Query psy10835
Match_columns 80
No_of_seqs 102 out of 1082
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:41:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_F Small nuclear ribonucle 100.0 2.7E-29 9.1E-34 150.6 5.7 78 1-78 1-78 (86)
2 4emk_B U6 snRNA-associated SM- 99.9 4.1E-28 1.4E-32 141.9 3.1 73 5-77 3-75 (75)
3 1d3b_A Protein (small nuclear 99.9 2.4E-27 8.3E-32 138.8 4.2 73 4-76 3-75 (75)
4 1i4k_A Putative snRNP SM-like 99.9 3.6E-27 1.2E-31 138.2 4.7 74 5-78 3-76 (77)
5 1h64_1 SnRNP SM-like protein; 99.9 3.9E-27 1.3E-31 137.5 4.6 72 5-76 3-74 (75)
6 1th7_A SnRNP-2, small nuclear 99.9 2.9E-27 1E-31 140.0 3.5 78 1-78 3-81 (81)
7 3s6n_G Small nuclear ribonucle 99.9 3E-27 1E-31 138.6 3.5 75 1-77 1-75 (76)
8 1mgq_A SM-like protein; LSM, R 99.9 1.3E-26 4.6E-31 137.8 4.6 73 2-74 11-83 (83)
9 1ljo_A Archaeal SM-like protei 99.9 2.2E-26 7.6E-31 135.0 5.2 72 5-76 4-76 (77)
10 1i8f_A Putative snRNP SM-like 99.9 1.6E-26 5.3E-31 136.9 3.9 72 4-76 9-80 (81)
11 1n9r_A SMF, small nuclear ribo 99.9 1.6E-26 5.4E-31 140.4 3.5 74 3-76 18-92 (93)
12 4emk_A U6 snRNA-associated SM- 99.9 5.2E-26 1.8E-30 138.5 4.3 75 2-76 16-91 (94)
13 4emh_A Probable U6 snRNA-assoc 99.9 5.8E-26 2E-30 140.6 3.2 75 3-77 13-88 (105)
14 1b34_A Protein (small nuclear 99.9 2.8E-25 9.4E-30 140.0 3.4 72 6-77 2-73 (119)
15 2y9a_D Small nuclear ribonucle 99.9 3.7E-25 1.3E-29 140.8 3.0 74 4-77 3-76 (126)
16 3bw1_A SMX4 protein, U6 snRNA- 99.9 8.1E-25 2.8E-29 133.3 4.2 74 5-78 9-89 (96)
17 1d3b_B Protein (small nuclear 99.9 3.4E-25 1.1E-29 133.4 2.0 74 5-78 3-86 (91)
18 4emg_A Probable U6 snRNA-assoc 99.9 7.9E-25 2.7E-29 132.8 3.5 73 3-75 6-91 (93)
19 2fwk_A U6 snRNA-associated SM- 99.9 2.7E-24 9.1E-29 135.7 4.3 74 4-77 26-114 (121)
20 3s6n_E Small nuclear ribonucle 99.9 1.9E-24 6.5E-29 131.0 2.8 73 4-76 14-91 (92)
21 4emk_C U6 snRNA-associated SM- 99.9 2.1E-23 7.3E-28 130.5 3.1 73 5-77 22-101 (113)
22 1b34_B Protein (small nuclear 99.9 9.9E-23 3.4E-27 128.0 4.4 75 4-78 25-115 (118)
23 3pgw_B SM B; protein-RNA compl 99.9 2.8E-22 9.7E-27 137.9 4.6 71 6-76 4-84 (231)
24 1m5q_A SMAP3, small nuclear ri 99.8 2E-21 6.9E-26 124.1 4.4 66 8-77 2-67 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 5.9E-11 2E-15 70.8 4.9 67 4-77 6-73 (86)
26 1kq1_A HFQ, HOST factor for Q 97.6 7E-05 2.4E-09 43.6 4.1 44 1-45 1-47 (77)
27 2ylb_A Protein HFQ; RNA-bindin 97.6 7.9E-05 2.7E-09 43.0 3.8 62 1-75 3-67 (74)
28 1u1s_A HFQ protein; SM-like ba 97.5 8.8E-05 3E-09 43.6 3.8 44 1-45 1-47 (82)
29 3ahu_A Protein HFQ; SM-like mo 97.4 0.00015 5.1E-09 42.3 3.7 35 10-45 15-51 (78)
30 2y90_A Protein HFQ; RNA-bindin 97.3 0.00019 6.5E-09 43.9 3.1 44 1-45 3-49 (104)
31 1ycy_A Conserved hypothetical 97.3 0.00057 1.9E-08 38.5 4.7 64 6-74 6-69 (71)
32 3sb2_A Protein HFQ; SM-like, R 97.0 0.00088 3E-08 39.1 3.8 40 5-45 6-48 (79)
33 2qtx_A Uncharacterized protein 96.9 0.00072 2.5E-08 38.7 2.8 30 15-45 24-53 (71)
34 2vxe_A CG10686-PA; EDC3, CAR-1 96.7 0.0012 4.2E-08 39.1 2.9 66 13-78 10-85 (88)
35 2fb7_A SM-like protein, LSM-14 96.6 0.0012 4.1E-08 39.7 2.6 70 7-76 10-89 (95)
36 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.0067 2.3E-07 35.7 4.4 64 7-75 20-84 (85)
37 3hfo_A SSR3341 protein; HFQ, S 96.2 0.015 5E-07 33.1 5.5 60 4-74 6-68 (70)
38 2vc8_A Enhancer of mRNA-decapp 96.2 0.0029 9.9E-08 37.2 2.5 63 12-77 5-69 (84)
39 4a53_A EDC3; RNA binding prote 96.2 0.0073 2.5E-07 37.8 4.4 38 11-49 7-46 (125)
40 3hfn_A ASL2047 protein; HFQ, S 95.3 0.036 1.2E-06 31.6 4.6 56 8-74 13-70 (72)
41 1ib8_A Conserved protein SP14. 91.4 0.2 6.8E-06 32.2 3.5 36 8-44 96-135 (164)
42 2eay_A Biotin [acetyl-COA-carb 91.2 0.086 2.9E-06 35.4 1.7 46 15-66 187-232 (233)
43 3rux_A BIRA bifunctional prote 89.7 0.14 4.6E-06 35.3 1.7 33 15-47 223-255 (270)
44 1bia_A BIRA bifunctional prote 87.8 0.36 1.2E-05 33.6 2.9 47 15-66 272-318 (321)
45 2ej9_A Putative biotin ligase; 87.5 0.57 1.9E-05 31.4 3.6 46 15-65 191-236 (237)
46 2dxu_A Biotin--[acetyl-COA-car 87.1 0.25 8.7E-06 33.2 1.7 46 15-66 188-234 (235)
47 2rm4_A CG6311-PB, DM EDC3; enh 87.0 1.3 4.5E-05 26.5 4.6 64 12-78 8-73 (103)
48 4hcz_A PHD finger protein 1; p 77.5 1.9 6.4E-05 23.5 2.4 25 15-39 6-30 (58)
49 1sg5_A ORF, hypothetical prote 73.7 2.3 7.8E-05 24.6 2.3 25 10-34 19-43 (86)
50 2e12_A SM-like motif, hypothet 70.5 2.7 9.1E-05 24.9 2.1 19 16-34 28-46 (101)
51 2xk0_A Polycomb protein PCL; t 69.9 4 0.00014 22.8 2.6 24 14-37 17-40 (69)
52 2m0o_A PHD finger protein 1; t 68.6 2.8 9.6E-05 24.0 1.8 26 14-39 28-53 (79)
53 1x4r_A PARP14 protein; WWE dom 68.3 3.3 0.00011 24.7 2.2 21 30-50 34-54 (99)
54 2qqr_A JMJC domain-containing 67.6 3.8 0.00013 25.1 2.4 23 15-37 8-30 (118)
55 3rkx_A Biotin-[acetyl-COA-carb 65.5 2.4 8.3E-05 29.6 1.4 32 15-47 278-309 (323)
56 2eqj_A Metal-response element- 64.9 5.4 0.00018 22.1 2.5 25 15-39 16-40 (66)
57 3bfm_A Biotin protein ligase-l 63.1 3.1 0.00011 27.5 1.6 28 15-47 193-220 (235)
58 2e5p_A Protein PHF1, PHD finge 54.9 10 0.00035 21.1 2.5 25 15-39 12-36 (68)
59 2e5q_A PHD finger protein 19; 50.7 11 0.00036 20.7 2.1 25 15-39 10-34 (63)
60 3fb9_A Uncharacterized protein 49.8 14 0.00047 21.6 2.6 29 8-36 17-49 (90)
61 2xdp_A Lysine-specific demethy 49.3 5.4 0.00019 24.6 0.9 23 15-37 9-31 (123)
62 3by7_A Uncharacterized protein 42.5 19 0.00065 21.4 2.5 55 20-76 7-76 (100)
63 3uby_A DNA-3-methyladenine gly 34.8 46 0.0016 22.2 3.7 36 6-41 15-50 (219)
64 4a8c_A Periplasmic PH-dependen 34.1 21 0.00072 25.6 2.1 31 17-47 88-118 (436)
65 1ky9_A Protease DO, DEGP, HTRA 33.4 21 0.00072 25.8 2.0 31 17-47 111-141 (448)
66 3tee_A Flagella basal BODY P-r 33.1 19 0.00064 23.8 1.6 25 13-37 168-192 (219)
67 3sti_A Protease DEGQ; serine p 27.7 30 0.001 22.9 1.8 31 17-47 88-118 (245)
68 3g36_A Protein DPY-30 homolog; 26.8 35 0.0012 17.9 1.7 13 3-15 32-44 (55)
69 3pv2_A DEGQ; trypsin fold, PDZ 26.4 29 0.00098 25.1 1.7 31 17-47 102-132 (451)
70 3kl9_A PEPA, glutamyl aminopep 26.1 30 0.001 24.3 1.7 23 13-35 96-118 (355)
71 3stj_A Protease DEGQ; serine p 26.0 31 0.0011 23.9 1.8 31 17-47 88-118 (345)
72 2equ_A PHD finger protein 20-l 25.6 61 0.0021 17.8 2.6 24 15-38 12-35 (74)
73 2dir_A Thump domain-containing 25.4 38 0.0013 19.1 1.8 23 16-38 74-96 (98)
74 3mkv_A Putative amidohydrolase 23.4 22 0.00076 22.7 0.6 25 16-40 398-422 (426)
75 3p8d_A Medulloblastoma antigen 23.4 72 0.0025 17.4 2.6 25 15-39 9-33 (67)
76 3qx1_A FAS-associated factor 1 22.9 41 0.0014 18.4 1.6 21 18-38 9-29 (84)
77 1y8t_A Hypothetical protein RV 22.3 49 0.0017 22.3 2.2 29 17-45 64-92 (324)
78 4g9s_B Inhibitor of G-type lys 22.1 26 0.0009 20.3 0.7 22 16-37 2-26 (111)
79 1lcy_A HTRA2 serine protease; 21.8 45 0.0016 22.7 1.9 29 17-45 71-99 (325)
80 4a4f_A SurviVal of motor neuro 21.8 75 0.0026 16.6 2.5 24 15-38 11-35 (64)
81 3tjo_A Serine protease HTRA1; 21.4 51 0.0017 21.3 2.0 30 16-45 86-115 (231)
82 1zq1_A Glutamyl-tRNA(Gln) amid 21.0 87 0.003 22.9 3.4 40 7-46 3-53 (438)
83 1te0_A Protease DEGS; two doma 20.9 49 0.0017 22.4 1.9 30 17-46 66-95 (318)
84 3lgi_A Protease DEGS; stress-s 20.8 51 0.0017 21.2 1.9 29 17-45 77-105 (237)
85 3frn_A Flagellar protein FLGA; 20.7 42 0.0014 23.3 1.5 23 13-35 237-260 (278)
No 1
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.96 E-value=2.7e-29 Score=150.65 Aligned_cols=78 Identities=45% Similarity=0.787 Sum_probs=71.2
Q ss_pred CCCCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeeccc
Q psy10835 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRR 78 (80)
Q Consensus 1 m~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~~ 78 (80)
||++..|+++|++++|++|+|+|+||++|+|+|.|||+|||++|+||+|+.+++..+.+|.++|||++|++|++++..
T Consensus 1 ms~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp --CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CCcCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 899999999999999999999999999999999999999999999999987777778899999999999999998754
No 2
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.94 E-value=4.1e-28 Score=141.94 Aligned_cols=73 Identities=59% Similarity=1.097 Sum_probs=67.9
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
..|+++|++++||+|+|+|+||++|+|+|.|||+|||++|+||+|+.+++..+.+|.++|||++|++|++.++
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecCC
Confidence 6899999999999999999999999999999999999999999998777777889999999999999998875
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.94 E-value=2.4e-27 Score=138.84 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeec
Q psy10835 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
...|+++|++++|++|+|+|++|++|+|+|.+||+|||++|+||+|+..+++...+|.++|||++|++|++|+
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 4689999999999999999999999999999999999999999999754434678999999999999999986
No 4
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.93 E-value=3.6e-27 Score=138.18 Aligned_cols=74 Identities=31% Similarity=0.514 Sum_probs=68.4
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeeccc
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRR 78 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~~ 78 (80)
..|+++|++++|++|+|+|+||++|+|+|.|||+|||++|+||.|+..++..+.+|.++|||++|++|++++.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 58999999999999999999999999999999999999999999986676778899999999999999998764
No 5
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.93 E-value=3.9e-27 Score=137.49 Aligned_cols=72 Identities=33% Similarity=0.523 Sum_probs=67.4
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeec
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
..|.++|++++|++|+|+|+||++|+|+|.|||+|||++|+||+|+..+...+.+|.++|||++|++|++++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999866667788999999999999999876
No 6
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.93 E-value=2.9e-27 Score=139.96 Aligned_cols=78 Identities=31% Similarity=0.439 Sum_probs=69.0
Q ss_pred CC-CCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeeccc
Q psy10835 1 MS-RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKRR 78 (80)
Q Consensus 1 m~-~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~~ 78 (80)
|+ .+..|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..++..+.+|.++|||++|++|++++.+
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~~ 81 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQTS 81 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC---
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCCC
Confidence 44 3468999999999999999999999999999999999999999999986666678899999999999999998753
No 7
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.93 E-value=3e-27 Score=138.60 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=53.1
Q ss_pred CCCCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 1 m~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
||++ |.++|++++|++|+|+|+||++|+|+|.|||+|||++|+||.|+..++..+.+|.++|||++|++|++.++
T Consensus 1 ms~~--~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 1 MSKA--HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred CCCc--chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 7766 55579999999999999999999999999999999999999997655566889999999999999999875
No 8
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.93 E-value=1.3e-26 Score=137.80 Aligned_cols=73 Identities=32% Similarity=0.578 Sum_probs=68.4
Q ss_pred CCCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEe
Q psy10835 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74 (80)
Q Consensus 2 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~ 74 (80)
+.+..|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..++..+.+|.++|||++|++|++
T Consensus 11 ~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 4678999999999999999999999999999999999999999999998667677889999999999999975
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.93 E-value=2.2e-26 Score=134.97 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=67.6
Q ss_pred CChHHHHHhhhCCceEEEecCC-cccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeec
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
..|.++|.++++++|+|+|+|| ++|+|+|.|||+|||++|+||+|+..++..+.+|.++|||++|++|++++
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCC
Confidence 5899999999999999999999 99999999999999999999999866777789999999999999999986
No 10
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.93 E-value=1.6e-26 Score=136.91 Aligned_cols=72 Identities=35% Similarity=0.484 Sum_probs=67.3
Q ss_pred CCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeec
Q psy10835 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
+..|+++|.++++++|+|+|+||++|.|+|.+||+|||++|+||+|+ +++..+.+|.++|||++|++|++++
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 46899999999999999999999999999999999999999999998 6666788999999999999999876
No 11
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.92 E-value=1.6e-26 Score=140.41 Aligned_cols=74 Identities=35% Similarity=0.599 Sum_probs=63.0
Q ss_pred CCCChHHHHHhhhCCceEEEecCC-cccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeec
Q psy10835 3 RKESLSQFIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 3 ~~~~p~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
.+..|.++|++++|++|+|+|+|| ++|+|+|.|||+|||++|+||+|+.+++..+.+|.++|||++|++|.+++
T Consensus 18 ~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 18 QPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp --------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred ccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 456899999999999999999999 99999999999999999999999867777789999999999999999886
No 12
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.92 E-value=5.2e-26 Score=138.46 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=66.3
Q ss_pred CCCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhh-ccEeeccccCeEEecCcEEEEEeec
Q psy10835 2 SRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 2 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~-~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
+....|+++|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|+. +++..+.+|.++|||++|++|.+..
T Consensus 16 ~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 16 SMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp ----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred cccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 34568999999999999999999999999999999999999999999975 5656788999999999999999764
No 13
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.92 E-value=5.8e-26 Score=140.61 Aligned_cols=75 Identities=28% Similarity=0.509 Sum_probs=55.5
Q ss_pred CCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhh-hccEeeccccCeEEecCcEEEEEeecc
Q psy10835 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEY-INGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 3 ~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~-~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
.|..|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|. .+|+....+|.++|||++|++|.+|+.
T Consensus 13 ~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~ 88 (105)
T 4emh_A 13 DPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 88 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---
T ss_pred CCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHH
Confidence 356899999999999999999999999999999999999999999985 466567789999999999999999874
No 14
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.91 E-value=2.8e-25 Score=139.98 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=67.2
Q ss_pred ChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 6 ~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
.|+++|+++++++|+|+|+||++|+|+|.+||+|||++|+||+|+..+.....++.++|||++|++|++|+.
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTT
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccc
Confidence 699999999999999999999999999999999999999999998655556789999999999999999875
No 15
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.90 E-value=3.7e-25 Score=140.76 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=66.9
Q ss_pred CCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
...|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..+.....++.+||||++|+||++|+.
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~ 76 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDM 76 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSS
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEcccc
Confidence 46899999999999999999999999999999999999999999997433346789999999999999999874
No 16
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.1e-25 Score=133.31 Aligned_cols=74 Identities=27% Similarity=0.342 Sum_probs=65.9
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhc-------cEeeccccCeEEecCcEEEEEeecc
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-------GQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~-------~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
.-|.++|++++||+|+|+|+||++|.|+|.|||+|||++|+||.|+.. ++..+.+|.++|||++|++|.+++.
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 579999999999999999999999999999999999999999999632 3456789999999999999998875
Q ss_pred c
Q psy10835 78 R 78 (80)
Q Consensus 78 ~ 78 (80)
.
T Consensus 89 ~ 89 (96)
T 3bw1_A 89 D 89 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.90 E-value=3.4e-25 Score=133.37 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=63.5
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhh----------ccEeeccccCeEEecCcEEEEEe
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----------NGQLKNKYGDTFIRGNNVLYIST 74 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~----------~~~~~~~~g~v~irG~~I~~I~~ 74 (80)
.+|.++|.+++|++|+|+|+||++|.|+|.|||+||||+|+||.|+. .+...+.+|.++|||++|++|++
T Consensus 3 ~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~ 82 (91)
T 1d3b_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (91)
T ss_dssp ----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEE
T ss_pred CChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEc
Confidence 45677899999999999999999999999999999999999999952 24456789999999999999999
Q ss_pred eccc
Q psy10835 75 QKRR 78 (80)
Q Consensus 75 ~~~~ 78 (80)
++..
T Consensus 83 ~~~~ 86 (91)
T 1d3b_B 83 EGPP 86 (91)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8753
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.90 E-value=7.9e-25 Score=132.81 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=63.8
Q ss_pred CCCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhc-----c--------EeeccccCeEEecCcE
Q psy10835 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN-----G--------QLKNKYGDTFIRGNNV 69 (80)
Q Consensus 3 ~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~-----~--------~~~~~~g~v~irG~~I 69 (80)
+...|+++|+.++|++|+|+|+||++|+|+|.|||+|||++|+||.|+.. + +..+.+|.++|||++|
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGE
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeE
Confidence 34799999999999999999999999999999999999999999999632 3 1357899999999999
Q ss_pred EEEEee
Q psy10835 70 LYISTQ 75 (80)
Q Consensus 70 ~~I~~~ 75 (80)
++|+++
T Consensus 86 v~I~p~ 91 (93)
T 4emg_A 86 ILIAPP 91 (93)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999986
No 19
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.89 E-value=2.7e-24 Score=135.75 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=65.1
Q ss_pred CCChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhh----------ccEe-----eccccCeEEecCc
Q psy10835 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----------NGQL-----KNKYGDTFIRGNN 68 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~----------~~~~-----~~~~g~v~irG~~ 68 (80)
...|+++|.++++++|+|+|+||+.|+|+|.|||+||||+|+||+|+. +|+. .+.+|.++|||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 458999999999999999999999999999999999999999999864 1333 6789999999999
Q ss_pred EEEEEeecc
Q psy10835 69 VLYISTQKR 77 (80)
Q Consensus 69 I~~I~~~~~ 77 (80)
|++|.+.+.
T Consensus 106 Vv~I~~~~~ 114 (121)
T 2fwk_A 106 VAMLVPGGD 114 (121)
T ss_dssp EEEEESSSC
T ss_pred EEEEEecCC
Confidence 999998764
No 20
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.89 E-value=1.9e-24 Score=131.04 Aligned_cols=73 Identities=16% Similarity=0.338 Sum_probs=66.0
Q ss_pred CCChHHHHHhhhCCceEEEe----cCCcccceeeeeecccchhhhhhhhhhh-ccEeeccccCeEEecCcEEEEEeec
Q psy10835 4 KESLSQFIQQIHGRPVVVKL----VSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L----~~g~~~~G~L~~~D~~mNivL~~~~~~~-~~~~~~~~g~v~irG~~I~~I~~~~ 76 (80)
...|+++|.++++++|+|++ +||++|+|+|.|||+|||++|+||+|+. +++..+.+|.++|||++|.+|++.+
T Consensus 14 m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred ccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 34799999999999999999 9999999999999999999999999974 4555678999999999999999875
No 21
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.87 E-value=2.1e-23 Score=130.46 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=56.2
Q ss_pred CChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhcc-------EeeccccCeEEecCcEEEEEeecc
Q psy10835 5 ESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-------QLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 5 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~-------~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
..|...|.++++++|+|+|+||++|.|+|.|||+||||+|+||.|+..+ ...+.+|.++|||++|++|++++.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 4567799999999999999999999999999999999999999997432 246789999999999999998764
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.86 E-value=9.9e-23 Score=128.02 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCChHHHHHhhh--CCceEEEecCCcccceeeeeecccchhhhhhhhhhhcc-------E-------eeccccCeEEecC
Q psy10835 4 KESLSQFIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-------Q-------LKNKYGDTFIRGN 67 (80)
Q Consensus 4 ~~~p~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~-------~-------~~~~~g~v~irG~ 67 (80)
...|+++|..++ +++|+|+|+||+.|.|+|.|||+|||++|+||.|+... + ..+.+|.++|||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 358999999999 59999999999999999999999999999999986311 1 1346999999999
Q ss_pred cEEEEEeeccc
Q psy10835 68 NVLYISTQKRR 78 (80)
Q Consensus 68 ~I~~I~~~~~~ 78 (80)
+|++|.+++..
T Consensus 105 nVv~I~~~~~~ 115 (118)
T 1b34_B 105 SVIVVLRNPLI 115 (118)
T ss_dssp GEEEEEECCCC
T ss_pred EEEEEEeCchh
Confidence 99999998753
No 23
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.85 E-value=2.8e-22 Score=137.87 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=63.7
Q ss_pred ChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhc----------cEeeccccCeEEecCcEEEEEee
Q psy10835 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYIN----------GQLKNKYGDTFIRGNNVLYISTQ 75 (80)
Q Consensus 6 ~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~----------~~~~~~~g~v~irG~~I~~I~~~ 75 (80)
++...|++++||+|+|+|+||++|+|+|.+||+||||+|+||+|+.. +++.+.+|+++|||+||++|++.
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 56678999999999999999999999999999999999999999641 23568899999999999999976
Q ss_pred c
Q psy10835 76 K 76 (80)
Q Consensus 76 ~ 76 (80)
+
T Consensus 84 ~ 84 (231)
T 3pgw_B 84 G 84 (231)
T ss_pred C
Confidence 5
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.83 E-value=2e-21 Score=124.07 Aligned_cols=66 Identities=30% Similarity=0.501 Sum_probs=61.0
Q ss_pred HHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 8 ~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
.++|++++|++|+|+|+||++|+|+|.|||+|||++|+||+|+. + ..+|.++|||++|++|.+++.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~-~---~~lg~v~IRG~nI~~I~~~d~ 67 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA-G---EKFNRVFIMYRYIVHIDSTER 67 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT-C---CEEEEEEECGGGEEEEEECCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc-C---CEeceEEEeCCeEEEEEcCCc
Confidence 46899999999999999999999999999999999999999973 3 578999999999999999875
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.14 E-value=5.9e-11 Score=70.84 Aligned_cols=67 Identities=25% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCChHHHHHhhhCCceEEEecCCcccceeeeeec-ccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLD-GYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 4 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
..+|. .|++++||+|.|.|.||++|+|+|.++| ...|++|.|+.+ ++ .+..++|.|..|..|...+.
T Consensus 6 ~~~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~--~~----~~~~~iI~G~aI~eI~v~~~ 73 (86)
T 1y96_A 6 KKGPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE--DG----SMSVTGIMGHAVQTVETMNE 73 (86)
T ss_dssp HSCHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT--TS----CEEEEEECGGGEEEEEEEEC
T ss_pred hCCHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc--CC----eEEEEEEecceEEEEEEecc
Confidence 35676 7999999999999999999999999999 899999999932 22 35689999999999987664
No 26
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.63 E-value=7e-05 Score=43.57 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=32.6
Q ss_pred CCCCCChHH-HHHhhh--CCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 1 MSRKESLSQ-FIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 1 m~~~~~p~~-~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
|+++.+..+ +|+.+. ..+|+|.|.||..++|++.+||+|+ +.|+
T Consensus 1 m~~~~~lQd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 1 MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp -----CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CCcccccHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 666555533 777777 8889999999999999999999999 5554
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.58 E-value=7.9e-05 Score=43.03 Aligned_cols=62 Identities=23% Similarity=0.484 Sum_probs=41.5
Q ss_pred CCCCCChH-HHHHhhh--CCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEee
Q psy10835 1 MSRKESLS-QFIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75 (80)
Q Consensus 1 m~~~~~p~-~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~ 75 (80)
|+++.+.. .+|+.+. ..+|+|.|.||..++|.+.+||+|+ +.|++. ...+|.=..|.+|.+.
T Consensus 3 m~~~~~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~~------------~~~LIYKhAIsTI~p~ 67 (74)
T 2ylb_A 3 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKNT------------VSQMVYKHAISTVVPS 67 (74)
T ss_dssp -----CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEESS------------SEEEEEGGGEEEEEES
T ss_pred CccccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEECC------------ceEEEEeeeEEEEeEc
Confidence 55444443 3777777 7889999999999999999999999 555531 1345555566666543
No 28
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.55 E-value=8.8e-05 Score=43.63 Aligned_cols=44 Identities=30% Similarity=0.640 Sum_probs=31.9
Q ss_pred CCCCCChHH-HHHhhh--CCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 1 MSRKESLSQ-FIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 1 m~~~~~p~~-~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
|+++.+..+ +|+.+. +.+|+|.|.||..++|.+.+||+|+ +.|+
T Consensus 1 m~~~~nlQd~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 1 MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp -----CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CCcccchHHHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 555555433 677666 7789999999999999999999999 5555
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.42 E-value=0.00015 Score=42.27 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=30.3
Q ss_pred HHHhhh--CCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 10 FIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 10 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
+|+.+. +.+|+|.|.||..++|.+.+||+|+ +.|+
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 677776 8889999999999999999999999 4444
No 30
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.28 E-value=0.00019 Score=43.90 Aligned_cols=44 Identities=30% Similarity=0.664 Sum_probs=31.7
Q ss_pred CCCCCChH-HHHHhhhCC--ceEEEecCCcccceeeeeecccchhhhh
Q psy10835 1 MSRKESLS-QFIQQIHGR--PVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 1 m~~~~~p~-~~L~~~~~k--~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
|++..+.. .+|+.+..+ +|+|.|.||..++|++.+||+|+ +.|+
T Consensus 3 m~~~~nlQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 3 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp -----CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CccccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 55444443 377887744 79999999999999999999999 5555
No 31
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=97.26 E-value=0.00057 Score=38.48 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=45.8
Q ss_pred ChHHHHHhhhCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEe
Q psy10835 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74 (80)
Q Consensus 6 ~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~ 74 (80)
..-..|+..-|++|-|-......++|+|.-||+-. +.|+|++.+..++. ..++++=+.|-.|-+
T Consensus 6 LLdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GNk~----k~liv~idDinWimL 69 (71)
T 1ycy_A 6 LLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGNRG----KQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEEEE----EEEEEEGGGEEEEEE
T ss_pred HHHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcccc----ceeEEEeccceEEEe
Confidence 33457889999999999999999999999999876 78899998754322 256666666665544
No 32
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.97 E-value=0.00088 Score=39.07 Aligned_cols=40 Identities=28% Similarity=0.609 Sum_probs=31.6
Q ss_pred CChH-HHHHhhh--CCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 5 ESLS-QFIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 5 ~~p~-~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
.+.. .+|..+. ..+|+|.|.||..+.|.+.+||+|+ +.|+
T Consensus 6 ~nlQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~ 48 (79)
T 3sb2_A 6 QLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLR 48 (79)
T ss_dssp CTTHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cchHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 3443 3777776 5559999999999999999999999 4453
No 33
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.00072 Score=38.71 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.8
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
-+.+|+|.|.||..++|.+.+||+|+ +.|+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 36779999999999999999999999 4443
No 34
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.69 E-value=0.0012 Score=39.14 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=51.7
Q ss_pred hhhCCceEEEecCCcccceeeeeec-ccchhhhhhhhhh-hccE--------eeccccCeEEecCcEEEEEeeccc
Q psy10835 13 QIHGRPVVVKLVSGVDYRGVLSCLD-GYMNIALEQTEEY-INGQ--------LKNKYGDTFIRGNNVLYISTQKRR 78 (80)
Q Consensus 13 ~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNivL~~~~~~-~~~~--------~~~~~g~v~irG~~I~~I~~~~~~ 78 (80)
.++|+++.+.-+.+-.|.|+|..+| +..-+-|+||..+ .+|. ....++.+..||+.|.-+...+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 3799999999999999999999999 5566889988764 2221 123457799999999999877643
No 35
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.62 E-value=0.0012 Score=39.69 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=51.2
Q ss_pred hHHHHHhhhCCceEEEecCCcccceeeeeec-ccchhhhhhhhhh-hccE--------eeccccCeEEecCcEEEEEeec
Q psy10835 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLD-GYMNIALEQTEEY-INGQ--------LKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 7 p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNivL~~~~~~-~~~~--------~~~~~g~v~irG~~I~~I~~~~ 76 (80)
|..--..++|+++.+.-+.+-.|.|+|..+| +..-+-|+||..+ .+|. ....++.++.||+.|.-+...+
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 3334567899999999999999999999999 5666889988764 2221 1234678999999999987754
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.29 E-value=0.0067 Score=35.72 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=51.2
Q ss_pred hHHHHHhhhCCceEEEecCCcccceeeeeec-ccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEee
Q psy10835 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLD-GYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQ 75 (80)
Q Consensus 7 p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~ 75 (80)
.+.+|.++.|++|.+.+.++.+..|+..++| ...|+..++-.-- =| ..++-++|++.|+.++..
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~TP-iG----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTP-IG----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECCT-TC----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCCC-cc----cchhhhhhcCCEEEEEec
Confidence 4567888999999999999999999999999 6677776554321 12 356889999999998764
No 37
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=96.24 E-value=0.015 Score=33.09 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=43.5
Q ss_pred CCCh-HHHHHhhh--CCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEe
Q psy10835 4 KESL-SQFIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74 (80)
Q Consensus 4 ~~~p-~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~ 74 (80)
+..| ...|+.++ .++|.|+|.+|..+.|.+.-+|.++ +.|.+.. +. .++|.-..|.+|.+
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~~~----~~------~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVDDS----ER------STIVRLAAIAYITP 68 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEECTT----CC------EEEEEGGGEEEEEE
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEcCC----CC------eEEEEeeeeEEEee
Confidence 3445 56788887 6678999999999999999999988 4454331 21 35666677777754
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.21 E-value=0.0029 Score=37.21 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=51.8
Q ss_pred HhhhCCceEEEecCCc-ccceeeeeeccc-chhhhhhhhhhhccEeeccccCeEEecCcEEEEEeecc
Q psy10835 12 QQIHGRPVVVKLVSGV-DYRGVLSCLDGY-MNIALEQTEEYINGQLKNKYGDTFIRGNNVLYISTQKR 77 (80)
Q Consensus 12 ~~~~~k~V~V~L~~g~-~~~G~L~~~D~~-mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~~~~ 77 (80)
.+++|+.|.+..+++- .|.|.|..+|.. -||.|.++. .+|- .....++.+++..|.-+.+.+.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG~-~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNGV-KCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETTE-ECSSSEEEEEGGGCSEEEEEEC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCCC-CCCCcEEEEEecChhheEEEec
Confidence 4689999999999998 999999999954 579999993 5664 4455779999999888777654
No 39
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.20 E-value=0.0073 Score=37.85 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=33.2
Q ss_pred HHhhhCCceEEEecCCcccceeeeeecccchhhh--hhhhh
Q psy10835 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIAL--EQTEE 49 (80)
Q Consensus 11 L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNivL--~~~~~ 49 (80)
...++|.+|.|+|+||..++|++..+|. -+|.| ++|..
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~ 46 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAND 46 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTT
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEecccccc
Confidence 4688999999999999999999999994 45777 88864
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.32 E-value=0.036 Score=31.64 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=41.0
Q ss_pred HHHHHhhh--CCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEecCcEEEEEe
Q psy10835 8 SQFIQQIH--GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYIST 74 (80)
Q Consensus 8 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG~~I~~I~~ 74 (80)
...|+.++ .++|.|+|.+|..+.|.+.-.|.++ +.|.+.. + ..++|.-..|.||.+
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~----~------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADEN----S------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-------------CEEEEEGGGEEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcCC----C------CeEEEEeeeeEEEEe
Confidence 56889998 4558889999999999999999888 4444332 1 136777777777765
No 41
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.38 E-value=0.2 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHhhhCCceEEEec----CCcccceeeeeecccchhhh
Q psy10835 8 SQFIQQIHGRPVVVKLV----SGVDYRGVLSCLDGYMNIAL 44 (80)
Q Consensus 8 ~~~L~~~~~k~V~V~L~----~g~~~~G~L~~~D~~mNivL 44 (80)
..-+..++|+.|.|+++ +.+.++|+|.++|+-. +.|
T Consensus 96 ~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 96 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred HHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 34577889999999994 4589999999999643 444
No 42
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=91.18 E-value=0.086 Score=35.40 Aligned_cols=46 Identities=17% Similarity=0.068 Sum_probs=35.4
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEec
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG 66 (80)
+|++|.+...++ +.|+..++|+...|+++.. +|......|++.+|+
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTE----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEET----TEEEEECSCCEEEC-
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEEC----CCeEEEEEeEEEEec
Confidence 699999987765 9999999999999998753 243344567888775
No 43
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=89.70 E-value=0.14 Score=35.26 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.8
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
+|++|+|.+.++..+.|+..++|+...|+++..
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 499999998888999999999999999999754
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.82 E-value=0.36 Score=33.59 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=35.6
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEec
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~irG 66 (80)
+|++|.|...+ ..+.|+..++|+...|+++.. +|......|.+.+|.
T Consensus 272 ~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~----~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 272 INRPVKLIIGD-KEIFGISRGIDKQGALLLEQD----GIIKPWMGGEISLRS 318 (321)
T ss_dssp TTSEEEEEETT-EEEEEEEEEECTTSCEEEEET----TEEEEESSCEEEEC-
T ss_pred cCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC----CCEEEEEeeeEEEec
Confidence 69999998765 579999999999999998743 233344567777764
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=87.52 E-value=0.57 Score=31.40 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=34.2
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhhhhhhccEeeccccCeEEe
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~~~~~~~g~v~ir 65 (80)
+|++|.+...++..+.|+..++|+...|+ +.. +|......|++.++
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~~----~G~~~~~~Gev~~~ 236 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GTE----KGIERIPSGICIHV 236 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EET----TEEEEEEGGGEEEE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-EcC----CCCEEEEEEEEEEe
Confidence 69999999887766999999999999998 643 23333345666554
No 46
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=87.08 E-value=0.25 Score=33.17 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=31.6
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhhhhhhcc-EeeccccCeEEec
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYING-QLKNKYGDTFIRG 66 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~~~-~~~~~~g~v~irG 66 (80)
+|++|.+...++ +.|+..++|+...|+++.. +| ......|++.+|+
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~----~G~~~~~~~Gev~~~~ 234 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD----SGEVKKVIYGDVSLRF 234 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT----TSCEEEECCSSCCCEE
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC----CCCEEEEEeeEEEEec
Confidence 699999988776 9999999999999999753 23 2334456766653
No 47
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=86.97 E-value=1.3 Score=26.52 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=51.0
Q ss_pred HhhhCCceEEEecCCc-ccceeeeeecccchhhhhhhhhhhccEe-eccccCeEEecCcEEEEEeeccc
Q psy10835 12 QQIHGRPVVVKLVSGV-DYRGVLSCLDGYMNIALEQTEEYINGQL-KNKYGDTFIRGNNVLYISTQKRR 78 (80)
Q Consensus 12 ~~~~~k~V~V~L~~g~-~~~G~L~~~D~~mNivL~~~~~~~~~~~-~~~~g~v~irG~~I~~I~~~~~~ 78 (80)
++++|+-|.|...+.- .|+|.+...|+ -+|.|.++. .+|-. .....+|.++...|..+.+.+..
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaF--rNGiplk~~~~EVtLsa~DI~~L~IIe~~ 73 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAF--RNGVPLRKQNAEVVLKCTDIRSIDLIEPA 73 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEE--ETTEECSCSSSCEEEETTTEEEEEEEECC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhh--hcCcCcCCCCceEEEEecchhheeeeccc
Confidence 4789999999999986 99999999995 448888875 35631 23567999999999988877653
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=77.54 E-value=1.9 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.5
Q ss_pred hCCceEEEecCCcccceeeeeeccc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
.|+.|.++-.||+.|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4788999999999999999999854
No 49
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=73.75 E-value=2.3 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHhhhCCceEEEecCCcccceeee
Q psy10835 10 FIQQIHGRPVVVKLVSGVDYRGVLS 34 (80)
Q Consensus 10 ~L~~~~~k~V~V~L~~g~~~~G~L~ 34 (80)
.+....+.++.++|+||..+.|+..
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEE
Confidence 4556679999999999999998644
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=70.50 E-value=2.7 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.4
Q ss_pred CCceEEEecCCcccceeee
Q psy10835 16 GRPVVVKLVSGVDYRGVLS 34 (80)
Q Consensus 16 ~k~V~V~L~~g~~~~G~L~ 34 (80)
..+|.++|.||+.+.|++-
T Consensus 28 q~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp TCEEEEEETTSCEEEEEES
T ss_pred eeEEEEEEcCCCeEeeeec
Confidence 3569999999999999974
No 51
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=69.86 E-value=4 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.6
Q ss_pred hhCCceEEEecCCcccceeeeeec
Q psy10835 14 IHGRPVVVKLVSGVDYRGVLSCLD 37 (80)
Q Consensus 14 ~~~k~V~V~L~~g~~~~G~L~~~D 37 (80)
-+|+-|.++-.||+.|-|+++...
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecC
Confidence 368999999999999999995544
No 52
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=68.55 E-value=2.8 Score=24.03 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.1
Q ss_pred hhCCceEEEecCCcccceeeeeeccc
Q psy10835 14 IHGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 14 ~~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
-.|+-|.++-.||+.|-|++..+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 36899999999999999999998854
No 53
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.28 E-value=3.3 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.9
Q ss_pred ceeeeeecccchhhhhhhhhh
Q psy10835 30 RGVLSCLDGYMNIALEQTEEY 50 (80)
Q Consensus 30 ~G~L~~~D~~mNivL~~~~~~ 50 (80)
.|+..+||.-.|+.|++|...
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~~ 54 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWKA 54 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHHT
T ss_pred CCeEeechHHHHHHHHHHHHc
Confidence 688999999999999999853
No 54
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=67.64 E-value=3.8 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred hCCceEEEecCCcccceeeeeec
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLD 37 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D 37 (80)
+|++|..+-+||+.|.|++.+..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 69999999999999999998875
No 55
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=65.47 E-value=2.4 Score=29.60 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=26.9
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
+|++|+|... +..+.|+..++|+...|+++..
T Consensus 278 ~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 278 WNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp SSSCEEEECC--CEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEEC-CeEEEEEEEEECCCCEEEEEEC
Confidence 5999999875 4679999999999999998743
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=64.90 E-value=5.4 Score=22.13 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.6
Q ss_pred hCCceEEEecCCcccceeeeeeccc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
.|+.|+..-.||..|.|++..+|+.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5888999999999999999999963
No 57
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=63.06 E-value=3.1 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.2
Q ss_pred hCCceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
+||+|+| ++ +.|+..++|+...|+++..
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 5899999 45 9999999999999998643
No 58
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.91 E-value=10 Score=21.08 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.6
Q ss_pred hCCceEEEecCCcccceeeeeeccc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
.|+-|..+=.||..|-|++..+|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5888999999999999999999953
No 59
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.67 E-value=11 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.5
Q ss_pred hCCceEEEecCCcccceeeeeeccc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
.|+-|..+-.||..|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5888999999999999999999954
No 60
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=49.81 E-value=14 Score=21.63 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHhhhCCceEEEecCCc----ccceeeeee
Q psy10835 8 SQFIQQIHGRPVVVKLVSGV----DYRGVLSCL 36 (80)
Q Consensus 8 ~~~L~~~~~k~V~V~L~~g~----~~~G~L~~~ 36 (80)
...|.+.+|++|.++...|| +-.|+|...
T Consensus 17 K~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 35688999999999999995 457888764
No 61
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=49.27 E-value=5.4 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred hCCceEEEecCCcccceeeeeec
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLD 37 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D 37 (80)
+|++|..+-+||+.|.|++.+..
T Consensus 9 vGq~V~ak~~ngryy~~~V~~~~ 31 (123)
T 2xdp_A 9 VGQTVITKHRNTRYYSCRVMAVT 31 (123)
T ss_dssp TTCCCCCCCCCCCCCCCEEEEEE
T ss_pred cCCEEEEECCCCcEEeEEEEEEe
Confidence 69999999999999999998865
No 62
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=42.55 E-value=19 Score=21.38 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=38.1
Q ss_pred EEEecCCcccceeeeeecccchhhhhhhhhhh-----ccE----------eeccccCeEEecCcEEEEEeec
Q psy10835 20 VVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-----NGQ----------LKNKYGDTFIRGNNVLYISTQK 76 (80)
Q Consensus 20 ~V~L~~g~~~~G~L~~~D~~mNivL~~~~~~~-----~~~----------~~~~~g~v~irG~~I~~I~~~~ 76 (80)
.++|++|.++.|.+.--|+. +.++|..... +|+ ....-+.++||.++|+++.-+.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 47899999999999976653 6677766532 111 1123567999999999987653
No 63
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=34.81 E-value=46 Score=22.24 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=29.6
Q ss_pred ChHHHHHhhhCCceEEEecCCcccceeeeeecccch
Q psy10835 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMN 41 (80)
Q Consensus 6 ~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mN 41 (80)
.+.++=++++|+.+.-++.+|..+.|.++....|+=
T Consensus 15 ~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G 50 (219)
T 3uby_A 15 PAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLG 50 (219)
T ss_dssp CHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECS
T ss_pred CHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccC
Confidence 345666789999999999999899999998888763
No 64
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=34.06 E-value=21 Score=25.58 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=26.4
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
.++.|.+.||+.+.+++.++|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999998887765444
No 65
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=33.36 E-value=21 Score=25.77 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=26.2
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
.++.|.+.||+.+.+++.++|...+|-|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999998888765444
No 66
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=33.12 E-value=19 Score=23.84 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=20.4
Q ss_pred hhhCCceEEEecCCcccceeeeeec
Q psy10835 13 QIHGRPVVVKLVSGVDYRGVLSCLD 37 (80)
Q Consensus 13 ~~~~k~V~V~L~~g~~~~G~L~~~D 37 (80)
..+|..|+|++.+|+.+.|++.+-.
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~~g 192 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDSDG 192 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECTTS
T ss_pred cCCCCEEEEECCCCCEEEEEEecCC
Confidence 3578999999989999999887643
No 67
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=27.68 E-value=30 Score=22.91 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=24.8
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
.++.|.+.||+.+.+.+.+.|....|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4789999999999999999998776654433
No 68
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=26.79 E-value=35 Score=17.89 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=11.0
Q ss_pred CCCChHHHHHhhh
Q psy10835 3 RKESLSQFIQQIH 15 (80)
Q Consensus 3 ~~~~p~~~L~~~~ 15 (80)
+|..|+++|..++
T Consensus 32 rP~DPi~~LA~~L 44 (55)
T 3g36_A 32 RPPNPIEFLASYL 44 (55)
T ss_dssp CCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6789999998886
No 69
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=26.35 E-value=29 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=25.7
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
.++.|.+.||+.+.+++.++|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4688999999999999999998877755433
No 70
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=26.15 E-value=30 Score=24.28 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=19.1
Q ss_pred hhhCCceEEEecCCcccceeeee
Q psy10835 13 QIHGRPVVVKLVSGVDYRGVLSC 35 (80)
Q Consensus 13 ~~~~k~V~V~L~~g~~~~G~L~~ 35 (80)
.+.+++|+|..++|..|.|++-.
T Consensus 96 ~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 96 VVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TCSSCEEEEECTTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCCEEEEEEeC
Confidence 46799999999999989998753
No 71
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=26.05 E-value=31 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.4
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT 47 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~~ 47 (80)
.++.|.+.||+.+.+++.++|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999998777655433
No 72
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.64 E-value=61 Score=17.83 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.1
Q ss_pred hCCceEEEecCCcccceeeeeecc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDG 38 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~ 38 (80)
.|..+.-.-.||..|.+++.++|.
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~ 35 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINK 35 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEEST
T ss_pred CCCEEEEECCCCCEEEEEEEEECC
Confidence 478888888899999999999986
No 73
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=25.38 E-value=38 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.9
Q ss_pred CCceEEEecCCcccceeeeeecc
Q psy10835 16 GRPVVVKLVSGVDYRGVLSCLDG 38 (80)
Q Consensus 16 ~k~V~V~L~~g~~~~G~L~~~D~ 38 (80)
+..|.|++.++..+.|.+..|..
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 34688999999999999998764
No 74
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=23.44 E-value=22 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.0
Q ss_pred CCceEEEecCCcccceeeeeecccc
Q psy10835 16 GRPVVVKLVSGVDYRGVLSCLDGYM 40 (80)
Q Consensus 16 ~k~V~V~L~~g~~~~G~L~~~D~~m 40 (80)
.++|.-.++||+.|...|.|.|.+-
T Consensus 398 ~~~v~~Vi~~G~vv~~~l~g~~G~~ 422 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVNELEGHEGHH 422 (426)
T ss_dssp STTCCEEEETTEEEEECCC------
T ss_pred CCCccEEEECCEEEECCccCCCCCC
Confidence 4567778899999999999998763
No 75
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=23.38 E-value=72 Score=17.36 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=22.0
Q ss_pred hCCceEEEecCCcccceeeeeeccc
Q psy10835 15 HGRPVVVKLVSGVDYRGVLSCLDGY 39 (80)
Q Consensus 15 ~~k~V~V~L~~g~~~~G~L~~~D~~ 39 (80)
+|.+|...-.|++.|-+++.++++.
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5788888889999999999999975
No 76
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=22.92 E-value=41 Score=18.38 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.9
Q ss_pred ceEEEecCCcccceeeeeecc
Q psy10835 18 PVVVKLVSGVDYRGVLSCLDG 38 (80)
Q Consensus 18 ~V~V~L~~g~~~~G~L~~~D~ 38 (80)
+|.|++.||..+.+++..-|.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSB
T ss_pred EEEEECCCCCEEEEEeCCCCC
Confidence 578999999999999987774
No 77
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=22.32 E-value=49 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=24.5
Q ss_pred CceEEEecCCcccceeeeeecccchhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
.++.|.+.+|+.+.+++.++|...+|-|=
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAll 92 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVV 92 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEE
Confidence 47999999999999999999987776553
No 78
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=22.14 E-value=26 Score=20.34 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=16.7
Q ss_pred CCceEEEecCC---cccceeeeeec
Q psy10835 16 GRPVVVKLVSG---VDYRGVLSCLD 37 (80)
Q Consensus 16 ~k~V~V~L~~g---~~~~G~L~~~D 37 (80)
++.|.|.+.-| .++.|+|.++|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 46677777755 67888888887
No 79
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=21.80 E-value=45 Score=22.69 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=24.2
Q ss_pred CceEEEecCCcccceeeeeecccchhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
.++.|.+.+|+.+.+++.++|...+|-|=
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAll 99 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATL 99 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEE
Confidence 57899999999999999999977666543
No 80
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=21.76 E-value=75 Score=16.55 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred hCCceEEEe-cCCcccceeeeeecc
Q psy10835 15 HGRPVVVKL-VSGVDYRGVLSCLDG 38 (80)
Q Consensus 15 ~~k~V~V~L-~~g~~~~G~L~~~D~ 38 (80)
.|..+.... .||.-|++++.+++.
T Consensus 11 vGd~c~A~~s~Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 11 VGDKCMAVWSEDGQCYEAEIEEIDE 35 (64)
T ss_dssp TTCEEEEECTTTSSEEEEEEEEEET
T ss_pred CCCEEEEEECCCCCEEEEEEEEEcC
Confidence 577888887 599999999999985
No 81
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=21.36 E-value=51 Score=21.26 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=24.7
Q ss_pred CCceEEEecCCcccceeeeeecccchhhhh
Q psy10835 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 16 ~k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
..++.|.+.+|+.+.+++.++|...+|-|=
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL 115 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALI 115 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEE
Confidence 357899999999999999999987665543
No 82
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=21.01 E-value=87 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=28.5
Q ss_pred hHHHHHhhh---CCceEEEecCC---cccceeeee-ec----ccchhhhhh
Q psy10835 7 LSQFIQQIH---GRPVVVKLVSG---VDYRGVLSC-LD----GYMNIALEQ 46 (80)
Q Consensus 7 p~~~L~~~~---~k~V~V~L~~g---~~~~G~L~~-~D----~~mNivL~~ 46 (80)
-.++|++.- |.+|+|+.++| ..|.|+|.- ++ ++.=|.|+|
T Consensus 3 ~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (438)
T 1zq1_A 3 VDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLEN 53 (438)
T ss_dssp HHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETT
T ss_pred hHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccC
Confidence 346677664 99999999998 799999983 33 444444444
No 83
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=20.93 E-value=49 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.7
Q ss_pred CceEEEecCCcccceeeeeecccchhhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQ 46 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~~ 46 (80)
..+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 468899999999999999999877765543
No 84
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=20.79 E-value=51 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred CceEEEecCCcccceeeeeecccchhhhh
Q psy10835 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALE 45 (80)
Q Consensus 17 k~V~V~L~~g~~~~G~L~~~D~~mNivL~ 45 (80)
.++.|.+.+|+.+.+.+.++|...+|-|=
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 57899999999999999999987665443
No 85
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=20.73 E-value=42 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=17.9
Q ss_pred hhhCCceEEE-ecCCcccceeeee
Q psy10835 13 QIHGRPVVVK-LVSGVDYRGVLSC 35 (80)
Q Consensus 13 ~~~~k~V~V~-L~~g~~~~G~L~~ 35 (80)
...|..|+|+ +.+|+.+.|+..+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4579999999 9999999998874
Done!