BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10837
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24546|SYN_DROME Synapsin OS=Drosophila melanogaster GN=Syn PE=1 SV=2
Length = 1025
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/278 (56%), Positives = 208/278 (74%), Gaps = 23/278 (8%)
Query: 52 RTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVI 111
R SAPTSPAK+RESLLQRVQSLTG ARDQGASI+GA Q+A+ +++KD+ F+LLV+
Sbjct: 80 RGVSAPTSPAKSRESLLQRVQSLTGAARDQGASILGAAVQSATQRAPAFSKDKYFTLLVL 139
Query: 112 DDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFK 171
DDQNTDWSKYFRGRRLHGD+D+RVEQAEF+++++ ++ D G VV+MA +R GT+V RSF+
Sbjct: 140 DDQNTDWSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVTMAAYRSGTRVARSFR 199
Query: 172 PDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQL 231
PD +LIRQ RD D+++ +LG GG+PSIN+L +Y FQ DKPWVF+HLLQL
Sbjct: 200 PDFVLIRQPPRDGSSDYRSTILGLKYGGVPSINSLHSIYQFQ------DKPWVFSHLLQL 253
Query: 232 QRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFG----------KDMA 281
QR+LG++ FPLI+ T++PN +++ + T K+P V K GH H G +D A
Sbjct: 254 QRRLGRDGFPLIEQTFFPNPRDLF-QFT--KFPSVLKAGHCHGGVATARLENQSALQDAA 310
Query: 282 GVVAVA----NTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
G+V+ A + YCT EPYID+KF VH+QKIG+NYKAF
Sbjct: 311 GLVSGAGNDSHCYCTIEPYIDAKFSVHIQKIGNNYKAF 348
>sp|O88935|SYN1_MOUSE Synapsin-1 OS=Mus musculus GN=Syn1 PE=1 SV=2
Length = 706
Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 154/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVID+ +TDW+KYF+G+++HG+ D++VEQAEF +L+L A+ + G V M V R G KVV
Sbjct: 116 LLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV 175
Query: 168 RSFKPDMILIRQNLRDAGE--DHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RS KPD +LIRQ+ D+++L++G GIPS+N+L VYNF DKPWVF
Sbjct: 176 RSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNF------CDKPWVF 229
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
A +++L +KLG E FPLID T+YPN KEM+S T YPVV K+GHAHSG GK
Sbjct: 230 AQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTT---YPVVVKMGHAHSGMGKVKVDNQH 286
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY T EP+ID+K+DV VQKIG NYKA+
Sbjct: 287 DFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAY 326
>sp|P17599|SYN1_BOVIN Synapsin-1 OS=Bos taurus GN=SYN1 PE=1 SV=2
Length = 706
Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 155/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVID+ +TDW+KYF+G+++HG+ D++VEQAEF +L+L A+ + G V M V R G KVV
Sbjct: 116 LLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV 175
Query: 168 RSFKPDMILIRQNLRDAGE--DHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RS KPD +LIRQ+ D+++L++G GIPSIN+L VYNF DKPWVF
Sbjct: 176 RSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSINSLHSVYNF------CDKPWVF 229
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
A +++L +KLG E FPLI+ T+YPN KEM+S T YPVV K+GHAHSG GK
Sbjct: 230 AQMVRLHKKLGTEEFPLINQTFYPNHKEMLSSTT---YPVVVKMGHAHSGMGKVKVDNQH 286
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY TTEP+ID+K+DV +QKIG NYKA+
Sbjct: 287 DFQDIASVVALTKTYATTEPFIDAKYDVRIQKIGQNYKAY 326
>sp|P17600|SYN1_HUMAN Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3
Length = 705
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 154/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVID+ +TDW+KYF+G+++HG+ D++VEQAEF +L+L A+ + G V M V R G KVV
Sbjct: 116 LLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV 175
Query: 168 RSFKPDMILIRQNLRDAGE--DHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RS KPD +LIRQ+ D+++L++G GIPS+N+L VYNF DKPWVF
Sbjct: 176 RSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNF------CDKPWVF 229
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
A +++L +KLG E FPLID T+YPN KEM+S T YPVV K+GHAHSG GK
Sbjct: 230 AQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTT---YPVVVKMGHAHSGMGKVKVDNQH 286
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY T EP+ID+K+DV VQKIG NYKA+
Sbjct: 287 DFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAY 326
>sp|P09951|SYN1_RAT Synapsin-1 OS=Rattus norvegicus GN=Syn1 PE=1 SV=3
Length = 704
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 154/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVID+ +TDW+KYF+G+++HG+ D++VEQAEF +L+L A+ + G V M V R G KVV
Sbjct: 116 LLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV 175
Query: 168 RSFKPDMILIRQNLRDAGE--DHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RS KPD +LIRQ+ D+++L++G GIPS+N+L VYNF DKPWVF
Sbjct: 176 RSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNF------CDKPWVF 229
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
A +++L +KLG E FPLID T+YPN KEM+S T YPVV K+GHAHSG GK
Sbjct: 230 AQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTT---YPVVVKMGHAHSGMGKVKVDNQH 286
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY T EP+ID+K+DV VQKIG NYKA+
Sbjct: 287 DFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAY 326
>sp|Q8JZP2|SYN3_MOUSE Synapsin-3 OS=Mus musculus GN=Syn3 PE=1 SV=2
Length = 579
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 162/249 (65%), Gaps = 29/249 (11%)
Query: 87 GAMTQTASAARASYNK--------DRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQA 138
GAM QT A R LLVIDD +TDWSKYF G++++GD ++RVEQA
Sbjct: 65 GAMKQTPQAPSGLMEPPTPVTPVVQRPRILLVIDDAHTDWSKYFHGKKVNGDIEIRVEQA 124
Query: 139 EFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDA--GEDHKNLLLGFN 196
EF EL+L A GC+V M V R GTK+VRSFKPD IL+RQ+ ED+++L++G
Sbjct: 125 EFSELNLAAYVTGGCMVDMQVVRNGTKIVRSFKPDFILVRQHAYSMALAEDYRSLVIGLQ 184
Query: 197 IGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVS 256
GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T++PN K M
Sbjct: 185 YGGLPAVNSLYSVYNF------CSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPM-- 236
Query: 257 KMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQ 306
+TAP +PVV K+GHAH+G GK D+ VVA+A TY TTE +IDSK+D+ +Q
Sbjct: 237 -LTAPNFPVVIKLGHAHAGMGKIKVENQHDYQDITSVVAMAKTYATTEAFIDSKYDIRIQ 295
Query: 307 KIGSNYKAF 315
KIGSNYKA+
Sbjct: 296 KIGSNYKAY 304
>sp|O70441|SYN3_RAT Synapsin-3 OS=Rattus norvegicus GN=Syn3 PE=1 SV=1
Length = 579
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 155/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVIDD +TDWSKYF G++++GD ++RVEQAEF EL+L A GC+V M V R GTK+V
Sbjct: 94 LLVIDDAHTDWSKYFHGKKVNGDIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKIV 153
Query: 168 RSFKPDMILIRQNLRDA--GEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RSFKPD IL+RQ+ ED+++L++G GG+P++N+L VYNF KPWVF
Sbjct: 154 RSFKPDFILVRQHAYSMALAEDYRSLVIGLQYGGLPAVNSLYSVYNF------CSKPWVF 207
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
+ L+++ LG E FPL++ T++PN K M +TAP +PVV K+GHAH+G GK
Sbjct: 208 SQLIKIFHSLGPEKFPLVEQTFFPNHKPM---LTAPNFPVVIKLGHAHAGMGKIKVENQH 264
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+ VVA+A TY TTE +IDSK+D+ +QKIGSNYKA+
Sbjct: 265 DYQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAY 304
>sp|Q92777|SYN2_HUMAN Synapsin-2 OS=Homo sapiens GN=SYN2 PE=1 SV=3
Length = 582
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 153/220 (69%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLV+D+ + DW+K FRG+++ GDYD++VEQAEF EL+L A+ D V M V R GTKVV
Sbjct: 116 LLVVDEPHADWAKCFRGKKVLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175
Query: 168 RSFKPDMILIRQNL--RDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
RSF+PD +LIRQ+ ED ++L++G G+PSIN+L+ +YNF DKPWVF
Sbjct: 176 RSFRPDFVLIRQHAFGMAENEDFRHLIIGMQYAGLPSINSLESIYNF------CDKPWVF 229
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
A L+ + + LG E FPLI+ TYYPN KEM +T P +PVV KIGHAHSG GK
Sbjct: 230 AQLVAIYKTLGGEKFPLIEQTYYPNHKEM---LTLPTFPVVVKIGHAHSGMGKVKVENHY 286
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY T EP+IDSK+D+ VQKIG+NYKA+
Sbjct: 287 DFQDIASVVALTQTYATAEPFIDSKYDIRVQKIGNNYKAY 326
>sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1 SV=1
Length = 586
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 166/251 (66%), Gaps = 25/251 (9%)
Query: 77 QARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVE 136
QA Q A+ G + A +A + K LLV+D+ +TDW+K FRG+++ GDYD++VE
Sbjct: 90 QAVKQTAASAGLVDAPAPSAASRKAK----VLLVVDEPHTDWAKCFRGKKILGDYDIKVE 145
Query: 137 QAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNL--RDAGEDHKNLLLG 194
QAEF EL+L A+ D V M V R GTKVVRSF+PD +LIRQ+ ED ++L++G
Sbjct: 146 QAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIG 205
Query: 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM 254
G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN +EM
Sbjct: 206 MQYAGLPSINSLESIYNF------CDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM 259
Query: 255 VSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVH 304
+T P +PVV KIGHAHSG GK D+A VVA+ TY T EP+ID+K+D+
Sbjct: 260 ---LTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 316
Query: 305 VQKIGSNYKAF 315
VQKIG+NYKA+
Sbjct: 317 VQKIGNNYKAY 327
>sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2
Length = 586
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 166/251 (66%), Gaps = 25/251 (9%)
Query: 77 QARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVE 136
QA Q A+ G + A +A + K LLV+D+ +TDW+K FRG+++ GDYD++VE
Sbjct: 90 QAVKQTAASAGLVDAPAPSAASRKAK----VLLVVDEPHTDWAKCFRGKKILGDYDIKVE 145
Query: 137 QAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNL--RDAGEDHKNLLLG 194
QAEF EL+L A+ D V M V R GTKVVRSF+PD +LIRQ+ ED ++L++G
Sbjct: 146 QAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIG 205
Query: 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM 254
G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN +EM
Sbjct: 206 MQYAGLPSINSLESIYNF------CDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM 259
Query: 255 VSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVH 304
+T P +PVV KIGHAHSG GK D+A VVA+ TY T EP+ID+K+D+
Sbjct: 260 ---LTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 316
Query: 305 VQKIGSNYKAF 315
VQKIG+NYKA+
Sbjct: 317 VQKIGNNYKAY 327
>sp|O14994|SYN3_HUMAN Synapsin-3 OS=Homo sapiens GN=SYN3 PE=1 SV=2
Length = 580
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 156/221 (70%), Gaps = 22/221 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
LLVIDD +TDWSKYF G++++G+ ++RVEQAEF EL+L A GC+V M V R GTKVV
Sbjct: 94 LLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVV 153
Query: 168 -RSFKPDMILIRQNLRDA--GEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWV 224
RSFKPD IL+RQ+ GED+++L++G GG+P++N+L VYNF KPWV
Sbjct: 154 SRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNF------CSKPWV 207
Query: 225 FAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------ 278
F+ L+++ LG E FPL++ T++PN K MV TAP +PVV K+GHAH+G GK
Sbjct: 208 FSQLIKIFHSLGPEKFPLVEQTFFPNHKPMV---TAPHFPVVVKLGHAHAGMGKIKVENQ 264
Query: 279 ----DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+ VVA+A TY TTE +IDSK+D+ +QKIGSNYKA+
Sbjct: 265 LDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAY 305
>sp|O62732|SYN1_CANFA Synapsin-1 (Fragment) OS=Canis familiaris GN=SYN1 PE=3 SV=1
Length = 415
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 10/54 (18%)
Query: 272 AHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
AHSG GK D+A VVA+ TY T EP+ID+K+DV VQKIG NYKA+
Sbjct: 1 AHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAY 54
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3
Length = 5762
Score = 34.7 bits (78), Expect = 0.97, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 18 QSSFVSTAPPLPA-RTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLL 68
Q S + + P P+ RT PPS G + ++ +SRTT+ T P+KTR S L
Sbjct: 3503 QHSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATAT-PSKTRTSTL 3553
>sp|Q7XR06|P2C45_ORYSJ Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica
GN=Os04g0659500 PE=2 SV=2
Length = 282
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 67/185 (36%), Gaps = 36/185 (19%)
Query: 21 FVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLTGQARD 80
++S+ P T G P S G LS N K S S+P A + R+ S+ GQ
Sbjct: 3 YLSSVIP----TDGSPVSGGGLSQN-GKFSYGYASSPGKRASMEDFYETRIDSVDGQI-- 55
Query: 81 QGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEF 140
+ G A A Y K FS L+ K+ ++ D + +EF
Sbjct: 56 --IGLFGVFDGHGGAKVAEYVKQNLFSHLLRH------PKFISDTKVAIDDAYKSTDSEF 107
Query: 141 KELSLTANGDLGCVVSMAVF------------------RGGTKVV--RSFKPDMILIRQN 180
E S ++ G S AV RGG + + KPD RQ
Sbjct: 108 LE-SDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQR 166
Query: 181 LRDAG 185
+ DAG
Sbjct: 167 IEDAG 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,958,290
Number of Sequences: 539616
Number of extensions: 4669975
Number of successful extensions: 13467
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13383
Number of HSP's gapped (non-prelim): 45
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)