Your job contains 1 sequence.
>psy10835
MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG
DTFIRGNNVLYISTQKRRGV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10835
(80 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034564 - symbol:CG9344 species:7227 "Drosophila m... 364 2.0e-33 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 339 8.8e-31 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 339 8.8e-31 1
ZFIN|ZDB-GENE-040625-50 - symbol:lsm6 "LSM6 homolog, U6 s... 331 6.2e-30 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 304 4.5e-27 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 298 1.9e-26 1
TAIR|locus:2043969 - symbol:LSM6B "AT2G43810" species:370... 295 4.0e-26 1
DICTYBASE|DDB_G0275719 - symbol:lsm6 "putative U6 small n... 252 1.5e-21 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 250 2.4e-21 1
GENEDB_PFALCIPARUM|PF13_0142 - symbol:PF13_0142 "u6 snRNA... 220 3.6e-18 1
UNIPROTKB|Q8IE68 - symbol:PF13_0142 "Lsm6 homologue, puta... 220 3.6e-18 1
ASPGD|ASPL0000032943 - symbol:AN10719 species:162425 "Eme... 215 1.2e-17 1
UNIPROTKB|A4RQ29 - symbol:LSM6 "U6 snRNA-associated Sm-li... 200 4.7e-16 1
UNIPROTKB|F1P4B8 - symbol:SNRPF "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|Q3T0Z8 - symbol:SNRPF "Small nuclear ribonucleo... 171 5.6e-13 1
UNIPROTKB|F1Q0L5 - symbol:SNRPF "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|P62306 - symbol:SNRPF "Small nuclear ribonucleo... 171 5.6e-13 1
UNIPROTKB|F1SQR4 - symbol:SNRPF "Uncharacterized protein"... 171 5.6e-13 1
MGI|MGI:1917128 - symbol:Snrpf "small nuclear ribonucleop... 171 5.6e-13 1
RGD|1588229 - symbol:Snrpf "small nuclear ribonucleoprote... 171 5.6e-13 1
ZFIN|ZDB-GENE-040930-9 - symbol:snrpf "small nuclear ribo... 169 9.1e-13 1
GENEDB_PFALCIPARUM|PF11_0280 - symbol:PF11_0280 "small nu... 167 1.5e-12 1
UNIPROTKB|Q8II94 - symbol:PF11_0280 "Small nuclear ribonu... 167 1.5e-12 1
UNIPROTKB|J9NRX2 - symbol:J9NRX2 "Uncharacterized protein... 163 3.9e-12 1
FB|FBgn0000426 - symbol:SmF "Small ribonucleoprotein part... 157 1.7e-11 1
SGD|S000002786 - symbol:LSM6 "Lsm (Like Sm) protein" spec... 154 3.5e-11 1
DICTYBASE|DDB_G0278821 - symbol:snrpF "putative small nuc... 153 4.5e-11 1
WB|WBGene00004918 - symbol:snr-5 species:6239 "Caenorhabd... 151 7.4e-11 1
UNIPROTKB|P34659 - symbol:snr-5 "Probable small nuclear r... 151 7.4e-11 1
POMBASE|SPBC3E7.14 - symbol:smf1 "Sm snRNP core protein S... 136 2.9e-09 1
TAIR|locus:4010713621 - symbol:AT2G14285 "AT2G14285" spec... 132 7.6e-09 1
ASPGD|ASPL0000063345 - symbol:AN10966 species:162425 "Eme... 123 6.8e-08 1
SGD|S000006386 - symbol:SMX3 "Core Sm protein Sm F" speci... 118 2.3e-07 1
UNIPROTKB|G4NHA4 - symbol:MGG_03895 "Small nuclear ribonu... 117 2.9e-07 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 100 1.9e-05 1
UNIPROTKB|D4AA39 - symbol:D4AA39 "Uncharacterized protein... 97 3.9e-05 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 90 0.00021 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 90 0.00021 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 88 0.00035 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 86 0.00057 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 84 0.00093 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 84 0.00093 1
>FB|FBgn0034564 [details] [associations]
symbol:CG9344 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005688 "U6 snRNP"
evidence=NAS] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0005681
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P54999 KO:K12625 OMA:YISTSTK GeneTree:ENSGT00700000104493
EMBL:AY113474 RefSeq:NP_611528.1 UniGene:Dm.18844 SMR:Q9W2P5
IntAct:Q9W2P5 MINT:MINT-967510 STRING:Q9W2P5
EnsemblMetazoa:FBtr0071520 GeneID:37372 KEGG:dme:Dmel_CG9344
UCSC:CG9344-RA FlyBase:FBgn0034564 InParanoid:Q9W2P5
OrthoDB:EOG45DV65 GenomeRNAi:37372 NextBio:803315 Uniprot:Q9W2P5
Length = 79
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 69/78 (88%), Positives = 73/78 (93%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MSRKE+LSQFI QIHGRPV VKL +GVDYRGVL+CLDGYMNI LEQTEEY+NGQLKNKYG
Sbjct: 1 MSRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYG 60
Query: 61 DTFIRGNNVLYISTQKRR 78
D FIRGNNVLYISTQKRR
Sbjct: 61 DAFIRGNNVLYISTQKRR 78
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIALEQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
FIRGNNVLYISTQKRR
Sbjct: 64 FIRGNNVLYISTQKRR 79
>ZFIN|ZDB-GENE-040625-50 [details] [associations]
symbol:lsm6 "LSM6 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040625-50 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493
EMBL:BX324156 EMBL:BC072549 IPI:IPI00851796 RefSeq:NP_001002077.1
UniGene:Dr.81719 STRING:Q6IMW9 Ensembl:ENSDART00000053773
Ensembl:ENSDART00000147458 GeneID:415167 KEGG:dre:415167
InParanoid:Q6IMW9 NextBio:20818839 Uniprot:Q6IMW9
Length = 80
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDT 62
RK++ S F++QI GRPVVVKL SGVDYRGVL+CLDGYMNIA+EQTEEY+NGQLKNKYGD
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDA 63
Query: 63 FIRGNNVLYISTQKRR 78
F+RGNNVLYISTQKR+
Sbjct: 64 FLRGNNVLYISTQKRK 79
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 55/77 (71%), Positives = 70/77 (90%)
Query: 1 MSRKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYG 60
MS++++ ++F++++ G+PVVVKL SGVDYRG+L+CLDGYMNIALEQTEEY NGQL+NKYG
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 61 DTFIRGNNVLYISTQKR 77
D FIRGNNVLYIST +
Sbjct: 61 DAFIRGNNVLYISTSTK 77
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++ I GRPVVVKL SGVDYRG L+CLDGYMNIA+EQTEEY+NGQLKNKYGD FIRGN
Sbjct: 16 ADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
Query: 68 NVLYIST 74
NVLYIST
Sbjct: 76 NVLYIST 82
>TAIR|locus:2043969 [details] [associations]
symbol:LSM6B "AT2G43810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC002333 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 EMBL:BT008305 EMBL:AK227857
EMBL:AK317095 IPI:IPI00538248 PIR:G84870 RefSeq:NP_001078052.1
RefSeq:NP_181909.1 UniGene:At.36842 ProteinModelPortal:O22823
SMR:O22823 STRING:O22823 PRIDE:O22823 EnsemblPlants:AT2G43810.1
EnsemblPlants:AT2G43810.2 GeneID:818985 KEGG:ath:AT2G43810
TAIR:At2g43810 InParanoid:O22823 OMA:YISTTKG PhylomeDB:O22823
ProtClustDB:CLSN2683093 ArrayExpress:O22823 Genevestigator:O22823
Uniprot:O22823
Length = 91
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F++ I G+PVVVKL SGVDYRG+L+CLDGYMNIA+EQTEEY+NGQLKN YGD F+RGN
Sbjct: 16 ADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGN 75
Query: 68 NVLYISTQK 76
NVLYIST K
Sbjct: 76 NVLYISTTK 84
>DICTYBASE|DDB_G0275719 [details] [associations]
symbol:lsm6 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0275719
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000013
GO:GO:0008033 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 RefSeq:XP_643590.1 HSSP:P54999
ProteinModelPortal:Q552U1 STRING:Q552U1 EnsemblProtists:DDB0233198
GeneID:8620177 KEGG:ddi:DDB_G0275719 KO:K12625 OMA:EQTEEYL
Uniprot:Q552U1
Length = 88
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 47/69 (68%), Positives = 56/69 (81%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F + GRPVVVKL +GV+YRG+L +DG MNI +EQTEEY+NGQLK KYGD F+RGNNV
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 70 LYISTQKRR 78
LYIS Q R+
Sbjct: 80 LYISAQPRK 88
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 43/68 (63%), Positives = 59/68 (86%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S ++F+ ++ G+ V+++L SGVDY+G+LSCLDGYMN+ALE+TEEY+NG+ N YGD FIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 66 GNNVLYIS 73
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>GENEDB_PFALCIPARUM|PF13_0142 [details] [associations]
symbol:PF13_0142 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F++ + GR V+V+L +G DY+G+L+CLD MN+ALEQTEEY +G+L +KY D FIR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>UNIPROTKB|Q8IE68 [details] [associations]
symbol:PF13_0142 "Lsm6 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 OMA:YISTSTK
HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
S F++ + GR V+V+L +G DY+G+L+CLD MN+ALEQTEEY +G+L +KY D FIR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
Query: 66 GNNVLYI 72
GNNV YI
Sbjct: 65 GNNVFYI 71
>ASPGD|ASPL0000032943 [details] [associations]
symbol:AN10719 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0030490
"maturation of SSU-rRNA" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001305 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:YISTSTK HOGENOM:HOG000223542
EnsemblFungi:CADANIAT00003251 Uniprot:C8VFC9
Length = 80
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
S F+ +I G PV VKL SGV Y+G L +DGYMNIALE+++E+++GQL YGD FIRGN
Sbjct: 13 SAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGDAFIRGN 72
Query: 68 NVLYIS 73
NVLYI+
Sbjct: 73 NVLYIA 78
>UNIPROTKB|A4RQ29 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003723
GO:GO:0008033 GO:GO:0000932 EMBL:CM001231 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12625 RefSeq:XP_003710600.1
ProteinModelPortal:A4RQ29 STRING:A4RQ29 EnsemblFungi:MGG_05701T0
GeneID:2676106 KEGG:mgr:MGG_05701 OrthoDB:EOG4CC7B6 Uniprot:A4RQ29
Length = 83
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 38/66 (57%), Positives = 49/66 (74%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGN 67
+ F+ +I G V VKL SGV Y+G L +DGYMNIALE+ EE++ GQ K YGD F+RGN
Sbjct: 15 TSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGN 74
Query: 68 NVLYIS 73
NV+YI+
Sbjct: 75 NVMYIA 80
>UNIPROTKB|F1P4B8 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AADN02005953
IPI:IPI00574447 ProteinModelPortal:F1P4B8
Ensembl:ENSGALT00000018617 NextBio:20821146 Uniprot:F1P4B8
Length = 85
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 9 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 68
Query: 70 LYI 72
LYI
Sbjct: 69 LYI 71
>UNIPROTKB|Q3T0Z8 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
UniGene:Bt.24628 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 HOGENOM:HOG000223542
EMBL:BC102192 IPI:IPI00689386 RefSeq:NP_001181956.1
ProteinModelPortal:Q3T0Z8 SMR:Q3T0Z8 STRING:Q3T0Z8 PRIDE:Q3T0Z8
Ensembl:ENSBTAT00000021643 GeneID:615240 KEGG:bta:615240 CTD:6636
GeneTree:ENSGT00700000104493 InParanoid:Q3T0Z8 KO:K11098
OMA:KWGHEYK OrthoDB:EOG4TMR3P NextBio:20899519 Uniprot:Q3T0Z8
Length = 86
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>UNIPROTKB|F1Q0L5 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AAEX03009953
Ensembl:ENSCAFT00000010335 Uniprot:F1Q0L5
Length = 111
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 35 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 94
Query: 70 LYI 72
LYI
Sbjct: 95 LYI 97
>UNIPROTKB|P62306 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP;TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IMP] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471054 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG052369
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6636 KO:K11098 OMA:KWGHEYK OrthoDB:EOG4TMR3P EMBL:X85372
EMBL:CR456751 EMBL:AK311752 EMBL:BC002505 EMBL:BC063397
EMBL:BC128452 EMBL:BC128453 IPI:IPI00220528 PIR:S55053
RefSeq:NP_003086.1 UniGene:Hs.105465 ProteinModelPortal:P62306
SMR:P62306 DIP:DIP-31221N IntAct:P62306 MINT:MINT-1137229
STRING:P62306 PhosphoSite:P62306 DMDM:61237391 PaxDb:P62306
PeptideAtlas:P62306 PRIDE:P62306 Ensembl:ENST00000266735
GeneID:6636 KEGG:hsa:6636 UCSC:uc001tej.3 GeneCards:GC12P096252
HGNC:HGNC:11162 MIM:603541 neXtProt:NX_P62306 PharmGKB:PA36003
InParanoid:P62306 PhylomeDB:P62306 ChiTaRS:SNRPF
EvolutionaryTrace:P62306 GenomeRNAi:6636 NextBio:25853
PMAP-CutDB:P62306 ArrayExpress:P62306 Bgee:P62306 CleanEx:HS_SNRPF
Genevestigator:P62306 GermOnline:ENSG00000139343 Uniprot:P62306
Length = 86
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>UNIPROTKB|F1SQR4 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 CTD:6636
GeneTree:ENSGT00700000104493 KO:K11098 OMA:KWGHEYK EMBL:CU633406
RefSeq:NP_001177142.1 UniGene:Ssc.5241 ProteinModelPortal:F1SQR4
SMR:F1SQR4 PRIDE:F1SQR4 Ensembl:ENSSSCT00000000979 GeneID:100155855
KEGG:ssc:100155855 Uniprot:F1SQR4
Length = 86
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>MGI|MGI:1917128 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609 MGI:MGI:1917128
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 CTD:6636 KO:K11098 OMA:KWGHEYK
OrthoDB:EOG4TMR3P EMBL:AK008240 IPI:IPI00943994 RefSeq:NP_081522.1
UniGene:Mm.259642 ProteinModelPortal:P62307 SMR:P62307
STRING:P62307 PhosphoSite:P62307 PaxDb:P62307 PRIDE:P62307
Ensembl:ENSMUST00000020203 GeneID:69878 KEGG:mmu:69878
InParanoid:P62307 NextBio:330523 Bgee:P62307 CleanEx:MM_SNRPF
Genevestigator:P62307 Uniprot:P62307
Length = 86
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>RGD|1588229 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA;ISO] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
CTD:6636 GeneTree:ENSGT00700000104493 KO:K11098 OrthoDB:EOG4TMR3P
IPI:IPI00768974 RefSeq:NP_001119563.1 UniGene:Rn.14918 SMR:D4AAT4
Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737
UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4
Length = 86
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>ZFIN|ZDB-GENE-040930-9 [details] [associations]
symbol:snrpf "small nuclear ribonucleoprotein
polypeptide F" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040930-9
GO:GO:0005634 GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOVERGEN:HBG052369 HOGENOM:HOG000223542 CTD:6636
KO:K11098 OrthoDB:EOG4TMR3P EMBL:BC162363 EMBL:BC162369
EMBL:AY648838 IPI:IPI00513235 RefSeq:NP_001003881.1
UniGene:Dr.84144 STRING:Q6DRC1 GeneID:445404 KEGG:dre:445404
eggNOG:NOG237730 InParanoid:Q6DRC1 NextBio:20832108 Uniprot:Q6DRC1
Length = 86
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR NNV
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>GENEDB_PFALCIPARUM|PF11_0280 [details] [associations]
symbol:PF11_0280 "small nuclear
ribonucleoprotein F, putative" species:5833 "Plasmodium falciparum"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G V++KL G++Y+G+L DGYMNI L EE+I+G+ K G+ F+R NN+
Sbjct: 13 FLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRCNNI 72
Query: 70 LYI 72
LYI
Sbjct: 73 LYI 75
>UNIPROTKB|Q8II94 [details] [associations]
symbol:PF11_0280 "Small nuclear ribonucleoprotein F,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G V++KL G++Y+G+L DGYMNI L EE+I+G+ K G+ F+R NN+
Sbjct: 13 FLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRCNNI 72
Query: 70 LYI 72
LYI
Sbjct: 73 LYI 75
>UNIPROTKB|J9NRX2 [details] [associations]
symbol:J9NRX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GeneTree:ENSGT00700000104493 OMA:EMLLRNN
EMBL:AAEX03016702 Ensembl:ENSCAFT00000047358 Uniprot:J9NRX2
Length = 86
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F + G+PV VKL G++Y+G L +DGYMN+ L TEEYI+G L G+ IR NNV
Sbjct: 10 FPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNV 69
Query: 70 LYI 72
LYI
Sbjct: 70 LYI 72
>FB|FBgn0000426 [details] [associations]
symbol:SmF "Small ribonucleoprotein particle protein SmF"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GeneTree:ENSGT00700000104493 KO:K11098
OMA:KWGHEYK EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2
UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297
DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:Q24297
PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314
KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426
InParanoid:Q24297 OrthoDB:EOG4DBRXC PhylomeDB:Q24297
GenomeRNAi:36314 NextBio:797873 Bgee:Q24297 GermOnline:CG16792
Uniprot:Q24297
Length = 88
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+VKL G +Y+G L +DGYMN+ L TEE I G + G+ IR NNV
Sbjct: 12 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNV 71
Query: 70 LYI 72
LYI
Sbjct: 72 LYI 74
>SGD|S000002786 [details] [associations]
symbol:LSM6 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030490 "maturation of SSU-rRNA"
evidence=IMP] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] SGD:S000002786 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0008033 EMBL:U28373 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0030490 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 OrthoDB:EOG4CC7B6 HOGENOM:HOG000223542 PIR:S61173
RefSeq:NP_010666.2 ProteinModelPortal:Q06406 SMR:Q06406
DIP:DIP-1418N IntAct:Q06406 MINT:MINT-403097 STRING:Q06406
PaxDb:Q06406 PeptideAtlas:Q06406 EnsemblFungi:YDR378C GeneID:851984
KEGG:sce:YDR378C OMA:FMNVALS NextBio:970136 Genevestigator:Q06406
GermOnline:YDR378C Uniprot:Q06406
Length = 86
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 8 SQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQ-TEEYI--NGQLKNKYG-DTF 63
++F+ I G+ V VKL SG+ Y G L +DG+MN+AL TE Y N +L NK+ D F
Sbjct: 13 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 72
Query: 64 IRGNNVLYISTQK 76
+RG V+YIS QK
Sbjct: 73 LRGTQVMYISEQK 85
>DICTYBASE|DDB_G0278821 [details] [associations]
symbol:snrpF "putative small nuclear
ribonucleoprotein F" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR016487
PIRSF:PIRSF006609 dictyBase:DDB_G0278821 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397
GO:GO:0003723 EMBL:AAFI02000024 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P54999 KO:K11098 OMA:KWGHEYK RefSeq:XP_641988.1
ProteinModelPortal:Q54XP2 STRING:Q54XP2 PRIDE:Q54XP2
EnsemblProtists:DDB0233199 GeneID:8621720 KEGG:ddi:DDB_G0278821
Uniprot:Q54XP2
Length = 91
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 1 MSRKESLSQ--FIQQIHGRPVVVKLV-SGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
MS+ E+L+ F+ + G+ + V+L G++YRG+L+ +D YMN+ L TEE+I+G K
Sbjct: 1 MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG 60
Query: 58 KYGDTFIRGNNVLYI 72
G+ IR NNVL++
Sbjct: 61 PLGEVLIRCNNVLFV 75
>WB|WBGene00004918 [details] [associations]
symbol:snr-5 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0000003 GO:GO:0003723 GO:GO:0040039 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+GVL +D YMN+ L EEYI+G + G+ IR NNV
Sbjct: 12 FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYV 74
>UNIPROTKB|P34659 [details] [associations]
symbol:snr-5 "Probable small nuclear ribonucleoprotein F"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0000003
GO:GO:0003723 GO:GO:0040039 GO:GO:0030529 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+ VV KL G++Y+GVL +D YMN+ L EEYI+G + G+ IR NNV
Sbjct: 12 FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNV 71
Query: 70 LYI 72
LY+
Sbjct: 72 LYV 74
>POMBASE|SPBC3E7.14 [details] [associations]
symbol:smf1 "Sm snRNP core protein Smf1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609
PomBase:SPBC3E7.14 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GO:GO:0000395 KO:K11098
PIR:T40388 RefSeq:NP_596101.1 ProteinModelPortal:O59734 SMR:O59734
IntAct:O59734 STRING:O59734 PRIDE:O59734 EnsemblFungi:SPBC3E7.14.1
GeneID:2540330 KEGG:spo:SPBC3E7.14 OMA:EMLLRNN OrthoDB:EOG4GJ2ZZ
NextBio:20801459 Uniprot:O59734
Length = 78
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+Q + G+PV+V+L G +Y+G L +D YMN+ L EE ++G G+ IR NNV
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
Query: 70 LYI 72
L++
Sbjct: 71 LWV 73
>TAIR|locus:4010713621 [details] [associations]
symbol:AT2G14285 "AT2G14285" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223542 KO:K11098 EMBL:AK220634
IPI:IPI00846292 RefSeq:NP_001077889.1 UniGene:At.49527
ProteinModelPortal:Q570S3 SMR:Q570S3 STRING:Q570S3
EnsemblPlants:AT2G14285.1 GeneID:5007874 KEGG:ath:AT2G14285
ProtClustDB:CLSN2699068 Genevestigator:Q570S3 Uniprot:Q570S3
Length = 61
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 27 VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
++Y+G L+ +D YMN+ L TEEYI+GQL G+ IR NNVLY+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46
>ASPGD|ASPL0000063345 [details] [associations]
symbol:AN10966 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676 GO:GO:0006396
GO:GO:0030529 EMBL:BN001304 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223542
OMA:KWGHEYK EnsemblFungi:CADANIAT00000721 Uniprot:C8VBV2
Length = 88
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 10 FIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F+Q G V+V+L G +Y+G L +D YMN+ L TEE+I+G+ G IR NN
Sbjct: 11 FLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIRCNN 70
Query: 69 VLYIST 74
+L++ +
Sbjct: 71 ILWMGS 76
>SGD|S000006386 [details] [associations]
symbol:SMX3 "Core Sm protein Sm F" species:4932
"Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 SGD:S000006386 INTERPRO:IPR001163 GO:GO:0005682
GO:GO:0003723 EMBL:BK006949 GO:GO:0000398 EMBL:U25842
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GeneTree:ENSGT00700000104493
KO:K11098 OMA:KWGHEYK OrthoDB:EOG4GJ2ZZ EMBL:X82778 EMBL:AY558049
PIR:S55055 RefSeq:NP_015508.1 PDB:1N9R PDB:1N9S PDBsum:1N9R
PDBsum:1N9S ProteinModelPortal:P54999 SMR:P54999 DIP:DIP-1634N
IntAct:P54999 MINT:MINT-391069 STRING:P54999 PaxDb:P54999
PeptideAtlas:P54999 EnsemblFungi:YPR182W GeneID:856312
KEGG:sce:YPR182W CYGD:YPR182w EvolutionaryTrace:P54999
NextBio:981688 Genevestigator:P54999 GermOnline:YPR182W
Uniprot:P54999
Length = 86
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 10 FIQQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNN 68
F++ + V VKL + +YRG L D Y N+ L + EE++ G G+ FIR NN
Sbjct: 18 FLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNN 77
Query: 69 VLYI 72
VLYI
Sbjct: 78 VLYI 81
>UNIPROTKB|G4NHA4 [details] [associations]
symbol:MGG_03895 "Small nuclear ribonucleoprotein F"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K11098 RefSeq:XP_003719981.1 ProteinModelPortal:G4NHA4
EnsemblFungi:MGG_03895T0 GeneID:2677482 KEGG:mgr:MGG_03895
Uniprot:G4NHA4
Length = 88
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 11 IQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+Q + + V V+L G +Y+G L +D YMNI L +EYI+ +L+ G IR NNV
Sbjct: 12 LQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQILIRCNNV 71
Query: 70 LYI 72
L++
Sbjct: 72 LWV 74
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI-NGQLKNKYGDTFIRGNNVLYIST 74
GRP++V+L +G + G L D YMN+ L + + +G + + +IRGNN+ Y+
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRI 71
Query: 75 Q 75
Q
Sbjct: 72 Q 72
>UNIPROTKB|D4AA39 [details] [associations]
symbol:D4AA39 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 OrthoDB:EOG4TMR3P IPI:IPI00191860
PRIDE:D4AA39 Ensembl:ENSRNOT00000002290 Uniprot:D4AA39
Length = 83
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
F+ + G+PV+V+L G +Y+ L +DGYM+ L + N ++ + G+ R NNV
Sbjct: 10 FLNGLTGKPVMVRLKRGTEYKDYLVSVDGYMDTQLANQK---NTEMGHCLGEALKRCNNV 66
Query: 70 LYI 72
YI
Sbjct: 67 PYI 69
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ + +++KL G G+L D +MN+ L+ T E KN G IRGN+++
Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIV 68
Query: 71 YISTQKR 77
+ R
Sbjct: 69 MVEALDR 75
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQT-EEYINGQLKNKYGDTFIRGNNVLYIST 74
R V V+L GVL D ++NI LE + EE ++G+ K K G IRGN+V+ I T
Sbjct: 15 RQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE-KVKIGSVAIRGNSVIMIET 72
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI 51
+KES+ +Q+ G+ + VK G + +G+L D +NI L+QT+E+I
Sbjct: 8 KKESILD-LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFI 55
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 17 RPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+ + +KL G+L D +MNIAL+ T E ++ K + G IRGN++L
Sbjct: 17 KKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSIL 70
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 16 GRPVVVKLVSGVDYRGVLSCLDGYMNIAL-EQTEEYINGQLKNKYGDTFIRGNNVLYI 72
G P++V+L +G G L+ D +MN+ L E + G K + ++RGNN+ Y+
Sbjct: 12 GHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVRGNNIKYL 69
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 11 IQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+++ + + +KL G +G+L D +MN+ ++ T E G N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSII 68
Query: 71 YISTQKR 77
+ +R
Sbjct: 69 MLEALER 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 80 80 0.00091 102 3 11 22 0.40 29
29 0.41 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 478 (51 KB)
Total size of DFA: 86 KB (2066 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.85u 0.08s 8.93t Elapsed: 00:00:06
Total cpu time: 8.85u 0.08s 8.93t Elapsed: 00:00:06
Start: Thu Aug 15 11:18:16 2013 End: Thu Aug 15 11:18:22 2013