RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10836
         (168 letters)



>gnl|CDD|215512 PLN02950, PLN02950, 4-alpha-glucanotransferase.
          Length = 909

 Score = 29.7 bits (67), Expect = 0.73
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 2   FNIPSVYTYRTACATDGEACAT 23
           F IPS Y+Y T CA     C+T
Sbjct: 783 FGIPSQYSYMTVCAPSCHDCST 804


>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite
           reductase (NirD) family, Rieske domain; composed of
           proteins similar to the Bacillus subtilis small subunit
           of assimilatory nitrite reductase containing a Rieske
           domain. The Rieske domain is a [2Fe-2S] cluster binding
           domain involved in electron transfer. Assimilatory
           nitrate and nitrite reductases convert nitrate through
           nitrite to ammonium.
          Length = 98

 Score = 26.8 bits (60), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 127 HGWGKACATDGEACATDGEACATVPLRIEDRRKILIG 163
           H W       GEA   D     T P+++ED R + +G
Sbjct: 64  HNW-VIDLETGEAQGPDEGCVRTFPVKVEDGR-VYLG 98


>gnl|CDD|190495 pfam02988, PLA2_inh, Phospholipase A2 inhibitor. 
          Length = 83

 Score = 25.9 bits (57), Expect = 4.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 124 EACHGWGKACATDGEACATDGEACATVPLRI 154
           E CH  GK C    E C +  + C TV   +
Sbjct: 4   EICHNLGKDCNGWTEECDSPEDQCGTVLTEV 34


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.129    0.422 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,977,377
Number of extensions: 652642
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 71
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)