Query psy10836
Match_columns 168
No_of_seqs 11 out of 13
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 19:42:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06211 BAMBI: BMP and activi 37.6 22 0.00047 28.1 1.6 27 13-39 26-52 (107)
2 PF06211 BAMBI: BMP and activi 30.6 38 0.00083 26.8 2.0 30 126-155 27-56 (107)
3 PF11520 Cren7: Chromatin prot 21.7 59 0.0013 23.5 1.4 17 151-167 28-44 (60)
4 PF08116 Toxin_29: PhTx neurot 15.5 75 0.0016 20.3 0.7 18 133-150 3-20 (31)
5 PF02988 PLA2_inh: Phospholipa 11.2 3.2E+02 0.0069 20.3 3.1 41 124-164 4-44 (83)
6 COG1310 Predicted metal-depend 10.8 1.5E+02 0.0033 22.0 1.3 14 155-168 65-78 (134)
7 cd08070 MPN_like Mpr1p, Pad1p 8.1 2E+02 0.0044 21.1 1.1 12 157-168 68-79 (128)
8 PF01064 Activin_recp: Activin 6.7 5.9E+02 0.013 17.0 2.8 18 138-156 15-32 (83)
9 smart00380 AP2 DNA-binding dom 6.7 2.2E+02 0.0048 18.9 0.7 14 154-167 20-33 (64)
10 cd08068 MPN_BRCC36 Mov34/MPN/P 6.4 2.9E+02 0.0062 24.0 1.3 17 152-168 82-98 (244)
No 1
>PF06211 BAMBI: BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain; InterPro: IPR009345 This family consists of several eukaryotic BMP and activin membrane-bound inhibitor (BAMBI) proteins. Members of the transforming growth factor-beta (TGF-beta) superfamily, including TGF-beta, bone morphogenetic proteins (BMPs), activins and nodals, are vital for regulating growth and differentiation. BAMBI is related to TGF-beta-family type I receptors but lacks an intracellular kinase domain. BAMBI is co-expressed with the ventralising morphogen BMP4 during Xenopus embryogenesis and requires BMP signalling for its expression. The protein stably associates with TGF-beta-family receptors and inhibits BMP and activin as well as TGF-beta signalling [].
Probab=37.58 E-value=22 Score=28.11 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=19.5
Q ss_pred eeeecCceeeccCceeeccCceeeecC
Q psy10836 13 ACATDGEACATDGETCATDGEACATDG 39 (168)
Q Consensus 13 aC~~dgh~C~~~Gh~C~~dGhaC~~~G 39 (168)
-||.|...|++-|.||.++-.+|+++=
T Consensus 26 RCYCn~P~CV~TGYMCkSel~~CfSkl 52 (107)
T PF06211_consen 26 RCYCNAPHCVATGYMCKSELNACFSKL 52 (107)
T ss_pred EEecCCcceecccceeccccccceeec
Confidence 477777777777777777766776654
No 2
>PF06211 BAMBI: BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain; InterPro: IPR009345 This family consists of several eukaryotic BMP and activin membrane-bound inhibitor (BAMBI) proteins. Members of the transforming growth factor-beta (TGF-beta) superfamily, including TGF-beta, bone morphogenetic proteins (BMPs), activins and nodals, are vital for regulating growth and differentiation. BAMBI is related to TGF-beta-family type I receptors but lacks an intracellular kinase domain. BAMBI is co-expressed with the ventralising morphogen BMP4 during Xenopus embryogenesis and requires BMP signalling for its expression. The protein stably associates with TGF-beta-family receptors and inhibits BMP and activin as well as TGF-beta signalling [].
Probab=30.63 E-value=38 Score=26.76 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=20.5
Q ss_pred EeccCceeeecCceeeecCceeEeeecccc
Q psy10836 126 CHGWGKACATDGEACATDGEACATVPLRIE 155 (168)
Q Consensus 126 C~~~gh~C~~dgh~C~~dg~~C~t~~l~~e 155 (168)
||=+.-.|++-|.||-+.-.+|+|.+|.|.
T Consensus 27 CYCn~P~CV~TGYMCkSel~~CfSklldp~ 56 (107)
T PF06211_consen 27 CYCNAPHCVATGYMCKSELNACFSKLLDPQ 56 (107)
T ss_pred EecCCcceecccceeccccccceeeccCcc
Confidence 556666667777777776667777776553
No 3
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=21.68 E-value=59 Score=23.47 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=10.8
Q ss_pred ecccccccceEEeeccc
Q psy10836 151 PLRIEDRRKILIGTFHD 167 (168)
Q Consensus 151 ~l~~e~r~~~~~~~~~~ 167 (168)
+|||.-|+-+.||.|-+
T Consensus 28 ~L~PkGrkGV~igLFk~ 44 (60)
T PF11520_consen 28 VLQPKGRKGVKIGLFKD 44 (60)
T ss_dssp EE--TTS--EEEEEEE-
T ss_pred EEcCCCCCceEEEEEeC
Confidence 49999999999999965
No 4
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=15.53 E-value=75 Score=20.32 Aligned_cols=18 Identities=33% Similarity=1.008 Sum_probs=10.3
Q ss_pred eeecCceeeecCceeEee
Q psy10836 133 CATDGEACATDGEACATV 150 (168)
Q Consensus 133 C~~dgh~C~~dg~~C~t~ 150 (168)
|-..|+.|-+||+-|+..
T Consensus 3 C~~nGqQCtSDgqCC~G~ 20 (31)
T PF08116_consen 3 CRYNGQQCTSDGQCCNGR 20 (31)
T ss_pred cccCccccCcCCceecch
Confidence 334566666666666543
No 5
>PF02988 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IPR004126 Proteins in this entry inhibit basic phospholipase A2 isozymes in snake's venom [, ].; GO: 0004859 phospholipase inhibitor activity, 0005576 extracellular region
Probab=11.20 E-value=3.2e+02 Score=20.35 Aligned_cols=41 Identities=29% Similarity=0.593 Sum_probs=29.1
Q ss_pred CeEeccCceeeecCceeeecCceeEeeecccccccceEEee
Q psy10836 124 EACHGWGKACATDGEACATDGEACATVPLRIEDRRKILIGT 164 (168)
Q Consensus 124 h~C~~~gh~C~~dgh~C~~dg~~C~t~~l~~e~r~~~~~~~ 164 (168)
++|..+|.-|-..-+-|.+.-..|.++++..-.-|+.+..+
T Consensus 4 EvC~~~G~~C~G~~~tC~~~eDtC~~~~~E~~~~~~s~~~~ 44 (83)
T PF02988_consen 4 EVCHGSGKDCSGKMKTCEDGEDTCVTVVTEVSSAGVSFRTT 44 (83)
T ss_pred ceecCcCCCCCCCeeEcCCCCCEEEEEEEEeccCCeEEEEE
Confidence 46777777777666778888888988887665555555443
No 6
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=10.83 E-value=1.5e+02 Score=22.04 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=11.1
Q ss_pred ccccceEEeecccC
Q psy10836 155 EDRRKILIGTFHDH 168 (168)
Q Consensus 155 e~r~~~~~~~~~~~ 168 (168)
+++...++|.||.|
T Consensus 65 ~~~g~~vvg~yHSH 78 (134)
T COG1310 65 EDAGEVVVGWYHSH 78 (134)
T ss_pred hhCCCEEEEEEcCC
Confidence 45558999999987
No 7
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=8.09 E-value=2e+02 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.5
Q ss_pred ccceEEeecccC
Q psy10836 157 RRKILIGTFHDH 168 (168)
Q Consensus 157 r~~~~~~~~~~~ 168 (168)
+..-+||.||.|
T Consensus 68 ~g~~~vG~~HSH 79 (128)
T cd08070 68 RGLEVVGIYHSH 79 (128)
T ss_pred CCCeEEEEEeCC
Confidence 445889999987
No 8
>PF01064 Activin_recp: Activin types I and II receptor domain; InterPro: IPR000472 Transforming growth factor-beta (TGF-beta) forms a family with other growth factors described in PDOC00223 from PROSITEDOC. The receptors for most of the members of this growth factor family are related. These proteins are receptor-type kinases of Ser/Thr type PDOC00100 from PROSITEDOC), which have a single transmembrane domain and a specific hydrophilic Cys-rich ligand-binding domain [, , ]. The C-terminal part of the extracellular domain is conserved. Some of the receptors of this family contain subclass-specific N-terminal extensions of this homology domain. The type I receptors also possess 7 extracellular residues preceding the cysteine box.; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005024 transforming growth factor beta-activated receptor activity, 0016020 membrane; PDB: 3EVS_C 1BTE_A 1LX5_B 2GOO_C 2HLR_A 4FAO_W 2H64_C 2H62_D 1S4Y_C 1NYU_C ....
Probab=6.73 E-value=5.9e+02 Score=16.97 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=8.7
Q ss_pred ceeeecCceeEeeeccccc
Q psy10836 138 EACATDGEACATVPLRIED 156 (168)
Q Consensus 138 h~C~~dg~~C~t~~l~~e~ 156 (168)
+.|.+ +..|++...+.+.
T Consensus 15 ~~C~t-~~~Cf~~~~~~~~ 32 (83)
T PF01064_consen 15 QTCET-GGFCFTSWEQDNG 32 (83)
T ss_dssp EEEEE-SCEEEEEEEEETT
T ss_pred CEeCC-CCEEEEEEEEeec
Confidence 34444 5555555544443
No 9
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=6.71 E-value=2.2e+02 Score=18.90 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.8
Q ss_pred cccccceEEeeccc
Q psy10836 154 IEDRRKILIGTFHD 167 (168)
Q Consensus 154 ~e~r~~~~~~~~~~ 167 (168)
|..+.+|.+|+|.+
T Consensus 20 ~~~~k~~~lG~f~t 33 (64)
T smart00380 20 PSKGKRVWLGTFDT 33 (64)
T ss_pred cCCCcEEecCCCCC
Confidence 44678899999964
No 10
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=6.39 E-value=2.9e+02 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=0.0
Q ss_pred cccccccceEEeecccC
Q psy10836 152 LRIEDRRKILIGTFHDH 168 (168)
Q Consensus 152 l~~e~r~~~~~~~~~~~ 168 (168)
+....|...+||.||.|
T Consensus 82 ~~~~~rgl~vVGwYHSH 98 (244)
T cd08068 82 TEETGRPMRVVGWYHSH 98 (244)
T ss_pred HhhccCCceEEEEEecC
Done!