Query psy10836
Match_columns 168
No_of_seqs 11 out of 13
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:43:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kxt_A Chromatin protein CREN7 16.5 68 0.0023 21.9 1.8 17 151-167 23-39 (56)
2 3lw5_I PSI-I, photosystem I re 7.9 88 0.003 18.9 0.1 7 1-7 1-7 (30)
3 1za8_A VHL-1; circular protein 6.5 2E+02 0.0069 17.4 1.2 21 3-23 7-27 (31)
4 3mqq_A Transcriptional regulat 5.4 3E+02 0.01 16.7 1.6 18 150-167 95-112 (120)
5 1qjk_A Metallothionein; metal- 4.7 51 0.0018 20.7 -2.3 20 7-26 7-26 (36)
6 3a0s_A Sensor protein; PAS-fol 4.5 5E+02 0.017 13.8 2.1 19 149-167 76-96 (96)
7 1r1f_A Palicourein; cyclotide, 4.4 1.8E+02 0.0062 18.3 0.1 21 4-24 10-34 (37)
8 1gcc_A Ethylene responsive ele 3.4 4.1E+02 0.014 17.2 1.2 10 157-166 25-34 (63)
9 2kcq_A MOV34/MPN/PAD-1 family; 3.1 3.3E+02 0.011 19.6 0.5 13 156-168 73-85 (153)
10 3fc7_A HTR-like protein, senso 3.0 7.2E+02 0.025 14.5 1.9 19 149-167 105-123 (125)
No 1
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=16.48 E-value=68 Score=21.90 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=15.0
Q ss_pred ecccccccceEEeeccc
Q psy10836 151 PLRIEDRRKILIGTFHD 167 (168)
Q Consensus 151 ~l~~e~r~~~~~~~~~~ 167 (168)
+|||.-|+-|.||.|-+
T Consensus 23 vL~P~GrkGVkIgLFk~ 39 (56)
T 3kxt_A 23 ALAPKGRKGVKIGLFKD 39 (56)
T ss_dssp EECCTTSCCEEEEEEEC
T ss_pred EEcCCCCCceEEEEEEC
Confidence 49999999999999964
No 2
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=7.89 E-value=88 Score=18.95 Aligned_cols=7 Identities=57% Similarity=1.118 Sum_probs=4.9
Q ss_pred CCcccee
Q psy10836 1 MFNIPSV 7 (168)
Q Consensus 1 ~~~~~~~ 7 (168)
|||+|++
T Consensus 1 ~~~LPsi 7 (30)
T 3lw5_I 1 MINLPSL 7 (30)
T ss_dssp CCCCCTT
T ss_pred CCCCcch
Confidence 6777765
No 3
>1za8_A VHL-1; circular protein, cyclic cystine knot motif, antiviral protein; NMR {Viola hederacea}
Probab=6.52 E-value=2e+02 Score=17.42 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=10.1
Q ss_pred ccceeeeecceeeecCceeec
Q psy10836 3 NIPSVYTYRTACATDGEACAT 23 (168)
Q Consensus 3 ~~~~~~t~~haC~~dgh~C~~ 23 (168)
-||.+||----|.....+||.
T Consensus 7 ~~p~C~T~~~GCsC~~~vCy~ 27 (31)
T 1za8_A 7 MISFCFTEVIGCSCKNKVCYL 27 (31)
T ss_dssp SSSCCGGGTTTCEEETTEEEB
T ss_pred ecCCcccCCCCcccCCCeeec
Confidence 356556653334444455543
No 4
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=5.39 E-value=3e+02 Score=16.71 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=11.1
Q ss_pred eecccccccceEEeeccc
Q psy10836 150 VPLRIEDRRKILIGTFHD 167 (168)
Q Consensus 150 ~~l~~e~r~~~~~~~~~~ 167 (168)
.|+..+++..-+|++|.|
T Consensus 95 ~~~~~~~~~~~~v~~~~D 112 (120)
T 3mqq_A 95 RALDRTAPLAAGVWTFED 112 (120)
T ss_dssp EESSTTSTTSSEEEEEEE
T ss_pred EECCCCCCceeEEEEEEc
Confidence 345555555667777765
No 5
>1qjk_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=4.72 E-value=51 Score=20.73 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=10.0
Q ss_pred eeeecceeeecCceeeccCc
Q psy10836 7 VYTYRTACATDGEACATDGE 26 (168)
Q Consensus 7 ~~t~~haC~~dgh~C~~~Gh 26 (168)
++++|..|..-|+.|..-|.
T Consensus 7 cc~~gkec~c~g~ecc~tg~ 26 (36)
T 1qjk_A 7 CCTEGKECACFGQDCCVTGE 26 (36)
T ss_dssp HHHHTCCCSSCSSSHHHHCT
T ss_pred EcCCCCCCccCCCceEcccc
Confidence 34445555555555554443
No 6
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=4.52 E-value=5e+02 Score=13.79 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=9.7
Q ss_pred eeeccccccc--ceEEeeccc
Q psy10836 149 TVPLRIEDRR--KILIGTFHD 167 (168)
Q Consensus 149 t~~l~~e~r~--~~~~~~~~~ 167 (168)
..|+..++.. .-++++|.|
T Consensus 76 ~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 76 FSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEECTTTCCEEEEEEEEEC
T ss_pred EEEeEcCCCCeeeEEEEEecC
Confidence 3445444322 346777765
No 7
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=4.44 E-value=1.8e+02 Score=18.34 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=13.3
Q ss_pred ccee-eeecceeeecCce---eecc
Q psy10836 4 IPSV-YTYRTACATDGEA---CATD 24 (168)
Q Consensus 4 ~~~~-~t~~haC~~dgh~---C~~~ 24 (168)
|||+ +|----|....+. ||..
T Consensus 10 iP~Ct~t~~~GCsC~~kv~~~Cy~N 34 (37)
T 1r1f_A 10 IPVCTYSAALGCTCDDRSDGLCKRN 34 (37)
T ss_dssp SCSCSSGGGGTCCBCCSSSCCBCCS
T ss_pred ccccccccccCceEccccChhheec
Confidence 6777 6765566666666 6543
No 8
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=3.43 E-value=4.1e+02 Score=17.17 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=8.4
Q ss_pred ccceEEeecc
Q psy10836 157 RRKILIGTFH 166 (168)
Q Consensus 157 r~~~~~~~~~ 166 (168)
+.+|.+|||-
T Consensus 25 g~r~~LGtf~ 34 (63)
T 1gcc_A 25 GARVWLGTFE 34 (63)
T ss_dssp SEEEEEEEES
T ss_pred CeEEEeeeCC
Confidence 4799999994
No 9
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=3.11 E-value=3.3e+02 Score=19.63 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.6
Q ss_pred cccceEEeecccC
Q psy10836 156 DRRKILIGTFHDH 168 (168)
Q Consensus 156 ~r~~~~~~~~~~~ 168 (168)
+|..-+||.+|.|
T Consensus 73 ~~g~~ivG~yHSH 85 (153)
T 2kcq_A 73 EQGLDVVGVYHSH 85 (153)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HCCCeEEEEEeCC
Confidence 3444789999987
No 10
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=3.00 E-value=7.2e+02 Score=14.49 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=10.5
Q ss_pred eeecccccccceEEeeccc
Q psy10836 149 TVPLRIEDRRKILIGTFHD 167 (168)
Q Consensus 149 t~~l~~e~r~~~~~~~~~~ 167 (168)
.+|+..+....-++++|.|
T Consensus 105 ~~p~~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 105 YIPVDSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEESSTTTTTTEEEEEEEE
T ss_pred EEeEecCCCeEEEEEEEec
Confidence 3445545555556667665
Done!