RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10835
(80 letters)
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Length = 72
Score = 75.1 bits (185), Expect = 1e-20
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+ + PV+V+L G ++RG L D +MN+ L EE NG++ K G IRG+ V
Sbjct: 7 VLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTV 66
Query: 70 LYIS 73
+++S
Sbjct: 67 VFVS 70
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 74
Score = 72.8 bits (179), Expect = 1e-19
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+ PV++KL ++RGVL D +MN+ L EE +G++ + G IRG+N+
Sbjct: 10 ALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNI 69
Query: 70 LYIS 73
+YIS
Sbjct: 70 VYIS 73
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 71
Score = 72.4 bits (178), Expect = 2e-19
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIR 65
+L +Q G+ V+VKL + RG+L D ++N+ LE EE I+G K G +R
Sbjct: 2 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGN-VYKRGTMVVR 60
Query: 66 GNNVLYIS 73
G NVL+IS
Sbjct: 61 GENVLFIS 68
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 72.0 bits (177), Expect = 2e-19
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
I + + V+V L G ++RG L D ++N+ L E +G++ +YG IRG+NV
Sbjct: 6 VIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNV 65
Query: 70 LYIST 74
L IS
Sbjct: 66 LAISP 70
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 70.5 bits (173), Expect = 9e-19
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 4 KESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTF 63
E+ + + + V+VKL + RG+L D +MN+ L +EE + K G
Sbjct: 5 AETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIV 64
Query: 64 IRGNNVLYIS 73
IRG+NV+ IS
Sbjct: 65 IRGDNVILIS 74
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 68
Score = 68.2 bits (167), Expect = 7e-18
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 12 QQIHGRPVVVKL-VSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVL 70
+ + V VKL + +YRG L D Y N+ L + EE++ G G+ FIR NNVL
Sbjct: 2 KGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVL 61
Query: 71 YIS 73
YI
Sbjct: 62 YIR 64
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 67.1 bits (164), Expect = 2e-17
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+ + G V + +G YRG L + MN + + +IRG +
Sbjct: 6 VLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKI 65
Query: 70 LYIS 73
++
Sbjct: 66 RFLI 69
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 67.0 bits (164), Expect = 2e-17
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 7 LSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
L +F+ ++ V ++L +G G ++ +D MN L+ + + + + IRG
Sbjct: 2 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 61
Query: 67 NNVLYIS 73
NN+ Y
Sbjct: 62 NNIRYFI 68
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 64.4 bits (157), Expect = 3e-16
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 8 SQFIQQIHGRPVVVKLVSG-VDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRG 66
+Q ++ + G+ + V++ G L +D YMN+ L E + G+ +RG
Sbjct: 7 NQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRG 66
Query: 67 NNVLYISTQ 75
NNV+ I Q
Sbjct: 67 NNVVLIQPQ 75
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 65.1 bits (159), Expect = 5e-16
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 10 FIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNV 69
+ + GR V V L +G Y+GVL +D +NI L K+ FI +
Sbjct: 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAG----EKFNRVFIMYRYI 59
Query: 70 LYISTQKRR 78
++I + +RR
Sbjct: 60 VHIDSTERR 68
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein
LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Length = 92
Score = 59.5 bits (144), Expect = 4e-14
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 9 QFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI---------------NG 53
I + G + V + ++ GVL D Y+N+ L+ +EY
Sbjct: 8 ALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKR 67
Query: 54 QLKNKYGDTFIRGNNVLYIS 73
+ N+ + GNNV +
Sbjct: 68 VMVNRLETILLSGNNVAMLV 87
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 81
Score = 57.9 bits (140), Expect = 1e-13
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 6 SLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI----------NGQL 55
+ Q I + L G + G D +MN+ L +E+ +
Sbjct: 2 KMLQHI----DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 57
Query: 56 KNKYGDTFIRGNNVLYIS 73
K G +RG N++ ++
Sbjct: 58 KRVLGLVLLRGENLVSMT 75
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 93
Score = 40.3 bits (94), Expect = 1e-06
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYI--------------NGQLKNKYG 60
+ V++ + G + D + N+ LE +E
Sbjct: 13 NNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYIS 72
Query: 61 DTFIRGNNVLYIS 73
F+RG++V+ +
Sbjct: 73 KMFLRGDSVIVVL 85
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 24.8 bits (54), Expect = 1.4
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 15 HGRPVVVKLVSGVDYRGVLSCLDG-YMNIALEQTEEYI--NGQLKNKYGDTFI 64
G V V GV+++ VL L + + + I NG + + D FI
Sbjct: 98 RGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNALDGSIIENGNVATRDVDVFI 150
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 23.2 bits (49), Expect = 4.5
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 3 RKESLSQFIQQIHGRPVVVKLVSGVDYRGVLSCLDGYMNIALEQTEEYINGQLKN 57
RK F++Q +P VKL SG+ ++ + ++ E + G+L++
Sbjct: 12 RKRVGRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRD 66
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 22.9 bits (49), Expect = 5.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 30 RGVLSCLDGYMNIALEQTEEYINGQLKNKYGDTFIRGNNVLYI 72
RG + + Y+N +L + ++I + + D +R N+ +YI
Sbjct: 61 RGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYI 103
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 211
Score = 22.9 bits (49), Expect = 6.0
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 56 KNKYGDTFIRGNNVLYI 72
D +R + +Y+
Sbjct: 73 SQSINDDIVRKEDYIYL 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.389
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,140
Number of extensions: 11312
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 17
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)