Query psy10836
Match_columns 168
No_of_seqs 11 out of 13
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 19:43:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9ya_ d.110.3.2 (A:) Direct 5.6 1.5E+02 0.011 16.6 1.9 18 149-167 96-113 (113)
2 d1cyoa_ d.120.1.1 (A:) Cytochr 5.5 77 0.0056 20.0 0.5 10 151-160 78-87 (88)
3 d1qjka_ g.46.1.1 (A:) Metallot 4.9 23 0.0017 20.8 -2.3 18 8-25 8-25 (36)
4 d1mu2a1 c.55.3.1 (A:430-555) H 4.5 1.2E+02 0.0084 19.3 0.8 10 3-12 6-15 (126)
5 d1oi0a_ c.97.3.1 (A:) Hypothet 4.4 1.1E+02 0.0082 20.2 0.7 17 152-168 56-72 (121)
6 d2f69a1 b.76.2.1 (A:116-193) H 4.2 1.6E+02 0.011 19.5 1.4 13 155-167 34-46 (78)
7 d1gcca_ d.10.1.2 (A:) GCC-box 3.4 1.9E+02 0.014 17.5 1.2 11 156-166 24-34 (63)
8 d1ytla1 c.31.1.6 (A:17-174) Ac 3.3 1.7E+02 0.012 19.8 0.9 9 2-10 44-52 (158)
9 d1v04a_ b.68.6.2 (A:) Serum pa 3.3 2.6E+02 0.019 20.8 2.1 18 148-167 316-333 (340)
10 d1uf2c2 b.19.1.1 (C:148-300) R 3.0 2.2E+02 0.016 20.7 1.3 9 156-164 41-49 (153)
No 1
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=5.65 E-value=1.5e+02 Score=16.64 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=11.3
Q ss_pred eeecccccccceEEeeccc
Q psy10836 149 TVPLRIEDRRKILIGTFHD 167 (168)
Q Consensus 149 t~~l~~e~r~~~~~~~~~~ 167 (168)
..||+.+++ ++++++++|
T Consensus 96 ~~~i~~~~~-~~~~~v~rD 113 (113)
T d1v9ya_ 96 LSKVSAEGK-VYYLALVRD 113 (113)
T ss_dssp EEEEEETTE-EEEEEEEEC
T ss_pred EEEEEECCe-EEEEEEEEC
Confidence 345666554 567787776
No 2
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.54 E-value=77 Score=20.03 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=7.3
Q ss_pred ecccccccce
Q psy10836 151 PLRIEDRRKI 160 (168)
Q Consensus 151 ~l~~e~r~~~ 160 (168)
.|+||+|+||
T Consensus 78 ~l~~~~~~~~ 87 (88)
T d1cyoa_ 78 ELHPDDRSKI 87 (88)
T ss_dssp EECGGGGGGC
T ss_pred EECccccCcC
Confidence 4777888776
No 3
>d1qjka_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}
Probab=4.93 E-value=23 Score=20.82 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=7.5
Q ss_pred eeecceeeecCceeeccC
Q psy10836 8 YTYRTACATDGEACATDG 25 (168)
Q Consensus 8 ~t~~haC~~dgh~C~~~G 25 (168)
++.|..|..-|+.|..-|
T Consensus 8 c~egkec~c~gqdcc~tg 25 (36)
T d1qjka_ 8 CTEGKECACFGQDCCVTG 25 (36)
T ss_dssp HHHTCCCSSCSSSHHHHC
T ss_pred ecCCCcCccCCcccCccc
Confidence 334444444444444333
No 4
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=4.48 E-value=1.2e+02 Score=19.32 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=6.7
Q ss_pred ccceeeeecc
Q psy10836 3 NIPSVYTYRT 12 (168)
Q Consensus 3 ~~~~~~t~~h 12 (168)
+.|++||||-
T Consensus 6 ~~~t~YTDGS 15 (126)
T d1mu2a1 6 GAETFYTDGS 15 (126)
T ss_dssp TCEEEEEEEE
T ss_pred CCcEEEEcCC
Confidence 4567777773
No 5
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.40 E-value=1.1e+02 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=9.9
Q ss_pred cccccccceEEeecccC
Q psy10836 152 LRIEDRRKILIGTFHDH 168 (168)
Q Consensus 152 l~~e~r~~~~~~~~~~~ 168 (168)
+.+.++..-++|.||.|
T Consensus 56 ~~~~~~~~~ivgi~HSH 72 (121)
T d1oi0a_ 56 LDMLPIGMKVFGTVHSH 72 (121)
T ss_dssp -----CCCEEEEEEEEE
T ss_pred cchhhcCCeEEEEEEec
Confidence 44556666789999987
No 6
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.22 E-value=1.6e+02 Score=19.51 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=10.6
Q ss_pred ccccceEEeeccc
Q psy10836 155 EDRRKILIGTFHD 167 (168)
Q Consensus 155 e~r~~~~~~~~~~ 167 (168)
.||+-.|+|+|-|
T Consensus 34 PD~~talyGsF~d 46 (78)
T d2f69a1 34 PDERTALYGKFID 46 (78)
T ss_dssp TTSSEEEEEEEET
T ss_pred CCCeEEEEEEeec
Confidence 4788899999965
No 7
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.40 E-value=1.9e+02 Score=17.50 Aligned_cols=11 Identities=27% Similarity=0.758 Sum_probs=8.6
Q ss_pred cccceEEeecc
Q psy10836 156 DRRKILIGTFH 166 (168)
Q Consensus 156 ~r~~~~~~~~~ 166 (168)
++.+|.+|||-
T Consensus 24 ~~~r~~LGtf~ 34 (63)
T d1gcca_ 24 NGARVWLGTFE 34 (63)
T ss_dssp TSEEEEEEEES
T ss_pred CCcEecccccc
Confidence 45679999995
No 8
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.35 E-value=1.7e+02 Score=19.82 Aligned_cols=9 Identities=33% Similarity=0.065 Sum_probs=6.2
Q ss_pred Cccceeeee
Q psy10836 2 FNIPSVYTY 10 (168)
Q Consensus 2 ~~~~~~~t~ 10 (168)
+||||+.|+
T Consensus 44 ~~ipv~~T~ 52 (158)
T d1ytla1 44 KDITVVATG 52 (158)
T ss_dssp SSSEEEEET
T ss_pred hCcCEEecc
Confidence 477777775
No 9
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.30 E-value=2.6e+02 Score=20.77 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=0.0
Q ss_pred EeeecccccccceEEeeccc
Q psy10836 148 ATVPLRIEDRRKILIGTFHD 167 (168)
Q Consensus 148 ~t~~l~~e~r~~~~~~~~~~ 167 (168)
.|+.+ +..-+|+||++++
T Consensus 316 ~T~a~--~~~g~L~iGs~~~ 333 (340)
T d1v04a_ 316 STVAA--VYKGKLLIGTVFH 333 (340)
T ss_dssp EEEEE--EETTEEEEEESSS
T ss_pred eEEEE--EECCEEEEEeeeC
No 10
>d1uf2c2 b.19.1.1 (C:148-300) RDV p8, central (top) domain {Rice dwarf virus [TaxId: 10991]}
Probab=2.98 E-value=2.2e+02 Score=20.73 Aligned_cols=9 Identities=56% Similarity=1.103 Sum_probs=0.0
Q ss_pred cccceEEee
Q psy10836 156 DRRKILIGT 164 (168)
Q Consensus 156 ~r~~~~~~~ 164 (168)
+|.|||+|+
T Consensus 41 Er~ri~fG~ 49 (153)
T d1uf2c2 41 ERRRILFGI 49 (153)
T ss_dssp CSSEEEEEE
T ss_pred ecCeEEEee
Done!