|340719936|ref|XP_003398400.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
terrestris]
gi|350410809|ref|XP_003489148.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
impatiens]
Length = 88
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE+I G G+ IR NN
Sbjct: 11 PFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGNLGEVLIRCNN 70
Query: 69 VLYI 72
V+YI
Sbjct: 71 VMYI 74
>gi|393246346|gb|EJD53855.1| mRNA processing-related protein [Auricularia delicata TFB-10046
SS5]
Length = 81
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V V+L G++YRG L D YMN+ L EEY +G+ G+ FIR NNV
Sbjct: 12 FLQDLTGKSVWVRLKWGLEYRGFLVSTDAYMNLQLANAEEYQDGKSNGTLGEIFIRCNNV 71
Query: 70 LYISTQK 76
LYI K
Sbjct: 72 LYIREDK 78
>gi|84999278|ref|XP_954360.1| small nuclear ribonucleoprotein f [Theileria annulata]
gi|65305358|emb|CAI73683.1| small nuclear ribonucleoprotein f, putative [Theileria annulata]
Length = 91
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG-DTFIRGNN 68
F+ + G+ VVVKL G++Y+G L D YMN+ L EE+ NG LK K G D IR NN
Sbjct: 19 FLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGKLGNDILIRCNN 78
Query: 69 VLYI 72
+LY+
Sbjct: 79 MLYV 82
>gi|403220738|dbj|BAM38871.1| small nuclear ribonucleoprotein f [Theileria orientalis strain
Shintoku]
Length = 84
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG-DTFIRGNN 68
F+ + G+ VVVKL G++Y+G L D YMN+ L+ EE+ NG LK K G D IR NN
Sbjct: 16 FLTSLAGKAVVVKLKWGMEYKGTLKSFDSYMNLQLQDPEEWENGVLKGKLGNDILIRCNN 75
Query: 69 VLYI 72
+LY+
Sbjct: 76 MLYV 79
>gi|66815943|ref|XP_641988.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74856500|sp|Q54XP2.1|RUXF_DICDI RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|60470031|gb|EAL68012.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 91
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 1 MSRKESLSQ--FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
MS+ E+L+ F+ + G+ + V+L G++YRG+L+ +D YMN+ L TEE+I+G K
Sbjct: 1 MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG 60
Query: 58 KYGDTFIRGNNVLYI 72
G+ IR NNVL++
Sbjct: 61 PLGEVLIRCNNVLFV 75
>gi|225709496|gb|ACO10594.1| Small nuclear ribonucleoprotein F [Caligus rogercresseyi]
Length = 86
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M+ + F+ ++ G+ V+VKL G +Y+G L DGYMN+ L TEEYI+G G
Sbjct: 1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSSDGYMNVQLANTEEYIDGNCTGTLG 60
Query: 61 DTFIRGNNVLYI 72
+ +R NNVLYI
Sbjct: 61 EVLVRCNNVLYI 72
>gi|71032523|ref|XP_765903.1| small nuclear ribonucleoprotein F [Theileria parva strain Muguga]
gi|68352860|gb|EAN33620.1| small nuclear ribonucleoprotein F, putative [Theileria parva]
Length = 91
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG-DTFIRGN 67
F+ + G+ VVVKL G++Y+G L D YMN+ L EE+ NG LK K G D IR N
Sbjct: 18 PFLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGKLGNDILIRCN 77
Query: 68 NVLYI 72
N+LY+
Sbjct: 78 NMLYV 82
>gi|167377724|ref|XP_001734515.1| small nuclear ribonucleoprotein F [Entamoeba dispar SAW760]
gi|165903946|gb|EDR29326.1| small nuclear ribonucleoprotein F, putative [Entamoeba dispar
SAW760]
Length = 83
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S +F+ + G+ V +KL G++Y+GVL D YMN L EE+ NG + K GD IR
Sbjct: 9 SCEKFLNDLIGKLVSIKLKWGMEYKGVLVSRDAYMNFLLTNAEEWTNGVIAGKVGDVLIR 68
Query: 66 GNNVLYI 72
NNVLY+
Sbjct: 69 CNNVLYV 75
>gi|402217602|gb|EJT97682.1| small nuclear ribo protein F [Dacryopinax sp. DJM-731 SS1]
Length = 89
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
FIQ + G+ V+V+L G +Y+G L DG+MN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 16 FIQDLTGKQVLVRLKWGFEYKGYLVSTDGFMNLQLANTEEFQDGKSNGALGEVFIRCNNV 75
Query: 70 LYI 72
LYI
Sbjct: 76 LYI 78
>gi|328870612|gb|EGG18985.1| adenosine deaminase acting on tRNA 1 [Dictyostelium fasciculatum]
Length = 639
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
S F+ ++ G+ V V+L G++YRG+L+ +D YMN+ L TEE+I+G + + G+ I
Sbjct: 563 SPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGTMIDTLGEVLI 622
Query: 65 RGNNVLYI 72
R NNVLYI
Sbjct: 623 RCNNVLYI 630
>gi|401885054|gb|EJT49185.1| mRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 129
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V VKL G++YRG L DGY N+ L EE NG+ + G+ FIR NNV
Sbjct: 12 FLQDLTGKTVTVKLKWGLEYRGFLVSTDGYFNLQLTGAEEMENGKSNGQLGEVFIRCNNV 71
Query: 70 LYISTQKRR 78
LYI R
Sbjct: 72 LYIRMAMPR 80
>gi|330791644|ref|XP_003283902.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
gi|325086173|gb|EGC39567.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
Length = 85
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 1 MSRKESLSQ--FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
M++ E+LS F+ + G+ + V+L G++YRG+LS +D YMN+ + TEE+I+G +
Sbjct: 1 MNKIEALSPKPFLYGLKGKKIAVRLKWGGMEYRGILSSVDSYMNLQMLATEEWIDGAVMG 60
Query: 58 KYGDTFIRGNNVLYI 72
+ G+ IR NNVLYI
Sbjct: 61 QLGEVLIRCNNVLYI 75
>gi|343427163|emb|CBQ70691.1| probable Small nuclear ribonucleoprotein F [Sporisorium reilianum
SRZ2]
Length = 82
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q G+PV+V+L G++Y+G L D YMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 FLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGMLGEVFIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|443897316|dbj|GAC74657.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 82
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q G+PV+V+L G++Y+G L D YMN+ L TEE+ +G+ G+ FIR NNV
Sbjct: 12 FLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGMLGEVFIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|58266046|ref|XP_570179.1| mRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110882|ref|XP_775905.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258571|gb|EAL21258.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226412|gb|AAW42872.1| mRNA processing-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 87
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V V+L G++YRG L DGYMN+ L TEE NG+ G+ IR NNV
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRCNNV 71
Query: 70 LYISTQKRRG 79
LYI K R
Sbjct: 72 LYIREFKDRA 81
>gi|320165888|gb|EFW42787.1| hypothetical protein CAOG_07919 [Capsaspora owczarzaki ATCC
30864]
Length = 85
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+P++VKL G +Y G L DGYMN+ L T E+++G+ ++ G+ IR NNV
Sbjct: 12 FLASLSGKPIIVKLKWGQEYHGTLLASDGYMNLQLGNTIEHVDGEETHRLGEVLIRCNNV 71
Query: 70 LYISTQKRRGV 80
LY+ + +
Sbjct: 72 LYVKAGEEQAA 82
>gi|67476154|ref|XP_653680.1| small nuclear ribonucleoprotein F [Entamoeba histolytica
HM-1:IMSS]
gi|56470655|gb|EAL48292.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407038538|gb|EKE39178.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 83
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S +F+ + G+ V +KL G++Y+G+L D YMN L EE+ NG + K GD IR
Sbjct: 9 SCEKFLNDLIGKLVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIR 68
Query: 66 GNNVLYI 72
NNVLY+
Sbjct: 69 CNNVLYV 75
>gi|91083615|ref|XP_969779.1| PREDICTED: similar to AGAP002658-PA [Tribolium castaneum]
gi|270007843|gb|EFA04291.1| hypothetical protein TcasGA2_TC014582 [Tribolium castaneum]
Length = 88
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+VKL G +Y+G L +DGYMN+ L TEE+I+G + G+ IR NN
Sbjct: 11 PFLNGLTGKAVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEFIDGNMTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLFI 74
>gi|366988705|ref|XP_003674120.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
gi|342299983|emb|CCC67739.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
Length = 83
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTF 63
+QF+ I G+PV VKL SG+ Y G L +DG+MN+AL E+ NG L+ D F
Sbjct: 12 TQFLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSSATEHYENASNGLLRTYNSDVF 71
Query: 64 IRGNNVLYIS 73
+RG V+YIS
Sbjct: 72 LRGTQVMYIS 81
>gi|397615466|gb|EJK63449.1| hypothetical protein THAOC_15885, partial [Thalassiosira oceanica]
Length = 184
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V V+L G +Y+G L+ D YMN+ LE TEE+I GQ G+ IR NNV
Sbjct: 109 FLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEDTEEFIEGQFAGTLGEVLIRCNNV 168
Query: 70 LYI 72
LY+
Sbjct: 169 LYV 171
>gi|449710107|gb|EMD49242.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica KU27]
Length = 83
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S +F+ + G+ V +KL G++Y+G+L D YMN L EE+ NG + K GD IR
Sbjct: 9 SCEKFLNDLIGKFVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIR 68
Query: 66 GNNVLYI 72
NNVLY+
Sbjct: 69 CNNVLYV 75
>gi|50308123|ref|XP_454062.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636738|sp|Q6CPS7.1|LSM6_KLULA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|49643197|emb|CAG99149.1| KLLA0E02575p [Kluyveromyces lactis]
Length = 80
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKN 57
S+ + F++ I G+PV VKL SG+ Y+G L +DG+MN+ + Q E+ NG L
Sbjct: 3 SKATASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHK 62
Query: 58 KYGDTFIRGNNVLYISTQ 75
+ F+RG+ VLYIS +
Sbjct: 63 YPSEVFLRGSQVLYISEK 80
>gi|389585081|dbj|GAB67812.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium cynomolgi
strain B]
Length = 77
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F++ + GR V+V+L +G D++G+L+CLD MN+ALEQTEE+ G+ Y D FIR
Sbjct: 5 SPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFIESYYDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>gi|268575376|ref|XP_002642667.1| C. briggsae CBR-SNR-5 protein [Caenorhabditis briggsae]
Length = 86
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+G+L +D YMN+ L EEYI+G G+ IR NNV
Sbjct: 12 FLNSLTGKNVVCKLKWGMEYKGILVAVDSYMNLQLANAEEYIDGNNTGNLGEILIRCNNV 71
Query: 70 LYISTQ 75
LY+ Q
Sbjct: 72 LYVGGQ 77
>gi|340502115|gb|EGR28832.1| lsm6 protein, putative [Ichthyophthirius multifiliis]
Length = 57
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
GR V VKL +G +Y GVL+ DG MN+ L+Q EE+ N +LKNKYG+ FIR
Sbjct: 2 GRLVSVKLHNGSEYVGVLATFDGLMNVVLQQAEEFENSELKNKYGEIFIR 51
>gi|17557029|ref|NP_498708.1| Protein SNR-5 [Caenorhabditis elegans]
gi|466158|sp|P34659.1|RUXF_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|351020571|emb|CCD62546.1| Protein SNR-5 [Caenorhabditis elegans]
Length = 85
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+GVL +D YMN+ L EEYI+G + G+ IR NNV
Sbjct: 12 FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYV 74
>gi|403372449|gb|EJY86123.1| hypothetical protein OXYTRI_15885 [Oxytricha trifallax]
Length = 89
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 14 IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYI 72
I G+ V+VKL G YRG CLDG +N LE+ EE +G++ +YGD FIRGNNV YI
Sbjct: 2 IKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCYI 61
Query: 73 S 73
+
Sbjct: 62 A 62
>gi|403377342|gb|EJY88664.1| hypothetical protein OXYTRI_00119 [Oxytricha trifallax]
Length = 89
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 14 IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYI 72
I G+ V+VKL G YRG CLDG +N LE+ EE +G++ +YGD FIRGNNV YI
Sbjct: 2 IKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCYI 61
Query: 73 S 73
+
Sbjct: 62 A 62
>gi|301781869|ref|XP_002926350.1| PREDICTED: hypothetical protein LOC100471390 [Ailuropoda
melanoleuca]
Length = 167
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+P+ V+ G++Y+G L +DGYMN+ L EEYI+G L + IR NN
Sbjct: 91 FLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLAEVLIRHNNA 150
Query: 70 LYI 72
LYI
Sbjct: 151 LYI 153
>gi|321257666|ref|XP_003193669.1| mRNA processing-related protein [Cryptococcus gattii WM276]
gi|317460139|gb|ADV21882.1| mRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 84
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V V+L G++YRG L DGYMN+ L TEE NG+ G+ IR NNV
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|357605279|gb|EHJ64538.1| small nuclear ribonucleoprotein F [Danaus plexippus]
Length = 88
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+VKL G +Y+G+L DGYMN+ L TEE ++G G+ IR NN
Sbjct: 11 PFLNSLTGKAVLVKLKWGHEYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYV 74
>gi|405120174|gb|AFR94945.1| small nuclear riboprotein F [Cryptococcus neoformans var. grubii
H99]
Length = 84
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+ V V+L G++YRG L DGYMN+ L TEE NG+ G+ IR NNV
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|255710425|ref|XP_002551496.1| KLTH0A00770p [Lachancea thermotolerans]
gi|238932873|emb|CAR21054.1| KLTH0A00770p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++++ +P+VV L + Y+G+L D Y N+ L + EE+I GQ K K GD FIR NN
Sbjct: 12 FLRELINKPIVVTLKFNKTQYKGLLVSTDNYFNLQLTEAEEFIEGQSKGKIGDIFIRCNN 71
Query: 69 VLYI 72
VL+I
Sbjct: 72 VLWI 75
>gi|395746943|ref|XP_003778537.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
F-like [Pongo abelii]
Length = 122
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + +PV+VKL G+DY+G L +DGYMN+ L TEEYI IR NN
Sbjct: 30 PFLKGLTEKPVMVKLKWGMDYKGXLVSVDGYMNMXLANTEEYIAXATMPSVDKVLIRYNN 89
Query: 69 VLYI 72
VLYI
Sbjct: 90 VLYI 93
>gi|281341398|gb|EFB16982.1| hypothetical protein PANDA_015984 [Ailuropoda melanoleuca]
Length = 86
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+P+ V+ G++Y+G L +DGYMN+ L EEYI+G L
Sbjct: 1 MSLLLNPKPFLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLA 60
Query: 61 DTFIRGNNVLYI 72
+ IR NN LYI
Sbjct: 61 EVLIRHNNALYI 72
>gi|153792507|ref|NP_001093276.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
gi|95102986|gb|ABF51434.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
Length = 88
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+VKL G +Y+G+L DGYMN+ L TEE ++G G+ IR NN
Sbjct: 11 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 70
Query: 69 VLYI 72
VLY+
Sbjct: 71 VLYV 74
>gi|341900660|gb|EGT56595.1| CBN-SNR-5 protein [Caenorhabditis brenneri]
Length = 86
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+GVL +D YMN+ L EEYI+G G+ IR NNV
Sbjct: 12 FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNNTGNLGEILIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYV 74
>gi|320589552|gb|EFX02013.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 119
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + G+PV V+L G +Y+G L +D YMN+ L TEE+I+G+ + G IR NN
Sbjct: 45 MLQDLVGKPVSVRLKWGETEYKGALVSIDSYMNLQLSDTEEFIDGESTGQLGQVLIRCNN 104
Query: 69 VLYISTQKR 77
VL+I +R
Sbjct: 105 VLWIRGDER 113
>gi|50543240|ref|XP_499786.1| YALI0A05423p [Yarrowia lipolytica]
gi|49645651|emb|CAG83711.1| YALI0A05423p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q++ G+ V+V L G +Y+G L +D YMN+ LE EY++ + K + GD FIR NN
Sbjct: 13 FLQELTGKSVIVHLKWGKTEYQGTLVSVDSYMNLQLEDAVEYVDQENKGELGDVFIRCNN 72
Query: 69 VLYI 72
VL+I
Sbjct: 73 VLWI 76
>gi|388851890|emb|CCF54484.1| probable Small nuclear ribonucleoprotein F [Ustilago hordei]
Length = 82
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q G+PV+V+L G++Y+G L D YMN+ L TEE G+ G+ FIR NNV
Sbjct: 12 FLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEELQEGKSNGMLGEVFIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYL 74
>gi|294876061|ref|XP_002767532.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239869192|gb|EER00250.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 100
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN----GQLKN 57
+ + + F++++ G V V+L G DY G L LDG+MN+A++ E+ + G
Sbjct: 6 ANRRTPGDFLREVRGCGVRVRLNDGTDYTGQLLALDGFMNLAMDDAIEFPDGVNSGSEGR 65
Query: 58 KYGDTFIRGNNVLYISTQKRR 78
+YG IRGNNVLYIS +R+
Sbjct: 66 RYGQAVIRGNNVLYISMLERK 86
>gi|254570317|ref|XP_002492268.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032066|emb|CAY69988.1| Hypothetical protein PAS_chr3_0060 [Komagataella pastoris GS115]
Length = 86
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S+F+ +I G VVVK+ G + G L +DG+MN+ALE T G+ YGD FIRG
Sbjct: 9 SEFLSRITGEKVVVKMRDGTECHGALQSIDGFMNVALENTVGKYKGETTKTYGDVFIRGT 68
Query: 68 NVLY 71
N Y
Sbjct: 69 NGKY 72
>gi|390601284|gb|EIN10678.1| small nuclear ribonucleo protein SmF, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 80
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q++ G+ V V+L G++Y+G L DGYMN+ L TEE +G G+ FIR NNV
Sbjct: 12 FMQELTGKLVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEIQDGVSNGTLGEVFIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|254585029|ref|XP_002498082.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
gi|238940976|emb|CAR29149.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
Length = 115
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLK 56
M++ +S SQF+ I G+ V VKL SG+ YRG L +DG+MN+AL +E+ NG L+
Sbjct: 37 MAKIDS-SQFLSTIIGQNVHVKLHSGMLYRGRLESIDGFMNVALSSAKEHYETGENGLLR 95
Query: 57 NKYGDTFIRGNNVLYISTQK 76
D F+RG V+YIS K
Sbjct: 96 TYPTDVFLRGTQVMYISEVK 115
>gi|444314597|ref|XP_004177956.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
gi|387510995|emb|CCH58437.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
Length = 78
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTF 63
+ F+ I GRPV VKL SG+ Y+G L +DG+MN+AL E+ NG L + F
Sbjct: 7 TDFLSSIIGRPVSVKLHSGMLYQGKLESIDGFMNVALSNATEHYENSNNGLLHKYPNEVF 66
Query: 64 IRGNNVLYIS 73
+RG VLYIS
Sbjct: 67 VRGTQVLYIS 76
>gi|399216718|emb|CCF73405.1| unnamed protein product [Babesia microti strain RI]
Length = 92
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V VKL G++YRG L D YMNI L+ EE+I+G K G IR NN
Sbjct: 25 PFLTSLLGKNVNVKLKWGMEYRGQLKSFDTYMNIQLDSAEEWIDGDFKGVLGLILIRCNN 84
Query: 69 VLYI 72
VLYI
Sbjct: 85 VLYI 88
>gi|365990688|ref|XP_003672173.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
gi|343770948|emb|CCD26930.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
Length = 102
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+++++ +P+VV L + Y+G L D Y NI L EE +NG+ K K GD FIR NN
Sbjct: 12 YLRELAQKPIVVTLKFNKTQYKGTLVSTDNYFNIQLSDAEEVVNGESKGKIGDIFIRCNN 71
Query: 69 VLYI 72
VLYI
Sbjct: 72 VLYI 75
>gi|119617955|gb|EAW97549.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_b
[Homo sapiens]
gi|344252281|gb|EGW08385.1| Small nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 67
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 20 VVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNVLYI
Sbjct: 1 MVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYI 53
>gi|388580904|gb|EIM21216.1| small nuclear ribonucleo protein SmF [Wallemia sebi CBS 633.66]
Length = 90
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V V+L G+DY+G L +D YMN+ L TEE+ N + G+ FIR NNV
Sbjct: 11 FLNDLTGKAVQVRLKWGLDYKGYLVSVDNYMNLQLANTEEFQNDKSNGALGEVFIRCNNV 70
Query: 70 LYI 72
L++
Sbjct: 71 LWL 73
>gi|358339525|dbj|GAA47572.1| small nuclear ribonucleoprotein F [Clonorchis sinensis]
Length = 83
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ I G+ V+VKL G++Y+G L +D YMN+ L T+EYI+ G+ IR NNV
Sbjct: 11 FLSSITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|384493309|gb|EIE83800.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 88
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV VKL G +Y+G L +D YMN+ L TEE+ NG G+ IR NNV
Sbjct: 11 FLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQNGVSVGTLGEVLIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|45185890|ref|NP_983606.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|74694815|sp|Q75BR7.1|LSM6_ASHGO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|44981680|gb|AAS51430.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|374106813|gb|AEY95722.1| FACR204Cp [Ashbya gossypii FDAG1]
Length = 85
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQ---LKNKY-GD 61
S S F+ I G+PV VKL SG+ Y+G L +DG+MN+AL EY + + ++Y D
Sbjct: 12 SSSTFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESD 71
Query: 62 TFIRGNNVLYIS 73
F+RG V+YIS
Sbjct: 72 VFLRGTQVMYIS 83
>gi|50288725|ref|XP_446792.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526100|emb|CAG59719.1| unnamed protein product [Candida glabrata]
Length = 86
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + +P+VV L + YRGVL D Y N+ L +EY+ G+LK G+ FIR NN
Sbjct: 12 FLKDLVDKPIVVTLKFNKTQYRGVLVSTDNYFNLQLRDAQEYVAGELKGTLGELFIRCNN 71
Query: 69 VLYI 72
VLYI
Sbjct: 72 VLYI 75
>gi|449706044|gb|EMD45970.1| U6 snRNP-associated protein Lsm6, putative [Entamoeba histolytica
KU27]
Length = 74
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
QF ++ +KL G ++G ++ +DG MNI LE EYING N+Y + FIRGNN
Sbjct: 11 QFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPECFIRGNN 70
Query: 69 VLY 71
LY
Sbjct: 71 SLY 73
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L Q ++ +PV+V L G + RG+L D +MN+ LE EE ING +KN+ G
Sbjct: 3 KRPLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGVIKNQ-GTLI 61
Query: 64 IRGNNVLYIST 74
+RG+NV+YIS
Sbjct: 62 VRGDNVIYISP 72
>gi|412991017|emb|CCO18389.1| predicted protein [Bathycoccus prasinos]
Length = 92
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 QFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
F+Q + G+ V+VKL SG+ Y+G L D YMN+ L T E I+G+ G+ IR N
Sbjct: 12 PFLQSLTGKKVLVKLKWSGMAYKGFLVSTDAYMNVQLANTMEIIDGEETGNLGEVLIRCN 71
Query: 68 NVLYIS 73
NVL+IS
Sbjct: 72 NVLWIS 77
>gi|256052184|ref|XP_002569656.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|353230903|emb|CCD77320.1| putative small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma
mansoni]
Length = 84
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ I G+ V+VKL G++Y+G L +D YMN+ L T+EYI+ G+ IR NNV
Sbjct: 11 FLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|60691036|gb|AAX30542.1| SJCHGC04779 protein [Schistosoma japonicum]
gi|226487226|emb|CAX75478.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487228|emb|CAX75479.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487230|emb|CAX75480.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487232|emb|CAX75481.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487234|emb|CAX75482.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
Length = 84
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ I G+ V+VKL G++Y+G L +D YMN+ L T+EYI+ G+ IR NNV
Sbjct: 11 FLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|363752525|ref|XP_003646479.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890114|gb|AET39662.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
Length = 85
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---NGQLKNK 58
+ S + F+ I G+PV VKL SG+ Y+G L +DG+MN++L EY + + +K
Sbjct: 8 TTATSSATFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVSLAGAMEYYEVESSSVIHK 67
Query: 59 Y-GDTFIRGNNVLYIS 73
Y D F+RG VLYIS
Sbjct: 68 YESDVFLRGTQVLYIS 83
>gi|442754581|gb|JAA69450.1| Putative small nuclear ribonucleoprotein snrnp smf [Ixodes
ricinus]
Length = 86
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY-GDTFIRGNN 68
F+ + G+ V+VKL G++Y+G+L D YMNI ++ EE+ G LK K G IR NN
Sbjct: 15 FLTMLTGQLVIVKLKWGMEYKGILKSFDSYMNIQIDGAEEWERGVLKGKLDGTILIRCNN 74
Query: 69 VLYISTQKRRGV 80
+LYI + G
Sbjct: 75 MLYIRGAEENGA 86
>gi|409050244|gb|EKM59721.1| hypothetical protein PHACADRAFT_205939 [Phanerochaete carnosa
HHB-10118-sp]
Length = 69
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+Q++ G+PV V+L G++Y+G L DGYMN+ L TEE+ +G+ G+ FIR
Sbjct: 12 FMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIR 67
>gi|238231689|ref|NP_001154030.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
gi|225703496|gb|ACO07594.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
Length = 65
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +D YMN+ L +EEY++G L + G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANSEEYVDGALADHLG 60
Query: 61 DTFIR 65
+ +R
Sbjct: 61 EVLVR 65
>gi|148688807|gb|EDL20754.1| mCG1048415 [Mus musculus]
Length = 83
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLY 71
+ G+PV+VKL G++Y L +DGYMN+ L TEEYI+G+L G+ R NNVLY
Sbjct: 14 LTGKPVMVKLKWGMEY---LVSMDGYMNMQLANTEEYIDGELSEHLGEVLKRCNNVLY 68
>gi|326431600|gb|EGD77170.1| snRNP Sm protein F [Salpingoeca sp. ATCC 50818]
Length = 70
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
Q +Q++ G+ V VKL G++YRGVL D YMN L TEEYI+G + G+ IR +
Sbjct: 10 QLLQELTGKSVAVKLKWGMEYRGVLKSFDNYMNFQLLNTEEYIDGVSQGNLGECLIRAH 68
>gi|145517276|ref|XP_001444521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145518840|ref|XP_001445292.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411943|emb|CAK77124.1| unnamed protein product [Paramecium tetraurelia]
gi|124412736|emb|CAK77895.1| unnamed protein product [Paramecium tetraurelia]
Length = 81
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+++I + ++V+L G + RGVL D YMN+ + TEEY++G+ + G+ +R NNV
Sbjct: 12 FLEEITRKQIIVRLKWGWELRGVLKSSDQYMNLHMLNTEEYVDGKSRGILGEVLVRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>gi|19112893|ref|NP_596101.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe 972h-]
gi|6094210|sp|O59734.1|RUXF_SCHPO RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|3130040|emb|CAA19017.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe]
Length = 78
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+PV+V+L G +Y+G L +D YMN+ L EE ++G G+ IR NNV
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
Query: 70 LYI 72
L++
Sbjct: 71 LWV 73
>gi|225680065|gb|EEH18349.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 136
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + ++V+L G +Y+G L +D YMNI L TEE+I+G+ G IR NN
Sbjct: 58 FLQSLINEDIIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIRCNN 117
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 118 VLWISAAK 125
>gi|328850359|gb|EGF99525.1| hypothetical protein MELLADRAFT_57836 [Melampsora larici-populina
98AG31]
Length = 58
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 20 VVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+V+L G++Y+G L +D YMN+ L TEEY NGQ G+ FIR NNVLYI
Sbjct: 1 MVRLKWGMEYKGYLVSMDSYMNLQLANTEEYQNGQSVGSLGEVFIRCNNVLYI 53
>gi|384496589|gb|EIE87080.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 85
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV VKL G +Y+G L +D YMN+ L TEE+ +G G+ IR NNV
Sbjct: 11 FLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQDGVSVGTLGEVLIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|213406521|ref|XP_002174032.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
gi|212002079|gb|EEB07739.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
Length = 66
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+Q + G+PV+++L G +Y+G L +D YMN+ L EE+I+G+ + G+ FIR
Sbjct: 11 FLQGLTGKPVLIRLKWGQEYKGTLQSIDSYMNLQLMDAEEWIDGESTGQLGEIFIR 66
>gi|156086192|ref|XP_001610505.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797758|gb|EDO06937.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 94
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT-FIRGNN 68
F+ ++ G+ V V L G++Y+G L D YMNI LE EE+ NG +K G T IR NN
Sbjct: 27 FLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGVMKGTLGGTILIRCNN 86
Query: 69 VLYI 72
VL+I
Sbjct: 87 VLHI 90
>gi|210075302|ref|XP_500899.2| YALI0B14773p [Yarrowia lipolytica]
gi|199425179|emb|CAG83150.2| YALI0B14773p [Yarrowia lipolytica CLIB122]
Length = 527
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY-GDTFIRG 66
S F+ +I G+ V V++ +G + GVL +DGYM+I LE EE ++ ++ Y D FIRG
Sbjct: 12 SSFLGEISGKKVNVRVSTGTTFSGVLQSVDGYMSIVLENAEELVDDKVVGIYDDDVFIRG 71
Query: 67 NN 68
NN
Sbjct: 72 NN 73
>gi|429328455|gb|AFZ80215.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 80
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY-GDTFIR 65
F+ + G+ V+VKL G++YRG+L D YMN+ L+ EE+ NG LK K G+ IR
Sbjct: 19 FLTNLAGKTVIVKLKWGMEYRGILKSFDSYMNLQLDSAEEWQNGTLKGKLGGEVLIR 75
>gi|407044953|gb|EKE42919.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 74
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
QF ++ +KL G ++G ++ +DG MNI LE EYING N+Y + FIRGNN
Sbjct: 11 QFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPECFIRGNN 70
Query: 69 VL 70
L
Sbjct: 71 SL 72
>gi|401839675|gb|EJT42789.1| LSM6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 86
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN---GQLKNKY-GDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ +L N++ D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNKSKLLNRFNNDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS K
Sbjct: 73 LRGTQVMYISELK 85
>gi|342878436|gb|EGU79779.1| hypothetical protein FOXB_09741 [Fusarium oxysporum Fo5176]
Length = 89
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
++++ G PV+V+L G V+Y+G L +D YMNI L TEEYI + G IR NN
Sbjct: 11 MLEKLVGNPVLVRLKWGEVEYKGTLVSIDSYMNIQLSGTEEYIEDKPTGSLGQVLIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|82795247|ref|NP_010666.2| Lsm6p [Saccharomyces cerevisiae S288c]
gi|189028755|sp|A6ZYX7.1|LSM6_YEAS7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|189047098|sp|Q06406.2|LSM6_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|151942351|gb|EDN60707.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190404686|gb|EDV07953.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|285811396|tpg|DAA12220.1| TPA: Lsm6p [Saccharomyces cerevisiae S288c]
Length = 86
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 73 LRGTQVMYISEQK 85
>gi|300122521|emb|CBK23091.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 14 IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+ G+ + VKL G++Y+G L D YMN+ L EEY++G+ GD IR NNVLYI
Sbjct: 1 MTGKLICVKLKWGLEYQGRLVSFDSYMNLQLSNCEEYVDGKSTALLGDVLIRCNNVLYI 59
>gi|358386686|gb|EHK24281.1| hypothetical protein TRIVIDRAFT_30418 [Trichoderma virens Gv29-8]
gi|358399880|gb|EHK49217.1| hypothetical protein TRIATDRAFT_143930 [Trichoderma atroviride
IMI 206040]
Length = 90
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + V+V+L G +Y+G L +D YMN+ L TEEY+N +L + G IR NN
Sbjct: 11 MLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLSNTEEYLNDKLTGELGQVLIRCNN 70
Query: 69 VLYI--STQKRRG 79
VLYI + QK G
Sbjct: 71 VLYIRGADQKESG 83
>gi|367005059|ref|XP_003687262.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
gi|357525565|emb|CCE64828.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + G+ +VVKL + +Y G L LD Y N+ L+ EE I+G K GD FIR NN
Sbjct: 17 FLRDLIGKKIVVKLKFNKTEYIGTLKSLDNYFNLQLDAAEEVIDGVSKGTIGDIFIRCNN 76
Query: 69 VLYI 72
VLY+
Sbjct: 77 VLYV 80
>gi|323334029|gb|EGA75414.1| Lsm6p [Saccharomyces cerevisiae AWRI796]
Length = 131
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 50 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 109
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 110 LRGTQVMYISEQK 122
>gi|849199|gb|AAB64814.1| Ydr378cp [Saccharomyces cerevisiae]
gi|259145616|emb|CAY78880.1| Lsm6p [Saccharomyces cerevisiae EC1118]
gi|323338113|gb|EGA79347.1| Lsm6p [Saccharomyces cerevisiae Vin13]
gi|323349129|gb|EGA83360.1| Lsm6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365766176|gb|EHN07675.1| Lsm6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300496|gb|EIW11587.1| Lsm6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 123
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 50 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 109
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 110 LRGTQVMYISEQK 122
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L + ++ +PV+V L G + RGVL D +MN+ LE EE ING + K G
Sbjct: 3 KRPLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEING-VTTKAGTLI 61
Query: 64 IRGNNVLYIS 73
+RG+NV+YIS
Sbjct: 62 VRGDNVIYIS 71
>gi|256273052|gb|EEU08010.1| Lsm6p [Saccharomyces cerevisiae JAY291]
gi|349577428|dbj|GAA22597.1| K7_Lsm6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 86
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNNDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 73 LRGTQVMYISEQK 85
>gi|315045822|ref|XP_003172286.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
gi|311342672|gb|EFR01875.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
Length = 90
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + +VV+L G +Y+G L +D YMNI L QTEE+I+G+ G+ IR NN
Sbjct: 11 MLQSLINEDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGKNTGTLGEVLIRCNN 70
Query: 69 VLYISTQK 76
VL+I K
Sbjct: 71 VLWIGNAK 78
>gi|116204791|ref|XP_001228206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176407|gb|EAQ83875.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 90
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + + VVV+L G +Y+G L +D YMNI L TEE+I+ + G IR NN
Sbjct: 11 FLQDLVNKDVVVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQVLIRCNN 70
Query: 69 VLYIST 74
VLY++
Sbjct: 71 VLYVTA 76
>gi|154311929|ref|XP_001555293.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347839851|emb|CCD54423.1| similar to small nuclear ribonucleoprotein protein F [Botryotinia
fuckeliana]
Length = 91
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 10 FIQQIHGRPVVVKLVSG--VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
F+Q + V+++L G +Y+G L +D YMNI L EE+I+ ++ + G IR N
Sbjct: 11 FLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTSTLGQVLIRCN 70
Query: 68 NVLYISTQK 76
NVLYIS +
Sbjct: 71 NVLYISAAQ 79
>gi|261193311|ref|XP_002623061.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|239588666|gb|EEQ71309.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|327358008|gb|EGE86865.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ATCC 18188]
Length = 90
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + ++V+L G +Y+G L +D YMNI L TEE+I+G+ G IR NN
Sbjct: 11 MLQSLVNEDIIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIRCNN 70
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 71 VLWISAAK 78
>gi|328772224|gb|EGF82263.1| hypothetical protein BATDEDRAFT_10083, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 65
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+ ++ G+P++VKL G++Y+G L +D YMN+ L TEEYI+G + G+ +R
Sbjct: 8 FLNELTGKPIMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYIDGVSQGVLGEVLVR 63
>gi|327304717|ref|XP_003237050.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326460048|gb|EGD85501.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326477298|gb|EGE01308.1| LSM domain-containing protein [Trichophyton equinum CBS 127.97]
Length = 90
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + +VV+L G +Y+G L +D YMNI L QTEE+I+G+ G+ IR NN
Sbjct: 11 MLQSLINEDIVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDGKNTGTLGEVLIRCNN 70
Query: 69 VLYISTQK 76
VL+I K
Sbjct: 71 VLWIGNAK 78
>gi|323305462|gb|EGA59206.1| Lsm6p [Saccharomyces cerevisiae FostersB]
gi|323355542|gb|EGA87363.1| Lsm6p [Saccharomyces cerevisiae VL3]
Length = 123
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 50 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNNDVF 109
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 110 LRGTQVMYISEQK 122
>gi|119191758|ref|XP_001246485.1| hypothetical protein CIMG_00256 [Coccidioides immitis RS]
gi|320036371|gb|EFW18310.1| sm snRNP core protein Smf1 [Coccidioides posadasii str. Silveira]
gi|392864283|gb|EAS34890.2| small nuclear ribonucleoprotein SmF [Coccidioides immitis RS]
Length = 89
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + V+V+L G +Y+G L +D YMNI L TEE+I+G+ G IR NN
Sbjct: 11 MLQSLVNEDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQVLIRCNN 70
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 71 VLWISAAK 78
>gi|367035568|ref|XP_003667066.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
gi|347014339|gb|AEO61821.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
Length = 91
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + + V+V+L G +Y+G L +D YMNI L TEE+I+ + G IR NN
Sbjct: 11 FLQDLVNKDVIVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQVLIRCNN 70
Query: 69 VLYISTQKRRG 79
VLY+ G
Sbjct: 71 VLYVKAADNAG 81
>gi|209881570|ref|XP_002142223.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557829|gb|EEA07874.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 92
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 9 QFIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
F+ + + V+V+L G ++Y+G L D YMN L EE+I+G +K G FIR N
Sbjct: 11 PFLTGLIEKTVIVRLKWGNIEYKGTLESYDDYMNFLLRDCEEWIDGTVKGALGTVFIRCN 70
Query: 68 NVLYI 72
N+LYI
Sbjct: 71 NILYI 75
>gi|212530490|ref|XP_002145402.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
gi|210074800|gb|EEA28887.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
Length = 88
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G ++++L G +YRG L +D YMN+ L TEEYI+G+ G IR NN
Sbjct: 11 FLQARVGTELIIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++++
Sbjct: 71 ILWMAS 76
>gi|367017208|ref|XP_003683102.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
gi|359750766|emb|CCE93891.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
Length = 83
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++++ +PVVV L + YRG L D Y N+ L EE+++G+ + G+ F+R NN
Sbjct: 11 FLRELVDQPVVVTLKFNSTQYRGTLVSTDNYFNVRLRDAEEFVDGRSRGTVGEIFVRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLWI 74
>gi|408404417|ref|YP_006862400.1| snRNP Sm-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365013|gb|AFU58743.1| putative snRNP Sm-like protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 145
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K LS +Q+ R V V+L S ++Y+G ++ +D YMN+ L EE+ + YG
Sbjct: 72 KRPLST-LQRAINRKVAVRLKSEIEYKGRMNNVDSYMNLILTDAEEFNGSDVLANYGKVV 130
Query: 64 IRGNNVLYISTQK 76
IRGNNVL+I +K
Sbjct: 131 IRGNNVLFIKLEK 143
>gi|440296706|gb|ELP89492.1| small nuclear ribonucleoprotein f, putative [Entamoeba invadens
IP1]
Length = 76
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + QF Q VKL G + G LS +DG MNI LE EE + G N Y
Sbjct: 1 MSSEVQSVQFFTQALQHECTVKLNDGSKFIGKLSLIDGSMNIVLENAEETVKGVKVNSYP 60
Query: 61 DTFIRGNN-VLYIS 73
FIRGNN V YIS
Sbjct: 61 QCFIRGNNKVCYIS 74
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L Q ++ +PV+V L G + RGVL D +MN+ L++ EE NGQ++ K G
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEEVENGQVQ-KVGTLI 61
Query: 64 IRGNNVLYIST 74
+RG+NV+YIS
Sbjct: 62 VRGDNVIYISP 72
>gi|303313371|ref|XP_003066697.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106359|gb|EER24552.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 91
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 14 IHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+ + V+V+L G +Y+G L +D YMNI L TEE+I+G+ G IR NNVL+I
Sbjct: 17 LESQDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQVLIRCNNVLWI 76
Query: 73 STQK 76
S K
Sbjct: 77 SAAK 80
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV+V+L G ++RG+L+ D +MNI LE EE NG++ K G IRG+ V+++S +
Sbjct: 16 PVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQNGEVVRKLGSVVIRGDTVVFVSPSE 74
>gi|440633409|gb|ELR03328.1| small nuclear ribonucleoprotein F [Geomyces destructans 20631-21]
Length = 91
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + VVV+L G +Y+G+L +D YMNI L TEE+I+ +L G IR NN
Sbjct: 11 MLQSLVNEEVVVRLKWGQTEYKGILVSIDSYMNIQLTNTEEFIDQKLTAALGQVLIRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLWI 74
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS K
Sbjct: 25 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK 83
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS K
Sbjct: 25 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK 83
>gi|399949557|gb|AFP65215.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949710|gb|AFP65368.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949722|gb|AFP65379.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949883|gb|AFP65540.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949895|gb|AFP65551.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399950053|gb|AFP65709.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
Length = 99
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F++ + ++VKL G++YRG+L D YMNI ++ EE+I + + IR NN+
Sbjct: 15 FLKTRQDKMILVKLKWGMEYRGILQSFDAYMNIRMKNAEEWIYNEKAGFLEEVLIRCNNI 74
Query: 70 LYISTQ 75
LYI+
Sbjct: 75 LYIANH 80
>gi|340522693|gb|EGR52926.1| predicted protein [Trichoderma reesei QM6a]
Length = 90
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + V+V+L G +Y+G L +D YMN+ L TEEY+N +L + G IR NN
Sbjct: 11 MLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLANTEEYLNEKLTGELGQVLIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS K
Sbjct: 25 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK 83
>gi|154286416|ref|XP_001544003.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407644|gb|EDN03185.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 80
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + V+V+L G +Y+G L +D YMNI L TEE+I G+ G IR NN
Sbjct: 1 MLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSLGQVLIRCNN 60
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 61 VLWISAAK 68
>gi|225558565|gb|EEH06849.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240275004|gb|EER38519.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325094349|gb|EGC47659.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 90
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + V+V+L G +Y+G L +D YMNI L TEE+I G+ G IR NN
Sbjct: 11 MLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSLGQVLIRCNN 70
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 71 VLWISAAK 78
>gi|164655489|ref|XP_001728874.1| hypothetical protein MGL_4041 [Malassezia globosa CBS 7966]
gi|159102760|gb|EDP41660.1| hypothetical protein MGL_4041 [Malassezia globosa CBS 7966]
Length = 38
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 40 MNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
MNIA+E T E+++G LK YGD FIRGNNVLYI+
Sbjct: 1 MNIAMEDTTEHVDGVLKTTYGDAFIRGNNVLYIT 34
>gi|254580984|ref|XP_002496477.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
gi|238939369|emb|CAR27544.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
Length = 99
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ ++ +P+VV L + Y+G L D Y N+ L + EE ++G+ K K G+ FIR NN
Sbjct: 12 FLGELVNKPIVVTLKFNKTQYKGTLISTDNYFNLQLSEAEEVVDGKNKGKVGNIFIRCNN 71
Query: 69 VLYI 72
VL+I
Sbjct: 72 VLWI 75
>gi|239614009|gb|EEQ90996.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ER-3]
Length = 90
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + ++V L G +Y+G L +D YMNI L TEE+I+G+ G IR NN
Sbjct: 11 MLQSLVNEDIIVHLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIRCNN 70
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 71 VLWISAAK 78
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+++L ++RG+L D +MN+ L EE NG++ K G IRG+N++YIS
Sbjct: 24 PVLIRLKGEREFRGILKSFDLHMNLVLNDAEEIENGEVTRKLGTVLIRGDNIVYISP 80
>gi|322699689|gb|EFY91449.1| small nuclear ribonucleoprotein SmF [Metarhizium acridum CQMa
102]
Length = 87
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q++ +PV V+L G V+Y+G L +D YMN+ L TEEY++ + G IR NN
Sbjct: 11 MLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLSGTEEYVSDKPTGLLGQVLIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS
Sbjct: 22 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 78
>gi|410075770|ref|XP_003955467.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
gi|372462050|emb|CCF56332.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
Length = 81
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + + +VV L + YRG L D Y NI L + EE+++ + K GD FIR NN
Sbjct: 12 FLRDLVNKKIVVTLKFNNTKYRGTLVSTDNYFNIQLSEAEEFVSNKSKGTIGDIFIRCNN 71
Query: 69 VLYI 72
VLYI
Sbjct: 72 VLYI 75
>gi|326473004|gb|EGD97013.1| LSM domain-containing protein [Trichophyton tonsurans CBS 112818]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 19 VVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+VV+L G +Y+G L +D YMNI L QTEE+I+G+ G+ IR NNVL+I K
Sbjct: 37 IVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDGKNTGTLGEVLIRCNNVLWIGNAK 95
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS
Sbjct: 25 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 81
>gi|322710221|gb|EFZ01796.1| small nuclear ribonucleoprotein SmF [Metarhizium anisopliae ARSEF
23]
Length = 87
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q++ +PV V+L G V+Y+G L +D YMN+ L TEEY++ + G IR NN
Sbjct: 11 MLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLAGTEEYVSDKPTGLLGQVLIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS
Sbjct: 27 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83
>gi|444316380|ref|XP_004178847.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
gi|387511887|emb|CCH59328.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
Length = 104
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+++ + P++V L + Y+G+L D Y NI L TEE ++G+ + GD FIR NN
Sbjct: 22 YLRSLIDTPIIVTLKFNKTQYKGILVSTDNYFNIQLRNTEEIVDGKTTGQLGDIFIRCNN 81
Query: 69 VLYI 72
VL+I
Sbjct: 82 VLWI 85
>gi|226291857|gb|EEH47285.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 19 VVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
++V+L G +Y+G L +D YMNI L TEE+I+G+ G IR NNVL+IS K
Sbjct: 24 IIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIRCNNVLWISAAK 82
>gi|378730981|gb|EHY57440.1| small nuclear ribonucleoprotein F [Exophiala dermatitidis
NIH/UT8656]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+QQ+ V+++L G +Y+G L +D YMNI L TEEYI+ + G IR NN
Sbjct: 11 LLQQLINDDVIIRLKWGQTEYKGRLISVDSYMNIQLSNTEEYIDRKHTGTLGQVLIRCNN 70
Query: 69 VLYISTQK 76
VL+IS K
Sbjct: 71 VLWISAAK 78
>gi|407926562|gb|EKG19529.1| hypothetical protein MPH_03393 [Macrophomina phaseolina MS6]
Length = 93
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 7 LSQFIQQIHGRPVVVKLVSG----------VDYRGVLSCLDGYMNIALEQTEEYINGQLK 56
+S F+ ++ RP+++ LV +Y G L D YMN+ L TEE+ING+ +
Sbjct: 1 MSAFMP-VNPRPMLLALVGKEIRVRLKWGYTEYTGALVSADSYMNLQLTNTEEFINGESQ 59
Query: 57 NKYGDTFIRGNNVLYISTQ 75
G IR NNVL+IS +
Sbjct: 60 GTLGQVLIRCNNVLWISAK 78
>gi|145328286|ref|NP_001077889.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|62318628|dbj|BAD95080.1| hypothetical protein [Arabidopsis thaliana]
gi|330251203|gb|AEC06297.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 61
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
++Y+G L+ +D YMN+ L TEEYI+GQL G+ IR NNVLY+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46
>gi|340343951|ref|ZP_08667083.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519092|gb|EGP92815.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 81
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+Q+ + V V+L + V+Y+G + +D YMN+ + EE+ +G++ YG +RGNNVL
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEFHDGKVIANYGRVIVRGNNVL 73
Query: 71 YISTQ 75
+I +
Sbjct: 74 FIKLE 78
>gi|68068315|ref|XP_676067.1| small nuclear ribonucleoprotein F [Plasmodium berghei strain
ANKA]
gi|70931673|ref|XP_737485.1| small nuclear ribonucleoprotein F [Plasmodium chabaudi chabaudi]
gi|56495585|emb|CAI00140.1| small nuclear ribonucleoprotein F, putative [Plasmodium berghei]
gi|56512916|emb|CAH79490.1| small nuclear ribonucleoprotein F, putative [Plasmodium chabaudi
chabaudi]
Length = 64
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+ + G V++KL G++Y+G L D YMNI L EE+I G+ K G+ F+R
Sbjct: 8 PFLNSLVGNRVIIKLKWGMEYKGNLKSFDAYMNIRLTSAEEWIRGEYKGTLGEIFLR 64
>gi|341038876|gb|EGS23868.1| small nuclear ribonucleoprotein F-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 94
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + + V+V+L G +Y+G L +D YMNI L TEE+IN + G IR NN
Sbjct: 13 FLQDLVNQDVIVRLKWGQTEYKGRLVSIDSYMNIQLANTEEFINYKSTGHLGQVLIRCNN 72
Query: 69 VLYIS 73
VL+++
Sbjct: 73 VLWVT 77
>gi|254569300|ref|XP_002491760.1| Core Sm protein Sm F [Komagataella pastoris GS115]
gi|238031557|emb|CAY69480.1| Core Sm protein Sm F [Komagataella pastoris GS115]
Length = 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 9 QFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALE-QTEEY--INGQLKNKYGDTFI 64
F++ + R V+VKL S V+Y G L +D YMN++L+ T+E+ I +L D FI
Sbjct: 10 PFLKSLINRSVIVKLKSSNVEYHGFLLSVDNYMNLSLDSSTKEFDPITEELTPLGSDLFI 69
Query: 65 RGNNVLYISTQKRR 78
R NNVL+IST +
Sbjct: 70 RCNNVLWISTTEEH 83
>gi|294936349|ref|XP_002781728.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239892650|gb|EER13523.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+V+L G ++ +G L +D +MN+ L+ EE+ G K GD IR NN
Sbjct: 11 FLNDLTGQEVLVRLKWGTLELKGRLQSVDTFMNLRLDHCEEWQAGNFKGALGDVLIRCNN 70
Query: 69 VLYISTQKRRGV 80
VLY+ G
Sbjct: 71 VLYVRAASSSGA 82
>gi|156846667|ref|XP_001646220.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116894|gb|EDO18362.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 84
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++++ +PVVV L + Y+G L D Y N+ L EE I+ K K GD FIR NN
Sbjct: 12 FLKELVNKPVVVTLKFNKTQYKGQLVSTDNYFNLQLTDAEEVIDNVSKGKVGDIFIRCNN 71
Query: 69 VLYI 72
VL++
Sbjct: 72 VLWV 75
>gi|259483935|tpe|CBF79732.1| TPA: small nuclear ribonucleoprotein SmF, putative
(AFU_orthologue; AFUA_2G15500) [Aspergillus nidulans
FGSC A4]
Length = 88
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G V+V+L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIRCNN 70
Query: 69 VLYISTQK 76
+L++ + +
Sbjct: 71 ILWMGSAE 78
>gi|366989381|ref|XP_003674458.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
gi|342300321|emb|CCC68080.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
Length = 74
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 17 RPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+PVVV L + Y+G L D Y N+ L EE + G+ K K GD FIR NNVL+I
Sbjct: 2 KPVVVTLKFNRTQYKGTLVSTDNYFNVQLSNAEEIVAGEHKGKVGDIFIRCNNVLWI 58
>gi|294874707|ref|XP_002767059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239868487|gb|EEQ99776.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + G+ V+V+L + ++ +G L +D +MN+ L+ EE+ +G K GD IR NN
Sbjct: 11 FLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGALGDVLIRCNN 70
Query: 69 VLYISTQKRRGV 80
VLY+ G
Sbjct: 71 VLYVRAASSSGA 82
>gi|193657221|ref|XP_001948152.1| PREDICTED: small nuclear ribonucleoprotein F-like [Acyrthosiphon
pisum]
Length = 89
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
++ + G+ ++VKL G +Y+G L D YMNI L E++ G G+ IR NNV
Sbjct: 11 YLNGLMGKTIIVKLKWGHEYKGFLVSTDNYMNIQLASATEFVEGSEPALLGEIMIRCNNV 70
Query: 70 LYI 72
LYI
Sbjct: 71 LYI 73
>gi|389583811|dbj|GAB66545.1| small nuclear ribonucleoprotein F [Plasmodium cynomolgi strain B]
Length = 57
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
++Y+G L D YMNI L EE+I+G+ K G+ F+R NN+LYI K
Sbjct: 1 MEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLRCNNILYIREDK 50
>gi|296414624|ref|XP_002836998.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632846|emb|CAZ81189.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + V V+L G +Y+G L D YMNI L TEE+++G+ G IR NN
Sbjct: 1 MLQSLVNQSVTVRLKWGQTEYKGTLVSADSYMNIQLSGTEEFVDGKSTGSLGQVLIRCNN 60
Query: 69 VLYIS 73
VL+IS
Sbjct: 61 VLWIS 65
>gi|302907735|ref|XP_003049712.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730648|gb|EEU43999.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 89
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + R V+V+L G V+Y+G L +D YMN+ L TEEYI + G IR NN
Sbjct: 11 MLQDLVSRTVLVRLKWGEVEYKGTLVSVDSYMNLQLSGTEEYIADKPTGSLGQVLIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|255953221|ref|XP_002567363.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589074|emb|CAP95196.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 88
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G V+++L G +Y+G L +D YMN+ L T+E+I+G+ G IR NN
Sbjct: 11 FLQARVGTEVLIRLKWGQTEYKGTLESIDSYMNVLLRDTQEFIDGKPTGALGLVLIRCNN 70
Query: 69 VLYIST 74
+LY+ +
Sbjct: 71 ILYLGS 76
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RG+L D +MN+ L+ EE G++ + G IRG+N++YIS
Sbjct: 21 PVLIKLKGEREFRGILKSFDLHMNLVLDDAEELEKGEVLRRLGTVLIRGDNIVYISP 77
>gi|395646750|ref|ZP_10434610.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395443490|gb|EJG08247.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 88
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L Q ++G+PV++ L G + RGVL D ++N+ L++ EE ++G + K G
Sbjct: 16 KRPLEILDQVLNGQPVIISLKGGHEIRGVLQGYDVHLNLVLDRAEEEVDGAVV-KRGTLI 74
Query: 64 IRGNNVLYIST 74
+RG+NV+YIS
Sbjct: 75 VRGDNVIYISP 85
>gi|358373866|dbj|GAA90462.1| DUF866 domain protein [Aspergillus kawachii IFO 4308]
Length = 242
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G V+++L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 165 FLQARVGTEVIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNN 224
Query: 69 VLYIST 74
+L++ +
Sbjct: 225 ILWMGS 230
>gi|410952460|ref|XP_003982898.1| PREDICTED: small nuclear ribonucleoprotein F-like [Felis catus]
Length = 82
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS F+ + GRPV+VKL + L +DGYMN+ L TEE+I+G L G
Sbjct: 1 MSLPLDPKHFLNGLTGRPVMVKLKGEWSTKATLVSVDGYMNMQLANTEEHIDGVLSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ F VLYI
Sbjct: 61 EVF----KVLYI 68
>gi|410955248|ref|XP_003984268.1| PREDICTED: uncharacterized protein LOC101089093 [Felis catus]
Length = 285
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F++ + G+PV+ KL S ++Y+ L DGYMN+ L E+YI+G +
Sbjct: 202 MSLPLNPKTFLKGLTGKPVMTKLKSRMEYKDHLVSADGYMNMQLANAEKYIDGASSGHFS 261
Query: 61 DTFIRGNNVLY 71
NNVLY
Sbjct: 262 QVITGCNNVLY 272
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+PV+V + +YRGVL D ++N+ L+ EE ING+ K + +RG+NV+YIS
Sbjct: 17 KPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYISP 74
>gi|313244351|emb|CBY15159.1| unnamed protein product [Oikopleura dioica]
Length = 61
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
++Y+G L +DGYMN+ L +EEYI+G L G+ IR NNVLYI
Sbjct: 1 MEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNNVLYI 46
>gi|323454563|gb|EGB10433.1| hypothetical protein AURANDRAFT_22949 [Aureococcus
anophagefferens]
Length = 98
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 15/79 (18%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG-------- 60
F+ + G+ V+VKL G++Y G L +D YMN+ L T+EYI+G++ + G
Sbjct: 8 PFLNDLTGKNVLVKLKWGMEYEGKLLSVDSYMNVQLGDTKEYIDGEMAGELGARPAPAFS 67
Query: 61 -------DTFIRGNNVLYI 72
+ IR NNV+Y+
Sbjct: 68 SPTDHKREVLIRCNNVMYL 86
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L Q ++G PV+V L + RGVL D +MN+ L++ EE +G + K G
Sbjct: 3 KRPLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEVTDGATQ-KIGTLI 61
Query: 64 IRGNNVLYIS 73
+RG+NV+YIS
Sbjct: 62 VRGDNVIYIS 71
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+PV+V + +YRGVL D ++N+ L+ EE ING+ K + +RG+NV+YIS
Sbjct: 17 KPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYISP 74
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RG+L D +MN+ L EE +G++ + G IRG+N++YIS
Sbjct: 20 PVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQDGEVTRRLGVVLIRGDNIVYISP 76
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+VKL G +RG L D +MN+ L+ TEE G+ K G +RG+NV+YIS
Sbjct: 16 PVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEIREGEDSKKLGTVVVRGDNVVYISP 72
>gi|451845060|gb|EMD58374.1| hypothetical protein COCSADRAFT_165582 [Cochliobolus sativus
ND90Pr]
gi|451992499|gb|EMD84982.1| hypothetical protein COCHEDRAFT_1024734 [Cochliobolus
heterostrophus C5]
Length = 93
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L TEE++NG G IR NN
Sbjct: 12 LLQSLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSGTLGQVLIRCNN 71
Query: 69 VLYI 72
VL+I
Sbjct: 72 VLWI 75
>gi|380488855|emb|CCF37095.1| small nuclear ribonucleoprotein F [Colletotrichum higginsianum]
Length = 88
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L EEYI+ +L G IR NN
Sbjct: 11 MLQDLVNQDIVVRLKWGETEYKGKLVSIDSYMNIQLSGAEEYIDQKLTGALGQVLIRCNN 70
Query: 69 VLYISTQKR 77
VL+I K+
Sbjct: 71 VLWIRGAKQ 79
>gi|444717889|gb|ELW58709.1| Small nuclear ribonucleoprotein F [Tupaia chinensis]
Length = 67
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 20 VVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+VKL G++Y+G L DGYMN+ L TEE I+G L G+ I NN+ YI
Sbjct: 1 MVKLKRGMEYKGYLVSADGYMNMQLANTEENIDGALSGHLGEVLITCNNIFYI 53
>gi|396462236|ref|XP_003835729.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
gi|312212281|emb|CBX92364.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
Length = 93
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L TEE++NG G IR NN
Sbjct: 12 LLQNLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSGTLGQVLIRCNN 71
Query: 69 VLYI 72
VL+I
Sbjct: 72 VLWI 75
>gi|189188806|ref|XP_001930742.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972348|gb|EDU39847.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 93
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L TEE++NG G IR NN
Sbjct: 12 LLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSGTLGQVLIRCNN 71
Query: 69 VLYI 72
VL+I
Sbjct: 72 VLWI 75
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
V++KL G ++RGVL+ D +MN+ L EE +G+ + G IRG+N++YIS +
Sbjct: 24 VLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGESSRRLGVVLIRGDNIVYISPE 80
>gi|330931612|ref|XP_003303470.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
gi|311320515|gb|EFQ88431.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
Length = 149
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L TEE++NG G IR NN
Sbjct: 68 LLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSGTLGQVLIRCNN 127
Query: 69 VLYI 72
VL+I
Sbjct: 128 VLWI 131
>gi|336271847|ref|XP_003350681.1| hypothetical protein SMAC_02352 [Sordaria macrospora k-hell]
gi|380094843|emb|CCC07345.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 90
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + V V+L G +Y G L +D YMNI L T+EYIN + G IR NN
Sbjct: 11 FLQDLVNSLVTVRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE G++ +K+G IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRGDNVVYVSP 72
>gi|215693002|dbj|BAG88422.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 59
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
++Y+G L +D YMN+ L TEEYI+GQ G+ IR NNVLY+
Sbjct: 1 MEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYL 46
>gi|429862333|gb|ELA36985.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 89
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + VV++L G +Y+G L +D YMNI L EEYI+ ++ G IR NN
Sbjct: 11 MLQDLVDKDVVIRLKWGDTEYKGKLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIRCNN 70
Query: 69 VLYISTQKR 77
VL+I K+
Sbjct: 71 VLWIRGAKQ 79
>gi|260941980|ref|XP_002615156.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC
42720]
gi|238851579|gb|EEQ41043.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC
42720]
Length = 105
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI---NGQLKNKYGDTFIR 65
F++ + + V+V+L + +Y+G L +D YMN+ L++T E I NG+ + K G+ FIR
Sbjct: 28 FLKTLLNKQVIVRLKWNKTEYKGTLLSIDNYMNLQLDETYEVIRDENGKREEKIGEIFIR 87
Query: 66 GNNVLYI 72
NNVL++
Sbjct: 88 CNNVLFV 94
>gi|171690156|ref|XP_001910003.1| hypothetical protein [Podospora anserina S mat+]
gi|170945026|emb|CAP71137.1| unnamed protein product [Podospora anserina S mat+]
Length = 91
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + + V+V+L + +Y+G L +D YMNI L TEE+I + G IR NN
Sbjct: 12 FLQDLVNKDVIVRLKWNETEYKGRLVSIDSYMNIQLANTEEFIEQKFTGTLGQVLIRCNN 71
Query: 69 VLYI 72
VLY+
Sbjct: 72 VLYV 75
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
+PV+V L G + RGVL D +MN+ L++ EE NGQ+ K G +RG+NV+YIS
Sbjct: 16 QPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEETENGQVV-KVGTLIVRGDNVIYIS 71
>gi|430811435|emb|CCJ31076.1| unnamed protein product [Pneumocystis jirovecii]
Length = 67
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+Q + G+ V+VKL G +Y G L D YMNI L TEE+++G+ + G+ IR
Sbjct: 12 FLQGLAGQTVIVKLKWGQEYIGFLQSTDSYMNIQLANTEEFVDGKNTGQLGEVLIR 67
>gi|121716524|ref|XP_001275833.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119403990|gb|EAW14407.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 88
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G +V++L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQARVGTELVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>gi|400598516|gb|EJP66225.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 86
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q++ + V V+L G +Y+G L LD YMN+ L T+EYI+ + G IR NN
Sbjct: 11 MLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYISDKFTADLGQVLIRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLWI 74
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+Q+ + V V+L + V+Y+G + +D YMN+ + EE +G+ YG +RGNNVL
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYGRVIVRGNNVL 73
Query: 71 YI 72
+I
Sbjct: 74 FI 75
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+Q+ + V V+L + V+Y+G + +D YMN+ + EE +G+ YG +RGNNVL
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYGRVIVRGNNVL 73
Query: 71 YI 72
+I
Sbjct: 74 FI 75
>gi|238488667|ref|XP_002375571.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
gi|317137842|ref|XP_003190097.1| small nuclear ribonucleoprotein F [Aspergillus oryzae RIB40]
gi|220697959|gb|EED54299.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
Length = 88
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G +V++L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQTRVGTEMVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>gi|85080344|ref|XP_956525.1| hypothetical protein NCU01614 [Neurospora crassa OR74A]
gi|30580500|sp|Q9P5Z8.1|RUXF_NEUCR RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|7800974|emb|CAB91372.1| related to snRNP protein SMX3 [Neurospora crassa]
gi|28917592|gb|EAA27289.1| predicted protein [Neurospora crassa OR74A]
gi|336468256|gb|EGO56419.1| hypothetical protein NEUTE1DRAFT_83630 [Neurospora tetrasperma
FGSC 2508]
gi|350289493|gb|EGZ70718.1| small nuclear ribonucleoprotein SmF [Neurospora tetrasperma FGSC
2509]
Length = 90
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + V ++L G +Y G L +D YMNI L T+EYIN + G IR NN
Sbjct: 11 FLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>gi|346976539|gb|EGY19991.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 79
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L EEYI+ ++ G IR NN
Sbjct: 1 MLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIRCNN 60
Query: 69 VLYI 72
VL+I
Sbjct: 61 VLWI 64
>gi|452838673|gb|EME40613.1| hypothetical protein DOTSEDRAFT_27245 [Dothistroma septosporum
NZE10]
Length = 89
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q + + V++K+ G +Y G L +D YMNI L E+ +GQ G IR NNV
Sbjct: 11 MLQSLVDKEVIIKIKWGQEYTGKLVSVDSYMNIQLSGCSEWKDGQDMGVLGQVLIRCNNV 70
Query: 70 LYISTQKRR 78
L+IS + ++
Sbjct: 71 LWISARNQK 79
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
V++KL G ++RGVL D +MN+ L EE +G+ + G IRG+N++YIS
Sbjct: 24 VLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLGVVLIRGDNIVYISP 79
>gi|448089999|ref|XP_004196959.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|448094377|ref|XP_004197990.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359378381|emb|CCE84640.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359379412|emb|CCE83609.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
Length = 100
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEE--YINGQLKNKY-GDTFIR 65
F++ + +PV+V+L + ++Y+G L +D YMN+ L+ T E + NG+ K + G+ FIR
Sbjct: 12 FLKTLINKPVIVRLKWNRMEYKGKLLAIDNYMNLQLDHTYECMFENGERKEELIGEIFIR 71
Query: 66 GNNVLYI 72
NNVLYI
Sbjct: 72 CNNVLYI 78
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+VKL G +RG L D +MN+ +++TEE G + G +RG+NV+YIS
Sbjct: 22 PVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEVAEGAVARNIGTVIVRGDNVVYISP 78
>gi|302419059|ref|XP_003007360.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261353011|gb|EEY15439.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 89
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + +VV+L G +Y+G L +D YMNI L EEYI+ ++ G IR NN
Sbjct: 11 MLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLWI 74
>gi|67901238|ref|XP_680875.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
gi|40742996|gb|EAA62186.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
Length = 873
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 16 GRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
G V+V+L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN+L++ +
Sbjct: 802 GTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIRCNNILWMGS 861
>gi|145251167|ref|XP_001397097.1| small nuclear ribonucleoprotein F [Aspergillus niger CBS 513.88]
gi|134082627|emb|CAK42521.1| unnamed protein product [Aspergillus niger]
Length = 88
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G ++++L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>gi|146323040|ref|XP_755885.2| small nuclear ribonucleoprotein SmF [Aspergillus fumigatus Af293]
gi|129558586|gb|EAL93847.2| small nuclear ribonucleoprotein SmF, putative [Aspergillus
fumigatus Af293]
Length = 88
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G ++++L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>gi|346324140|gb|EGX93737.1| small nuclear ribonucleoprotein SmF [Cordyceps militaris CM01]
Length = 86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q++ + V V+L G +Y+G L LD YMN+ L T+EYI + G IR NN
Sbjct: 11 MLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYIADKFTADLGQVLIRCNN 70
Query: 69 VLYI 72
VL+I
Sbjct: 71 VLWI 74
>gi|154413372|ref|XP_001579716.1| Sm protein [Trichomonas vaginalis G3]
gi|121913926|gb|EAY18730.1| Sm protein [Trichomonas vaginalis G3]
Length = 76
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS +++++ F+Q +P V L +G G L +D N+ L E NG KY
Sbjct: 1 MSAEDAMTGFLQATLQKPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSNGNEVGKYQ 60
Query: 61 DTFIRGNNVLYIST 74
FIRGN V++++T
Sbjct: 61 SIFIRGNQVVHVAT 74
>gi|425767171|gb|EKV05747.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum Pd1]
gi|425769096|gb|EKV07603.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum PHI26]
Length = 88
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G V+++L G +Y+G+L +D Y+N+ L T+E+I+G+ G IR NN
Sbjct: 11 FLQARVGTEVLIRLKWGQTEYKGILESVDSYINVLLRDTQEFIDGKPTGALGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>gi|46108998|ref|XP_381557.1| hypothetical protein FG01381.1 [Gibberella zeae PH-1]
gi|408391969|gb|EKJ71335.1| hypothetical protein FPSE_08574 [Fusarium pseudograminearum
CS3096]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
++++ + V+V+L G +Y+G L +D YMNI L TEEYI + G IR NN
Sbjct: 11 MLEELVSKQVLVRLKWGETEYKGTLVSIDSYMNIQLSGTEEYIADKPTGSLGQVLIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|452978679|gb|EME78442.1| hypothetical protein MYCFIDRAFT_36806, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 87
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q + + VVVK+ G +Y G L +D YMNI L +E+ +G G IR NNV
Sbjct: 9 MLQGLVNKEVVVKIKWGQEYTGRLVSVDSYMNIQLSGAQEWKDGVDNGVLGQVLIRCNNV 68
Query: 70 LYISTQKRR 78
L+IS +K +
Sbjct: 69 LWISARKSK 77
>gi|281344696|gb|EFB20280.1| hypothetical protein PANDA_013190 [Ailuropoda melanoleuca]
Length = 75
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ + GRPV+ +L G++ +G L + GYMN+ L +E I+G L + + I+ NN
Sbjct: 6 PFLNGLPGRPVMGELQWGMECKGSLVLVGGYMNMQLANVKERIDGILSGRLSEVLIKRNN 65
Query: 69 VLYISTQK 76
V YI + +
Sbjct: 66 VFYIRSTE 73
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+Q+ + V V+L + V+Y+G + +D YMN+ + EE G+ YG +RGNNVL
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHEGKTIANYGRVIVRGNNVL 73
Query: 71 YI 72
+I
Sbjct: 74 FI 75
>gi|310800295|gb|EFQ35188.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 89
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + VV++L G +Y+G L +D YMN+ L EEYI+ ++ G IR NN
Sbjct: 11 MLQDLVNQDVVIRLKWGETEYKGKLVSIDSYMNVQLSGAEEYIDQKMTGALGQVLIRCNN 70
Query: 69 VLYISTQKR 77
VL+I K+
Sbjct: 71 VLWIRGAKQ 79
>gi|330038475|ref|XP_003239607.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
gi|327206531|gb|AEA38709.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
Length = 88
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
++ + + + +KL GVDY+G+L +D Y+N+ L TEE+ N G+ FIR NN+
Sbjct: 20 YLLSLKNKKIFIKLKWGVDYKGILMSVDRYLNLHLLNTEEWKNNLKIGYLGEIFIRCNNI 79
Query: 70 LYIS 73
+++
Sbjct: 80 QFLT 83
>gi|327311719|ref|YP_004338616.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
gi|326948198|gb|AEA13304.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
Length = 86
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGN 67
+ + ++ + VV +L V RG+LS D MN+ L++ EE NG K KYG IRG+
Sbjct: 15 KVLSKMVNKVVVARLKGDVVVRGILSIYDSCMNLVLDEAEELDKNGATKMKYGRILIRGS 74
Query: 68 NVLYISTQK 76
++YIS+++
Sbjct: 75 QIIYISSEE 83
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE +G++ K G IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELQGYDVHMNLVLDNAEELKDGEIVRKLGSVVIRGDNVVYLSP 72
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V++KL G ++RGVL D +MN+ L EE +G+ + G IRG+N++YIS
Sbjct: 44 VLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLGVVLIRGDNIVYIS 98
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K L Q ++ +PV+V L G + RGVL D +MN+ L++ EE GQ ++ G
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEEIEGGQSRS-VGTLI 61
Query: 64 IRGNNVLYIST 74
+RG+NV+YIS
Sbjct: 62 VRGDNVIYISP 72
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+Q+ + V V+L + +Y+G + +D YMN+ + EE+ + ++ YG +RGNNVL
Sbjct: 39 LQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVANYGRVIVRGNNVL 98
Query: 71 YI 72
+I
Sbjct: 99 FI 100
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV+V+L G ++RG L D +MN+ L EE NG++ K G IRG+ V+++S
Sbjct: 16 PVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L G +RG L D +MN+ LE TEE G + K G +RG+NV+YIS
Sbjct: 16 PVIVRLKDGRAFRGELQGYDIHMNLVLENTEEIAEGTAR-KIGAVIVRGDNVVYISP 71
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K + Q ++ +PV++ L G + +GVL D +MN+ L++ EE + GQ ++ G
Sbjct: 8 KRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQGQAQS-IGTLI 66
Query: 64 IRGNNVLYISTQKR 77
IRG+NV+YIS +
Sbjct: 67 IRGDNVIYISPNPQ 80
>gi|145592526|ref|YP_001154528.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005495|ref|YP_005261167.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145284294|gb|ABP51876.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160948|gb|AFA40560.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 86
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-GQLKNKYGDTFIRGN 67
+ + ++ + +V KL GV +GVL+ DG MN+ L+ E N G+ K +YG +RG+
Sbjct: 15 KVLTKMLNKEIVAKLKGGVAIKGVLTAYDGCMNLVLDSAAELDNSGEPKTRYGRIVVRGS 74
Query: 68 NVLYIST 74
V+Y+S
Sbjct: 75 QVIYVSA 81
>gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574151|pdb|1N9S|B Chain B, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574152|pdb|1N9S|C Chain C, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574153|pdb|1N9S|D Chain D, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574154|pdb|1N9S|E Chain E, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574155|pdb|1N9S|F Chain F, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574156|pdb|1N9S|G Chain G, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574157|pdb|1N9S|H Chain H, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574158|pdb|1N9S|I Chain I, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574159|pdb|1N9S|J Chain J, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574160|pdb|1N9S|K Chain K, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574161|pdb|1N9S|L Chain L, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574162|pdb|1N9S|M Chain M, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574163|pdb|1N9S|N Chain N, Crystal Structure Of Yeast Smf In Spacegroup P43212
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVS----------GVDYRGVLSCLDGYMNIALEQTEEY 50
MS +S +Q ++ +P + LV+ +YRG L D Y N+ L + EE+
Sbjct: 8 MSESSDISA-MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEF 66
Query: 51 INGQLKNKYGDTFIRGNNVLYI 72
+ G G+ FIR NNVLYI
Sbjct: 67 VAGVSHGTLGEIFIRSNNVLYI 88
>gi|242796981|ref|XP_002482917.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
gi|218719505|gb|EED18925.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
Length = 357
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 8 SQFIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+Q Q+ G +V++L G +YRG L +D YMN+ L TEEYI+G+ G IR
Sbjct: 279 TQITTQV-GTELVIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLVLIRC 337
Query: 67 NNVLYIST 74
NN+ +++
Sbjct: 338 NNIFSMAS 345
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
V+V+L ++RGVL D +MN+ L++ EE +G++ K G IRG+NV+Y+S
Sbjct: 17 VIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRGDNVVYVSP 72
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
L Q ++ +PV++ L G + RGVL D +MN+ L++ EE ++G ++ K G +R
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEEEMDGAVQ-KLGTLIVR 63
Query: 66 GNNVLYIST 74
G+NV+YI+
Sbjct: 64 GDNVIYITP 72
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV+V+L G ++RG L D +MN+ L EE NG++ K G IRG+ V+++S +
Sbjct: 15 PVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEIQNGEVVRKLGSVVIRGDTVVFVSPSQ 73
>gi|50308333|ref|XP_454168.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643303|emb|CAG99255.1| KLLA0E04929p [Kluyveromyces lactis]
Length = 112
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+ Q+ + V+V L + + Y+G L +D Y N+ L EE IN K GD FIR NN
Sbjct: 14 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNN 73
Query: 69 VLYI 72
VLY+
Sbjct: 74 VLYV 77
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE +G++ +K+ IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRGDNVVYVSP 72
>gi|390937928|ref|YP_006401666.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
gi|390191035|gb|AFL66091.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
Length = 93
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGD 61
R S + ++ G+ V+V++ G++Y G L +D MNI L EY +G+ ++YG
Sbjct: 9 RPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYSGDGRPTSRYGK 68
Query: 62 TFIRGNNVLYIST 74
IRG++V +IST
Sbjct: 69 IIIRGSHVEFIST 81
>gi|126644023|ref|XP_001388172.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117249|gb|EAZ51349.1| hypothetical protein cgd1_2690 [Cryptosporidium parvum Iowa II]
Length = 67
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 29 YRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
Y+G L D YMNI L EE+I+ K G FIR NNVLYIS
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYIS 47
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV+V+L G ++RG+L+ D +MN+ L+ EE G++ K G IRG+ V+++S
Sbjct: 16 PVLVRLKGGREFRGILNGYDIHMNLVLQNAEEIQGGEVIRKLGSVVIRGDTVVFVSPSP 74
>gi|45190332|ref|NP_984586.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|44983228|gb|AAS52410.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|374107801|gb|AEY96708.1| FAEL274Cp [Ashbya gossypii FDAG1]
Length = 86
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++Q+ + +VV L + YRG L D Y NI L + EE+I K GD FIR NN
Sbjct: 12 FLRQLVDQYIVVTLKFNNTRYRGKLMSTDNYFNIRLTEAEEFIGDVSKGMVGDLFIRCNN 71
Query: 69 VLYISTQKRRG 79
VL+I R
Sbjct: 72 VLWIGEDLTRA 82
>gi|67624211|ref|XP_668388.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659578|gb|EAL38148.1| hypothetical protein Chro.10304 [Cryptosporidium hominis]
Length = 67
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 29 YRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
Y+G L D YMNI L EE+I+ K G FIR NNVLYIS
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYIS 47
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE +G++ K G IRG+NV+Y+S
Sbjct: 16 PVIVRLRGSREFRGELQGYDVHMNLVLDNAEELNDGEIVRKLGSVVIRGDNVVYVSP 72
>gi|320100411|ref|YP_004176003.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319752763|gb|ADV64521.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 93
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-GQLKNKYGD 61
R S + ++ G+ ++V++ G +Y G L +DG MNI L EY + G+ ++YG
Sbjct: 9 RPPSPMKVLKSAEGQIILVRIKGGYEYIGTLDLIDGTMNIVLSDCTEYSSEGKPTSRYGR 68
Query: 62 TFIRGNNVLYIST 74
IRG++V +IST
Sbjct: 69 IIIRGSHVEFIST 81
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L++ EE G + K G IRG+N++Y+S
Sbjct: 16 PVIVRLKGAREFRGKLQGYDVHMNLVLDEAEELKEGDIVRKLGSVVIRGDNIVYVSP 72
>gi|50422347|ref|XP_459736.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
gi|49655404|emb|CAG87972.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEE--YINGQLKNKY-GDTFIR 65
F++ + G+ V+V+L + +Y+G L +D YMN+ L++T E Y +G+ K + G+ FIR
Sbjct: 12 FLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEKKEEVIGEIFIR 71
Query: 66 GNNVLYISTQKR 77
NNVL+I K
Sbjct: 72 CNNVLFIREDKE 83
>gi|123474198|ref|XP_001320283.1| Sm protein [Trichomonas vaginalis G3]
gi|121903085|gb|EAY08060.1| Sm protein [Trichomonas vaginalis G3]
Length = 98
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 9 QFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+F++ + + +V+KL ++Y G L D MNI L +T EY+ G+ + GD IR N
Sbjct: 11 KFMESLLNKQIVIKLKWENIEYVGTLISFDERMNIHLSETSEYVGGKTEGVMGDVIIRCN 70
Query: 68 NVLYI 72
N+L+I
Sbjct: 71 NILHI 75
>gi|124001183|ref|XP_001277012.1| Sm protein [Trichomonas vaginalis G3]
gi|121918998|gb|EAY23764.1| Sm protein [Trichomonas vaginalis G3]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS ++++ F+Q +P V L +G G L +D N+ L E NG +Y
Sbjct: 1 MSADDAMTGFLQATLQKPTHVVLSTGSQLVGTLCTIDALFNLVLRDAVEMSNGNEVGRYQ 60
Query: 61 DTFIRGNNVLYIST 74
FIRGN V++++T
Sbjct: 61 SIFIRGNQVIHVAT 74
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
L Q ++ +PV++ L G + RG+L D +MN+ L++ EE ++G + K G +R
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVLDKAEEEVDGAAQ-KLGTLIVR 63
Query: 66 GNNVLYIST 74
G+NV+YI+
Sbjct: 64 GDNVIYITP 72
>gi|315426676|dbj|BAJ48302.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315428002|dbj|BAJ49591.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485412|dbj|BAJ51066.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 77
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+ L+ ++QI+ +PV V L + Y G + DGYMN+ LE EY+ Y I
Sbjct: 6 KPLTTLMRQIN-KPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVLI 64
Query: 65 RGNNVLYI 72
RGNN++YI
Sbjct: 65 RGNNIMYI 72
>gi|401826016|ref|XP_003887102.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
gi|392998260|gb|AFM98121.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
Length = 81
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
KE+ QF+Q++ G+ VVV L G Y GVL D Y NI L++ E +G+ + G+
Sbjct: 11 KENPKQFLQRMKGKSVVVSLKWGQSYEGVLVMSDNYFNILLDKCIEK-DGEASMEVGEVS 69
Query: 64 IRGNNVLYIS 73
IR NN+ IS
Sbjct: 70 IRCNNIKSIS 79
>gi|389644698|ref|XP_003719981.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|351639750|gb|EHA47614.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|440470659|gb|ELQ39721.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae Y34]
gi|440487924|gb|ELQ67688.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae P131]
Length = 88
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + V V+L G +Y+G L +D YMNI L +EYI+ +L+ G IR NN
Sbjct: 11 MLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQILIRCNN 70
Query: 69 VLYIST 74
VL++ +
Sbjct: 71 VLWVRS 76
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE G++ +K+ IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVSP 72
>gi|218883408|ref|YP_002427790.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
gi|218765024|gb|ACL10423.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGD 61
R S + ++ G+ V+V++ G++Y G L +D MNI L EY +G+ ++YG
Sbjct: 9 RPPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGK 68
Query: 62 TFIRGNNVLYIST 74
IRG++V +IST
Sbjct: 69 IIIRGSHVEFIST 81
>gi|119481967|ref|XP_001261012.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409166|gb|EAW19115.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 84
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 8 SQFIQQIH-GRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S IQ++ G ++++L G +Y+G L +D YMN+ L TEE+I+G+ G IR
Sbjct: 4 SFLIQRLRVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 63
Query: 66 GNNVLYIST 74
NN+L++ +
Sbjct: 64 CNNILWMGS 72
>gi|406861634|gb|EKD14688.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 80
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + VV++L G +Y+G L +D YMNI L EE+I+ ++ + G IR NN
Sbjct: 1 MLQNLVNEEVVIRLKWGQTEYKGRLVSIDSYMNIQLSGAEEWIDQEMTSVLGQVLIRCNN 60
Query: 69 VLYI 72
VL+I
Sbjct: 61 VLWI 64
>gi|6325440|ref|NP_015508.1| Smx3p [Saccharomyces cerevisiae S288c]
gi|1711405|sp|P54999.1|RUXF_YEAST RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|786316|gb|AAB68115.1| Smx3p: Sm or Sm-like snRNP protein [Saccharomyces cerevisiae]
gi|809101|emb|CAA58022.1| snRNP protein SmX3 [Saccharomyces cerevisiae]
gi|45269988|gb|AAS56375.1| YPR182W [Saccharomyces cerevisiae]
gi|151942952|gb|EDN61298.1| Sm F [Saccharomyces cerevisiae YJM789]
gi|190408104|gb|EDV11369.1| small nuclear ribonucleoprotein F [Saccharomyces cerevisiae
RM11-1a]
gi|256272443|gb|EEU07425.1| Smx3p [Saccharomyces cerevisiae JAY291]
gi|259150339|emb|CAY87142.1| Smx3p [Saccharomyces cerevisiae EC1118]
gi|285815706|tpg|DAA11598.1| TPA: Smx3p [Saccharomyces cerevisiae S288c]
gi|349581979|dbj|GAA27136.1| K7_Smx3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296184|gb|EIW07287.1| Smx3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 86
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVS----------GVDYRGVLSCLDGYMNIALEQTEEY 50
MS +S +Q ++ +P + LV+ +YRG L D Y N+ L + EE+
Sbjct: 1 MSESSDISA-MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEF 59
Query: 51 INGQLKNKYGDTFIRGNNVLYI 72
+ G G+ FIR NNVLYI
Sbjct: 60 VAGVSHGTLGEIFIRCNNVLYI 81
>gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574144|pdb|1N9R|B Chain B, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574145|pdb|1N9R|C Chain C, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574146|pdb|1N9R|D Chain D, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574147|pdb|1N9R|E Chain E, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574148|pdb|1N9R|F Chain F, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574149|pdb|1N9R|G Chain G, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
Length = 93
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVS----------GVDYRGVLSCLDGYMNIALEQTEEY 50
MS +S +Q ++ +P + LV+ +YRG L D Y N+ L + EE+
Sbjct: 8 MSESSDISA-MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEF 66
Query: 51 INGQLKNKYGDTFIRGNNVLYI 72
+ G G+ FIR NNVLYI
Sbjct: 67 VAGVSHGTLGEIFIRCNNVLYI 88
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGD 61
++E + ++ + V+++L + ++ RG ++ D +MNI L+ EE NG+LK K G
Sbjct: 2 QQERPFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGELKAKLGT 61
Query: 62 TFIRGNNVLYIS 73
+RG N++++S
Sbjct: 62 ILLRGGNIIFVS 73
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 9 QFIQQ----IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+F+Q + G V+VKL G RG L D +MN+ L+ TEE I+ + K G I
Sbjct: 7 KFVQDELSSVVGSTVLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEIIDPKTSIKRGMVVI 66
Query: 65 RGNNVLYIS 73
RG+ VL++S
Sbjct: 67 RGDTVLFVS 75
>gi|164657710|ref|XP_001729981.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
gi|159103875|gb|EDP42767.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
Length = 94
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNI--------------ALEQTEEYINGQL 55
F+QQ G+ V+++L G++Y+G L D YMN L TEE +G+
Sbjct: 11 FLQQQIGKKVLIRLKWGLEYKGFLVSTDNYMNFQVRWMGRRLSCSYTQLANTEEIQDGKS 70
Query: 56 KNKYGDTFIRGNNVLYI 72
G+ FIR NNVLY+
Sbjct: 71 NGTLGEVFIRCNNVLYL 87
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
R V++ + +Y G+L D YMNI L+ E ING+ K Y +RG+NV+++S K
Sbjct: 20 RNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVIFVSPSK 79
Query: 77 RRG 79
G
Sbjct: 80 GDG 82
>gi|241955739|ref|XP_002420590.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223643932|emb|CAX41669.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 131
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 8 SQFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNK----YGDT 62
+ F++ + G+ ++V+L + Y+G+L +D YMN+ L+QT E I+ + G+
Sbjct: 10 TPFLKSLIGKSIIVRLKWNKTQYKGILISIDNYMNLQLDQTYEIISDDINTTKEELIGEI 69
Query: 63 FIRGNNVLYI 72
FIR NNVL+I
Sbjct: 70 FIRCNNVLFI 79
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS SL + + + G V+V+L +G RG+L D +MNI LE T+E I+ +NK G
Sbjct: 1 MSSDVSL-KILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDENTQNKLG 59
Query: 61 DTFIRGNNVLYIS 73
+RG++++ IS
Sbjct: 60 TIVVRGDSIVMIS 72
>gi|255552678|ref|XP_002517382.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223543393|gb|EEF44924.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 62
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+G L+ +D YMN+ L TEEYI+GQ G+ IR NNVLY+
Sbjct: 5 QGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYL 47
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RGVL D ++N+ LE EE I+G + K G +R
Sbjct: 11 TLGATLQDSIGKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEIIDGNV-FKRGTIVVR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|18312096|ref|NP_558763.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159526|gb|AAL62945.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 85
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGN 67
+ + ++ + ++ +L GV +GVL+ DG MN+ L E +G+ K +YG IRG+
Sbjct: 14 KVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGS 73
Query: 68 NVLYISTQK 76
V+Y+ST +
Sbjct: 74 QVIYVSTSE 82
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ LE EE I+G + K G +R
Sbjct: 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ LE EE I+G + K G +R
Sbjct: 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ L+ EE I+G + K G IR
Sbjct: 11 TLGATLQDAIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVIR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|398392379|ref|XP_003849649.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
gi|339469526|gb|EGP84625.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
Length = 89
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q + + V++++ G +Y G L +D YMN+ L +E+ +G + G IR NNV
Sbjct: 11 MLQALVNQDVLIRIKWGQEYTGRLVSVDSYMNVQLGNAKEWKDGDEQGDLGQVLIRCNNV 70
Query: 70 LYISTQKRRGV 80
L+IS +G
Sbjct: 71 LWISAYNPKGT 81
>gi|403216561|emb|CCK71058.1| hypothetical protein KNAG_0F03940 [Kazachstania naganishii CBS
8797]
Length = 87
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + VVVKL + YRG L D Y N+ L EE I + G+ FIR NN
Sbjct: 12 FLRSLVNERVVVKLKFNDTTYRGTLLSTDNYFNLQLADAEEIIGSTNRGTVGEIFIRCNN 71
Query: 69 VLYISTQK 76
VL+I T +
Sbjct: 72 VLWIGTDQ 79
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL G + RG+L D ++N+ LE EE I+ + K G +R
Sbjct: 7 TLGATLQDSIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVIDNVIL-KRGTMVVR 65
Query: 66 GNNVLYIS 73
G NVL++S
Sbjct: 66 GENVLFVS 73
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L G ++RG L D +MN+ LE EE + K G +RG+ V+Y+S
Sbjct: 16 PVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEESRKLGTIIVRGDTVVYVSP 72
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL G + RG+L D ++N+ LE EE ++ + K G +R
Sbjct: 11 TLGATLQDSIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVVDNNI-FKRGTMVVR 69
Query: 66 GNNVLYIS 73
G NVL++S
Sbjct: 70 GENVLFVS 77
>gi|363750217|ref|XP_003645326.1| hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888959|gb|AET38509.1| Hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 9 QFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
F++Q+ + +VV L + Y+G + D Y NI L + EE++ K GD FIR N
Sbjct: 11 PFLRQLVDKYIVVTLKFNNTKYKGKMVSTDNYFNIQLTEAEEFVGDVSKGVVGDIFIRCN 70
Query: 68 NVLYI 72
NVL+I
Sbjct: 71 NVLWI 75
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ L+ EE I+G + K G +R
Sbjct: 11 TLGATLQDSIGKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEIIDGNVY-KRGTIVVR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|344301854|gb|EGW32159.1| hypothetical protein SPAPADRAFT_61242 [Spathaspora passalidarum
NRRL Y-27907]
Length = 117
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI-------NGQLKNKYGD 61
F++ + G+ V+V+L + +YRG L +D YMN+ L+QT E I + + G+
Sbjct: 12 FLKSLIGKQVIVRLKWNKTEYRGTLISIDNYMNLQLDQTYEIIYEVEDGNETKKEESIGE 71
Query: 62 TFIRGNNVLYISTQK 76
FIR NNVL++ K
Sbjct: 72 IFIRCNNVLFVREAK 86
>gi|118345766|ref|XP_976713.1| Sm protein [Tetrahymena thermophila]
gi|89288130|gb|EAR86118.1| Sm protein [Tetrahymena thermophila SB210]
Length = 845
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNI------------ALEQTEEYINGQLKN 57
F++ + G+ +VVKL G + +G L D YMN+ L EE++ G+ K
Sbjct: 765 FLEDLLGKQIVVKLKWGWELKGTLLSTDLYMNLHQSHQFNFQNSTKLLNAEEWVKGENKG 824
Query: 58 KYGDTFIRGNNVLYI 72
G+ IR NNVLYI
Sbjct: 825 TLGEILIRCNNVLYI 839
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+V+L ++RG L D +MN+ L++ EE G++ K G +RG+NV+Y+S
Sbjct: 17 VIVRLKGAREFRGTLQGYDVHMNLVLDEAEEIKEGEIIRKIGSVVVRGDNVVYVS 71
>gi|345316457|ref|XP_001515850.2| PREDICTED: acylglycerol kinase, mitochondrial-like [Ornithorhynchus
anatinus]
Length = 668
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRG 31
RK++ S F++QI GRPVVVKL SGVDYRG
Sbjct: 536 RKQTPSDFLKQIIGRPVVVKLNSGVDYRG 564
>gi|402084326|gb|EJT79344.1| small nuclear ribonucleoprotein F [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 85
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+Q + + V V+L G +Y+G L +D YMNI L +EYI+ +L G IR NN
Sbjct: 11 MLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSGAQEYIDQKLAGDLGQILIRCNN 70
Query: 69 VLYI 72
VL++
Sbjct: 71 VLWV 74
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S +++ + V+V L +GV RG+L D ++N+ L+ EE + G K IR
Sbjct: 3 SAMRYLAKSMNGSVLVILKNGVYVRGILKSYDNHLNLILDNAEEIMEGNAKKLGKRVLIR 62
Query: 66 GNNVLYISTQK 76
G+NV+ ISTQK
Sbjct: 63 GDNVIAISTQK 73
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L G ++RG L D +MN+ L+ EE + K G +RG+ V+Y+S
Sbjct: 16 PVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTIIVRGDTVVYVSP 72
>gi|401839563|gb|EJT42734.1| SMX3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 77
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + V VKL + +YRG L D Y N+ L++ EE++ G G+ FIR NN
Sbjct: 9 FLKGLVNHRVGVKLKFNNTEYRGTLVSTDNYFNLQLDEAEEFVGGVSHGILGEIFIRCNN 68
Query: 69 VLYI 72
VLY+
Sbjct: 69 VLYV 72
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ L+ EE I+G + K G +R
Sbjct: 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVVR 69
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 70 GENVLFIS 77
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
V++KL G ++RG L D +MN+ L EE +G+ + G +RG+N++YIS
Sbjct: 25 VLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIKDGESICRLGVVLVRGDNIVYISP 80
>gi|385805333|ref|YP_005841731.1| Like-Sm ribonucleoprotein, core [Fervidicoccus fontis Kam940]
gi|383795196|gb|AFH42279.1| Like-Sm ribonucleoprotein, core [Fervidicoccus fontis Kam940]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 1 MSRKESLS-QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--NGQLKN 57
MS K L +++Q G V+VKL G +Y G L D MN+ L+ E G+ K
Sbjct: 8 MSSKTQLPLKYLQDAKGNNVLVKLKDGGEYIGELDFSDSTMNVILKNCTEVKERTGEPKA 67
Query: 58 KYGDTFIRGNNVLYISTQ 75
KYG IRG+ +L+IS +
Sbjct: 68 KYGTILIRGSQILFISLE 85
>gi|296212953|ref|XP_002753080.1| PREDICTED: aldehyde dehydrogenase, mitochondrial [Callithrix
jacchus]
Length = 506
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 21 VKLVSGVDY-RGVLSCLDGYMNIALEQTEEYINGQLKNK 58
+K SG+ RG+ C YMN ALEQTEEY+NGQLKNK
Sbjct: 423 IKFWSGLSRGRGLPRC---YMNTALEQTEEYVNGQLKNK 458
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY--INGQLKNKY 59
S KE +++ HG V V+L +G G L D MN+ L+ E +G++K
Sbjct: 3 SGKELPLSHLKKSHGAEVTVRLKNGSQIVGKLIVYDEMMNLVLDSAREVDPASGEVKRSV 62
Query: 60 GDTFIRGNNVLYISTQ 75
G FIRGNNVL+++ +
Sbjct: 63 GTLFIRGNNVLFVTLE 78
>gi|320582096|gb|EFW96314.1| Core Sm protein Sm F [Ogataea parapolymorpha DL-1]
Length = 87
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYIN--GQLKNKYGDT-FIR 65
++Q + G+PVV+KL + ++Y G L +D YMN+ L++ + I+ + + GD F+R
Sbjct: 11 YLQSLVGKPVVIKLKFNNIEYHGKLLSIDNYMNLLLDKDVKEIDTAAETSTELGDELFVR 70
Query: 66 GNNVLYI 72
NNVL++
Sbjct: 71 CNNVLWV 77
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 28 DYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+YRGVL D ++N+ L+ EE ING+ K + +RG+NV+YIS
Sbjct: 6 EYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYISP 52
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L G ++RG L D +MN+ L+ EE + K G +RG+ V+Y+S
Sbjct: 16 PVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEESKKLGTIIVRGDTVVYVSP 72
>gi|352682842|ref|YP_004893366.1| hypothetical protein TTX_1667 [Thermoproteus tenax Kra 1]
gi|350275641|emb|CCC82288.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Thermoproteus tenax Kra 1]
Length = 86
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-GQLKNKYGDTFIRGN 67
+ + ++ + VV +L V RGVLS D MN+ L+ EE G K +YG IRG+
Sbjct: 15 KVLSKMVNKVVVARLKGDVVVRGVLSIYDSCMNLVLDNAEELDKVGNAKMRYGRILIRGS 74
Query: 68 NVLYISTQK 76
++YIS+++
Sbjct: 75 QIIYISSEE 83
>gi|449018669|dbj|BAM82071.1| Sm protein F [Cyanidioschyzon merolae strain 10D]
Length = 90
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ + + G V V+L ++Y G+L+ D Y N+ LE EE GD IR N
Sbjct: 13 TNLLSALQGNRVSVRLKWDLEYTGLLASYDSYFNLELEHAEELQPDGSSLPLGDMIIRCN 72
Query: 68 NVLYI 72
NVLYI
Sbjct: 73 NVLYI 77
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
R V++ + +Y G+L D YMN+ L+ E ING+ K + +RG+NV+++S K
Sbjct: 24 RNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVIFVSPSK 83
>gi|315425168|dbj|BAJ46838.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 66
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+PV V L + Y G + DGYMN+ LE EY+ Y IRGNN++YI
Sbjct: 6 KPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVLIRGNNIMYI 61
>gi|374327633|ref|YP_005085833.1| Sm-like protein [Pyrobaculum sp. 1860]
gi|356642902|gb|AET33581.1| Sm-like protein [Pyrobaculum sp. 1860]
Length = 67
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYIST 74
+ +V +L GV RGVL+ DG MN+ L+ E +G+ +YG +RG+ V+Y+ST
Sbjct: 4 KEIVARLKGGVAVRGVLTAYDGCMNLVLDDAAELDKSGEPVTRYGRIVVRGSQVIYVST 62
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
R V++ + +Y G+L D YMN+ L+ E ING+ K + +RG+NV+++S K
Sbjct: 20 RNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVIFVSPSK 79
>gi|238882707|gb|EEQ46345.1| small nuclear ribonucleoprotein F [Candida albicans WO-1]
Length = 126
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 8 SQFIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI------NGQLKNKYG 60
+ F++ + G+ ++V+L + Y+G L +D YMN+ L+QT E I + + G
Sbjct: 9 TPFLKSLIGKTIIVRLKWNKTQYKGTLVSIDNYMNLQLDQTYEIISESTDTDATKEELIG 68
Query: 61 DTFIRGNNVLYISTQKRR 78
+ FIR NNVL+I K +
Sbjct: 69 EIFIRCNNVLFIREYKEQ 86
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL RG L D +MN+ LE +EE +N K G I
Sbjct: 3 ETAHKVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIVI 62
Query: 65 RGNNVLYIS 73
RG+NV+ +S
Sbjct: 63 RGDNVILVS 71
>gi|396081223|gb|AFN82841.1| small nuclear ribonucleoprotein F [Encephalitozoon romaleae
SJ-2008]
Length = 81
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
KE+ QF+Q++ R V V L G Y GVL D Y N+ L++ E G+ K G+
Sbjct: 11 KENPKQFLQRMKNRNVSVCLKWGQVYEGVLVTSDNYFNVLLDECVEK-EGETSTKVGEVS 69
Query: 64 IRGNNVLYIS 73
IR NN+ IS
Sbjct: 70 IRCNNIKSIS 79
>gi|124026985|ref|YP_001012305.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
gi|123977679|gb|ABM79960.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
Length = 93
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL--KNKY 59
++ S + +++ GR + VKL G +Y G L D MN+ L++ E G + K KY
Sbjct: 6 AKPVSPLRVLREAVGRVIFVKLKDGSEYVGKLVATDPTMNLVLDECVELKPGTMERKVKY 65
Query: 60 GDTFIRGNNVLYIST 74
G IRG++V+Y+S
Sbjct: 66 GRVLIRGSHVVYVSV 80
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+++L G ++RG+L D +MN+ L + EE + + G IRG+N++YIS
Sbjct: 24 VLIELKGGREFRGLLKSFDMHMNLVLNEAEELDGLETAKRLGIVLIRGDNIVYIS 78
>gi|385303687|gb|EIF47745.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 135
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGD-TFIR 65
F+Q + + V+VKL + ++Y G L +D YMN+ +++ + +NG+ + + GD FIR
Sbjct: 11 FLQSLLNKQVIVKLKFNSIEYHGKLLSIDNYMNLLMDKDVKEVNGKTREVSPLGDEMFIR 70
Query: 66 GNNVLYI 72
NNVL+I
Sbjct: 71 CNNVLWI 77
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL RG L D +MN+ LE +EE +N K G I
Sbjct: 9 ETAHKVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIVI 68
Query: 65 RGNNVLYIS 73
RG+NV+ +S
Sbjct: 69 RGDNVILVS 77
>gi|296241945|ref|YP_003649432.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296094529|gb|ADG90480.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 91
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKY 59
++R +S + ++ G+ V+VK+ G +Y G L +D MN+ + EY +G+ +Y
Sbjct: 5 LTRPQSPFKILKSSEGQIVLVKIKGGYEYVGNLDLIDNTMNVVMSNCTEYSKDGKPVARY 64
Query: 60 GDTFIRGNNVLYIS 73
G IRG+++ YIS
Sbjct: 65 GKLIIRGSHIQYIS 78
>gi|354547239|emb|CCE43973.1| hypothetical protein CPAR2_501980 [Candida parapsilosis]
Length = 132
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTFI 64
FI+ + G+ VVV+L + +YRG L D Y+N+ L+ T E I + + + G FI
Sbjct: 12 FIKSLIGQEVVVRLKWNKTEYRGQLMSTDNYLNLQLDNTFEIIYDSEDKFREEEIGSIFI 71
Query: 65 RGNNVLYISTQKRRGV 80
R NNVL+I K G
Sbjct: 72 RCNNVLFIREYKNEGT 87
>gi|313214484|emb|CBY40846.1| unnamed protein product [Oikopleura dioica]
Length = 74
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
++Y+G L +DGYMN+ L +EEYI+G L G+ IR NN
Sbjct: 1 MEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNN 42
>gi|449329072|gb|AGE95347.1| small nuclear ribonucleoprotein f [Encephalitozoon cuniculi]
Length = 81
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
KE+ QF+Q++ R V V L G Y G L D Y NI L++ E + G+ K G+
Sbjct: 11 KENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE-MEGEASVKIGEVS 69
Query: 64 IRGNNVLYIS 73
IR NN+ I
Sbjct: 70 IRCNNIKRIC 79
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTE-EYINGQLKNKYGDTFIRGNN 68
++ RP++V+L SG Y G+L+ DG+MN+ L+ + +G+ K + +IRGN
Sbjct: 7 LLRAAQNRPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIRGNM 66
Query: 69 VLYISTQ 75
V YI Q
Sbjct: 67 VKYIRLQ 73
>gi|356573341|ref|XP_003554820.1| PREDICTED: uncharacterized protein LOC100777432 [Glycine max]
Length = 154
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
G+PV+VKL G++Y+G +D +MN+ L EEY GQ + IRG
Sbjct: 10 GKPVIVKLKWGMEYKGYPVSIDSFMNLQLANIEEYNEGQFIVNLEEILIRG 60
>gi|237831965|ref|XP_002365280.1| U6 snRNA-associated Sm-like protein, putative [Toxoplasma gondii
ME49]
gi|211962944|gb|EEA98139.1| U6 snRNA-associated Sm-like protein, putative [Toxoplasma gondii
ME49]
Length = 86
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 34 SCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
+CLD MNIA+++ EE+++G YG + IRGNN
Sbjct: 38 TCLDDRMNIAMDKAEEFVDGNFVAAYGLSLIRGNN 72
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDT 62
K L Q ++ +PV++ L G + RGVL D +MN+ L++ EE NG + G
Sbjct: 3 KRPLEILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEEEGENGTV--SLGTL 60
Query: 63 FIRGNNVLYIST 74
+RG+NV+YIS
Sbjct: 61 IVRGDNVIYISP 72
>gi|297527121|ref|YP_003669145.1| hypothetical protein Shell_1145 [Staphylothermus hellenicus DSM
12710]
gi|297256037|gb|ADI32246.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 95
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIR 65
L I QI V+VK+ G +Y G L +D MN+ L +EY NG+ +YG IR
Sbjct: 19 LKSAINQI----VLVKIKDGHEYIGTLDMVDHTMNVVLSNCQEYGDNGKPTARYGKVLIR 74
Query: 66 GNNVLYIS 73
G+++++IS
Sbjct: 75 GSHIVFIS 82
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G +YRG L D ++N+ L + NG+ K YG IRG+NVL IS
Sbjct: 15 KEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIENGEPKKSYGKIVIRGDNVLAISP 72
>gi|70606592|ref|YP_255462.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449066813|ref|YP_007433895.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449069085|ref|YP_007436166.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567240|gb|AAY80169.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449035321|gb|AGE70747.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449037593|gb|AGE73018.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 87
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGDTFIRGNNVLYIS 73
V+VKL +G +Y G L DG MN+ L+ EY G KYG IRG+N+L+IS
Sbjct: 20 VLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDPVAKYGRVLIRGSNILFIS 76
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL RG L D +MN+ LE +EE ++ K G I
Sbjct: 7 ETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIII 66
Query: 65 RGNNVLYIS 73
RG+NV+ +S
Sbjct: 67 RGDNVILVS 75
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEE-YINGQLKNKYGDTFIRGNNVLYIS 73
G+ V+VKL + RG L D ++NI LE EE + +GQ + K G IRG+NV+ IS
Sbjct: 14 GQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQAR-KLGTVIIRGDNVIIIS 71
>gi|171186416|ref|YP_001795335.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170935628|gb|ACB40889.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 86
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-GQLKNKYGDTFIRGN 67
+ + ++ + VV +L GV RG L+ DG MN+ L+ E G+ +YG IRG+
Sbjct: 15 KVLTKMLNKEVVARLKGGVAVRGTLTAYDGCMNLVLDNAAELDKAGEPVARYGRIVIRGS 74
Query: 68 NVLYIST 74
V+Y+S
Sbjct: 75 QVIYVSA 81
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS
Sbjct: 23 KDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISP 80
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISPSE 74
>gi|391346676|ref|XP_003747595.1| PREDICTED: small nuclear ribonucleoprotein G-like [Metaseiulus
occidentalis]
Length = 76
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L D +MNI LE+ E + G + G T IRGN+++ + TQ+R
Sbjct: 29 GILRGFDPFMNIVLEEAFEEVKGGQRTPIGMTVIRGNSIVLLETQER 75
>gi|374629736|ref|ZP_09702121.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907849|gb|EHQ35953.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 78
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 25 SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
G +GVL+ +D ++NI ++Q EYIN + G IRG+N+L I+ +
Sbjct: 27 DGRKLKGVLAAVDEHLNIHMDQATEYINDERGRNLGTVVIRGSNILTIAPE 77
>gi|119872206|ref|YP_930213.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673614|gb|ABL87870.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 86
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-GQLKNKYGDTFIRGN 67
+ + ++ + +V +L GV +G L+ DG MN+ L+ E N G+ +YG +RG+
Sbjct: 15 KVLTKMLNKEIVARLKGGVAVKGTLTAYDGCMNLVLDNAAELNNSGEPVTRYGRIVVRGS 74
Query: 68 NVLYIST 74
V+Y+S
Sbjct: 75 QVIYVSA 81
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + +++ G V+VKL + RG L D ++N+ LE+ EE + K G I
Sbjct: 3 ETTHKLLEENLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTRKLGTLVI 62
Query: 65 RGNNVLYIS 73
RG+NV+ IS
Sbjct: 63 RGDNVVLIS 71
>gi|159041439|ref|YP_001540691.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920274|gb|ABW01701.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 86
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--NGQLKNKYGDTFIRGNNVLYIST 74
+ VVVKL +G G L +D MNI L+ EE Q+ +YG IRGN VLY+S
Sbjct: 22 KSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKVLIRGNQVLYVSV 81
Query: 75 Q 75
+
Sbjct: 82 R 82
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIVIRGDNVLAISPTE 74
>gi|374327713|ref|YP_005085913.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
gi|356642982|gb|AET33661.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
Length = 57
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
++VKL + RG+L D ++N+ LE EE I+G + K G +RG NVL+IS
Sbjct: 1 MLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTVVVRGENVLFISP 55
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISPTE 74
>gi|323309683|gb|EGA62891.1| Lsm6p [Saccharomyces cerevisiae FostersO]
Length = 119
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY 50
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+
Sbjct: 50 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEH 92
>gi|296806595|ref|XP_002844107.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238845409|gb|EEQ35071.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 88
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+Q + +VV+L G +Y+G L +D YMNI L QTEE+I+G+ G+ IR
Sbjct: 11 MLQSLINDDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGRNTGTLGEVLIR 67
>gi|401413718|ref|XP_003886306.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
gi|325120726|emb|CBZ56281.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
Length = 98
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTE-EYINGQLKNKYGDTFIRGNN 68
++ RP++V+L SG Y G+L+ DG+MN+ L+ + +G+ K + +IRGN
Sbjct: 7 LLRAAQNRPMMVELKSGETYSGLLANCDGFMNLHLKDSVCTSKDGERFWKLTECYIRGNM 66
Query: 69 VLYISTQK 76
V YI Q+
Sbjct: 67 VKYIRLQE 74
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQ--LKNKYGDTFIRGNNVLYISTQ 75
PV+V++ ++RG L D +MN+ L EE ++G +K G+ +RG+NV+YIS
Sbjct: 21 PVIVRIRGAREFRGTLEGYDLHMNLVLSDAEE-LDGDAIVKELMGEILVRGDNVVYISPT 79
Query: 76 KRR 78
++
Sbjct: 80 VKK 82
>gi|453081451|gb|EMF09500.1| small nuclear ribonucleo protein SmF [Mycosphaerella populorum
SO2202]
Length = 89
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEE-YINGQLKNKYGDTFIRGNN 68
+Q + + V+V++ G +Y G L +D YMNI L EE +G G IR NN
Sbjct: 11 MLQGLVNKDVIVRIKWGQEYSGRLVSVDSYMNIQLSGAEEKSPDGHDGGVLGQVLIRCNN 70
Query: 69 VLYISTQKRRG 79
VL+IS + ++
Sbjct: 71 VLWISAKDKQA 81
>gi|332796288|ref|YP_004457788.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694023|gb|AEE93490.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 87
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKY 59
++ E+ + I+ + V+VKL G +Y G L DG MN+ L E G + KY
Sbjct: 3 AKVENPLKNIKSAVNKIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTELREGTAEPVAKY 62
Query: 60 GDTFIRGNNVLYIS 73
G IRG+NVL+IS
Sbjct: 63 GRVLIRGSNVLFIS 76
>gi|401826734|ref|XP_003887460.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459978|gb|AFM98479.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 71
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
GR V VK+ ++RG +D Y+NI+LE NGQ Y FI+G+ + +I+
Sbjct: 11 GRAVKVKICDSSEFRGTSVAIDAYLNISLESVSYIQNGQEPRYYSSLFIKGSYIDHIA 68
>gi|448515600|ref|XP_003867370.1| Smx3 protein [Candida orthopsilosis Co 90-125]
gi|380351709|emb|CCG21932.1| Smx3 protein [Candida orthopsilosis]
Length = 130
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKNKYGDTFI 64
F++ + G+ VVV+L + +YRG L D Y+N+ L+ T E I + + G FI
Sbjct: 12 FMKSLIGKQVVVRLKWNKTEYRGQLISTDNYLNLQLDNTFEIIYDNEDKPREEAIGSIFI 71
Query: 65 RGNNVLYISTQK 76
R NNVL+I K
Sbjct: 72 RCNNVLFIREHK 83
>gi|119719646|ref|YP_920141.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524766|gb|ABL78138.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 100
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGDTFIRGNNVLYIST 74
G+ V VKL G +Y G L D MN+ L+ +E ++ + G FIRG+N+L++S
Sbjct: 12 GKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSNLLFVSL 71
Query: 75 QKRR 78
+ +
Sbjct: 72 EPEK 75
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 77 R 77
Sbjct: 75 E 75
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++NI L E +G++ KYG IRG+NVL IS
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKKYGKIVIRGDNVLAISP 72
>gi|126137233|ref|XP_001385140.1| hypothetical protein PICST_46368 [Scheffersomyces stipitis CBS
6054]
gi|126092362|gb|ABN67111.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 78
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNK--YGDTFIR 65
F++ + + V+V+L + +Y+G L +D YMN L+ T E I +G+ K + G+ FIR
Sbjct: 9 FLKTLINKQVIVRLKWNKTEYKGTLISIDNYMNFQLDNTYEVIYDGESKKQELIGEIFIR 68
Query: 66 GNNVLYI 72
NNVL+I
Sbjct: 69 CNNVLFI 75
>gi|15897150|ref|NP_341755.1| small nuclear riboprotein (snRNP-1) [Sulfolobus solfataricus P2]
gi|227828196|ref|YP_002829976.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830955|ref|YP_002832735.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579833|ref|YP_002838232.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229581507|ref|YP_002839906.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229585425|ref|YP_002843927.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238620387|ref|YP_002915213.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284174395|ref|ZP_06388364.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284998443|ref|YP_003420211.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|384433662|ref|YP_005643020.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|385773873|ref|YP_005646440.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus HVE10/4]
gi|385776515|ref|YP_005649083.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus REY15A]
gi|13813335|gb|AAK40545.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus
solfataricus P2]
gi|227457403|gb|ACP36090.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459992|gb|ACP38678.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228010548|gb|ACP46310.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012223|gb|ACP47984.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228020475|gb|ACP55882.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238381457|gb|ACR42545.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|261601816|gb|ACX91419.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284446339|gb|ADB87841.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323475263|gb|ADX85869.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus REY15A]
gi|323477988|gb|ADX83226.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGDTFIRGNNVLYIS 73
R V+VKL G +Y G L DG MN+ L E G + KYG IRG+N+L+IS
Sbjct: 18 RIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVLIRGSNILFIS 76
>gi|444727149|gb|ELW67654.1| hypothetical protein TREES_T100018439 [Tupaia chinensis]
Length = 106
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 51 INGQLKNKYGDTFIRGNNVLY 71
+NGQLK+KYGD FIRGNN LY
Sbjct: 1 MNGQLKSKYGDAFIRGNNALY 21
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + +++ G+ V++K + RG L D ++NI L+ EE ++ K G I
Sbjct: 3 ETAHKILEENLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTVVI 62
Query: 65 RGNNVLYIS 73
RG+ V+ IS
Sbjct: 63 RGDTVVLIS 71
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + ++ GR V++K V RG L D ++NI L+ TEE K G I
Sbjct: 3 ETAHKILEDSIGRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIRGDGSVRKLGTVVI 62
Query: 65 RGNNVLYIS 73
RG+ V+ IS
Sbjct: 63 RGDTVVLIS 71
>gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
gi|19068798|emb|CAD25266.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
Length = 81
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
+E+ QF+Q++ R V V L G Y G L D Y NI L++ E G+ K G+
Sbjct: 11 RENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTER-EGEASVKIGEVS 69
Query: 64 IRGNNVLYIS 73
IR NN+ I
Sbjct: 70 IRCNNIKRIC 79
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYIST 74
GRP++V+L +G + G L D YMN+ L++ + G + + +IRGNN+ Y+
Sbjct: 12 GRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYIRGNNIKYLRV 71
Query: 75 Q 75
Q
Sbjct: 72 Q 72
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ +YG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ +YG IRG+NVL IS +
Sbjct: 17 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 76
>gi|325968287|ref|YP_004244479.1| Sm ribonucleoprotein-like protein [Vulcanisaeta moutnovskia
768-28]
gi|323707490|gb|ADY00977.1| Like-Sm ribonucleoprotein core [Vulcanisaeta moutnovskia 768-28]
Length = 72
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E +++ +Q+ + ++VKL +G + RGVL D ++N+ L TEE IN + K G I
Sbjct: 2 EIVNEELQKNLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-INPKGGVKSGLMII 60
Query: 65 RGNNVLYIS 73
RG+ VL+IS
Sbjct: 61 RGDTVLFIS 69
>gi|374632978|ref|ZP_09705345.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524462|gb|EHP69339.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 86
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKY 59
++ E+ + ++ + V+VKL G +Y G L DG MN+ L E G + KY
Sbjct: 3 AKVENPLKSLRMATNKVVLVKLKDGSEYIGRLEQSDGTMNLVLRDCTELKEGTVDPIAKY 62
Query: 60 GDTFIRGNNVLYIS 73
G IRG+N+L+IS
Sbjct: 63 GRVLIRGSNILFIS 76
>gi|325968481|ref|YP_004244673.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
gi|323707684|gb|ADY01171.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
Length = 81
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN--- 57
M R + + +Q++ G+ V ++L + RGVL D MN+ +++ EE ++ + +N
Sbjct: 1 MERPQQPMKTLQKLVGKHVTIRLKNNKVLRGVLVNYDDCMNLIIDEGEE-LDQKGENVVV 59
Query: 58 KYGDTFIRGNNVLYISTQKRRG 79
KYG IRG VLYI++++ G
Sbjct: 60 KYGRLVIRGTQVLYITSEETMG 81
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + +++ G+ V++K + RG L D ++NI L+ EE ++ K G I
Sbjct: 3 ETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIVI 62
Query: 65 RGNNVLYIS 73
RG+ V+ IS
Sbjct: 63 RGDTVVLIS 71
>gi|303389684|ref|XP_003073074.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
gi|303302218|gb|ADM11714.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
Length = 71
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G+ V VK+ G ++RG + +D Y+NI+LE GQ Y FI+G+ + +I+
Sbjct: 11 GKAVKVKICDGSEFRGTSAAIDAYLNISLESVFYLQKGQEPRYYSSLFIKGSYIDHIA 68
>gi|353235226|emb|CCA67242.1| hypothetical protein PIIN_01075 [Piriformospora indica DSM 11827]
Length = 65
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 23 LVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
L G++YRG L D +MN+ L TEEY +G+ G+ FIR
Sbjct: 12 LKWGLEYRGFLVSTDAFMNLQLANTEEYQDGKSNGALGEVFIR 54
>gi|402470654|gb|EJW04787.1| hypothetical protein EDEG_01009 [Edhazardia aedis USNM 41457]
Length = 75
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-QLKNKYGDTFIRG 66
+ F + V++K G YRG C+DGY+NI+LE Y L FI+G
Sbjct: 5 NDFYSKFLNTNVIIKGSDGCIYRGKALCIDGYLNISLESVTVYEGSVCLPTVLNTAFIKG 64
Query: 67 NNVLYISTQK 76
+N+ YIS +
Sbjct: 65 SNIEYISISE 74
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL + RG+L D +MN+ L +EE + K G I
Sbjct: 3 ETAHKLLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGKKMGTIVI 62
Query: 65 RGNNVLYIS 73
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|19074364|ref|NP_585870.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|19069006|emb|CAD25474.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|449329505|gb|AGE95777.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon cuniculi]
Length = 71
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
GR V VK+ ++RG +D Y+NI+LE +GQ Y FI+G+ + +I+
Sbjct: 11 GRTVKVKICDSSEFRGTSVAIDAYLNISLESASYLQDGQEPRYYSSLFIKGSYIDHIA 68
>gi|401414085|ref|XP_003871541.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487758|emb|CBZ22999.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 80
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+S ++ + +PV L G +YRG L LDG ++ L Q + F+RG
Sbjct: 1 MSVSLESLLHQPVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPRQPAEALVFLRG 60
Query: 67 NNVLYI 72
N++YI
Sbjct: 61 ENIIYI 66
>gi|126460705|ref|YP_001056983.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250426|gb|ABO09517.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 86
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGDTFIRGN 67
+ + ++ + VV +L G+ +GVL+ D MN+ L+ E +G+ +YG +RG+
Sbjct: 15 KVLTKMLNKEVVARLKGGIAVKGVLTAYDSCMNLVLDDAAELDRSGEPVTRYGRIVVRGS 74
Query: 68 NVLYIST 74
V+Y+S
Sbjct: 75 QVIYVSA 81
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + +++ G V++K+ + RG L D ++NI L+ EE G K G I
Sbjct: 3 ETAHKMLEENIGNIVLIKIKDDITLRGKLRSYDQHLNIVLDDVEEIGEGGSTRKLGTVVI 62
Query: 65 RGNNVLYIS 73
RG+ V++IS
Sbjct: 63 RGDTVVFIS 71
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E +++ +Q+ + ++VKL +G + RGVL D ++N+ L TEE +N + K G I
Sbjct: 6 EIVNEELQKSLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-VNPKGGVKGGLMII 64
Query: 65 RGNNVLYIS 73
RG+ VL+IS
Sbjct: 65 RGDTVLFIS 73
>gi|300707099|ref|XP_002995772.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
gi|239604984|gb|EEQ82101.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
Length = 79
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ QF+ ++ + + + L G Y GVL D Y N L + +EY N + N+ G FI
Sbjct: 7 ENPKQFLNRLINKKIRIFLKWGQYYEGVLIEFDKYFNFVLSECKEYDN-EFINEMGSIFI 65
Query: 65 RGNNV 69
R NNV
Sbjct: 66 RCNNV 70
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ GRP++V+L +G + G L D YMN+ L E +G + + +IRGNN
Sbjct: 6 LLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNN 65
Query: 69 VLYISTQ 75
+ Y+ Q
Sbjct: 66 IKYLRIQ 72
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
++ + + + G+ V++KL G RG L D ++NI L+ EE ++ K G I
Sbjct: 8 DTAHKILAESLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEEELSDGSWRKLGTVLI 67
Query: 65 RGNNVLYIS 73
RG NV+ IS
Sbjct: 68 RGENVVVIS 76
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL + RG+L D +MN+ L +EE + K G I
Sbjct: 6 ETAHKLLAESLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGGGKKMGTIVI 65
Query: 65 RGNNVLYIS 73
RG+NV+ IS
Sbjct: 66 RGDNVILIS 74
>gi|330835700|ref|YP_004410428.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567839|gb|AEB95944.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 87
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKY 59
++ E+ + ++ + V+VKL G +Y G + DG MN+ L E G KY
Sbjct: 3 AKVENPLKSLRMATNKTVLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMKEGTADPIAKY 62
Query: 60 GDTFIRGNNVLYIS 73
G IRG+NVL++S
Sbjct: 63 GRVLIRGSNVLFVS 76
>gi|126466194|ref|YP_001041303.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126015017|gb|ABN70395.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 91
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYIS 73
V+VK+ G +Y G L+ +D MN+ L +EY +G+ +YG IRG+++++IS
Sbjct: 23 VLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKPIARYGKVLIRGSHIVFIS 78
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL + RG+L D +MN+ L +EE + K G I
Sbjct: 3 ETAHKVLAESLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGKKIGTIVI 62
Query: 65 RGNNVLYIS 73
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L + G++ KYG IRG+NVL IS
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNVVLADAQLIEGGEVTKKYGKIVIRGDNVLAISP 72
>gi|62464807|ref|YP_220371.1| putative snRNP [Sulfolobus neozealandicus]
gi|56562191|emb|CAH89328.1| putative snRNP [Sulfolobus neozealandicus]
Length = 98
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY--INGQLKNKYG 60
+K+ + ++ G+ V+V+L +G+DY G L ++ M+I L+ + I + KYG
Sbjct: 20 KKDDFLEVLKSAVGKVVLVRLRNGLDYVGTLELINNEMDIVLKDCVQLDKITLEPARKYG 79
Query: 61 DTFIRGNNVLYIS 73
+RGNNV +I
Sbjct: 80 RLVVRGNNVEFID 92
>gi|116753460|ref|YP_842578.1| like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gi|116664911|gb|ABK13938.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 74
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
G+L+ +D Y+N+ L +T E +NG+ G +RGNN++ IS +
Sbjct: 29 GILNSVDEYLNLHLLETVEIVNGERTRSLGSVILRGNNIILISPAE 74
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L + +G+ K YG IRG+NVL IS
Sbjct: 15 KEVLVILKRGAEFRGRLIGYDIHLNVVLADAQLIEDGEPKKNYGKIVIRGDNVLAISP 72
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V+VKL + RG L D +MN+ L + E N + K G I
Sbjct: 3 ETAHKLLAESVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNNNDEKKMGTIVI 62
Query: 65 RGNNVLYIS 73
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|15920417|ref|NP_376086.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306116|dbj|BAK54205.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 90
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGDTFIRGNNVLYIS 73
V+VKL G +Y G L DG MN+ L E G + KYG IRG+N+L+IS
Sbjct: 25 VLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVLIRGSNILFIS 81
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRR 78
G+L D YMN+ LE T E + G+ + G +RGNN++ I +++
Sbjct: 28 GILKSADDYMNLHLEDTFEMVEGERQRSLGSVVLRGNNIILIVPAEKQ 75
>gi|429964806|gb|ELA46804.1| hypothetical protein VCUG_01704 [Vavraia culicis 'floridensis']
Length = 81
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
KE+ QF++ G+ + + L VDY G+L D NI + E+++ ++ K
Sbjct: 6 KENPKQFLKARIGKRIRISLKWNVDYEGILDGFDDNFNIEVSSVSEFVDSKMVGKLKRMV 65
Query: 64 IRGNNV 69
IR NN+
Sbjct: 66 IRCNNI 71
>gi|396081585|gb|AFN83201.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon romaleae SJ-2008]
Length = 71
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
GR V VK+ ++RG +D Y+NI+LE +GQ Y FI+G+ + +I+
Sbjct: 11 GRVVKVKICDSSEFRGTSVAVDAYLNISLESVSYIQSGQEPRHYSSLFIKGSYIDHIA 68
>gi|305663921|ref|YP_003860209.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304378490|gb|ADM28329.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 94
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING--QLKNKYGDTFIRGNNVLYI 72
+ ++VK+ G +Y G L D MN+ LE E+ +G + KYG IRG+ +L+I
Sbjct: 22 KSILVKVKEGSEYIGRLVMTDATMNVVLEDATEFSDGGKDVVAKYGRILIRGSQILFI 79
>gi|344233338|gb|EGV65211.1| small nuclear ribonucleo protein SmF [Candida tenuis ATCC 10573]
gi|344233339|gb|EGV65212.1| hypothetical protein CANTEDRAFT_134081 [Candida tenuis ATCC
10573]
Length = 104
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEE--YING-QLKNKYGDTFIR 65
F++ + + V+V+L + +Y G L +D YMN L+ E Y++G + G+ FIR
Sbjct: 14 FLKTLLNKRVIVRLKWNKTEYTGNLVSVDNYMNFQLDDASETAYVDGKKTAETVGEVFIR 73
Query: 66 GNNVLYI 72
NNVL++
Sbjct: 74 CNNVLFV 80
>gi|347522706|ref|YP_004780276.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459588|gb|AEM38024.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 92
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL--KNKYG 60
R S + +++ R ++VKL G +Y G L DG MN+ L E + + K KYG
Sbjct: 5 RPASPLRVLREARNRVILVKLKDGSEYIGKLELTDGTMNLILSDCVEVDSETMEPKVKYG 64
Query: 61 DTFIRGNNVLYIST 74
IRG+ V+++S
Sbjct: 65 RVLIRGSMVVFVSV 78
>gi|294877652|ref|XP_002768059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239870256|gb|EER00777.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
F+ + G+ V+V+L + ++ +G L +D +MN+ L+ EE+ +G K GD IR
Sbjct: 31 FLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGALGDVLIR 87
>gi|386002990|ref|YP_005921289.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357211046|gb|AET65666.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 65
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G L+ +D Y+N+ L++T E ++G+ G +RGNN++ IS
Sbjct: 20 GTLNSVDDYLNLHLQETVEIVDGERARSLGSVILRGNNIILIS 62
>gi|307594229|ref|YP_003900546.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
gi|307549430|gb|ADN49495.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
Length = 81
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN--- 57
M R + + +Q++ G+ V ++L + RG+L D MN+ +++ EE ++ + +N
Sbjct: 1 MERPQQPMKTLQKLVGKHVTIRLKNNKVLRGILVNYDDCMNLIIDEGEE-LDQKGENVVV 59
Query: 58 KYGDTFIRGNNVLYISTQKRRG 79
KYG IRG +LYI++++ G
Sbjct: 60 KYGRLVIRGTQILYITSEEAVG 81
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL +S
Sbjct: 15 KDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIRGDNVLALSP 72
>gi|146303015|ref|YP_001190331.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145701265|gb|ABP94407.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 87
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGDTFIRGNNVLYIS 73
V+VKL G +Y G + DG MN+ L E G KYG IRG+N+L+IS
Sbjct: 20 VLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMREGTADPIAKYGRVLIRGSNILFIS 76
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L D +MN+ LE T E ++ KN+ G IRGN+V+ I +R
Sbjct: 29 GILRGFDQFMNLVLEDTVEEVSSTEKNELGMVVIRGNSVILIEPLER 75
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 29 YRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
Y G L D YMN+ L E ING+ K + +RG+N++++S +
Sbjct: 33 YSGTLEGYDIYMNVVLSNVSETINGENKGVFEKMLVRGDNIIFVSPSR 80
>gi|168067143|ref|XP_001785484.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662891|gb|EDQ49691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 77
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+KL +G + GVL D +MN+ L+ T E ING +N+ G IRGN+V+ I
Sbjct: 20 IKLNAGRNVVGVLRGFDQFMNLVLDNTVE-INGADRNEIGMVVIRGNSVVMIEA 72
>gi|432331010|ref|YP_007249153.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432137719|gb|AGB02646.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 78
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 25 SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G +G L +D Y+NI +++T EY++ Q G IRGNN+L I+
Sbjct: 27 EGRKLQGRLVAVDEYLNIHMDETIEYVDNQRGRSLGTVVIRGNNILTIA 75
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
G+ V++KL G RG L D +MN+ LE + E + N G +RG+NV+ IS
Sbjct: 15 GKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEEGKSNDLGTIVVRGDNVVIISPP 74
Query: 76 KR 77
+
Sbjct: 75 PK 76
>gi|162605820|ref|XP_001713425.1| small nuclear ribonucleoprotein F [Guillardia theta]
gi|13794357|gb|AAK39734.1|AF083031_91 small nuclear ribonucleoprotein F [Guillardia theta]
Length = 73
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V VKL G Y G+ D YMNI L+ E I Q G IR NN+L+IS
Sbjct: 15 VFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFIS 69
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNN 68
+ G+P++V+L SG RG L D +MN+ L++ EE+ +G+ + ++RG+N
Sbjct: 8 LLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSN 67
Query: 69 V 69
+
Sbjct: 68 I 68
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
R V+V L G ++RG L D ++N+ L + +G++ +YG +RG+NVL IS
Sbjct: 15 RDVLVLLKKGGEFRGKLIGYDIHLNVVLADADYIQDGEVVKRYGKIVVRGDNVLAISP 72
>gi|355571227|ref|ZP_09042479.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825615|gb|EHF09837.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 78
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
+G L +D Y+NI ++ T EY+N G IRGNN+L I Q
Sbjct: 32 QGRLVAVDEYLNIHMDDTTEYVNNVRGRTLGTVVIRGNNILSIQPQ 77
>gi|281340394|gb|EFB15978.1| hypothetical protein PANDA_007902 [Ailuropoda melanoleuca]
Length = 44
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNI 42
F+ + G+PV+VKL G++Y+G L +DGYMN+
Sbjct: 8 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNM 41
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
PV+VKL SG+ +GVL D ++NI L EE ++ + G T +RG++V+ I+
Sbjct: 20 PVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIR-RLGLTLVRGDSVVVIT 74
>gi|159129940|gb|EDP55054.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus
fumigatus A1163]
Length = 82
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 8 SQFIQQIH-GRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S IQ++ G ++++L G +Y+G L +D YMN+ L TEE+I+G+ G IR
Sbjct: 14 SFLIQRLRVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 73
>gi|440492813|gb|ELQ75351.1| Small nuclear ribonucleoprotein (snRNP) SMF [Trachipleistophora
hominis]
Length = 113
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
+ KE+ QF++ G+ + + L VDY G L D NI + E++ ++ K
Sbjct: 35 TTKENPKQFLKSRLGKRIRISLKWNVDYEGTLDGFDDNFNIEVSSVSEFVESRMVGKLKK 94
Query: 62 TFIRGNNV 69
IR NN+
Sbjct: 95 MVIRCNNI 102
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
+ V++KL RG L D +MN+ L+Q EE ++ N G +RG+NV+ IS
Sbjct: 16 KTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSDGDSNSLGSLVVRGDNVVMIS 72
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ----TEEYINGQLKNKYGDTFIR 65
++ HG P++V+L +G Y G L D +MNI L + ++ +G + + +IR
Sbjct: 6 LLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIR 65
Query: 66 GNNVLYI 72
GN + Y+
Sbjct: 66 GNTIKYL 72
>gi|71745372|ref|XP_827316.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei TREU927]
gi|9837170|gb|AAG00459.1|AF280391_1 Sm-F [Trypanosoma brucei]
gi|70831481|gb|EAN76986.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261331524|emb|CBH14518.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei
gambiense DAL972]
Length = 75
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ + G V VK G Y G L D YMN+ L E + + + GD +R N
Sbjct: 7 AAFLASLVGNTVHVKSKWGPVYVGTLVSCDPYMNLQLRDAVE--KAKQETELGDMLLRNN 64
Query: 68 NVLYI 72
NVLYI
Sbjct: 65 NVLYI 69
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
++ G+P++V+L +G Y GVL+ D +MN+ + + +G K + +IRGN+
Sbjct: 7 LLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNH 66
Query: 69 VLYI 72
V Y+
Sbjct: 67 VKYL 70
>gi|154151155|ref|YP_001404773.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153999707|gb|ABS56130.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 78
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 25 SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G +G L +D Y+NI +++T E++N + G IRGNN+L I+
Sbjct: 27 EGRKLQGRLVAVDEYLNIHMDETIEFVNNERGRSLGTVVIRGNNILTIA 75
>gi|146074876|ref|XP_001462629.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398009258|ref|XP_003857829.1| hypothetical protein, conserved [Leishmania donovani]
gi|134066707|emb|CAM65167.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322496031|emb|CBZ31103.1| hypothetical protein, conserved [Leishmania donovani]
Length = 80
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+S ++ + R V L G +YRG L LDG ++ L Q + F+RG
Sbjct: 1 MSVALESLLHRSVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPRQPAEPLVFLRG 60
Query: 67 NNVLYI 72
N++YI
Sbjct: 61 ENIIYI 66
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYI 72
+P++V+L SG + G L D YMN+ L+Q + +G+ K + ++RGN + YI
Sbjct: 11 QNKPLLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYLRGNTIKYI 69
>gi|330507733|ref|YP_004384161.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928541|gb|AEB68343.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 56
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
GVL+ +D Y+N+ L +T E I G+ G +RGNN++ IS
Sbjct: 10 EGVLNSVDEYLNLHLLETVELIGGEKTRSLGSVILRGNNIILIS 53
>gi|345564134|gb|EGX47115.1| hypothetical protein AOL_s00097g161 [Arthrobotrys oligospora ATCC
24927]
Length = 67
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 12 QQIHGRP---------VVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
Q I+ RP V+V+L G +Y+G L +D YMNI L TEE+I+ + G
Sbjct: 4 QPINPRPMLQGLINDFVIVRLKWGQTEYKGRLVSVDSYMNIQLSDTEEFIDNKSTGTLGQ 63
Query: 62 TFIR 65
IR
Sbjct: 64 VMIR 67
>gi|321468738|gb|EFX79721.1| hypothetical protein DAPPUDRAFT_304272 [Daphnia pulex]
Length = 153
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
SL +Q + GR VV+L + + +G++S +DG+MN++L+ N + + F++
Sbjct: 16 SLLCLLQALEGRVAVVELRNEMAVKGLISQVDGFMNVSLQNATVQGNDDQHYHFEEFFVK 75
Query: 66 GNNVLYI 72
N+ Y+
Sbjct: 76 ARNIRYV 82
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL G + RG L D ++N+ LE EE I G + G +RG+NV+ +S
Sbjct: 17 VLVKLKGGREIRGQLKSYDYHLNLVLENAEE-IRGTRTRQLGTIIVRGDNVILVS 70
>gi|389592337|ref|XP_003721536.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438067|emb|CBZ11819.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 80
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+S ++ + R V L G +YRG L LDG ++ L Q + F+RG
Sbjct: 1 MSVVLESLLHRSVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPKQPAEPLVFLRG 60
Query: 67 NNVLYI 72
N++YI
Sbjct: 61 ENIIYI 66
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ----TEEYINGQLKNKYGDTFI 64
++ HG P++V+L +G Y G L D +MNI L + ++ +G + + +I
Sbjct: 5 SLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYI 64
Query: 65 RGNNVLYI 72
RGN + Y+
Sbjct: 65 RGNTIKYL 72
>gi|71649985|ref|XP_813700.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|71651762|ref|XP_814552.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|70878609|gb|EAN91849.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
gi|70879534|gb|EAN92701.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
Length = 74
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ + G V VK G Y G L D YMN+ L T E + + + G+ +R N
Sbjct: 7 AAFLASLVGSTVHVKSKWGPVYVGTLVSCDPYMNLQLRDTVE--KAKEETELGEMLLRCN 64
Query: 68 NVLYI 72
NVLYI
Sbjct: 65 NVLYI 69
>gi|156060469|ref|XP_001596157.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980]
gi|154699781|gb|EDN99519.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 223
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 10 FIQQIHGRPVVVKLVSG--VDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
F+Q + V+++L G +Y+G L +D YMNI L EE+I+ ++ N
Sbjct: 156 FLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTN 205
>gi|42557773|emb|CAF28746.1| hypothetical protein [uncultured crenarchaeote]
Length = 89
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN--- 57
MS SQ +Q+ G+ V+VKL +G + D MNI + + E I Q N
Sbjct: 1 MSEDGIASQLLQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDN 60
Query: 58 -----------KYGDTFIRGNNVLYIS 73
+ GD IRG+NV+ I+
Sbjct: 61 SEKGKGQEQETQVGDALIRGDNVITIA 87
>gi|320164748|gb|EFW41647.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 77
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ R V++KL G+L D +MN+ L++T E ++ +++ G IRGN++
Sbjct: 9 LKKFLDRRVILKLNGNRKVSGILRGFDPFMNVVLDETFEEVSESERHEIGMVAIRGNSIN 68
Query: 71 YISTQKRRG 79
+ T R G
Sbjct: 69 MVETVDRSG 77
>gi|326936526|ref|XP_003214304.1| PREDICTED: small nuclear ribonucleoprotein G-like, partial
[Meleagris gallopavo]
Length = 60
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+VVKL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 1 LVVKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALER 59
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL + RG+L D +MN+ L +EE + K G IRG+NV+ IS
Sbjct: 17 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 71
>gi|401429920|ref|XP_003879442.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495692|emb|CBZ30998.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 76
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VK G Y G L D +MN+ L E+ + + G+ +R NN+
Sbjct: 9 FLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEMLLRNNNI 66
Query: 70 LYI 72
LYI
Sbjct: 67 LYI 69
>gi|268324345|emb|CBH37933.1| conserved hypothetical protein, containing LSM domain [uncultured
archaeon]
Length = 74
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
G+L+ +D Y+N+ L E NG K G +RGNNV+ I+ K
Sbjct: 28 GILTSVDDYLNLHLSSASEIQNGVRKRLLGSVILRGNNVVLINPMK 73
>gi|38344578|emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa Japonica Group]
Length = 582
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYR 30
S F++ I GRPVVVKL SGVDYR
Sbjct: 22 SDFLKSIRGRPVVVKLNSGVDYR 44
>gi|116309348|emb|CAH66431.1| OSIGBa0096P03.5 [Oryza sativa Indica Group]
Length = 413
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYR 30
S F++ I GRPVVVKL SGVDYR
Sbjct: 22 SDFLKSIRGRPVVVKLNSGVDYR 44
>gi|303388982|ref|XP_003072724.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
gi|303301866|gb|ADM11364.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
Length = 81
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
+E+ QF+ +I + V V L G Y GVL D Y NI L++ E +G+ + G+
Sbjct: 11 RENPKQFLHRIRDKNVSVTLKWGQVYEGVLVTSDNYFNILLDKCIEK-DGESEAMVGEVT 69
Query: 64 IRGNNVLYIS 73
IR NN+ I+
Sbjct: 70 IRCNNIKSIA 79
>gi|83286037|ref|XP_729986.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489340|gb|EAA21551.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 44
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 40 MNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
MNI L EE+I G+ K G+ F+R NNVLYI
Sbjct: 1 MNIRLTSAEEWIRGEYKGTLGEIFLRCNNVLYI 33
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
G L D YMN+ L+ EE NG+++ K G IRG+NV+ I+T+
Sbjct: 29 GTLVGYDEYMNMTLDDAEE--NGEVQRKIGKVIIRGSNVVRITTK 71
>gi|168049678|ref|XP_001777289.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671391|gb|EDQ57944.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
R + +KL +G + GVL D +MN+ L+ T E + G KN+ G IRGN+V+ I
Sbjct: 16 RKLNIKLNAGRNVVGVLRGFDQFMNLVLDNTVE-VQGAEKNEIGMVVIRGNSVVMIEA 72
>gi|154345205|ref|XP_001568544.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065881|emb|CAM43661.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 77
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VK G Y G L D +MN+ L E+ + + G+ +R NN+
Sbjct: 9 FLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVEH--AKQDTELGEMLLRNNNI 66
Query: 70 LYI 72
LYI
Sbjct: 67 LYI 69
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL + RG L D +MN+ L +EE + K G IRG+NV+ IS
Sbjct: 17 VLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 71
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL + RG+L D +MN+ L +EE + K G IRG+NV+ IS
Sbjct: 20 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 74
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL + RG+L D +MN+ L +EE + K G IRG+NV+ IS
Sbjct: 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 76
>gi|449295539|gb|EMC91560.1| hypothetical protein BAUCODRAFT_38674 [Baudoinia compniacensis
UAMH 10762]
Length = 91
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+Q + V ++L G +Y G L +D YMN+ L EE++NG + G IR
Sbjct: 21 MLQSLVNEEVTIRLKWGQTEYTGRLVSVDSYMNVQLSGAEEWVNGSSRGTLGQVLIR 77
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+ + G P++V+L +G G L D +MN+ L++ + +G+ ++ + ++RGNN
Sbjct: 6 LLTTVQGHPLLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYVRGNN 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|154331283|ref|XP_001561460.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058777|emb|CAM36447.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 80
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+S ++ + +PV L G +YRG L LDG ++ L + + F+RG
Sbjct: 1 MSVSLESLLHQPVCCHLAHGEEYRGQLEALDGSFDVVLSRCTRSRASPRQPAEPLVFVRG 60
Query: 67 NNVLYISTQKRRG 79
N++YI + G
Sbjct: 61 ENIIYIGFDESFG 73
>gi|427784695|gb|JAA57799.1| Putative small ribonucleoprotein particle protein smg
[Rhipicephalus pulchellus]
Length = 77
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRRG 79
G+L D +MN+ L++T E G K+ G +RGN+++ + +Q R G
Sbjct: 29 GILRGFDPFMNLVLDETVEETKGGEKHNIGMVVVRGNSIVLLESQDRIG 77
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ----TEEYINGQLKNKYGDTFIRGNNVLY 71
G V V+L SG +Y G L+ D +MN+ LE+ +E I+G + T IRG+NV+
Sbjct: 14 GERVAVRLKSGDEYVGELAGYDQHMNLVLEEVTIPADESISGDGEPIEDTTIIRGDNVVS 73
Query: 72 IS 73
I+
Sbjct: 74 IT 75
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ GRP++V+L +G + G L D Y N+ L E +G + + +IRGNN
Sbjct: 20 LLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYIRGNN 79
Query: 69 VLYISTQ 75
+ Y+ Q
Sbjct: 80 IKYLRIQ 86
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 SQFIQQIHGRPVVVKLV-SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+Q ++ + G+ + V++ D G L +D YMNI + EY NG+ G+ +RG
Sbjct: 4 NQMVRSLVGKTIRVEMKGEESDLVGRLESVDDYMNIYMSNAVEYKNGEKLRNLGNLVLRG 63
Query: 67 NNVLYI 72
NNV+ I
Sbjct: 64 NNVILI 69
>gi|389595241|ref|XP_003722843.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
gi|323364071|emb|CBZ13077.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
Length = 76
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VK G Y G L D +MN+ L E+ + + G+ +R NN+
Sbjct: 9 FLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEMLLRNNNI 66
Query: 70 LYI 72
LYI
Sbjct: 67 LYI 69
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
++ G+PV+V+L SG Y G L +D +MN+ L E G K + ++RGN
Sbjct: 7 LLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVRGNT 66
Query: 69 VLYI 72
V Y+
Sbjct: 67 VKYL 70
>gi|146101999|ref|XP_001469255.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|398023737|ref|XP_003865030.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
gi|134073624|emb|CAM72358.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|322503266|emb|CBZ38351.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
Length = 76
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VK G Y G L D +MN+ L E+ + + G+ +R NN+
Sbjct: 9 FLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEMLLRNNNI 66
Query: 70 LYI 72
LYI
Sbjct: 67 LYI 69
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF------ 63
++ G+P++V+L +G Y GVL+ D +MN+ + + L +K GD F
Sbjct: 7 LLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIR------DAVLTSKDGDRFWKLAEA 60
Query: 64 -IRGNNVLYI 72
IRGN++ Y+
Sbjct: 61 YIRGNHIKYL 70
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
L++F+ +++ V ++L +G G ++ +D MN L++ + + G+ IRG
Sbjct: 127 LARFLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALDSLAIRG 186
Query: 67 NNVLY 71
NNV Y
Sbjct: 187 NNVRY 191
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
++ G+PV+V+L SG Y G L +D +MN+ L E G K + ++RGN
Sbjct: 7 LLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVRGNT 66
Query: 69 VLYI 72
V Y+
Sbjct: 67 VKYL 70
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY---INGQLKNKYGDTFIR 65
+ + + G P+ V + + ++ G L D Y+N+ L+ +EY +G + GDT +
Sbjct: 9 ELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDLGDTLLN 68
Query: 66 GNNVLYIST 74
GNN+ + T
Sbjct: 69 GNNIAMVRT 77
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY---INGQLKNKYGDTFIR 65
+ + + G P+ V + + ++ G L D Y+N+ L+ +EY +G + GDT +
Sbjct: 9 ELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDLGDTLLN 68
Query: 66 GNNVLYIST 74
GNN+ + T
Sbjct: 69 GNNIAMVRT 77
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VK+ + +G+L+ D ++N+ LE+ EE + G++ G +RG+NV+ +S
Sbjct: 23 VLVKMKGNREVKGILTSYDQHLNLILEKAEE-LEGKVSRPLGLVLLRGDNVIAVS 76
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD-------T 62
++ G ++V+L +G Y GVL+ D +MN+ L + NK GD
Sbjct: 6 LLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKV------VCTNKDGDRFHELETC 59
Query: 63 FIRGNNVLYISTQK 76
FIRGN + Y+ Q+
Sbjct: 60 FIRGNTIKYMCVQE 73
>gi|340056303|emb|CCC50633.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma vivax Y486]
Length = 75
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ + G V VK G Y G L D +MN+ L T E + + + G+ +R N
Sbjct: 7 AAFLASLVGNTVHVKSKWGPVYVGTLVSCDSHMNLQLRDTVE--KAKQETELGEMLLRNN 64
Query: 68 NVLYI 72
NVLYI
Sbjct: 65 NVLYI 69
>gi|327311450|ref|YP_004338347.1| Like-Sm ribonucleoprotein, core [Thermoproteus uzoniensis 768-20]
gi|326947929|gb|AEA13035.1| Like-Sm ribonucleoprotein, core [Thermoproteus uzoniensis 768-20]
Length = 124
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLK--NKYGDTFIRGNNVLYIS 73
G+ VVV L +G +YRGVL +D +NI L IN K NKY + + ++YI+
Sbjct: 2 GKEVVVGLHNGEEYRGVLHAVDSQLNIIL------INAVTKSGNKYAKSLLMSRYIIYIN 55
Query: 74 TQKR 77
+ +R
Sbjct: 56 SIER 59
>gi|221220698|gb|ACM09010.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|221221936|gb|ACM09629.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +GVL D +MN+ ++ E G ++N G IRGN+++ + +R
Sbjct: 19 LKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNTIGMVVIRGNSIIMLEALER 75
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + +++ G+ V++K+ V RG L D ++NI L+ EE K G I
Sbjct: 4 ETTYKLLEENVGKIVLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVRGDGSSRKLGTLVI 63
Query: 65 RGNNVLYIS 73
RG+ V+ IS
Sbjct: 64 RGDTVVLIS 72
>gi|313217530|emb|CBY38609.1| unnamed protein product [Oikopleura dioica]
gi|313236587|emb|CBY19879.1| unnamed protein product [Oikopleura dioica]
Length = 76
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ R + VK+ G GVL D +MN+ ++ EY + G IRGN+VL
Sbjct: 9 LKKFMDRKMSVKVNGGRKVEGVLRGFDPFMNLVIDDAIEYRKDNSSHTMGMCVIRGNSVL 68
Query: 71 YISTQKR 77
I +R
Sbjct: 69 MIEAMER 75
>gi|448578387|ref|ZP_21643822.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|448592536|ref|ZP_21651643.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
gi|445726928|gb|ELZ78544.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|445731541|gb|ELZ83125.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
Length = 75
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYING--QLKNKYGDTFIR 65
+++ PV V L G Y GVL+ D +MN+ LE++ ++ + G +L+ T IR
Sbjct: 7 DVLEESLDEPVTVTLKDGSAYYGVLAGYDQHMNVVLEESLDDTMPGDIELEQVEDTTIIR 66
Query: 66 GNNVLYI 72
G+NV+ I
Sbjct: 67 GDNVVTI 73
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+ G+P++V+L +G + G L D +MN+ + + + NG+ K + +IRGN
Sbjct: 105 LLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYIRGNT 164
Query: 69 VLYI 72
+ YI
Sbjct: 165 IKYI 168
>gi|442754995|gb|JAA69657.1| Putative small nuclear ribonucleoprotein g [Ixodes ricinus]
Length = 77
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L D +MN+ L++T E G K+ G +RGN+++ + +Q R
Sbjct: 29 GILRGFDPFMNLVLDETVEETKGGEKHDIGMVVVRGNSIVLLESQDR 75
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
++ G+P++V+L +G Y GVL+ D +MN+ + + +G K + +IRGN+
Sbjct: 7 LLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNH 66
Query: 69 VLYI 72
+ Y+
Sbjct: 67 IKYL 70
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN--- 57
MS + +Q +Q+ G+ V+VKL RG + D MNI + E I Q N
Sbjct: 19 MSEEGIATQLLQESIGKNVLVKLKGRRSVRGKIKGFDKQMNIVITDATEIIEQQGNNNSE 78
Query: 58 --------KYGDTFIRGNNVLYIS 73
+ G+ IRG+NV+ I+
Sbjct: 79 KKEQEQESQVGEALIRGDNVITIA 102
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
SL +Q +HG V+L +G + +D +MN+ LE+ ++K D FI
Sbjct: 16 SLVILLQGLHGHATTVELRDESSAKGSVINVDAFMNVRLEKVTYTDRRGKESKLDDLFIN 75
Query: 66 GNNVLYI 72
G NV YI
Sbjct: 76 GRNVRYI 82
>gi|213513524|ref|NP_001134580.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|209734434|gb|ACI68086.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|303659717|gb|ADM15968.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +GVL D +MN+ ++ E G ++N G IRGN+++ + +R
Sbjct: 19 LKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNTIGLVVIRGNSIIMLEALER 75
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 29 YRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
Y G+L D YMN+ L+ E IN + K + +RG+N++++S
Sbjct: 35 YSGILEGYDIYMNLVLKNATETINNENKGTFSMMLLRGDNIIFVSPP 81
>gi|195144580|ref|XP_002013274.1| GL24044 [Drosophila persimilis]
gi|198452776|ref|XP_002137534.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
gi|194102217|gb|EDW24260.1| GL24044 [Drosophila persimilis]
gi|198132072|gb|EDY68092.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
Length = 76
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E + KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVTGILRGFDPFMNVVLDDTIEECKDKTKNNVGMVVIRGNSIVLVEALDR 75
>gi|196476795|gb|ACG76261.1| small nuclear ribonucleoprotein G [Amblyomma americanum]
Length = 77
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L D +MN+ L++T E G K+ G +RGN+++ + +Q R
Sbjct: 29 GILRGFDPFMNLVLDETVEEAKGGEKHNIGMVVVRGNSIVLLESQDR 75
>gi|291244885|ref|XP_002742321.1| PREDICTED: small nuclear ribonucleoprotein polypeptide G-like
[Saccoglossus kowalevskii]
Length = 77
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ + + +KL G GVL D +MN+ ++++ E I+G K++ G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRQVTGVLRGYDPFMNLVMDESVEEISGGEKHQIGMVVIRGNSII 68
Query: 71 YISTQKR 77
+ R
Sbjct: 69 MLEALDR 75
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNSIGMVVIRGNSIVMVEALDR 75
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+ G+P++V+L +GV + G L D +MN+ L + + +G+ K + FI+GN
Sbjct: 5 LLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFIKGNI 64
Query: 69 VLYI 72
+ Y
Sbjct: 65 IKYF 68
>gi|52548448|gb|AAU82297.1| small nuclear riboprotein-like protein [uncultured archaeon
GZfos13E1]
Length = 74
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
GVL+ +D Y+N+ L E NG+ + G +RGNNV+ I
Sbjct: 28 GVLTSVDDYLNLHLSGANELENGERRRLLGSVVVRGNNVVLI 69
>gi|357619057|gb|EHJ71789.1| small nuclear ribonucleoprotein G [Danaus plexippus]
Length = 76
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNV 69
+++ + + +KL +G GVL D +MN+ L+++ EE +GQ +N G IRGN++
Sbjct: 9 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNIGMVVIRGNSI 67
Query: 70 LYISTQKR 77
+ + + R
Sbjct: 68 IMLESLDR 75
>gi|241594929|ref|XP_002404416.1| small nuclear ribonucleoprotein G, putative [Ixodes scapularis]
gi|215500409|gb|EEC09903.1| small nuclear ribonucleoprotein G, putative [Ixodes scapularis]
Length = 76
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
LS F + + + ++L G+L D +MN+ L++T E G K+ G +RG
Sbjct: 4 LSFFFSRYMDKKLSLRLNGSRVITGILRGFDPFMNLVLDETVEETKGGEKHDIGMVVVRG 63
Query: 67 NNVLYISTQKR 77
N+++ + +Q R
Sbjct: 64 NSIVLLESQDR 74
>gi|194891288|ref|XP_001977464.1| GG18240 [Drosophila erecta]
gi|195479283|ref|XP_002100833.1| GE15956 [Drosophila yakuba]
gi|190649113|gb|EDV46391.1| GG18240 [Drosophila erecta]
gi|194188357|gb|EDX01941.1| GE15956 [Drosophila yakuba]
Length = 76
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDR 75
>gi|449267710|gb|EMC78623.1| Small nuclear ribonucleoprotein G, partial [Columba livia]
Length = 58
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
VKL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 1 VKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALER 57
>gi|18860007|ref|NP_573139.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|221372123|ref|NP_001138209.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|195351500|ref|XP_002042272.1| GM13382 [Drosophila sechellia]
gi|195567140|ref|XP_002107128.1| GD15738 [Drosophila simulans]
gi|29428065|sp|Q9VXE0.1|RUXG_DROME RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|7293253|gb|AAF48634.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|17944563|gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gi|194124115|gb|EDW46158.1| GM13382 [Drosophila sechellia]
gi|194204529|gb|EDX18105.1| GD15738 [Drosophila simulans]
gi|220901796|gb|ACL82939.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|220952224|gb|ACL88655.1| SmG-PA [synthetic construct]
Length = 76
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDR 75
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 11 IQQIHGRPVVVKLVSGVDY-RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q+I G + V++ ++ G L +D YMN+ L T E + G+ G +RGNN+
Sbjct: 7 VQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNI 66
Query: 70 LYIS 73
+ I+
Sbjct: 67 ILIT 70
>gi|194763519|ref|XP_001963880.1| GF21254 [Drosophila ananassae]
gi|190618805|gb|EDV34329.1| GF21254 [Drosophila ananassae]
Length = 101
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 42 MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDR 100
>gi|195447608|ref|XP_002071290.1| GK25208 [Drosophila willistoni]
gi|194167375|gb|EDW82276.1| GK25208 [Drosophila willistoni]
Length = 76
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVNGILRGFDPFMNVVLDDTIEECKDNTKNNIGMVVIRGNSIVMVEALDR 75
>gi|395841395|ref|XP_003793525.1| PREDICTED: uncharacterized protein LOC100954411 [Otolemur
garnettii]
Length = 186
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
++VKL G +G+L D +MN+ +++ E +N G IRGN+++ + +R
Sbjct: 127 IIVKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 185
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
M + L F+ I V+V+L +G RG L DG++N+ L+ E I+ + + G
Sbjct: 1 MRPHDCLRDFLDDI----VIVELKTGKTLRGRLVSFDGHLNLVLDDCVE-IDEDSEVRLG 55
Query: 61 DTFIRGNNVLYISTQK 76
IRG++V IS +
Sbjct: 56 RVLIRGDSVTLISPAE 71
>gi|292656841|ref|YP_003536738.1| snRNP-like protein [Haloferax volcanii DS2]
gi|433417270|ref|ZP_20404659.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|448290842|ref|ZP_21481987.1| snRNP-like protein [Haloferax volcanii DS2]
gi|448546215|ref|ZP_21626467.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|448548214|ref|ZP_21627558.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|448557401|ref|ZP_21632674.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|448565365|ref|ZP_21636232.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|448568277|ref|ZP_21637854.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|448583315|ref|ZP_21646671.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|448600783|ref|ZP_21656162.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|448606036|ref|ZP_21658615.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|448622918|ref|ZP_21669567.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
gi|291371013|gb|ADE03240.1| snRNP homolog [Haloferax volcanii DS2]
gi|432200109|gb|ELK56223.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|445577895|gb|ELY32315.1| snRNP-like protein [Haloferax volcanii DS2]
gi|445703058|gb|ELZ54994.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|445714296|gb|ELZ66060.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|445714916|gb|ELZ66674.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|445715109|gb|ELZ66865.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|445727227|gb|ELZ78841.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|445729544|gb|ELZ81139.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|445734796|gb|ELZ86352.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|445739453|gb|ELZ90960.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445753426|gb|EMA04843.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
Length = 76
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT--EEYING--QLKNKYGDTFIRGNNVLYI 72
PV V L G Y GVL+ D +MN+ LE+ E+ + G +L+ T IRG+NV+ I
Sbjct: 15 EPVTVLLKDGNAYFGVLAGYDQHMNVVLEEALDEDTVPGDIELEQVQDTTIIRGDNVVTI 74
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+++KL G G+L D +MN+ L+ T E KN G IRGN+++ + R
Sbjct: 17 MMLKLNGGRAVTGILRGFDPFMNVVLDDTIEECKDNTKNSIGMVVIRGNSIVMVEALDR 75
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L +G+ +YG IRG+NVL IS
Sbjct: 15 KDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQDGEEVKRYGKIVIRGDNVLAISP 72
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 11 IQQIHGRPVVVKLVSGVDY-RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q+I G + V++ ++ G L +D YMN+ L T E + G+ G +RGNN+
Sbjct: 7 VQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNI 66
Query: 70 LYIS 73
+ I+
Sbjct: 67 ILIT 70
>gi|395645347|ref|ZP_10433207.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395442087|gb|EJG06844.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 78
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 26 GVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G +G L +D ++N+ +E+T EY Q G IRGNN+L IS
Sbjct: 28 GRKLQGRLVAVDEHLNLHMEETIEYTGEQRGRSLGTVVIRGNNILTIS 75
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
++ G P++V+L SG Y G L D +MNI L E +G + D +IRGN
Sbjct: 6 LLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNT 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|124485152|ref|YP_001029768.1| hypothetical protein Mlab_0325 [Methanocorpusculum labreanum Z]
gi|124362693|gb|ABN06501.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 77
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 26 GVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G + G L +D Y+N+ LE+T E I + G IRGNN+L IS
Sbjct: 28 GCKFEGRLVAMDEYLNLHLEETVE-ITANGRRNIGTVVIRGNNILTIS 74
>gi|389860339|ref|YP_006362578.1| LSM family small nuclear ribonucleoprotein [Thermogladius
cellulolyticus 1633]
gi|388525242|gb|AFK50440.1| LSM family small nuclear ribonucleoprotein [Thermogladius
cellulolyticus 1633]
Length = 78
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIR 65
L I QI V+V++ G +Y G L +D MN+ L EE +G+ +YG IR
Sbjct: 2 LRSAINQI----VLVRVKDGNEYIGNLEMVDPTMNVVLSDCEETSADGKPIARYGKALIR 57
Query: 66 GNNVLYIST 74
G++++++S
Sbjct: 58 GSHIVFVSV 66
>gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
gi|19915270|gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 11 IQQIHGRPVVVKLVSGVDY-RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q+I G + V++ ++ G L +D YMN+ L T E + G+ G +RGNN+
Sbjct: 7 VQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNI 66
Query: 70 LYIS 73
+ I+
Sbjct: 67 ILIT 70
>gi|389848158|ref|YP_006350397.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|448618366|ref|ZP_21666603.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|388245464|gb|AFK20410.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|445746737|gb|ELZ98195.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
Length = 76
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT--EEYING--QLKNKYGDTFIRGNNVLYI 72
PV V L G Y GVL+ D +MN+ LE+ E+ + G +L+ T IRG+NV+ I
Sbjct: 15 EPVTVLLKDGNAYFGVLAGYDQHMNVVLEEALDEDSVPGDIELEQVQDTTIIRGDNVVTI 74
>gi|448431568|ref|ZP_21585157.1| Like-Sm ribonucleoprotein core [Halorubrum tebenquichense DSM
14210]
gi|445687641|gb|ELZ39920.1| Like-Sm ribonucleoprotein core [Halorubrum tebenquichense DSM
14210]
Length = 73
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALE---QTEEYINGQLKNKYG-----DTFIRGNN 68
PV V L G Y G+L D +MN+ +E ++ ++G L ++ T IRG+N
Sbjct: 8 EPVTVHLKDGTTYYGILGGYDQHMNVVIEPETDVDDRVDGDLDGEFAVAIEDTTIIRGDN 67
Query: 69 VLYI 72
V+ I
Sbjct: 68 VVTI 71
>gi|413947546|gb|AFW80195.1| hypothetical protein ZEAMMB73_084588 [Zea mays]
Length = 43
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 33 LSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
L+ +D YMN+ L TEEYI+GQ G+ IR
Sbjct: 11 LASVDSYMNLQLANTEEYIDGQFSGNLGEILIR 43
>gi|397780467|ref|YP_006544940.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
gi|396938969|emb|CCJ36224.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 25 SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G +G L +D ++N+ +++T EY Q G IRGNN+L IS
Sbjct: 27 DGRKLQGRLVAVDEHLNLHMDETTEYTGDQRGRTLGTVVIRGNNILTIS 75
>gi|378755698|gb|EHY65724.1| hypothetical protein NERG_01331 [Nematocida sp. 1 ERTm2]
Length = 65
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E +S+F+ PV VK G Y G L +D Y+N+ L+ +N +K G F+
Sbjct: 2 EQISEFMH----SPVSVKTHCGSIYEGTLLAIDQYLNVVLQNAT--VNADIKK--GFLFV 53
Query: 65 RGNNVLYIS 73
+G+N+L ++
Sbjct: 54 KGSNILLLT 62
>gi|429217215|ref|YP_007175205.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133744|gb|AFZ70756.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 90
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-QLKNKYGDTFIRGNNVLYIS 73
V V+L G ++ G+L D MN+ LE + E +G Q+ K G IRG+ + YIS
Sbjct: 22 VYVRLKDGSEFVGILKMTDSTMNLILEDSIEVKDGKQVVAKIGKILIRGSMIQYIS 77
>gi|321461226|gb|EFX72260.1| hypothetical protein DAPPUDRAFT_189031 [Daphnia pulex]
Length = 77
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G + G+L D +MN+ +++T E + KN G +RGN+++ + +R
Sbjct: 19 LKLNGGRNIVGILRGFDPFMNLVIDETVEEVKDGSKNNIGMVVVRGNSIIMLEALER 75
>gi|448500333|ref|ZP_21611712.1| Like-Sm ribonucleoprotein core [Halorubrum coriense DSM 10284]
gi|445696562|gb|ELZ48648.1| Like-Sm ribonucleoprotein core [Halorubrum coriense DSM 10284]
Length = 73
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTE---EYINGQLKNKYG-----DTFIRGNN 68
PV V L G Y GVL D +MN+ +E + + ++G L ++ T IRG+N
Sbjct: 8 EPVTVHLKDGTTYYGVLGGYDQHMNVVIEPEDGVGDRVDGDLDGEFAVAIEDTTIIRGDN 67
Query: 69 VLYI 72
V+ I
Sbjct: 68 VVTI 71
>gi|193713710|ref|XP_001949387.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Acyrthosiphon pisum]
Length = 79
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL D +MN+ L++T E I + N G IRG++VL I R
Sbjct: 29 GVLRGFDPFMNLVLDETVEKIKDGVVNSIGMVVIRGDSVLTIEALDR 75
>gi|114050793|ref|NP_001040405.1| small nuclear ribonucleoprotein G [Bombyx mori]
gi|95102770|gb|ABF51326.1| small nuclear ribonucleoprotein G [Bombyx mori]
Length = 76
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL +G GVL D +MN+ L+++ EE +GQ +N G IRGN+++ + + R
Sbjct: 19 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESLDR 75
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+ G+P++V+L +GV + G L D +MN+ L + + +G+ K + FI+GN
Sbjct: 6 LLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNI 65
Query: 69 VLYI 72
+ Y
Sbjct: 66 IKYF 69
>gi|307214549|gb|EFN89534.1| Probable small nuclear ribonucleoprotein G [Harpegnathos
saltator]
Length = 76
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL +G G+L D +MN+ +++T E KN G IRGN+V+ + R
Sbjct: 19 LKLNAGRHVTGILRGFDPFMNMVIDETVEECKDGTKNNIGMVVIRGNSVIMLEALDR 75
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF-------IRGNN 68
GRP++V+L +G Y G L+ D +MN+ L++ +K GD F +RGN
Sbjct: 670 GRPMLVELKNGETYNGTLASCDTWMNVHLKEV------ICTSKDGDRFWRMEECYVRGNT 723
Query: 69 VLYI 72
+ Y+
Sbjct: 724 IKYV 727
>gi|386875950|ref|ZP_10118098.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
gi|386806240|gb|EIJ65711.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
Length = 46
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 33 LSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+ +D YMN+ + EE +G+ YG +RGNNVL+I +
Sbjct: 1 MDNVDSYMNLIMTDAEELHDGKTIANYGRVIVRGNNVLFIKLENE 45
>gi|449270153|gb|EMC80868.1| Small nuclear ribonucleoprotein F, partial [Columba livia]
Length = 45
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 42 IALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
+ L TEEYI+G L G+ IR NNVLYI
Sbjct: 1 LKLANTEEYIDGALSGHLGEVLIRCNNVLYI 31
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD------- 61
++ G V V L +G +Y G L+ D +MN+ LE+ E + GD
Sbjct: 26 DVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEAERTATSETAPADGDEETSSQD 85
Query: 62 -TFIRGNNVLYIS 73
T IRG+NV+ I+
Sbjct: 86 TTIIRGDNVVSIN 98
>gi|47026939|gb|AAT08690.1| small nuclear ribonucleoprotein polypeptide G [Hyacinthus
orientalis]
Length = 96
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 11 IQQIHGRPVV-VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
++Q+HG + +KL + G L D +MN+ ++ T E +NG KN G IRGN+V
Sbjct: 25 LKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTME-VNGNDKNDIGMVVIRGNSV 83
Query: 70 LYIST 74
+ I
Sbjct: 84 VMIEA 88
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYI 72
G+P++V+L +GV + G L D +MN+ L + + +G+ K + FI+GN + Y
Sbjct: 11 QGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYF 69
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY---INGQLKNKYGDTFIR 65
+ + + G P+ V + + ++ G L D Y+N+ L+ +EY +G + GDT +
Sbjct: 9 ELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDLGDTLLN 68
Query: 66 GNNV 69
GNN+
Sbjct: 69 GNNI 72
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--------NGQ-----LKNKYGDTFIR 65
V VKL + G+L DG+MN+ L EE I NGQ K K F+R
Sbjct: 23 VFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQGVVNIAKRKMDMLFVR 82
Query: 66 GNNVLYISTQKR 77
G+ V+ +S R
Sbjct: 83 GDGVILVSPPAR 94
>gi|134109199|ref|XP_776714.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259394|gb|EAL22067.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 147
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYI 72
G+P++V+L +GV + G L D +MN+ L + + +G+ K + FI+GN + Y
Sbjct: 11 QGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYF 69
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ G P++V+L +G G L D YMNI L E + +G + + ++RGNN
Sbjct: 6 LLTAAQGHPMLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYVRGNN 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRG 66
S ++ G+P++V+L +G + G L D +MNI L + + + K + +IRG
Sbjct: 4 SSLLKAAQGKPMMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRFWKLKEVYIRG 63
Query: 67 NNVLYISTQ 75
+ + Y+ Q
Sbjct: 64 STIKYLQVQ 72
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD------- 61
++ G V V L +G +Y G L+ D +MN+ LE+ E + GD
Sbjct: 26 DVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATSETTPANGDEETSSQD 85
Query: 62 -TFIRGNNVLYIS 73
T IRG+NV+ I+
Sbjct: 86 TTIIRGDNVVSIN 98
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+ +S + G+ V+++L + +G L D +MN+ LE E+ + + K G +
Sbjct: 3 DEISTLMTNSKGKVVLLRLRNTRTVQGTLRDFDIHMNLTLEDAED-VTEEKHEKLGKILL 61
Query: 65 RGNNVLYIS 73
RG+N+L +S
Sbjct: 62 RGDNILAVS 70
>gi|358058113|dbj|GAA96092.1| hypothetical protein E5Q_02753 [Mixia osmundae IAM 14324]
Length = 123
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+Q G+P++V+L +G + G LS D +MN+ L++ + NG K + +++G+
Sbjct: 6 LLQAALGKPMLVELKNGETFNGHLSGADNFMNLTLKEVYQTSANGDQFWKLPECYLKGHM 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYV 69
>gi|66811318|ref|XP_639367.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74854860|sp|Q54RX0.1|RUXG_DICDI RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|60468000|gb|EAL66011.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 85
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+ ++ + + +KL G+L D +MNIAL+ T E ++ K + G IRGN++L
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSIL 70
Query: 71 YI 72
+
Sbjct: 71 LM 72
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
L + I QI V++KL G RG L D +MN+ L+ +EE G +RG
Sbjct: 10 LDESINQI----VLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTEGNSKSLGTIVVRG 65
Query: 67 NNVLYISTQK 76
+NV+ IS
Sbjct: 66 DNVVMISPPP 75
>gi|109458413|ref|XP_001063547.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
gi|392337649|ref|XP_003753311.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
Length = 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G RGVL D +MN+ +++ E N +N G IRGN+++ + +R
Sbjct: 19 LKLDGGRRVRGVLRGFDPFMNLVVDECVEMGNSGQQNNSGVVVIRGNSIVMLEALER 75
>gi|300123719|emb|CBK24991.2| unnamed protein product [Blastocystis hominis]
Length = 77
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
G+ V VKL GVL D MNI LE E +N K + G IRGN ++ + Q
Sbjct: 14 GKVVTVKLNGNRIVEGVLRGYDQMMNIVLEDVYEVVNENEKQEMGRVVIRGNGIIQMDCQ 73
>gi|410669462|ref|YP_006921833.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
gi|409168590|gb|AFV22465.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
Length = 56
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
G LS D YMN+ L T E NG+ G +RGNN++ +
Sbjct: 9 EGTLSSADDYMNLHLVDTVEIANGERLRSLGSVVLRGNNIILV 51
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L G+ +YG IRG+NVL IS
Sbjct: 15 KDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQEGEEVKRYGKIVIRGDNVLAISP 72
>gi|340505820|gb|EGR32114.1| small nuclear ribonucleoprotein, putative [Ichthyophthirius
multifiliis]
Length = 85
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
K+ +Q+ +G+ ++V L +GV+ D YMNI LE +E I N G
Sbjct: 11 KQGYGPDLQKYNGKRLLVYLNGKRRVQGVVKGHDNYMNIVLENAQELIGKDKVNNIGKAV 70
Query: 64 IRGNNVL 70
+RGN+++
Sbjct: 71 VRGNSII 77
>gi|330806057|ref|XP_003290991.1| hypothetical protein DICPUDRAFT_38323 [Dictyostelium purpureum]
gi|325078869|gb|EGC32498.1| hypothetical protein DICPUDRAFT_38323 [Dictyostelium purpureum]
Length = 98
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI 51
S+KES+ +Q+ G+ + VK G + +G+L D +NI L+QT+E+I
Sbjct: 8 SKKESILD-LQRFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTKEFI 56
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G ++RG L D ++N+ L + +G++ YG +RG+NVL IS
Sbjct: 15 KDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDGEVVKSYGKIVVRGDNVLAISP 72
>gi|291386619|ref|XP_002709854.1| PREDICTED: small nuclear ribonucleoprotein polypeptide G
[Oryctolagus cuniculus]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E N +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVIDECVEMANSGQQNNIGMVVIRGNSIIMLEALER 75
>gi|225710716|gb|ACO11204.1| Small nuclear ribonucleoprotein G [Caligus rogercresseyi]
Length = 79
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS ++ +++ + V +KL + + G+L D +MN+ LE+ E +N G
Sbjct: 1 MSSTKAHPPELKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNPVG 60
Query: 61 DTFIRGNNVLYISTQKR 77
IRGN+++ + + R
Sbjct: 61 TVVIRGNSIVMLEAKDR 77
>gi|118101457|ref|XP_001233287.1| PREDICTED: uncharacterized protein LOC771344 isoform 1 [Gallus
gallus]
gi|126303310|ref|XP_001372569.1| PREDICTED: small nuclear ribonucleoprotein G-like [Monodelphis
domestica]
gi|395507378|ref|XP_003758002.1| PREDICTED: small nuclear ribonucleoprotein G [Sarcophilus
harrisii]
gi|387018738|gb|AFJ51487.1| Sm protein G [Crotalus adamanteus]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALER 75
>gi|350636434|gb|EHA24794.1| hypothetical protein ASPNIDRAFT_183031 [Aspergillus niger ATCC
1015]
Length = 80
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 16 GRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQ 54
G ++++L G +Y+G L +D YMN+ L TEE+I+G+
Sbjct: 21 GTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGK 60
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V++KL + RG L D ++NI L+ EE K G I
Sbjct: 3 ETAHKILLEHLGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIKEDGSTRKLGTIVI 62
Query: 65 RGNNVLYISTQK 76
RG+ V+ IS K
Sbjct: 63 RGDTVILISPIK 74
>gi|448611893|ref|ZP_21662323.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
gi|445742654|gb|ELZ94148.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT--EEYING--QLKNKYGDTFIRGNNVLYI 72
PV V L G Y GVL+ D +MN+ LE+ E+ + G L+ T IRG+NV+ I
Sbjct: 15 EPVTVLLKDGNAYYGVLAGYDQHMNVVLEEALDEDAVPGDIDLEQVEDTTIIRGDNVVTI 74
>gi|357512225|ref|XP_003626401.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355501416|gb|AES82619.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
Length = 75
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQ-LKNKYGDTFI 64
F+ ++ G+PV+VKL + Y+ L LD MN+ L T+ + Q +K Y +FI
Sbjct: 11 PFLNKLTGKPVLVKLKWEMGYKSYLVSLDSCMNLLLANTKGLFDSQDMKIGYLSSFI 67
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E+ + + + G V++KL + RG L D ++NI L+ EE K G I
Sbjct: 3 ETAHKILLEHLGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIRENGSTRKLGTIVI 62
Query: 65 RGNNVLYISTQK 76
RG+ V+ IS K
Sbjct: 63 RGDTVILISPIK 74
>gi|268834043|ref|NP_001161373.1| small nuclear ribonucleoprotein polypeptide G isoform 1 [Danio
rerio]
gi|268834149|ref|NP_001004660.2| small nuclear ribonucleoprotein polypeptide G isoform 2 [Danio
rerio]
Length = 76
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ ++ T E G N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSIIMLEALER 75
>gi|51858986|gb|AAH81512.1| Zgc:103688 [Danio rerio]
gi|182890240|gb|AAI65520.1| Zgc:103688 protein [Danio rerio]
Length = 76
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ ++ T E G N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSIIMLEALER 75
>gi|284413736|ref|NP_001165120.1| small nuclear ribonucleoprotein polypeptide G [Xenopus (Silurana)
tropicalis]
gi|138519693|gb|AAI35835.1| LOC100125174 protein [Xenopus (Silurana) tropicalis]
Length = 76
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVIDECTEISGGGHQNTIGMVVIRGNSIIMLEALER 75
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+ +S + + V+++L + +G L D +MN+ LE E+ ++ + N G +
Sbjct: 6 DEISTLMTNSKDKVVLLRLRNNKTVQGTLKDFDIHMNLTLENAED-VSEEKPNPIGKVLL 64
Query: 65 RGNNVLYIS 73
RG+N+L IS
Sbjct: 65 RGDNILAIS 73
>gi|197127872|gb|ACH44370.1| putative small nuclear ribonucleoprotein polypeptide G
[Taeniopygia guttata]
Length = 76
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVIDECVEMAAGGQQNNIGMVVIRGNSIIMLEALER 75
>gi|225711834|gb|ACO11763.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|225714162|gb|ACO12927.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|290562395|gb|ADD38594.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
Length = 79
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS ++ +++ + V +KL + + G+L D +MN+ LE+ E +N G
Sbjct: 1 MSSTKAHPPELKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNPVG 60
Query: 61 DTFIRGNNVLYISTQKR 77
IRGN+++ + + R
Sbjct: 61 TIVIRGNSIVMLEAKDR 77
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYISTQK 76
V++KL G RG L D +MN+ LE +EE + G+ + G +RG+NV+ IS
Sbjct: 18 VLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVEGETRT-LGTIVVRGDNVVIISPPP 75
>gi|109048997|ref|XP_001112504.1| PREDICTED: small nuclear ribonucleoprotein G-like [Macaca
mulatta]
Length = 76
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ-TEEYINGQLKNKYGDTFIRG 66
S +++ + + +KL G +G+L D +MN+ +++ E I+GQ +N G IRG
Sbjct: 6 SPELKKFMDKKLSLKLNGGRHVQGILQGFDPFMNLVIDECVEMAISGQ-QNNIGMVVIRG 64
Query: 67 NNVLYISTQKR 77
NN++ + +R
Sbjct: 65 NNIIMLEALER 75
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNV 69
I+ + ++V+L +G Y G+L +DG+MN+ L +GQ + + ++RGNN+
Sbjct: 8 IRSANKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYLRGNNI 67
Query: 70 LYI 72
YI
Sbjct: 68 KYI 70
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ G P++V+L +G G L D YMNI L E + G + + ++RGNN
Sbjct: 6 LLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVRGNN 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ-TEEYINGQLKNKYGDTFIRGNN 68
++ G P++V+L +G G+L+ DG+MN+ + G K + F+RGNN
Sbjct: 7 LLRTAQGHPMLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFVRGNN 66
Query: 69 V 69
+
Sbjct: 67 L 67
>gi|452210905|ref|YP_007491019.1| snRNP Sm -like protein, Archaeal [Methanosarcina mazei Tuc01]
gi|452100807|gb|AGF97747.1| snRNP Sm -like protein, Archaeal [Methanosarcina mazei Tuc01]
Length = 56
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
G L +D YMN+ L T E + G+ G +RGNN++ I+
Sbjct: 9 EGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILIT 52
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ G P++V+L +G G L D YMNI L E + +G + + ++RGNN
Sbjct: 6 LLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVRGNN 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|448474549|ref|ZP_21602408.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
gi|445817856|gb|EMA67725.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
Length = 80
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQ---TEEYINGQLKNKYG-----DTFIRGNN 68
PV V L G Y G+L+ D +MN+ +E ++ ++ +L ++ T IRG+N
Sbjct: 15 EPVTVHLKDGTTYYGILAGYDQHMNVVIEPESGVDDRVDDELDGEFAVAIEDTTIIRGDN 74
Query: 69 VLYI 72
V+ I
Sbjct: 75 VVTI 78
>gi|387596163|gb|EIJ93785.1| hypothetical protein NEPG_01357 [Nematocida parisii ERTm1]
Length = 65
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E +S+FI PV V+ G +Y G L +D Y+NI L+ I+ +K G F+
Sbjct: 2 EQISEFID----CPVSVRTYCGSNYYGTLLAIDQYLNIVLQNAT--IDSDIKK--GFLFV 53
Query: 65 RGNNVLYIS 73
+G+N+L ++
Sbjct: 54 KGSNILLLT 62
>gi|327291504|ref|XP_003230461.1| PREDICTED: small nuclear ribonucleoprotein G-like, partial
[Anolis carolinensis]
Length = 65
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 8 LKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALER 64
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
+ +S + + V+++L + +GVL D +MN+ LE E+ ++ + + G +
Sbjct: 3 DEISTLMANSKDKVVLLRLRNNKTIQGVLQDFDIHMNLTLENAED-VSEEKPDPLGKVLL 61
Query: 65 RGNNVLYIS 73
RG+N+L IS
Sbjct: 62 RGDNILAIS 70
>gi|399576624|ref|ZP_10770379.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
gi|399238068|gb|EJN58997.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
Length = 77
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL-----KNKYGDTFIRGNNVLY 71
PV V+L G +Y G L+ D +MN+ LE++ + + L + T IRG+NV+
Sbjct: 15 EPVTVQLKDGAEYYGTLAGYDQHMNVVLEESLDVDDDALGELDVEAVEDTTIIRGDNVVT 74
Query: 72 I 72
I
Sbjct: 75 I 75
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKY---GDTFIRGNNVLYI 72
G V V+L SG +Y G L+ D +MN+ LE + G++ + T IRG+NV+ I
Sbjct: 14 GERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVTIPLEGEVDAETPAEDTTIIRGDNVVSI 73
Query: 73 S 73
+
Sbjct: 74 T 74
>gi|402861349|ref|XP_003895059.1| PREDICTED: small nuclear ribonucleoprotein G-like [Papio anubis]
Length = 76
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQ-TEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++ E I+GQ +N G IRGNN++ + +R
Sbjct: 19 LKLNGGRRVQGILQGFDPFMNLVIDECVEMAISGQ-QNNIGMVVIRGNNIIMLEALER 75
>gi|298675778|ref|YP_003727528.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298288766|gb|ADI74732.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 74
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
GVL +D Y+N+ L ++ E NG+ G +RGNN++ ++
Sbjct: 27 EGVLESVDDYLNLHLVESVEIANGERLRSLGSVVLRGNNIVLLAP 71
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYIS 73
G P++V+L +G Y G L+ D +MN+ L++ +G + + ++RGN + Y+
Sbjct: 12 GHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYVRGNTIKYVC 70
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIR 65
L + I QI V++KL G RG L D +MN+ L+ +EE + G K+ G +R
Sbjct: 10 LDESINQI----VLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPVEGNSKS-LGTIVVR 64
Query: 66 GNNVLYISTQK 76
G+NV+ IS
Sbjct: 65 GDNVVMISPPP 75
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQ----LKNKYGDTFI 64
+ I + G + V + S ++ G L D Y+N+ LE EY Q K K G T +
Sbjct: 26 ELIDKCIGSSIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQDGKKKKTKLGQTLL 85
Query: 65 RGNNVLYI 72
GNN+ +
Sbjct: 86 NGNNICML 93
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
VKL +G+L D +MNIAL+ T E ++ K + G IRGN+++ +
Sbjct: 21 VKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVLIRGNSIILM 72
>gi|440907817|gb|ELR57914.1| hypothetical protein M91_09610 [Bos grunniens mutus]
Length = 247
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 14 IHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
+H VKL G +G+L D +MN+ +++ E +N G IRGN+++ +
Sbjct: 183 LHCGKTGVKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLE 242
Query: 74 TQKR 77
+R
Sbjct: 243 ALER 246
>gi|156405713|ref|XP_001640876.1| predicted protein [Nematostella vectensis]
gi|156228012|gb|EDO48813.1| predicted protein [Nematostella vectensis]
Length = 77
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G GVL D +MN+ L+ E ++G K+ G IRGN+++ + R
Sbjct: 19 LKLNGGRHVSGVLRGYDPFMNLVLDDAVENVSGNEKHAIGMVVIRGNSIVTMEALDR 75
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNN 68
+ G P++V+L +G G L D YMN+ L E + G + + ++RGNN
Sbjct: 6 LLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVRGNN 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|426238536|ref|XP_004013207.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
Length = 76
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L LD +MN+ +++ E +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGLDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75
>gi|367000273|ref|XP_003684872.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
gi|357523169|emb|CCE62438.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
Length = 95
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG------DTF 63
F + + + V V+L + ++ +G L +D ++N+ L+ I+ K KY + F
Sbjct: 6 FFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDN----ISCNDKTKYPHLTSVRNIF 61
Query: 64 IRGNNVLYISTQK 76
IRG+NV Y+ QK
Sbjct: 62 IRGSNVRYVYLQK 74
>gi|288930748|ref|YP_003434808.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288892996|gb|ADC64533.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 74
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
G L +D YMN+ L EY +G+ GD +RGNN++ I
Sbjct: 28 GRLESVDDYMNLHLSNAYEYKDGEKIRVLGDIVLRGNNIVLI 69
>gi|126179510|ref|YP_001047475.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125862304|gb|ABN57493.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 78
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
+G L +D ++N+ +++T EY Q G IRGNN+L I+
Sbjct: 32 QGRLVAVDEHLNLHMDETTEYTGEQRGRTLGTVVIRGNNILTIA 75
>gi|345778417|ref|XP_003431727.1| PREDICTED: uncharacterized protein LOC100682645 [Canis lupus
familiaris]
Length = 181
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S+ L +F+ + + +KL G +G+L D +MN+ +++ E +N G
Sbjct: 109 SQPPKLKKFMD----KKLSLKLNDGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNIGM 164
Query: 62 TFIRGNNVLYISTQKR 77
IRGNN++ + +R
Sbjct: 165 VVIRGNNIIMLEGLER 180
>gi|169806361|ref|XP_001827925.1| hypothetical protein EBI_25835 [Enterocytozoon bieneusi H348]
gi|161778993|gb|EDQ31020.1| hypothetical protein EBI_25835 [Enterocytozoon bieneusi H348]
Length = 73
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV--LYIS 73
+ V+VK + +++ G+L +DGY+N+ LE + FIRG + +YIS
Sbjct: 15 QKVIVKYIDNIEFEGILRSIDGYLNVVLENVSVKFMKNHIDTLNHCFIRGIQIKHIYIS 73
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 QIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNNVLY 71
Q HG V+V+L +G Y G L D +MN+ L E +GQ K + +IRGN + Y
Sbjct: 11 QRHG--VLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKY 68
Query: 72 IS 73
IS
Sbjct: 69 IS 70
>gi|301097686|ref|XP_002897937.1| small nuclear ribonucleoprotein G [Phytophthora infestans T30-4]
gi|262106382|gb|EEY64434.1| small nuclear ribonucleoprotein G [Phytophthora infestans T30-4]
gi|348673260|gb|EGZ13079.1| hypothetical protein PHYSODRAFT_514215 [Phytophthora sojae]
Length = 64
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL D +MN+ L++T E ++ N+ G IRGN+++ +R
Sbjct: 17 GVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLER 63
>gi|352683101|ref|YP_004893625.1| U6 snRNA-associated Sm-like protein LSm6 [Thermoproteus tenax Kra
1]
gi|350275900|emb|CCC82547.1| U6 snRNA-associated Sm-like protein LSm6 [Thermoproteus tenax Kra
1]
Length = 140
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 5 ESLSQFIQQIH---GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
E+ +F+ +I+ G+ V+V L +G +YRGVL +D +N+ L T + NKY
Sbjct: 6 EANKRFVAEINSLLGKEVIVGLSNGDEYRGVLYAVDNQLNLILYDT----TTKSGNKYSK 61
Query: 62 TFIRGNNVLYIST 74
+ + ++YI++
Sbjct: 62 SILISRYIMYINS 74
>gi|62858991|ref|NP_001016243.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|89267482|emb|CAJ81542.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|189441581|gb|AAI67319.1| LOC548997 protein [Xenopus (Silurana) tropicalis]
Length = 121
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
SL +Q +HG V+L G ++ +D +MNI L + + + + D FI
Sbjct: 16 SLIILLQGLHGHVTTVELRDESSATGTITNVDAFMNIRLAKVTYRDRRERETELDDLFIT 75
Query: 66 GNNVLYI 72
G N+ Y+
Sbjct: 76 GRNIRYV 82
>gi|148698069|gb|EDL30016.1| mCG121012 [Mus musculus]
Length = 90
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 12 QQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLY 71
+ + R + +KL G +G+L D +MN+ +++ E +N G IRGN+++
Sbjct: 24 ESLWTRKLSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM 83
Query: 72 ISTQKR 77
+ +R
Sbjct: 84 LEALER 89
>gi|402590109|gb|EJW84040.1| hypothetical protein WUBG_05049 [Wuchereria bancrofti]
Length = 79
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
G+L D +MNI +E E + KN+ G IRGN+++ + ++R
Sbjct: 29 GILRGFDPFMNIVVEDAVENLKSGDKNEIGMVVIRGNSIVIMEPKER 75
>gi|344230315|gb|EGV62200.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 140
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNN 68
+ +P++V+L +G G+L+ D +MN+ L + + N ++ K + +IRG++
Sbjct: 6 LLNSAKSQPILVELKNGETLNGLLTNCDSWMNLTLSEVIQTSPNAEVFTKIPEIYIRGSH 65
Query: 69 VLYI 72
+ Y+
Sbjct: 66 IKYL 69
>gi|66804897|ref|XP_636181.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74852197|sp|Q54HF6.1|LSM7_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm7
gi|60464543|gb|EAL62681.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI 51
+KES+ +Q+ G+ + VK G + +G+L D +NI L+QT+E+I
Sbjct: 7 PKKESILD-LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFI 55
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75
G L+ D YMN+ L+ EE +G+ + K G IRG+NV+ I+ +
Sbjct: 29 GTLAGYDEYMNMTLDDAEE--SGETQRKLGTVVIRGSNVVRIAPK 71
>gi|430760997|ref|YP_007216854.1| SNARE associated golgi family protein [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010621|gb|AGA33373.1| SNARE associated golgi family protein [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 314
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 6 SLSQFIQQIHGR--PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN 52
S Q Q+ G PVVV + S ++RG L C+DG +N+ L++ E ++
Sbjct: 221 SAPQLAAQLAGDNPPVVVDVRSPKEFRGELGCIDGALNLPLDELESRLH 269
>gi|359479792|ref|XP_002271534.2| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis
vinifera]
Length = 489
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG--DTFIRGN 67
+ + + GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 402 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 461
Query: 68 NVLYI 72
V Y+
Sbjct: 462 VVRYV 466
>gi|324514246|gb|ADY45805.1| Small nuclear ribonucleoprotein G [Ascaris suum]
Length = 79
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL D +MNI +E E++ N G IRGN+++ + ++R
Sbjct: 29 GVLRGFDPFMNIVVEDAVEHLKNGESNTLGMVVIRGNSIVIMEPKER 75
>gi|326676382|ref|XP_003200562.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Danio
rerio]
Length = 120
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
+ SL +Q +HG+ V L RG + +D +MNI LE K+ D F
Sbjct: 14 ENSLVILLQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLENVLYRDRRGRKSSMDDLF 73
Query: 64 IRGNNVLYI 72
I G NV Y+
Sbjct: 74 ITGRNVRYV 82
>gi|19113214|ref|NP_596422.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe 972h-]
gi|6094213|sp|O74966.1|RUXG_SCHPO RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|3169092|emb|CAA19285.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe]
Length = 77
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYIST 74
R V V+L GVL D ++NI LE + EE ++G+ K K G IRGN+V+ I T
Sbjct: 15 RQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE-KVKIGSVAIRGNSVIMIET 72
>gi|410930990|ref|XP_003978880.1| PREDICTED: small nuclear ribonucleoprotein G-like [Takifugu
rubripes]
gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis]
Length = 76
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ +++T E G ++ G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVVDETLEMGPGGQQSSIGMVVIRGNSIIMLEALER 75
>gi|302348366|ref|YP_003816004.1| small nucleolar RNP protein Sm [Acidilobus saccharovorans 345-15]
gi|302328778|gb|ADL18973.1| Putative small nucleolar RNP protein Sm [Acidilobus
saccharovorans 345-15]
Length = 92
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-QLKNKYGDTFIRGNNVLYIS 73
VKL G +Y G L D MN+ L+ + E +G Q+ + G IRG+ V Y+S
Sbjct: 26 VKLKDGTEYVGQLLVTDSTMNLVLDNSVEVKDGKQIVARLGKILIRGSMVQYVS 79
>gi|261198058|ref|XP_002625431.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239595394|gb|EEQ77975.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239607755|gb|EEQ84742.1| predicted protein [Ajellomyces dermatitidis ER-3]
gi|327354601|gb|EGE83458.1| small nuclear ribonucleoprotein SmG [Ajellomyces dermatitidis
ATCC 18188]
Length = 78
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRRG 79
G+L D +MNI L++ E NG K + G IRGN+V+ + +R G
Sbjct: 28 GILRGYDVFMNIVLDEAVEEKNGGEKVRLGMVVIRGNSVVMLEALERIG 76
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
L +F+ +++ V ++L +G +G +S +D MN L+ + + G+ Y IRG
Sbjct: 3 LVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRG 62
Query: 67 NNVLY 71
NN+ Y
Sbjct: 63 NNIRY 67
>gi|284161893|ref|YP_003400516.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284011890|gb|ADB57843.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 75
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL +D YMN+ L E NG+ G +RGNN++ I R
Sbjct: 28 GVLEGVDDYMNLCLTNAMECKNGEKIRNLGTIVLRGNNIVIIQPLDR 74
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---------NGQ----LKNKYGDTFIR 65
V VKL + G+L DG+MN+ + EE I NGQ K K F+R
Sbjct: 23 VFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQGLQVAKRKMEMLFVR 82
Query: 66 GNNVLYISTQKR 77
G+ V+ +S R
Sbjct: 83 GDGVILVSPPAR 94
>gi|170576974|ref|XP_001893831.1| small nuclear ribonucleoprotein G [Brugia malayi]
gi|312077085|ref|XP_003141148.1| small nuclear ribonucleoprotein G [Loa loa]
gi|158599912|gb|EDP37330.1| small nuclear ribonucleoprotein G, putative [Brugia malayi]
gi|307763686|gb|EFO22920.1| small nuclear ribonucleoprotein G [Loa loa]
Length = 79
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
V +KL G+L D +MNI +E E + KN+ G IRGN+++ + ++R
Sbjct: 17 VDLKLNGNRSVSGILRGFDPFMNIVVEDAVENLKNGDKNEIGMVVIRGNSIVIMEPKER 75
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
L + I Q+ V++KL RG L D +MN+ L+ +EE G +RG
Sbjct: 6 LDESIDQV----VLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEIPAEGDSKSLGTIVVRG 61
Query: 67 NNVLYISTQKRR 78
+NV+ IS +
Sbjct: 62 DNVVMISPPPAQ 73
>gi|390331570|ref|XP_788177.3| PREDICTED: small nuclear ribonucleoprotein G-like
[Strongylocentrotus purpuratus]
Length = 77
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL D +MN+ +++ E I+ KN G +RGN+++ + R
Sbjct: 29 GVLRGFDPFMNLVIDEATEDISTTQKNDIGMVVVRGNSIILLEALDR 75
>gi|308321244|gb|ADO27774.1| small nuclear ribonucleoprotein g [Ictalurus furcatus]
Length = 76
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ ++ + E G +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNPIGMVVIRGNSIIMLEALER 75
>gi|356504912|ref|XP_003521238.1| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like
[Glycine max]
Length = 497
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG------DTF 63
+ + + GR V+V+L + + +G L +D Y+NI LE T +N + KY + F
Sbjct: 410 YFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENT-SVVN---QEKYPHMLSVRNCF 465
Query: 64 IRGNNVLYI 72
IRG+ V Y+
Sbjct: 466 IRGSVVRYV 474
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----------NGQLKNKYGDTFIRGNN 68
V VKL + G+L DG+MN+ L EE + K K+ F+RG+
Sbjct: 24 VFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTTNYAKRKWEMLFVRGDG 83
Query: 69 VLYISTQKR 77
V+ +S R
Sbjct: 84 VILVSPPSR 92
>gi|387593125|gb|EIJ88149.1| hypothetical protein NEQG_01593 [Nematocida parisii ERTm3]
Length = 65
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFI 64
E +S+FI PV V+ G +Y G L +D Y+NI L+ I+ +K G F+
Sbjct: 2 EQISEFID----CPVSVRTYCGSNYYGTLLAIDQYLNIVLQNAT--IDSGIKK--GFLFV 53
Query: 65 RGNNVLYIS 73
+G+N+L ++
Sbjct: 54 KGSNILLLT 62
>gi|384497931|gb|EIE88422.1| hypothetical protein RO3G_13133 [Rhizopus delemar RA 99-880]
Length = 76
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
GVL D +MNI L++T E ++ +N G IRGN++ + +R
Sbjct: 29 GVLRGYDPFMNIVLDETVEEVSPTERNNIGMVVIRGNSIAIMEALER 75
>gi|435851698|ref|YP_007313284.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433662328|gb|AGB49754.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 74
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 31 GVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
G+L+ D Y+N+ L T E NG+ G +RGNN++ I+ +
Sbjct: 28 GLLNSADDYLNLHLLDTVEISNGEKLRSLGSVVLRGNNIILITPAE 73
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
V +KL + + G+L D +MN+ L+ T+E + +N+ G +RGN++ + R
Sbjct: 17 VTLKLNANRNITGILRGYDQFMNLVLDHTQEVVTPTQRNEIGMVVVRGNSISMVECVDR 75
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNNVLYI 72
G P++V+L +G G L+ D +MN+ L E + G K + +IRGNN+ Y+
Sbjct: 11 QGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIRGNNIKYL 69
>gi|146300335|ref|YP_001194926.1| hypothetical protein Fjoh_2580 [Flavobacterium johnsoniae UW101]
gi|146154753|gb|ABQ05607.1| hypothetical protein Fjoh_2580 [Flavobacterium johnsoniae UW101]
Length = 455
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 25 SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNK--YGDTFIRG-----NNVLYISTQKR 77
+G DY V+ + N ++ T + GQLKNK Y +TFI G N V++I+ Q
Sbjct: 344 TGTDYSSVIISFTSHKNASIRVTAFFALGQLKNKVDYLETFILGLNDEVNRVVHITLQAL 403
Query: 78 RGV 80
GV
Sbjct: 404 EGV 406
>gi|448534499|ref|XP_003870814.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis Co
90-125]
gi|380355169|emb|CCG24686.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis]
Length = 86
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+G + D YMN+ +++ EE +NG+ K G ++G N+ IS+
Sbjct: 40 QGKIQGFDEYMNLVIDEAEEIVNGK-KTPLGKLLLKGENITLISS 83
>gi|301755276|ref|XP_002913498.1| PREDICTED: putative adenosylhomocysteinase 3-like [Ailuropoda
melanoleuca]
Length = 669
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 20 VVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI 51
+VK SG++Y+G L +DGY+++ L TEE++
Sbjct: 1 MVKPKSGMEYKGYLVSVDGYLSMQLANTEEFL 32
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIS 73
V+VKL G +G L D ++N+ALE + +G+ K +Y +RG+NVL+IS
Sbjct: 19 VLVKLKDGQTVKGRLKAYDLHLNVALENAK--FDGEEK-EYPLIVVRGDNVLFIS 70
>gi|426248212|ref|XP_004017858.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
Length = 76
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ + + +KL G +G+L D +MN+ +++ E +N +G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRLVQGILWGFDPFMNLVIDECVEMATSGQQNNFGMVVIRGNSII 68
Query: 71 YISTQKR 77
+ +R
Sbjct: 69 MLEALER 75
>gi|170582188|ref|XP_001896017.1| hypothetical protein Bm1_22805 [Brugia malayi]
gi|158596863|gb|EDP35133.1| hypothetical protein Bm1_22805 [Brugia malayi]
Length = 44
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 40 MNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
MN+ L EEYI+G+ G+ IR NNVL++
Sbjct: 1 MNLQLANAEEYIDGRHTGDVGEVLIRCNNVLWV 33
>gi|255567664|ref|XP_002524811.1| Speckle-type POZ protein, putative [Ricinus communis]
gi|223535995|gb|EEF37654.1| Speckle-type POZ protein, putative [Ricinus communis]
Length = 500
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG--DTFIRGN 67
+ + + GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 413 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 472
Query: 68 NVLYI 72
V Y+
Sbjct: 473 VVRYV 477
>gi|157119614|ref|XP_001659450.1| Sm protein G, putative [Aedes aegypti]
gi|108875262|gb|EAT39487.1| AAEL008719-PA [Aedes aegypti]
Length = 76
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G G+L D +MN+ L+++ E +N G IRGN+++ + R
Sbjct: 19 LKLNGGRVVSGILRGFDPFMNVVLDESIEECKDSTRNNIGMVVIRGNSIIMVEALDR 75
>gi|293345587|ref|XP_002726075.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
Length = 76
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+G+L D +MN+ +++ E + +N G IRGN+++ + T +R
Sbjct: 28 QGILRGFDPFMNLVIDECVEMVTSGQQNIIGTVVIRGNSIIMLETLER 75
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLK 56
MS KE I+ V++KL + +G L D + N+ L + EEYI N ++
Sbjct: 1 MSTKEEPLDLIRFHLDEFVLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVE 60
Query: 57 NKYGD-TFIRGNNVLYIS 73
K + F+RG++V+ IS
Sbjct: 61 TKKTEMVFVRGDSVILIS 78
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----------NGQ-----LKNKYGDTF 63
V VKL + GVL DG+MN+ L EE I NGQ K K F
Sbjct: 23 VFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQNTVNIAKRKIDMLF 82
Query: 64 IRGNNVLYISTQKR 77
+RG+ V+ +S R
Sbjct: 83 VRGDGVILVSPPLR 96
>gi|319401867|ref|NP_001187842.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
gi|308324118|gb|ADO29194.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
Length = 76
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 21 VKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77
+KL G +G+L D +MN+ ++ + E G +N G IRGN+++ + +R
Sbjct: 19 LKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNSIGMVVIRGNSIIMLEALER 75
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,165,243,558
Number of Sequences: 23463169
Number of extensions: 39604035
Number of successful extensions: 102159
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 101054
Number of HSP's gapped (non-prelim): 1187
length of query: 80
length of database: 8,064,228,071
effective HSP length: 51
effective length of query: 29
effective length of database: 6,867,606,452
effective search space: 199160587108
effective search space used: 199160587108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)