BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10835
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ V+V+L SGVDYRG+LSCLDGYMNIALEQTEE++NG + N+YGD FIR
Sbjct: 27 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 86
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 87 GNNVLYISAAE 97
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F + GRPVVVKL +GV+YRG+L +DG MNI +EQTEEY+NGQLK KYGD F+RGNNV
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 70 LYISTQKRR 78
LYIS Q R+
Sbjct: 80 LYISAQPRK 88
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 59/69 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S ++F+ ++ G+ V+++L SGVDY+G+LSCLDGYMN+ALE+TEEY+NG+ N YGD FIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 66 GNNVLYIST 74
GNNVLY+S
Sbjct: 64 GNNVLYVSA 72
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
++ S + F++ + G+ V V+L SG+DYRGVLSCLDGYMNIALEQT EY++G KN YGD
Sbjct: 10 AKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGD 69
Query: 62 TFIRGNNVLYISTQKR 77
FIRGNNV+YI+ ++
Sbjct: 70 AFIRGNNVMYITALEK 85
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY++G+L+ YGD
Sbjct: 7 SEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGD 66
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNVLYIS
Sbjct: 67 AFVRGNNVLYISAD 80
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV YRG L +DGYMNIALE++EE+++G+L+ YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGN 72
Query: 68 NVLYISTQ 75
NVLYIS Q
Sbjct: 73 NVLYISAQ 80
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE++EE+++G+LK YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGN 72
Query: 68 NVLYISTQ 75
NVLYIS Q
Sbjct: 73 NVLYISAQ 80
>sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=LSM6 PE=3 SV=2
Length = 95
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S + F++ + G+ VVV+L+SGVDYRG+LSCLDGYMNIA+EQTEE +NG++ N+YGD FIR
Sbjct: 23 SPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIR 82
Query: 66 GNNVLYISTQK 76
GNNVLYIS +
Sbjct: 83 GNNVLYISADE 93
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEEY+NG + YGD F+RGN
Sbjct: 15 SGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALEQ++E+++G+L+ YGD FIRGN
Sbjct: 12 SAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGN 71
Query: 68 NVLYIST 74
NVLYI+
Sbjct: 72 NVLYIAA 78
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S + S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+TEE+ING + YGD
Sbjct: 9 SEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGD 68
Query: 62 TFIRGNNVLYISTQ 75
F+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYISAD 82
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V VKL SGV Y+G L +DGYMNIALE+T+E++NG+L+ YGD F+RGN
Sbjct: 13 SAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGN 72
Query: 68 NVLYISTQ 75
NVLYIS
Sbjct: 73 NVLYISAD 80
>sp|P0CR24|LSM6_CRYNJ U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=LSM6 PE=3 SV=1
Length = 88
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S+F++ I G+ V V++ SGVDY G+L+CLDGYMN+ALEQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 66 GNNVLYIST 74
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>sp|P0CR25|LSM6_CRYNB U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=LSM6 PE=3 SV=1
Length = 88
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S S+F++ I G+ V V++ SGVDY G+L+CLDGYMN+ALEQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 66 GNNVLYIST 74
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ +I G V VKL SGV Y+G L +DGYMNIALE+ EE++ GQ K YGD F+RGN
Sbjct: 15 TSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGN 74
Query: 68 NVLYIST 74
NV+YI+
Sbjct: 75 NVMYIAA 81
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 NVLYISTQK 76
NV+YIS +
Sbjct: 75 NVMYISADE 83
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SG+ Y+G L +DGYMNIALE+ +E G++ +GD F+RGN
Sbjct: 20 SGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVRGN 79
Query: 68 NVLYISTQ 75
NV YIS
Sbjct: 80 NVTYISAD 87
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGD 61
S S F+ +I G V V+L +GV+Y G L +DGYMNI L++T+E++ G YGD
Sbjct: 12 SENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGD 71
Query: 62 TFIRGNNVLYIS 73
FIRGNNVLYIS
Sbjct: 72 VFIRGNNVLYIS 83
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 1 MSRKESL-----SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQL 55
MS ESL S+F+ I G V VKL +GV+Y+G L +DGYMN+ALE +E I+ ++
Sbjct: 1 MSEAESLDRIDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKV 60
Query: 56 KNKYGDTFIRGNNVLYIS 73
YGD F+RGNNVLYIS
Sbjct: 61 TKHYGDVFLRGNNVLYIS 78
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ I G V+VKL + + ++G L +DGYMNIALE+ EE+++G+ K +GD F+RGN
Sbjct: 15 SSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGN 74
Query: 68 NVLYISTQ 75
NV+YIS
Sbjct: 75 NVMYISAD 82
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3
SV=1
Length = 86
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2
SV=1
Length = 86
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1
SV=1
Length = 86
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3
SV=2
Length = 86
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS + F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
Query: 61 DTFIRGNNVLYI 72
+ IR NNVLYI
Sbjct: 61 EVLIRCNNVLYI 72
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ V+VKL G++Y+G L+ +D YMN+ L TEEYI+GQL G+ IR NNV
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNV 70
Query: 70 LYI 72
LY+
Sbjct: 71 LYV 73
>sp|Q6FYB6|LSM6_CANGA U6 snRNA-associated Sm-like protein LSm6 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=LSM6 PE=3 SV=2
Length = 79
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---NGQLKN 57
M+ + +QF+ I G+PV VKL SG+ Y GVL +DG+MN+AL +T E+ N L
Sbjct: 1 MAEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNLLK 60
Query: 58 KYG-DTFIRGNNVLYIS 73
KY D F+RG V+YIS
Sbjct: 61 KYASDVFLRGTQVMYIS 77
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--NGQLKNKY-GDTFI 64
+QF+ I G+PV VKL SG+ Y+G L +DG+MN+AL T E+ N + +Y D F+
Sbjct: 13 TQFLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNAHMLKRYENDVFL 72
Query: 65 RGNNVLYIS 73
RG V+YIS
Sbjct: 73 RGTQVMYIS 81
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila melanogaster
GN=SmF PE=3 SV=2
Length = 88
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE I G + G+ IR NNV
Sbjct: 12 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum
GN=snrpf PE=3 SV=1
Length = 91
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 1 MSRKESLSQ--FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
MS+ E+L+ F+ + G+ + V+L G++YRG+L+ +D YMN+ L TEE+I+G K
Sbjct: 1 MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG 60
Query: 58 KYGDTFIRGNNVLYI 72
G+ IR NNVL++
Sbjct: 61 PLGEVLIRCNNVLFV 75
>sp|Q6CPS7|LSM6_KLULA U6 snRNA-associated Sm-like protein LSm6 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=LSM6 PE=3 SV=1
Length = 80
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----NGQLKN 57
S+ + F++ I G+PV VKL SG+ Y+G L +DG+MN+ + Q E+ NG L
Sbjct: 3 SKATASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHK 62
Query: 58 KYGDTFIRGNNVLYISTQ 75
+ F+RG+ VLYIS +
Sbjct: 63 YPSEVFLRGSQVLYISEK 80
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+GVL +D YMN+ L EEYI+G + G+ IR NNV
Sbjct: 12 FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYV 74
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=LSM6 PE=3 SV=1
Length = 85
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQ---LKNKY-GD 61
S S F+ I G+PV VKL SG+ Y+G L +DG+MN+AL EY + + ++Y D
Sbjct: 12 SSSTFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESD 71
Query: 62 TFIRGNNVLYIS 73
F+RG V+YIS
Sbjct: 72 VFLRGTQVMYIS 83
>sp|O59734|RUXF_SCHPO Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1
Length = 78
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+PV+V+L G +Y+G L +D YMN+ L EE ++G G+ IR NNV
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
Query: 70 LYI 72
L++
Sbjct: 71 LWV 73
>sp|Q06406|LSM6_YEAST U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM6 PE=1
SV=2
Length = 86
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 73 LRGTQVMYISEQK 85
>sp|A6ZYX7|LSM6_YEAS7 U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain YJM789) GN=LSM6 PE=3 SV=1
Length = 86
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING----QLKNKYGDTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL E+ L D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 73 LRGTQVMYISEQK 85
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N++YIS
Sbjct: 25 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 81
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE G++ +K+G IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRGDNVVYVSP 72
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q + V ++L G +Y G L +D YMNI L T+EYIN + G IR NN
Sbjct: 11 FLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNN 70
Query: 69 VLYI 72
VLYI
Sbjct: 71 VLYI 74
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
PV+V+L G ++RG L D +MN+ L EE NG++ K G IRG+ V+++S
Sbjct: 16 PVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 19 VVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
V+V+L ++RGVL D +MN+ L++ EE +G++ K G IRG+NV+Y+S
Sbjct: 17 VIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRGDNVVYVSP 72
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE +G++ +K+ IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRGDNVVYVSP 72
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L ++RG L D +MN+ L+ EE G++ +K+ IRG+NV+Y+S
Sbjct: 16 PVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVSP 72
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1
Length = 86
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVS----------GVDYRGVLSCLDGYMNIALEQTEEY 50
MS +S +Q ++ +P + LV+ +YRG L D Y N+ L + EE+
Sbjct: 1 MSESSDISA-MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEF 59
Query: 51 INGQLKNKYGDTFIRGNNVLYI 72
+ G G+ FIR NNVLYI
Sbjct: 60 VAGVSHGTLGEIFIRCNNVLYI 81
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
R V++ + +Y G+L D YMNI L+ E ING+ K Y +RG+NV+++S K
Sbjct: 20 RNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVIFVSPSK 79
Query: 77 RRG 79
G
Sbjct: 80 GDG 82
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 18 PVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
PV+V+L G ++RG L D +MN+ L+ EE + K G +RG+ V+Y+S
Sbjct: 16 PVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTIIVRGDTVVYVSP 72
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
R V++ + +Y G+L D YMN+ L+ E ING+ K + +RG+NV+++S K
Sbjct: 20 RNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVIFVSPSK 79
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74
+ V+V L G +YRG L D ++N+ L + NG+ K YG IRG+NVL IS
Sbjct: 15 KEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIENGEPKKSYGKIVIRGDNVLAISP 72
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76
+ V+V L G ++RG L D ++N+ L E +G++ KYG IRG+NVL IS +
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIVIRGDNVLAISPTE 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,236,837
Number of Sequences: 539616
Number of extensions: 971526
Number of successful extensions: 3241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3155
Number of HSP's gapped (non-prelim): 103
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)