Query psy10837
Match_columns 316
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:44:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3895|consensus 100.0 2E-111 4E-116 813.0 18.0 266 25-315 14-302 (488)
2 PF02078 Synapsin: Synapsin, N 100.0 4.9E-54 1.1E-58 354.1 10.4 102 101-202 2-105 (105)
3 PF02750 Synapsin_C: Synapsin, 100.0 2.2E-53 4.8E-58 383.1 7.3 104 204-316 1-114 (203)
4 TIGR00768 rimK_fam alpha-L-glu 98.3 9.8E-07 2.1E-11 78.5 6.2 127 170-312 47-188 (277)
5 TIGR02144 LysX_arch Lysine bio 98.2 3.7E-06 8.1E-11 75.9 6.7 127 170-312 46-187 (280)
6 PRK10446 ribosomal protein S6 98.0 6.4E-06 1.4E-10 76.5 5.4 126 170-311 56-196 (300)
7 PRK01372 ddl D-alanine--D-alan 97.6 0.00034 7.3E-09 64.3 9.0 128 168-312 53-192 (304)
8 PRK12458 glutathione synthetas 97.5 0.00013 2.9E-09 70.1 4.9 125 171-313 79-226 (338)
9 TIGR01205 D_ala_D_alaTIGR D-al 97.4 0.001 2.2E-08 61.4 9.9 126 170-311 62-204 (315)
10 TIGR01380 glut_syn glutathione 97.3 0.00069 1.5E-08 64.2 7.7 121 171-311 78-216 (312)
11 PRK14570 D-alanyl-alanine synt 97.2 0.0012 2.6E-08 64.4 8.5 126 170-311 86-229 (364)
12 PRK01966 ddl D-alanyl-alanine 97.2 0.002 4.4E-08 61.2 9.2 125 171-311 81-220 (333)
13 PRK14571 D-alanyl-alanine synt 96.8 0.0071 1.5E-07 56.1 9.1 120 171-311 53-183 (299)
14 PRK14568 vanB D-alanine--D-lac 96.5 0.016 3.4E-07 55.4 9.5 124 169-310 88-222 (343)
15 PRK05246 glutathione synthetas 96.5 0.0046 9.9E-08 58.5 5.6 122 171-311 79-217 (316)
16 PLN02941 inositol-tetrakisphos 96.2 0.0071 1.5E-07 59.0 5.4 127 173-314 68-211 (328)
17 PRK14569 D-alanyl-alanine synt 95.8 0.054 1.2E-06 50.8 8.9 122 170-310 55-186 (296)
18 PF08443 RimK: RimK-like ATP-g 95.7 0.0035 7.6E-08 54.9 0.6 79 231-313 10-102 (190)
19 TIGR01142 purT phosphoribosylg 95.5 0.027 5.9E-07 53.4 5.7 121 168-306 59-194 (380)
20 PRK14572 D-alanyl-alanine synt 95.5 0.069 1.5E-06 51.2 8.5 124 170-309 87-227 (347)
21 PRK08463 acetyl-CoA carboxylas 95.3 0.035 7.6E-07 55.7 6.0 129 168-312 70-218 (478)
22 COG0189 RimK Glutathione synth 95.3 0.058 1.3E-06 52.2 7.3 132 168-314 75-221 (318)
23 PRK07178 pyruvate carboxylase 95.0 0.047 1E-06 54.7 6.0 128 168-311 70-216 (472)
24 TIGR00514 accC acetyl-CoA carb 94.8 0.056 1.2E-06 53.3 5.8 127 168-310 71-216 (449)
25 PF10581 Synapsin_N: Synapsin 94.7 0.013 2.8E-07 39.9 0.8 14 25-48 14-27 (32)
26 PRK08591 acetyl-CoA carboxylas 94.3 0.095 2.1E-06 51.4 6.1 127 168-310 71-216 (451)
27 PRK09288 purT phosphoribosylgl 94.2 0.084 1.8E-06 50.4 5.4 123 169-308 73-209 (395)
28 PRK05294 carB carbamoyl phosph 94.0 0.077 1.7E-06 58.5 5.4 128 165-309 623-765 (1066)
29 PRK08654 pyruvate carboxylase 93.9 0.11 2.3E-06 53.0 5.7 129 168-312 71-218 (499)
30 PRK12833 acetyl-CoA carboxylas 93.9 0.13 2.9E-06 51.4 6.3 129 168-312 74-221 (467)
31 TIGR01161 purK phosphoribosyla 93.8 0.13 2.8E-06 48.9 5.9 103 193-308 77-188 (352)
32 PRK08462 biotin carboxylase; V 93.3 0.23 4.9E-06 48.9 6.7 127 168-310 73-218 (445)
33 PLN02948 phosphoribosylaminoim 93.0 0.22 4.7E-06 51.9 6.4 104 192-308 99-213 (577)
34 PRK02471 bifunctional glutamat 92.9 0.16 3.5E-06 54.6 5.5 100 198-311 472-585 (752)
35 TIGR01235 pyruv_carbox pyruvat 92.8 0.24 5.3E-06 55.7 6.8 129 168-312 71-218 (1143)
36 PRK05586 biotin carboxylase; V 92.6 0.26 5.7E-06 48.7 6.1 109 189-310 89-216 (447)
37 PRK13790 phosphoribosylamine-- 92.6 0.25 5.4E-06 48.2 5.9 126 168-310 24-163 (379)
38 PRK12999 pyruvate carboxylase; 92.2 0.21 4.6E-06 56.0 5.5 128 168-311 75-221 (1146)
39 PRK14573 bifunctional D-alanyl 92.2 0.58 1.3E-05 50.0 8.4 127 170-311 525-669 (809)
40 PRK13789 phosphoribosylamine-- 92.0 0.47 1E-05 47.4 7.1 114 167-299 64-196 (426)
41 PRK06111 acetyl-CoA carboxylas 91.9 0.36 7.9E-06 47.1 6.1 125 168-308 71-214 (450)
42 PRK12767 carbamoyl phosphate s 91.7 0.42 9.1E-06 44.3 6.1 121 167-305 65-198 (326)
43 TIGR01369 CPSaseII_lrg carbamo 91.2 0.3 6.5E-06 54.0 5.3 128 166-310 624-766 (1050)
44 PRK02186 argininosuccinate lya 90.4 0.55 1.2E-05 50.9 6.2 96 196-305 90-197 (887)
45 PRK00885 phosphoribosylamine-- 90.3 0.57 1.2E-05 45.8 5.8 123 168-308 59-198 (420)
46 PRK06019 phosphoribosylaminoim 90.0 0.52 1.1E-05 45.6 5.2 96 200-308 86-190 (372)
47 PRK07206 hypothetical protein; 89.5 0.61 1.3E-05 45.0 5.2 119 167-304 66-206 (416)
48 PLN02257 phosphoribosylamine-- 88.8 0.82 1.8E-05 45.9 5.7 125 168-310 59-200 (434)
49 PRK14016 cyanophycin synthetas 88.8 0.6 1.3E-05 49.9 5.0 102 195-311 196-308 (727)
50 TIGR02068 cya_phycin_syn cyano 88.7 0.61 1.3E-05 50.7 5.1 100 198-311 197-307 (864)
51 TIGR01435 glu_cys_lig_rel glut 88.4 0.7 1.5E-05 50.0 5.2 100 198-311 459-572 (737)
52 PRK12815 carB carbamoyl phosph 88.2 0.79 1.7E-05 50.9 5.6 124 165-305 624-759 (1068)
53 PF13535 ATP-grasp_4: ATP-gras 88.2 0.54 1.2E-05 39.1 3.4 76 228-306 8-98 (184)
54 TIGR03103 trio_acet_GNAT GNAT- 88.1 0.78 1.7E-05 47.5 5.1 98 199-311 282-390 (547)
55 TIGR00877 purD phosphoribosyla 88.0 0.92 2E-05 44.1 5.3 123 168-308 61-200 (423)
56 COG0439 AccC Biotin carboxylas 83.7 0.99 2.1E-05 46.3 3.3 102 198-312 98-218 (449)
57 TIGR02712 urea_carbox urea car 83.5 2.3 4.9E-05 48.3 6.3 127 168-310 70-214 (1201)
58 PLN02735 carbamoyl-phosphate s 75.9 3.5 7.5E-05 46.4 4.6 94 204-310 692-797 (1102)
59 PF02786 CPSase_L_D2: Carbamoy 74.5 2.6 5.7E-05 38.5 2.7 84 227-313 4-105 (211)
60 PRK06524 biotin carboxylase-li 73.7 4.9 0.00011 41.9 4.7 91 195-298 122-226 (493)
61 TIGR01369 CPSaseII_lrg carbamo 72.9 4.5 9.8E-05 45.0 4.6 120 165-300 75-212 (1050)
62 PLN02735 carbamoyl-phosphate s 70.5 6.4 0.00014 44.4 5.1 123 167-305 94-237 (1102)
63 PRK05294 carB carbamoyl phosph 69.0 7 0.00015 43.6 4.9 118 166-299 77-212 (1066)
64 PRK12815 carB carbamoyl phosph 66.1 8.4 0.00018 43.1 4.8 119 167-300 78-213 (1068)
65 COG1181 DdlA D-alanine-D-alani 65.1 36 0.00079 33.3 8.5 127 170-312 60-201 (317)
66 KOG1742|consensus 64.4 9.4 0.0002 34.3 3.9 55 212-271 67-127 (147)
67 PRK06849 hypothetical protein; 63.6 8.2 0.00018 37.3 3.7 62 203-278 105-168 (389)
68 PRK05784 phosphoribosylamine-- 62.9 11 0.00023 38.8 4.6 91 168-278 66-160 (486)
69 KOG0238|consensus 60.6 9.4 0.0002 40.8 3.7 113 184-312 83-214 (670)
70 PF02222 ATP-grasp: ATP-grasp 59.7 6.7 0.00015 35.0 2.2 73 233-308 2-83 (172)
71 PF07478 Dala_Dala_lig_C: D-al 54.1 15 0.00034 33.1 3.6 50 260-310 31-90 (203)
72 COG4770 Acetyl/propionyl-CoA c 52.5 22 0.00048 38.3 4.9 114 183-312 86-218 (645)
73 PRK13278 purP 5-formaminoimida 51.4 47 0.001 33.1 6.8 86 197-304 106-207 (358)
74 PRK06395 phosphoribosylamine-- 36.1 39 0.00085 34.0 3.6 128 167-311 61-205 (435)
75 COG0078 ArgF Ornithine carbamo 34.5 48 0.0011 33.0 3.9 69 169-254 97-165 (310)
76 KOG2156|consensus 33.3 35 0.00076 36.7 2.8 84 220-306 262-358 (662)
77 PF03133 TTL: Tubulin-tyrosine 32.6 34 0.00074 31.7 2.4 43 264-307 67-124 (292)
78 COG1038 PycA Pyruvate carboxyl 29.1 82 0.0018 35.8 4.8 101 196-312 102-224 (1149)
79 KOG2635|consensus 28.8 88 0.0019 33.0 4.7 40 106-145 276-318 (512)
80 PRK06393 rpoE DNA-directed RNA 27.7 64 0.0014 25.4 2.8 29 108-137 35-64 (64)
81 PRK00696 sucC succinyl-CoA syn 26.6 83 0.0018 30.9 4.0 41 227-270 7-48 (388)
82 TIGR01016 sucCoAbeta succinyl- 25.6 84 0.0018 30.9 3.8 49 227-278 7-56 (386)
83 PF14302 DUF4377: Domain of un 24.1 1.1E+02 0.0023 24.3 3.5 35 104-140 18-59 (80)
84 COG3567 Uncharacterized protei 23.3 19 0.0004 37.2 -1.1 39 2-40 283-321 (452)
85 PF10179 DUF2369: Uncharacteri 22.6 4.7E+02 0.01 26.0 8.3 60 98-169 60-121 (300)
86 PF05770 Ins134_P3_kin: Inosit 21.2 1E+02 0.0022 30.5 3.4 84 186-275 63-151 (307)
87 PF14343 PrcB_C: PrcB C-termin 20.3 1.3E+02 0.0028 22.3 3.1 22 121-142 6-27 (60)
88 PF12852 Cupin_6: Cupin 20.2 1.9E+02 0.004 25.0 4.5 51 126-181 21-71 (186)
No 1
>KOG3895|consensus
Probab=100.00 E-value=2e-111 Score=813.04 Aligned_cols=266 Identities=51% Similarity=0.916 Sum_probs=248.7
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCccccchhhhhhccccccccccccchhhhhhhh----cc------c
Q psy10837 25 APPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQ----TA------S 94 (316)
Q Consensus 25 ~~~lp~~~~~~~~~~~~~sl~l~~~~~~~tSaPtSPA~~r~s~~q~~~~~t~~~~~~gss~~ss~~~----ta------~ 94 (316)
+|||||||| .|||| +..+.|+|+||+++|+++. +..+.++.|+++|++.++ |+ .
T Consensus 14 manlpngym----------tdlqr-p~~~~Sspasp~~e~~~pa-----~~~~~~s~gs~~fssls~a~kqt~Aa~~~~~ 77 (488)
T KOG3895|consen 14 MANLPNGYM----------TDLQR-PDPSASSPASPAMERRHPA-----LPAPFSSPGSSFFSSLSSAVKQTQATAGLME 77 (488)
T ss_pred hhcCCcccc----------ccccC-CCCCCCCCCCcccccCCcc-----ccCCCCCCCccccccchHHHHHHHHHhhccc
Confidence 899999999 59999 8889999999999999754 335556678888877763 22 1
Q ss_pred ccccccCcCcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeee-eeeecc
Q psy10837 95 AARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV-RSFKPD 173 (316)
Q Consensus 95 ~~~p~~~~~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvv-RsfkPD 173 (316)
+..+.+..++.|+||||||+|+||+|||||||+||||+||||||||+||||+||+++||+|||+|.|||+|++ |+|+||
T Consensus 78 ~~~~~p~~~rakVLLVID~~H~DWsKyFrgkkvhgey~IrVEQaefseLnl~a~~~g~~~vdm~V~rNg~kvv~RsfkPd 157 (488)
T KOG3895|consen 78 PPGPTPIAKRAKVLLVIDEPHTDWSKYFRGKKVHGEYDIRVEQAEFSELNLVAHAKGGCMVDMQVLRNGTKVVVRSFKPD 157 (488)
T ss_pred CCCCCcccccceEEEEecCCcccHHHHhcCCccccceEEEeeecccchheeeeeccCceeEEEEEEecCcceeeeeccCC
Confidence 2344666778999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EEEEecccc--ccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCC
Q psy10837 174 MILIRQNLR--DAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 251 (316)
Q Consensus 174 FVLiRq~a~--~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~ 251 (316)
||||||||. ..+||||+|++||+|||||++|||+|+|||| ||||||+||++|.++||+|+||||||||||||
T Consensus 158 fVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFc------dkpwvf~Qlvki~~slG~e~fPli~qt~yPnH 231 (488)
T KOG3895|consen 158 FVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFC------DKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH 231 (488)
T ss_pred EEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHHhc------cchHHHHHHHHHHHhcCccccccceeeecCCc
Confidence 999999995 5899999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cccccccCCCCCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccceeeeeccccccccC
Q psy10837 252 KEMVSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315 (316)
Q Consensus 252 ~~m~~k~~~~~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYDIriQKIG~~YKay 315 (316)
|+| ++.++||||||+||||+|||| ||+|||||++||+|+|||||+||||||||||+|||||
T Consensus 232 K~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 KEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAY 302 (488)
T ss_pred hhh---ccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHH
Confidence 999 899999999999999999999 9999999999999999999999999999999999998
No 2
>PF02078 Synapsin: Synapsin, N-terminal domain; InterPro: IPR020897 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents the pre-ATP-grasp structural domain found in synapsins, which precedes the ATP-grasp domain. The structure of the pre-ATP-grasp domain consists of alpha/beta/alpha in three layers, and is possibly a rudiment form of the Rossmann-fold. This domain can have a substrate-binding function.; GO: 0007269 neurotransmitter secretion, 0008021 synaptic vesicle; PDB: 1PX2_A 1PK8_F 2P0A_A 1AUV_B 1AUX_A 1I7N_A 1I7L_A.
Probab=100.00 E-value=4.9e-54 Score=354.11 Aligned_cols=102 Identities=66% Similarity=1.163 Sum_probs=84.3
Q ss_pred CcCcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeeeeeeeccEEEEecc
Q psy10837 101 NKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQN 180 (316)
Q Consensus 101 ~~~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvvRsfkPDFVLiRq~ 180 (316)
+++|+|+||||||+||||+|||||||+||||+||||||||+||+|+||+++||+|||+++|||+|++|||||||||||||
T Consensus 2 ~~~~~k~LLVIdd~~tDW~KyFrGkki~Ge~dIrVEQAeFsei~L~a~s~~g~~Vd~~~~r~g~Kv~RsfkPDFvLiRQh 81 (105)
T PF02078_consen 2 NKDKCKTLLVIDDPQTDWSKYFRGKKIHGEYDIRVEQAEFSEINLVAHSDGGCTVDMQVLRNGTKVVRSFKPDFVLIRQH 81 (105)
T ss_dssp ----EEEEEEES-TTS-HHHHCTT-EETTTEEEEEEEE-GGGEEEEEETTS-EEEEEEEEETTCEEEEEE--SEEEE-S-
T ss_pred CcccceEEEEECCCCccHHHHhcCCccCCceEEEEEEeeeeEEEEEEEcCCCEEEEEEeeeCCceeeecccCcEEEEccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--cCCCchhhhhhhhcCCCCC
Q psy10837 181 LRD--AGEDHKNLLLGFNIGGIPS 202 (316)
Q Consensus 181 a~~--~~~D~rniliGl~y~GIPs 202 (316)
+++ +++||||+||||+||||||
T Consensus 82 ~~~~~~~~D~r~lliGL~yggiPS 105 (105)
T PF02078_consen 82 ARSMAQNEDFRNLLIGLQYGGIPS 105 (105)
T ss_dssp SBESSTTEB-HHHHHHHHHTT--E
T ss_pred ccccccccchhheeeeeeecCCCC
Confidence 986 5799999999999999997
No 3
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=100.00 E-value=2.2e-53 Score=383.13 Aligned_cols=104 Identities=60% Similarity=1.193 Sum_probs=91.9
Q ss_pred CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-----
Q psy10837 204 NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK----- 278 (316)
Q Consensus 204 NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK----- 278 (316)
|||+|+|||| ||||||+||++|+++||+|+||||||||||||+|| +++|+||+|||+||+|+|+||
T Consensus 1 NSL~Siynf~------dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n 71 (203)
T PF02750_consen 1 NSLHSIYNFC------DKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDN 71 (203)
T ss_dssp S-HHHHHHTT------SHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-S
T ss_pred Ccccchhhhc------CCcHHHHHHHHHHHHhCCcccccceeeecCChhhh---ccCCCCCEEEEEccccCceeEEEEcc
Confidence 9999999999 99999999999999999999999999999999999 899999999999999999999
Q ss_pred -----chhhhhhhcceeeeecccccccceeeeeccccccccCC
Q psy10837 279 -----DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ 316 (316)
Q Consensus 279 -----Diasvva~~~tY~TtEPfId~kYDIriQKIG~~YKay~ 316 (316)
|++||||++++|+|+|||||+||||||||||+|||||.
T Consensus 72 ~~~~qDi~sll~~~~~Y~T~EPfId~kyDirvqkIG~~ykA~~ 114 (203)
T PF02750_consen 72 QQDFQDIASLLAITKDYATTEPFIDAKYDIRVQKIGNNYKAYM 114 (203)
T ss_dssp HHHHHHHHHHHHHHTS-EEEEE---EEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCceEEeeccccceeEEEEEEEcCeEEEEE
Confidence 99999999999999999999999999999999999984
No 4
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.32 E-value=9.8e-07 Score=78.51 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=84.9
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
-.||+|+.|.. ....-..++.-+...|+|.+|+.+++..+. ||-+.+..| +++| +|.-+-....
T Consensus 47 ~~~d~v~~r~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~------dK~~~~~~l----~~~g---i~~P~t~~~~ 110 (277)
T TIGR00768 47 AELDVVIVRIV---SMFRGLAVARYLESLGVPVINSSDAILNAG------DKFLTSQLL----AKAG---LPQPRTGLAG 110 (277)
T ss_pred CCCCEEEEech---hHhhHHHHHHHHHHCCCeeeCCHHHHHHHh------hHHHHHHHH----HHCC---CCCCCEEEeC
Confidence 46999999982 112223566667778999999999999988 998544444 3567 7765443444
Q ss_pred CCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---c---eeeeeccccccc--ceeeeecccccc
Q psy10837 250 NFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---N---TYCTTEPYIDSK--FDVHVQKIGSNY 312 (316)
Q Consensus 250 n~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~---tY~TtEPfId~k--YDIriQKIG~~Y 312 (316)
+..+....+..-.||+|||+-.+++|.|- |+..+++.. . ..+-.|+||+.. +|+|+.-+|+++
T Consensus 111 ~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~ 188 (277)
T TIGR00768 111 SPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEV 188 (277)
T ss_pred CHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEE
Confidence 43322111234469999999888888776 554444221 1 257899999953 699998888754
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.18 E-value=3.7e-06 Score=75.87 Aligned_cols=127 Identities=20% Similarity=0.168 Sum_probs=82.9
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
.++|+|++|... +.....+..-+...|+|.+|+.+++-.+. ||-.. .++.+++| +|..+-....
T Consensus 46 ~~~d~v~~r~~~---~~~~~~~~~~le~~g~~~~n~~~~~~~~~------dK~~~----~~~l~~~g---ip~P~t~~~~ 109 (280)
T TIGR02144 46 EDVDVAIIRCVS---QSRALYSARLLEALGVPVINSSHVIEACG------DKIFT----YLKLAKAG---VPTPRTYLAF 109 (280)
T ss_pred CCCCEEEEcCcc---hhhHHHHHHHHHHCCCcEECcHHHHHHHh------hHHHH----HHHHHHCC---cCCCCeEeeC
Confidence 478999999422 11223444456778999999999999988 88733 23344677 8875444444
Q ss_pred CCcccccccCCCCCcEEEeeccccccCcc-------chhhhh----hhc---ceeeeecccccc-cceeeeecccccc
Q psy10837 250 NFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVV----AVA---NTYCTTEPYIDS-KFDVHVQKIGSNY 312 (316)
Q Consensus 250 n~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvv----a~~---~tY~TtEPfId~-kYDIriQKIG~~Y 312 (316)
+..+.......-.||+|||+-.+++|.|- ++...+ ++. ...+-.|+||+. .+|+|+--||+.+
T Consensus 110 ~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~ 187 (280)
T TIGR02144 110 DREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEA 187 (280)
T ss_pred CHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEE
Confidence 44333111224579999999888777665 343332 121 135899999996 6999999888754
No 6
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.04 E-value=6.4e-06 Score=76.52 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=84.3
Q ss_pred eeccEEEEecccc--ccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 170 FKPDMILIRQNLR--DAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 170 fkPDFVLiRq~a~--~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
.++|+|++|.|.. ..+++. +.-|...|++.+|+..++..+. ||- ...++.++.| +|.-+-.+
T Consensus 56 ~~~d~v~~~~~~~~~~~~~~~---~~~le~~g~~v~n~~~a~~~~~------dK~----~~~~~l~~~g---ip~P~t~~ 119 (300)
T PRK10446 56 PHFDAVIPRIGTAITFYGTAA---LRQFEMLGSYPLNESVAIARAR------DKL----RSMQLLARQG---IDLPVTGI 119 (300)
T ss_pred CCCCEEEEcCCCchhhHHHHH---HHHHHHCCCceecCHHHHHhhh------cHH----HHHHHHHHcC---CCCCCEEE
Confidence 4899999998862 122222 3456677899999999999999 998 4444445677 77654333
Q ss_pred cCCCcccccccCC-CCCcEEEeeccccccCcc-------chhhhhhh---cceeeeeccccc--ccceeeeeccccc
Q psy10837 248 YPNFKEMVSKMTA-PKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYID--SKFDVHVQKIGSN 311 (316)
Q Consensus 248 ypn~~~m~~k~~~-~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId--~kYDIriQKIG~~ 311 (316)
..+..+....+.. ..||+|||+=++++|.|- |+..++.. .+..+..|+||+ ..+|+||.=+|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 120 AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCE
Confidence 3333322110111 268999999888888886 44444432 235689999998 5799999988864
No 7
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=97.59 E-value=0.00034 Score=64.27 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=84.0
Q ss_pred eeeeccEEEEecccc-ccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceee
Q psy10837 168 RSFKPDMILIRQNLR-DAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDI 245 (316)
Q Consensus 168 RsfkPDFVLiRq~a~-~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Q 245 (316)
+..++|+|+.+-+.. ..+.... --+...|||.+|+ ..++..+. ||-+. .++.+++| +|..+-
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~---~~le~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---Ip~p~~ 116 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQ---GLLELLGIPYTGSGVLASALAM------DKLRT----KLVWQAAG---LPTPPW 116 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHH---HHHHHcCCCccCCCHHHHHHHh------CHHHH----HHHHHHCC---CCCCCE
Confidence 345899999996543 2222222 2345669999986 78888877 88843 33445778 887776
Q ss_pred eecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeecccccc
Q psy10837 246 TYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 246 t~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
..+.+..+.......-.||+|||+=...+|.|- |+...+... ...+-.|+||+ -++++|.-||+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~-G~E~~v~vi~~~~ 192 (304)
T PRK01372 117 IVLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK-GRELTVAVLGGKA 192 (304)
T ss_pred EEEeCcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC-CEEEEEEEECCCc
Confidence 666665443222335589999999777777665 444443221 34588999999 5788888887643
No 8
>PRK12458 glutathione synthetase; Provisional
Probab=97.47 E-value=0.00013 Score=70.13 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=81.2
Q ss_pred eccEEEEeccccccCCCchhhhhhh--------hcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccc
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGF--------NIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPL 242 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl--------~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPL 242 (316)
.+|.|++|+... .+.+|.+.+.-+ ...|++.+|+.+++.++. ||.+. ..|.+ +.
T Consensus 79 ~~d~V~~R~~~~-~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~------dK~~~-~~l~~----------~~ 140 (338)
T PRK12458 79 GFDVIFLRANPP-LDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIAN------NKLYF-QSFPE----------EV 140 (338)
T ss_pred hCCEEEEeCCCC-CChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhcc------CHHHH-Hhhcc----------CC
Confidence 468888888653 233366666522 346899999999999999 99843 22222 35
Q ss_pred eeeeecCCCcccccc-cCCC-CCcEEEeeccccccCcc------c---hhhhhh-hc-ceeeeeccccc--ccceeeeec
Q psy10837 243 IDITYYPNFKEMVSK-MTAP-KYPVVFKIGHAHSGFGK------D---MAGVVA-VA-NTYCTTEPYID--SKFDVHVQK 307 (316)
Q Consensus 243 I~Qt~ypn~~~m~~k-~~~~-~fPvVVKvGhaH~G~GK------D---iasvva-~~-~tY~TtEPfId--~kYDIriQK 307 (316)
++.|+..+..+.+.. +..- ..|+|||+=.+++|.|- | +.+++. ++ ..++..+|||+ ..+|+||--
T Consensus 141 vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~v 220 (338)
T PRK12458 141 RPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILL 220 (338)
T ss_pred CCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEE
Confidence 777766654432211 1112 23599999777777775 3 334442 21 45788999998 469999999
Q ss_pred cccccc
Q psy10837 308 IGSNYK 313 (316)
Q Consensus 308 IG~~YK 313 (316)
||+.+-
T Consensus 221 v~g~~v 226 (338)
T PRK12458 221 LNGEPL 226 (338)
T ss_pred ECCEEE
Confidence 988653
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.43 E-value=0.001 Score=61.37 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=82.8
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+..-|-. .++| ..+---+...|+|.+|+ .+++..+. ||.+ +.++.++.| +|..+....
T Consensus 62 ~~~D~v~~~~~g~-~~~~-~~~~~~le~~gip~~g~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~~~~~ 126 (315)
T TIGR01205 62 EGIDVVFPVLHGR-YGED-GTIQGLLELMGIPYTGSGVLASALSM------DKLL----TKLLWKALG---LPTPDYIVL 126 (315)
T ss_pred CCCCEEEEecCCC-CCCC-cHHHHHHHHcCCCccCCCHHHHHHHH------CHHH----HHHHHHHCC---CCCCCEEEE
Confidence 4689999876544 2333 23444567779999996 88999888 9984 344445778 887665555
Q ss_pred C-CCcccc----cc-cCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 249 P-NFKEMV----SK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 p-n~~~m~----~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
. +..+.. .+ ...-.||+|||+-..++|.|= |+...+.. ....+-.|+||+ -++++|.-||++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~-G~e~~v~vi~~~ 204 (315)
T TIGR01205 127 TQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK-GRELEVSILGNE 204 (315)
T ss_pred ecccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC-CEEEEEEEECCC
Confidence 4 322110 00 124579999999888888774 33333322 234589999998 679999999854
No 10
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.33 E-value=0.00069 Score=64.20 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=80.8
Q ss_pred eccEEEEeccccccCCCc---hhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 171 KPDMILIRQNLRDAGEDH---KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~---rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
..|.|++|...- -+..| -.++.-+.-.|++.+|+..++.++. ||.+... + +. .++.|+
T Consensus 78 ~~D~v~~R~~~~-~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~------dK~~~~~----~---~~-----~vP~T~ 138 (312)
T TIGR01380 78 ELDAVLMRKDPP-FDMEYIYATYLLELADPTGTLVINSPQGLRDAN------EKLFTLQ----F---PK-----VIPPTL 138 (312)
T ss_pred cCCEEEEeCCCC-CChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhh------hHHHHhh----C---cC-----CCCCEE
Confidence 689999998662 22333 3466666778999999999999999 9986432 1 11 367787
Q ss_pred cCCCccccccc-CCCCCcEEEeeccccccCcc------c--hhhhh----hhcceeeeecccccc--cceeeeeccccc
Q psy10837 248 YPNFKEMVSKM-TAPKYPVVFKIGHAHSGFGK------D--MAGVV----AVANTYCTTEPYIDS--KFDVHVQKIGSN 311 (316)
Q Consensus 248 ypn~~~m~~k~-~~~~fPvVVKvGhaH~G~GK------D--iasvv----a~~~tY~TtEPfId~--kYDIriQKIG~~ 311 (316)
..+-.+-+.++ ..-. |+|+|+=.+++|-|- | ...++ .+....+..++||+. ..|+||-=||+.
T Consensus 139 v~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~ 216 (312)
T TIGR01380 139 VTRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGE 216 (312)
T ss_pred EeCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCe
Confidence 76433221111 1223 899999888888655 2 22222 223457889999984 599999988875
No 11
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.24 E-value=0.0012 Score=64.37 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=85.6
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCch-hhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTL-QGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL-~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.--|-. .+|| ..+---|...|||.+||= .+...+. ||- + ..++.++.| +|..+...+
T Consensus 86 ~~~D~vf~~lhG~-~GEd-g~iqglle~~giPy~Gs~~~asal~~------DK~-~---tK~~l~~~G---Ipt~p~~~~ 150 (364)
T PRK14570 86 LEIDVVFPIVHGR-TGED-GAIQGFLKVMDIPCVGAGILGSAISI------NKY-F---CKLLLKSFN---IPLVPFIGF 150 (364)
T ss_pred cCCCEEEEcCCCC-CCCc-CHHHHHHHHcCCCccCCCHHHHHHHH------CHH-H---HHHHHHHcC---CCCCCEEEE
Confidence 3699999988865 5676 566667889999999965 5777778 876 3 334444778 787765444
Q ss_pred CCC------ccccccc-CCCCCcEEEeeccccccCcc-------chhhhhhhcc---eeeeecccccccceeeeeccccc
Q psy10837 249 PNF------KEMVSKM-TAPKYPVVFKIGHAHSGFGK-------DMAGVVAVAN---TYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 pn~------~~m~~k~-~~~~fPvVVKvGhaH~G~GK-------Diasvva~~~---tY~TtEPfId~kYDIriQKIG~~ 311 (316)
.+. .+....+ ..-.||+|||+-+..+++|= |+...+.-+. ..+-+|+||+ -.+|+|.-||+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 151 RKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred eccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC-CEEEEEEEECCC
Confidence 321 1110001 23579999999777777775 5555543322 4488999999 579999999863
No 12
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.19 E-value=0.002 Score=61.17 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=84.8
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+.--|-. .+|| ..+---+...|||.+++ ..+...+. ||-+ +.++.+++| +|..+.....
T Consensus 81 ~~D~vf~~lhG~-~ged-g~iq~lle~~gipy~G~~~~a~~l~~------DK~~----~k~~l~~~G---Ip~p~~~~~~ 145 (333)
T PRK01966 81 EVDVVFPVLHGP-PGED-GTIQGLLELLGIPYVGCGVLASALSM------DKIL----TKRLLAAAG---IPVAPYVVLT 145 (333)
T ss_pred cCCEEEEccCCC-CCCC-cHHHHHHHHcCCCccCCCHHHHHHHh------CHHH----HHHHHHHcC---CCCCCEEEEe
Confidence 799999877654 3455 22344456789999875 66777778 9984 444555777 8887776665
Q ss_pred CCccc---ccc-cCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 250 NFKEM---VSK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 250 n~~~m---~~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
+..+. +.+ .....||+|||+-...++.|= |+...+.. ....+-.|+||+- .+++|.-+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~G-~E~~v~vl~~~ 220 (333)
T PRK01966 146 RGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIKG-REIECAVLGND 220 (333)
T ss_pred ccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcCC-EEEEEEEECCC
Confidence 54331 000 234579999999888888775 44444432 2356899999995 78888888853
No 13
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=96.82 E-value=0.0071 Score=56.10 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=77.9
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+.+-|-. .++| ..+---+...|+|.+++ ..++..+. ||-+. .++++ . | +|.-+...+.
T Consensus 53 ~~D~v~~~~~g~-~ge~-~~~~~~le~~gip~~G~~~~a~~i~~------DK~~~-k~~l~---~-~---ip~p~~~~~~ 116 (299)
T PRK14571 53 SFDVVFNVLHGT-FGED-GTLQAILDFLGIRYTGSDAFSSMICF------DKLLT-YRFLK---G-T---VEIPDFVEIK 116 (299)
T ss_pred CCCEEEEeCCCC-CCCc-cHHHHHHHHcCCCccCCCHHHHHHHc------CHHHH-HHHHh---c-C---CCCCCEEEEe
Confidence 589999998764 3445 23455566789999986 88888888 88744 44443 1 3 5653333332
Q ss_pred CCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 250 NFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 250 n~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
+.. . ...-.||+|||+=...+|.|= |+...+.- ....+-+|+||+ ..++.|.-+|++
T Consensus 117 ~~~-~---~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~-G~E~sv~vl~~~ 183 (299)
T PRK14571 117 EFM-K---TSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP-GREMTVSILETE 183 (299)
T ss_pred chh-h---hhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc-ceEEEEEEEcCC
Confidence 211 1 223579999999888777774 44433322 124588999998 469998888754
No 14
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=96.53 E-value=0.016 Score=55.39 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=79.9
Q ss_pred eeeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 169 SFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
..++|+|+.--|-. .+|| ..+---|...|||.+. +..+...+. ||- .+ .++.+++| +|.-+...
T Consensus 88 ~~~~d~vf~~lhG~-~ged-g~iq~lle~~gipy~G~~~~asai~~------DK~-~~---k~~l~~~G---Ip~p~~~~ 152 (343)
T PRK14568 88 TIRLDVVFPVLHGK-LGED-GAIQGLLELSGIPYVGCDIQSSALCM------DKS-LA---YIVAKNAG---IATPAFWT 152 (343)
T ss_pred cccCCEEEEcCCCC-CCCc-hHHHHHHHHcCCCccCCCHHHHHHHh------CHH-HH---HHHHHHcC---cCcCCEEE
Confidence 36799999988864 4566 3455556789999985 566777778 885 44 44455778 77755444
Q ss_pred cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeecccc
Q psy10837 248 YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 248 ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+..+. ....-.||+|||+=+..++.|- |+...+..+ ...+-+|+||+- .++.|.=+|+
T Consensus 153 ~~~~~~~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~sv~vl~~ 222 (343)
T PRK14568 153 VTADERP--DAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVVG-SEVGCAVLGN 222 (343)
T ss_pred EECCchh--hhhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcCC-EEEEEEEEcC
Confidence 3332222 0123469999999877777765 444444332 345889999984 4665555553
No 15
>PRK05246 glutathione synthetase; Provisional
Probab=96.49 E-value=0.0046 Score=58.48 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=78.1
Q ss_pred eccEEEEeccccccCCCchh---hhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 171 KPDMILIRQNLRDAGEDHKN---LLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rn---iliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
.+|.|++|.... -+..|.. ++.-+.-.|++.+|+..++.++. ||.++. ++.. .++.|.
T Consensus 79 ~~D~v~~R~~~~-~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~------dK~~~~-~l~~-----------~vP~T~ 139 (316)
T PRK05246 79 DFDVILMRKDPP-FDMEYIYATYLLERAERPGTLVVNKPQSLRDAN------EKLFTL-WFPE-----------LMPPTL 139 (316)
T ss_pred cCCEEEEcCCCC-CChHHHHHHHHHHHHHhCCCeEECCHHHHHhCc------cHHHHH-hhhc-----------cCCCEE
Confidence 589999998663 1222332 55566667999999999999988 997642 2211 355565
Q ss_pred cCCCcccccccCCCCCcEEEeeccccccCcc--------chhhhhh----hcceeeeecccccc--cceeeeeccccc
Q psy10837 248 YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK--------DMAGVVA----VANTYCTTEPYIDS--KFDVHVQKIGSN 311 (316)
Q Consensus 248 ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK--------Diasvva----~~~tY~TtEPfId~--kYDIriQKIG~~ 311 (316)
.-+-.+.+.++....-|+|+|+=.++.|.|= ++..++. +....+-.++||.. ..|+||-=+|+.
T Consensus 140 ~~~~~~~~~~~~~~~~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~ 217 (316)
T PRK05246 140 VTRDKAEIRAFRAEHGDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGE 217 (316)
T ss_pred EeCCHHHHHHHHHHCCCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCE
Confidence 5443322211112223999999888888774 2222221 22346779999975 689999888764
No 16
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=96.24 E-value=0.0071 Score=59.04 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=82.1
Q ss_pred cEEEEeccccccCCCchhhhhh--hhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhC----CCcccceeee
Q psy10837 173 DMILIRQNLRDAGEDHKNLLLG--FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLG----KENFPLIDIT 246 (316)
Q Consensus 173 DFVLiRq~a~~~~~D~rniliG--l~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG----~e~FPLI~Qt 246 (316)
|.||.|-.- +.||..+.- ....|+|.+|++++|..+. ||-. +.++-.++| ...+|.=.+.
T Consensus 68 DvilhK~~~----~~~~~~~~~~~~e~pgv~vidp~~ai~~~~------dR~~----~~~~L~~~~~~~~~~~i~~P~t~ 133 (328)
T PLN02941 68 DVILHKLYG----KEWRQQLEEYREKHPDVTVLDPPDAIQRLH------NRQS----MLQVVADLKLSDGYGSVGVPKQL 133 (328)
T ss_pred CEEEEecCC----HHHHHHHHHHHHHCCCcEEECCHHHHHHHH------HHHH----HHHHHHHcCCcccCCCCCCCCEE
Confidence 677776532 345666654 5689999999999999999 9963 333333555 3446633333
Q ss_pred ecCCCcccc---cccCCCCCcEEEeeccc-----cccCcc--chhhhhhhcceeeeecccccc-cceeeeecccccccc
Q psy10837 247 YYPNFKEMV---SKMTAPKYPVVFKIGHA-----HSGFGK--DMAGVVAVANTYCTTEPYIDS-KFDVHVQKIGSNYKA 314 (316)
Q Consensus 247 ~ypn~~~m~---~k~~~~~fPvVVKvGha-----H~G~GK--Diasvva~~~tY~TtEPfId~-kYDIriQKIG~~YKa 314 (316)
..-+...-+ -+...-.||+|+|+=-+ ..+|.+ |-.++-.+.. .+-.+-||+- -+|+||-=||+++.+
T Consensus 134 v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l~~-p~~lQEfVnh~g~d~RVfVvGd~v~~ 211 (328)
T PLN02941 134 VVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEP-PLVLQEFVNHGGVLFKVYVVGDYVKC 211 (328)
T ss_pred EEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhcCC-cEEEEEecCCCCEEEEEEEECCEEEE
Confidence 333322111 12346799999999333 233444 7777777653 5777889974 899999999998744
No 17
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=95.80 E-value=0.054 Score=50.76 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=73.3
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.+||.|+.=-|-. .+|| ..+---|...|||.++ +..++-.+. ||- ...++.++.| +|.-+-.+.
T Consensus 55 ~~~d~vf~~lhG~-~ge~-~~i~~~le~~gip~~Gs~~~a~~l~~------DK~----~~k~~l~~~g---Iptp~~~~~ 119 (296)
T PRK14569 55 LKPDKCFVALHGE-DGEN-GRVSALLEMLEIKHTSSSMKSSVITM------DKM----ISKEILMHHR---MPTPMAKFL 119 (296)
T ss_pred cCCCEEEEeCCCC-CCCC-hHHHHHHHHcCCCeeCCCHHHHHHHH------CHH----HHHHHHHHCC---CCCCCeEEE
Confidence 4688777744432 3444 2344456777999887 557888877 886 3333444777 776443232
Q ss_pred CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc--ceeeeecccccccceeeeecccc
Q psy10837 249 PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 249 pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~--~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.. ... ....-.||+|||+-+.-++.|= |+...+.-+ ...+-.|+||+- .++.|-=+|+
T Consensus 120 ~~-~~~--~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~G-~E~tv~vl~~ 186 (296)
T PRK14569 120 TD-KLV--AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVTG-KEITVAIVND 186 (296)
T ss_pred ch-hhh--hHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEccccc-EEEEEEEECC
Confidence 21 111 0223479999999887777773 444333221 235789999974 5666655654
No 18
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=95.69 E-value=0.0035 Score=54.94 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHhCCCcccceeeeecCCCcccccc-cCCC-CCcEEEeeccccccCcc-------chhhhhh---hcceeeeeccccc
Q psy10837 231 LQRKLGKENFPLIDITYYPNFKEMVSK-MTAP-KYPVVFKIGHAHSGFGK-------DMAGVVA---VANTYCTTEPYID 298 (316)
Q Consensus 231 i~k~lG~e~FPLI~Qt~ypn~~~m~~k-~~~~-~fPvVVKvGhaH~G~GK-------Diasvva---~~~tY~TtEPfId 298 (316)
+.++.| +|. +.|+.-+..+...+ +..- .||+|+|+-.+|.|.|- +...++. ..+.-...|+||+
T Consensus 10 ~l~~~g---ipv-P~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~ 85 (190)
T PF08443_consen 10 LLAKAG---IPV-PETRVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIP 85 (190)
T ss_dssp HHHHTT---------EEEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE---
T ss_pred HHHHCC---cCC-CCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEecccc
Confidence 334667 884 66766654433211 1122 79999999777776665 4455442 2445668899999
Q ss_pred ccc--eeeeeccccccc
Q psy10837 299 SKF--DVHVQKIGSNYK 313 (316)
Q Consensus 299 ~kY--DIriQKIG~~YK 313 (316)
.++ |+||--||+.+-
T Consensus 86 ~~~g~d~Rv~Vig~~vv 102 (190)
T PF08443_consen 86 KDGGRDLRVYVIGGKVV 102 (190)
T ss_dssp -SS---EEEEEETTEEE
T ss_pred CCCCcEEEEEEECCEEE
Confidence 876 999999998763
No 19
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=95.47 E-value=0.027 Score=53.43 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=74.9
Q ss_pred eeeeccEEEEeccccccCCC-chhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGED-HKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D-~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.-- ++ -...+.-+...|+|..++.+++..+. ||-..+..| .+++| +|..+..
T Consensus 59 ~~~~id~v~~~~------e~v~~~~~~~l~~~g~~~~~~~~~~~~~~------dK~~~~~~~---~~~~g---ip~p~~~ 120 (380)
T TIGR01142 59 EREKPDYIVPEI------EAIATDALFELEKEGYFVVPNARATKLTM------NREGIRRLA---AEELG---LPTSRYM 120 (380)
T ss_pred HHhCCCEEEecc------CccCHHHHHHHHhcCCeeCCCHHHHHHhh------CHHHHHHHH---HHHCC---CCCCCce
Confidence 335688776521 11 11223345667899889999999888 996333222 25778 8877666
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-------ceeeeecccccccceeeee
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-------NTYCTTEPYIDSKFDVHVQ 306 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-------~tY~TtEPfId~kYDIriQ 306 (316)
...+..+.......-.||+|||+=...+|.|- |+...+... ...+-.|.||+..+++.+.
T Consensus 121 ~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~ 194 (380)
T TIGR01142 121 FADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLL 194 (380)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEE
Confidence 66554443211234579999999877777775 444444322 2357899999966666544
No 20
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=95.46 E-value=0.069 Score=51.25 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=79.4
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.-.|-. .+||=+ +---|...|||.+++ ..++-.+. ||- .+.++.++.| +|..+....
T Consensus 87 ~~~d~~f~~~hg~-~gEdg~-iq~~le~~gipy~Gs~~~a~~i~~------DK~----~~k~~l~~~G---I~~p~~~~~ 151 (347)
T PRK14572 87 LDADIAFLGLHGG-AGEDGR-IQGFLDTLGIPYTGSGVLASALAM------DKT----RANQIFLQSG---QKVAPFFEL 151 (347)
T ss_pred cCcCEEEEecCCC-CCCCcH-HHHHHHHcCcCcCCCCHHHHHHHh------CHH----HHHHHHHHcC---CCCCCEEEE
Confidence 5799999877753 555532 444566779999875 67888888 887 4445556778 777665444
Q ss_pred CCCc------ccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccc
Q psy10837 249 PNFK------EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 249 pn~~------~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG 309 (316)
++.. +....+..-.||+|||+-.+-++.|= |+...+... ...+-+|+||+- .++.|--||
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~G-~E~sv~vi~ 227 (347)
T PRK14572 152 EKLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLSG-TEVSCGVLE 227 (347)
T ss_pred EccccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCccc-EEEEEEEEe
Confidence 4321 11111223479999999776666653 444444222 355889999985 677777675
No 21
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.26 E-value=0.035 Score=55.72 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=81.3
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|+---+.. .|+. .....+...|+|.+ ++.+++-.+. ||- .+ .++.+++| +|..+.+
T Consensus 70 ~~~~iDaI~pg~g~l--sE~~-~~a~~~e~~Gi~~iGps~~~i~~~~------DK~-~~---k~~l~~~g---Ipvpp~~ 133 (478)
T PRK08463 70 KACGADAIHPGYGFL--SENY-EFAKAVEDAGIIFIGPKSEVIRKMG------NKN-IA---RYLMKKNG---IPIVPGT 133 (478)
T ss_pred HHhCCCEEEECCCcc--ccCH-HHHHHHHHCCCceecCCHHHHHhhC------cHH-HH---HHHHHHcC---CCCCCCc
Confidence 456778776532221 2221 34555667789986 6899999999 984 44 44445888 8887766
Q ss_pred ecCC---CcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeec
Q psy10837 247 YYPN---FKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQK 307 (316)
Q Consensus 247 ~ypn---~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQK 307 (316)
...+ ..+.......-.||+|||+=.+.+|.|= |+...+.. .+..+-.|.||+...+|.+|-
T Consensus 134 ~~~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v 213 (478)
T PRK08463 134 EKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQI 213 (478)
T ss_pred cccCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEE
Confidence 5442 1221111224579999999776666663 55444431 135688999998777788888
Q ss_pred ccccc
Q psy10837 308 IGSNY 312 (316)
Q Consensus 308 IG~~Y 312 (316)
+|+.+
T Consensus 214 ~~d~~ 218 (478)
T PRK08463 214 LGDNY 218 (478)
T ss_pred EEcCC
Confidence 87653
No 22
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.058 Score=52.22 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=78.9
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
+.-..|.+++|....... =..++.-+.--|+|.+|+.+++.++. ||-+...-|. +-|. ..|.--.++
T Consensus 75 ~~~~~D~i~~R~~~~~~~--~~~~~~~~E~~G~~viN~p~~i~~~~------nK~~~~~~l~----~~~i-pvP~T~i~~ 141 (318)
T COG0189 75 LLDELDVIIMRKDPPFDF--ATRFLRLAERKGVPVINDPQSIRRCR------NKLYTTQLLA----KAGI-PVPPTLITR 141 (318)
T ss_pred hhccCCEEEEecCCchhh--HHHHHHHHHHcCCeEECCHHHHHhhh------hHHHHHHHHH----hcCC-CCCCEEEEc
Confidence 445789999998875222 12234455558999999999999999 8885443332 3331 123322222
Q ss_pred cC-CCcccccccCCCCCcEEEeeccccccCcc------c--hhhhh-hhcce---eeeecccccccc--eeeeecccccc
Q psy10837 248 YP-NFKEMVSKMTAPKYPVVFKIGHAHSGFGK------D--MAGVV-AVANT---YCTTEPYIDSKF--DVHVQKIGSNY 312 (316)
Q Consensus 248 yp-n~~~m~~k~~~~~fPvVVKvGhaH~G~GK------D--iasvv-a~~~t---Y~TtEPfId~kY--DIriQKIG~~Y 312 (316)
=| ...+.+ -....||+|+|+=.++.|.|= | +.+++ .+++. ++-.+.||...+ |+||--+|...
T Consensus 142 ~~~~~~~~~--~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~ 219 (318)
T COG0189 142 DPDEAAEFV--AEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEV 219 (318)
T ss_pred CHHHHHHHH--HHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEE
Confidence 22 212221 113459999999777777665 4 33333 23333 588999999643 66666666554
Q ss_pred cc
Q psy10837 313 KA 314 (316)
Q Consensus 313 Ka 314 (316)
-+
T Consensus 220 ~~ 221 (318)
T COG0189 220 VA 221 (318)
T ss_pred eE
Confidence 43
No 23
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.00 E-value=0.047 Score=54.66 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=79.9
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+---+.-.++ ..+...+...|+|.+ ++.+++..+. ||- .+.++.+++| +|..+.+
T Consensus 70 ~~~~~D~I~pg~g~lse~---~~~a~~~e~~Gi~~igps~~~i~~~~------DK~----~~r~~l~~~G---Ip~pp~~ 133 (472)
T PRK07178 70 VETGCDALHPGYGFLSEN---AELAEICAERGIKFIGPSAEVIRRMG------DKT----EARRAMIKAG---VPVTPGS 133 (472)
T ss_pred HHHCCCEEEeCCCCcccC---HHHHHHHHHcCCCccCCCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCCc
Confidence 445678777633222222 234455667789866 5789999888 886 5555666888 8887765
Q ss_pred e--cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 Y--YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~--ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
. .-+..+.......-.||+|||+=.+.+|.|- |+...+.. ....+-.|.||+...+|.||-+
T Consensus 134 ~~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~ 213 (472)
T PRK07178 134 EGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQIL 213 (472)
T ss_pred CcCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEE
Confidence 4 2233322111234579999999777666665 44433211 1234678999987777888888
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 214 ~d~ 216 (472)
T PRK07178 214 ADS 216 (472)
T ss_pred EEC
Confidence 754
No 24
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=94.76 E-value=0.056 Score=53.31 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=78.2
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+---+...+. ..+..-+...|+|.+ ++.+++..+. ||- .+.++.+++| +|..+.+
T Consensus 71 ~~~~id~I~pg~g~~se~---~~~a~~~e~~Gi~~~g~~~~~~~~~~------DK~----~~r~~l~~~g---ip~pp~~ 134 (449)
T TIGR00514 71 EITGADAIHPGYGFLSEN---ANFAEQCERSGFTFIGPSAESIRLMG------DKV----SAIETMKKAG---VPCVPGS 134 (449)
T ss_pred HHhCCCEEEeCCCccccC---HHHHHHHHHCCCcEECcCHHHHHHhC------CHH----HHHHHHHHCC---CCCCCCc
Confidence 446788887644332222 223445667789854 7899999999 987 4555566888 8876643
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
..-+..+.......-.||+|||+=...+|.|= |+...+.- ....+-.|.||+...++-++-+
T Consensus 135 ~~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~ 214 (449)
T TIGR00514 135 DGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVL 214 (449)
T ss_pred ccCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEE
Confidence 22233332111234579999999666666553 54444422 1245789999987666666666
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 215 ~d 216 (449)
T TIGR00514 215 AD 216 (449)
T ss_pred Ec
Confidence 54
No 25
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=94.72 E-value=0.013 Score=39.95 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCCCccccccc
Q psy10837 25 APPLPARTAGGPPSSGDLSLNLSK 48 (316)
Q Consensus 25 ~~~lp~~~~~~~~~~~~~sl~l~~ 48 (316)
++||||||| .+|||
T Consensus 14 ~~nLPnGYm----------~dl~r 27 (32)
T PF10581_consen 14 MANLPNGYM----------SDLQR 27 (32)
T ss_pred hhcCCcchh----------cccCC
Confidence 789999999 69999
No 26
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=94.29 E-value=0.095 Score=51.36 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=76.6
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+-.-... .|+ ..+..-+...|+|.+ ++.+++..+. ||-+ +.++.+++| +|..+.+
T Consensus 71 ~~~~id~I~p~~~~~--~e~-~~~~~~~e~~gi~~~g~~~~~~~~~~------DK~~----~r~~l~~~g---Ip~pp~~ 134 (451)
T PRK08591 71 EITGADAIHPGYGFL--SEN-ADFAEICEDSGFTFIGPSAETIRLMG------DKVT----AKATMKKAG---VPVVPGS 134 (451)
T ss_pred HHhCCCEEEECCCcc--ccC-HHHHHHHHHCCCceECcCHHHHHHhc------CHHH----HHHHHHHcC---CCCCCCc
Confidence 345678776543221 222 234555677789854 6999999999 9984 444555778 7876654
Q ss_pred e--cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 Y--YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~--ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
+ ..+..+...-...-.||+|||+=.+.+|.|= |+...+.-. +..+-.|.||+....+-++-+
T Consensus 135 ~~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~ 214 (451)
T PRK08591 135 DGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVL 214 (451)
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEE
Confidence 2 2233322111234579999999777766663 444444321 245779999986545666655
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 215 ~d 216 (451)
T PRK08591 215 AD 216 (451)
T ss_pred Ec
Confidence 53
No 27
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.19 E-value=0.084 Score=50.42 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=74.6
Q ss_pred eeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 169 SFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
..++|+|+.--... ... .+.-+.-.|+|.+.+.+++.... ||-+....| .+++| +|.-+....
T Consensus 73 ~~~id~vi~~~e~~----~~~-~~~~l~~~g~~~~~~~~a~~~~~------dK~~~k~~l---~~~~g---ip~p~~~~~ 135 (395)
T PRK09288 73 REKPDYIVPEIEAI----ATD-ALVELEKEGFNVVPTARATRLTM------NREGIRRLA---AEELG---LPTSPYRFA 135 (395)
T ss_pred HhCCCEEEEeeCcC----CHH-HHHHHHhcCCeeCCCHHHHHHHh------CHHHHHHHH---HHhCC---CCCCCceEE
Confidence 34788888632211 111 12223334888788899998888 987543332 24678 887666655
Q ss_pred CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-------ceeeeecccccccceeeeecc
Q psy10837 249 PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 249 pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-------~tY~TtEPfId~kYDIriQKI 308 (316)
-+..+.......-.||+|||+=...+|.|. |+...+.-. ...+-.|.||+..+.+.+.-+
T Consensus 136 ~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~ 209 (395)
T PRK09288 136 DSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTV 209 (395)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEE
Confidence 565544222334589999999777777776 444444221 146899999986555555433
No 28
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.02 E-value=0.077 Score=58.49 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=81.0
Q ss_pred eeeeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccce
Q psy10837 165 KVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLI 243 (316)
Q Consensus 165 kvvRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI 243 (316)
..++..+||.|+..-+...+ -++...|.-.|+|.+ ++.+++-.+. ||- .|. ++.+++| +|..
T Consensus 623 ~i~~~e~~dgVi~~~g~~~~----~~la~~le~~Gi~ilg~s~~ai~~~~------DK~-~~~---~~L~~~G---Ip~P 685 (1066)
T PRK05294 623 EIIEKEKPKGVIVQFGGQTP----LKLAKALEAAGVPILGTSPDAIDLAE------DRE-RFS---KLLEKLG---IPQP 685 (1066)
T ss_pred HHHHHcCCCEEEEEeCchhH----HHHHHHHHHCCCceeCCCHHHHHHhC------CHH-HHH---HHHHHcC---cCCC
Confidence 34466899999876443211 145556677799976 5899999888 876 444 4445888 8876
Q ss_pred eeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-----ceeeeecccccc--cceeeeeccc
Q psy10837 244 DITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-----NTYCTTEPYIDS--KFDVHVQKIG 309 (316)
Q Consensus 244 ~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-----~tY~TtEPfId~--kYDIriQKIG 309 (316)
+.....+..+.......-.||+|||+-...+|.|= |+...+.-+ +..+-.|+||+- .|++.+-.-|
T Consensus 686 ~~~~~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg 765 (1066)
T PRK05294 686 PNGTATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDG 765 (1066)
T ss_pred CeEEECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecC
Confidence 66555565544222345579999999665555553 554444321 234789999985 5776664433
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=93.86 E-value=0.11 Score=53.03 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=81.8
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|.---+...++. .+...+...|+|.+ ++.+++-.+. ||- .+.++.+++| +|.++.+
T Consensus 71 ~~~~~daI~pg~gflsE~~---~~a~~~e~~gi~~iGps~~~i~~~~------DK~----~~k~~l~~~G---Vpv~p~~ 134 (499)
T PRK08654 71 KKAGADAIHPGYGFLAENP---EFAKACEKAGIVFIGPSSDVIEAMG------SKI----NAKKLMKKAG---VPVLPGT 134 (499)
T ss_pred HHhCCCEEEECCCccccCH---HHHHHHHHCCCcEECCCHHHHHHhC------CHH----HHHHHHHHcC---cCCCCCc
Confidence 3456777765433222232 23455666789876 4889999999 998 5555666888 8988877
Q ss_pred ec--CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 YY--PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~y--pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
.. -+..+.......-.||+|||+=.+.+|.|= |+...+... +.-+-.|.||+....|.||-+
T Consensus 135 ~~~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl 214 (499)
T PRK08654 135 EEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQIL 214 (499)
T ss_pred CcCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEE
Confidence 64 233332111334579999999665566553 554444322 234678999997777888888
Q ss_pred cccc
Q psy10837 309 GSNY 312 (316)
Q Consensus 309 G~~Y 312 (316)
++.+
T Consensus 215 ~d~~ 218 (499)
T PRK08654 215 ADKH 218 (499)
T ss_pred EcCC
Confidence 7643
No 30
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=93.85 E-value=0.13 Score=51.40 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=79.3
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..+.|+|+---+...++. .+...+...|++.+ ++.+++..+. ||- .+.++.+++| +|..+.+
T Consensus 74 ~~~~~daI~pg~g~lsE~~---~~~~~~e~~gi~~igps~~ai~~~~------DK~----~~r~~l~~~G---Ip~~p~~ 137 (467)
T PRK12833 74 RQCGADAIHPGYGFLSENA---AFAEAVEAAGLIFVGPDAQTIRTMG------DKA----RARRTARRAG---VPTVPGS 137 (467)
T ss_pred HHhCCCEEEECCCccccCH---HHHHHHHHcCCCccCCCHHHHHHhc------CHH----HHHHHHHHcC---CCCCCCc
Confidence 4456777764322112222 23444666788754 4889999988 987 5556666888 8877665
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
..-+..+.......-.||+|||+=...+|.|= |+...+.. .+..+-.|.||+.-+.|-+|-+
T Consensus 138 ~~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~ 217 (467)
T PRK12833 138 DGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQIL 217 (467)
T ss_pred CcCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEE
Confidence 22233332111224579999999766666663 44433311 2345678999997788888888
Q ss_pred cccc
Q psy10837 309 GSNY 312 (316)
Q Consensus 309 G~~Y 312 (316)
|+..
T Consensus 218 ~dg~ 221 (467)
T PRK12833 218 GDGE 221 (467)
T ss_pred eCCC
Confidence 7754
No 31
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=93.81 E-value=0.13 Score=48.90 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=65.7
Q ss_pred hhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccc
Q psy10837 193 LGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHA 272 (316)
Q Consensus 193 iGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGha 272 (316)
.-+.-.|+|..++.+++..+. ||-+. .++.+++| +|..+.....+..+...-...-.||+|||+=..
T Consensus 77 ~~l~~~g~~~~p~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~ 143 (352)
T TIGR01161 77 EKLEARGVKLFPSPDALAIIQ------DRLTQ----KQFLQKLG---LPVPPFLVIKDEEELDAALQELGFPVVLKARTG 143 (352)
T ss_pred HHHHhCCCeECCCHHHHHHhc------CHHHH----HHHHHHcC---CCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 344555789899999999999 99843 34445778 887776666554443111224479999999654
Q ss_pred -cccCcc-------chhhhhhhc-ceeeeecccccccceeeeecc
Q psy10837 273 -HSGFGK-------DMAGVVAVA-NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 273 -H~G~GK-------Diasvva~~-~tY~TtEPfId~kYDIriQKI 308 (316)
.+|-|- |+...+.-. ..-+-.|.||+..+++.|.-+
T Consensus 144 g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 144 GYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred CCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEE
Confidence 244443 444433222 235789999996666666543
No 32
>PRK08462 biotin carboxylase; Validated
Probab=93.26 E-value=0.23 Score=48.87 Aligned_cols=127 Identities=18% Similarity=0.257 Sum_probs=76.7
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCC-CCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPS-INTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPs-vNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|+---+...++ ..+..-+...|+|. -++.+++..+. ||- .+.++.+++| +|..+..
T Consensus 73 ~~~~~D~i~pg~g~lse~---~~~a~~~e~~Gi~~~g~~~~~~~~~~------dK~----~~r~~l~~~g---Ip~pp~~ 136 (445)
T PRK08462 73 EIFEADAIFPGYGFLSEN---QNFVEICSHHNIKFIGPSVEVMALMS------DKS----KAKEVMKRAG---VPVIPGS 136 (445)
T ss_pred HHcCCCEEEECCCccccC---HHHHHHHHHCCCeEECcCHHHHHHhC------CHH----HHHHHHHHCC---CCCCCCc
Confidence 456788888765432222 33334456778885 47899999999 997 4444455778 7766643
Q ss_pred ec--CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhh---------hcceeeeecccccccceeeeecc
Q psy10837 247 YY--PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVA---------VANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~y--pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva---------~~~tY~TtEPfId~kYDIriQKI 308 (316)
+. -+..+.......-.||+|||+=.+.+|.|= |+...+. ..+..+-.|.||+....+.++-+
T Consensus 137 ~~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~ 216 (445)
T PRK08462 137 DGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQIL 216 (445)
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEE
Confidence 21 122222111334579999999776677663 4443331 11345789999986545666666
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 217 ~~ 218 (445)
T PRK08462 217 GD 218 (445)
T ss_pred EC
Confidence 54
No 33
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.99 E-value=0.22 Score=51.86 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=70.3
Q ss_pred hhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecc
Q psy10837 192 LLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGH 271 (316)
Q Consensus 192 liGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGh 271 (316)
+.-+...|+|...+.+++-.++ ||-+ +.++.+++| +|.-+....-+..+...-...-.||+|||+-.
T Consensus 99 l~~le~~gi~v~ps~~al~i~~------DK~~----~K~~l~~~G---Iptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ 165 (577)
T PLN02948 99 LEALEKQGVDVQPKSSTIRIIQ------DKYA----QKVHFSKHG---IPLPEFMEIDDLESAEKAGDLFGYPLMLKSRR 165 (577)
T ss_pred HHHHHhcCCccCCCHHHHHHhc------CHHH----HHHHHHHCC---cCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCC
Confidence 3556777899889999999999 9983 444445777 88877666555544321133457999999965
Q ss_pred cc-ccCcc-------chhhhhhhcc---eeeeecccccccceeeeecc
Q psy10837 272 AH-SGFGK-------DMAGVVAVAN---TYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 272 aH-~G~GK-------Diasvva~~~---tY~TtEPfId~kYDIriQKI 308 (316)
.. +|.|- |+...+.... .-+-.|.||+....+-|.-+
T Consensus 166 ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~ 213 (577)
T PLN02948 166 LAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVA 213 (577)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEE
Confidence 44 46665 6665554433 23679999997666665544
No 34
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=92.90 E-value=0.16 Score=54.55 Aligned_cols=100 Identities=14% Similarity=0.231 Sum_probs=68.7
Q ss_pred CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCC-CCCcEEEeeccccccC
Q psy10837 198 GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTA-PKYPVVFKIGHAHSGF 276 (316)
Q Consensus 198 ~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~-~~fPvVVKvGhaH~G~ 276 (316)
++.++.||..+...+. ||- ...++.++.| +|.-+...+-+..+....+.. -.||+|||+=.+.+|.
T Consensus 472 ~~~t~~~s~~s~~~~~------DK~----~tk~lL~~~G---IpvP~~~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~ 538 (752)
T PRK02471 472 GNMTSKDNYISPLIME------NKV----VTKKILAEAG---FPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGL 538 (752)
T ss_pred ccccCCCHHHHHHHhh------CHH----HHHHHHHHCC---cCCCCEEEEcCHHHHHHHHHHhcCCCEEEEECCCCCcC
Confidence 5689999999999988 887 3344444667 887776666665544221211 3689999998888888
Q ss_pred cc-------chhhhh-hh-----cceeeeecccccccceeeeeccccc
Q psy10837 277 GK-------DMAGVV-AV-----ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 277 GK-------Diasvv-a~-----~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|= +.+.+. |+ ....+-+|+||+ -.|+||-=||+.
T Consensus 539 GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~-G~E~Rv~Viggk 585 (752)
T PRK02471 539 GISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV-GTEYRFFVLDGK 585 (752)
T ss_pred CeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc-CCEEEEEEECCE
Confidence 83 333333 21 135689999997 579999888763
No 35
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.79 E-value=0.24 Score=55.66 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=82.5
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+---+.-+++. .+...+.-.|++.++ +.+++-.+. ||- ...++.+++| +|.++.+
T Consensus 71 k~~~iDaI~PGyGflsE~~---~~a~~le~~Gi~fiGps~e~i~~~~------DK~----~ar~la~~~G---VPvpp~t 134 (1143)
T TIGR01235 71 KLNGVDAIHPGYGFLSENS---EFADACNKAGIIFIGPKAEVMDQLG------DKV----AARNLAIKAG---VPVVPGT 134 (1143)
T ss_pred HHhCCCEEEECCCccccCH---HHHHHHHHcCCcccCCCHHHHHHhc------CHH----HHHHHHHHcC---CCCCCCc
Confidence 3456777765322222232 334456667898874 788888888 987 5555666888 8988776
Q ss_pred ecC--CCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 YYP--NFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~yp--n~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
..+ +..+...-...-.||+|||+-.+.+|.|= |+...+.- .+..+-.|.||+....|.||-+
T Consensus 135 ~~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVl 214 (1143)
T TIGR01235 135 DGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLL 214 (1143)
T ss_pred ccCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEE
Confidence 433 22222111234579999999666666553 55554432 2345789999998778999988
Q ss_pred cccc
Q psy10837 309 GSNY 312 (316)
Q Consensus 309 G~~Y 312 (316)
|+.+
T Consensus 215 gD~~ 218 (1143)
T TIGR01235 215 GDKH 218 (1143)
T ss_pred EeCC
Confidence 8754
No 36
>PRK05586 biotin carboxylase; Validated
Probab=92.60 E-value=0.26 Score=48.74 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=67.6
Q ss_pred hhhhhhhhcCCCC-CCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee--cCCCcccccccCCCCCcE
Q psy10837 189 KNLLLGFNIGGIP-SINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFKEMVSKMTAPKYPV 265 (316)
Q Consensus 189 rniliGl~y~GIP-svNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~--ypn~~~m~~k~~~~~fPv 265 (316)
..+-..+...|+| ...+.+++-.+. ||- . +.++.+++| +|..+.++ .-+..+...-...-.||+
T Consensus 89 ~~~a~~~~~~gi~~~g~s~~~~~~~~------DK~-~---~k~~l~~~G---Ipvp~~~~~~~~~~~e~~~~~~~igyPv 155 (447)
T PRK05586 89 SKFAKMCKECNIVFIGPDSETIELMG------NKS-N---AREIMIKAG---VPVVPGSEGEIENEEEALEIAKEIGYPV 155 (447)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHhhC------CHH-H---HHHHHHHCC---CCCCCCcccccCCHHHHHHHHHHcCCCE
Confidence 3444455677887 446888998888 995 3 344445888 88776543 234333321123457999
Q ss_pred EEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecccc
Q psy10837 266 VFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 266 VVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
|||+=.+.+|.|= |+...+.- .+.-+-.|.||+...++.++-+++
T Consensus 156 vvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d 216 (447)
T PRK05586 156 MVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGD 216 (447)
T ss_pred EEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEEC
Confidence 9999666555554 54444321 123466899999756677777764
No 37
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=92.58 E-value=0.25 Score=48.16 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=76.6
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|++-... +....+..-|.-.|+|.++ +.+++-.+. ||-|. .++.+++| +|..+..
T Consensus 24 ~~~~id~vi~g~E~----~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~------dK~~~----k~~l~~~g---Iptp~~~ 86 (379)
T PRK13790 24 KQQNVDWVVIGPEQ----PLIDGLADILRANGFKVFGPNKQAAQIEG------SKLFA----KKIMEKYN---IPTADYK 86 (379)
T ss_pred HHhCCCEEEECCcH----HHHHHHHHHHHhCCCcEECCCHHHHHHhC------CHHHH----HHHHHHCC---CCCCCEE
Confidence 44678888853322 3344566678889999884 667877777 88743 33445778 8876655
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-----ceeeeeccccc-ccceeeeecccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-----NTYCTTEPYID-SKFDVHVQKIGS 310 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-----~tY~TtEPfId-~kYDIriQKIG~ 310 (316)
.+.+..+....+..-.||+|||+=..-+|.|= |+...+.-. ...+-.|+||+ ..|++.+-..|.
T Consensus 87 ~~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~ 163 (379)
T PRK13790 87 EVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGD 163 (379)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccCceEEEEEEeeCC
Confidence 54444433222334579999999655555443 443333211 23588999998 466666554443
No 38
>PRK12999 pyruvate carboxylase; Reviewed
Probab=92.20 E-value=0.21 Score=56.00 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=81.0
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+...+|.|+-.-+.-+++.+ +...+.-.|++.+ ++.+++..+. ||- .+.++.+++| +|.++.+
T Consensus 75 k~~~iDaI~PgyGflsE~~~---~a~~~e~~Gi~fiGps~eai~~~~------DK~----~~r~~l~~~G---VPv~P~~ 138 (1146)
T PRK12999 75 KQAGVDAIHPGYGFLSENPE---FARACAEAGITFIGPTAEVLRLLG------DKV----AARNAAIKAG---VPVIPGS 138 (1146)
T ss_pred HHhCCCEEEeCCCccccCHH---HHHHHHHcCCcccCCCHHHHHHhC------CHH----HHHHHHHHCC---CCCCCCc
Confidence 34567777654322223332 2344566789866 5899999999 998 4444555788 8988877
Q ss_pred e--cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 Y--YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~--ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
. ..+..+.......-.||+|||+=.+.+|.|= |+...+.-+ +.-+-.|.||+....|.+|-+
T Consensus 139 ~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl 218 (1146)
T PRK12999 139 EGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQIL 218 (1146)
T ss_pred ccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEE
Confidence 5 3333333111234579999999666666663 554444321 234788999997666888888
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 219 ~D~ 221 (1146)
T PRK12999 219 GDK 221 (1146)
T ss_pred EEC
Confidence 754
No 39
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.15 E-value=0.58 Score=50.03 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=81.8
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.=-|-. .+|| ..+---|...|||.+. +..+.-.+. ||- ...++.++.| +|.-+....
T Consensus 525 ~~~d~vf~~lhG~-~ged-g~iq~~le~~gipy~Gs~~~asal~~------DK~----~~K~~l~~~G---Ipt~~~~~~ 589 (809)
T PRK14573 525 AKVDVVLPILHGP-FGED-GTMQGFLEIIGKPYTGPSLAFSAIAM------DKV----LTKRFASDVG---VPVVPYQPL 589 (809)
T ss_pred ccCCEEEEcCCCC-CCCC-hHHHHHHHHcCCCeeCCCHHHHHHHc------CHH----HHHHHHHHCC---CCCCCEEEE
Confidence 4689888877654 4666 4455567888999877 455555566 887 5555666788 777665444
Q ss_pred CCC-----cc-cccc-cCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 249 PNF-----KE-MVSK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 pn~-----~~-m~~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
... .+ .+.+ ...-.||+|||+-+..++.|= |+...+.- .+..+-+|+||..-.+|.|.-+|+.
T Consensus 590 ~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~ 669 (809)
T PRK14573 590 TLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDG 669 (809)
T ss_pred echhcccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCC
Confidence 321 01 0000 223579999999888887776 44444432 2345889999987777777777764
No 40
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=92.03 E-value=0.47 Score=47.40 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=71.1
Q ss_pred eeeeeccEEEEeccccccCCCc--hhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccce
Q psy10837 167 VRSFKPDMILIRQNLRDAGEDH--KNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLI 243 (316)
Q Consensus 167 vRsfkPDFVLiRq~a~~~~~D~--rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI 243 (316)
.+..++|+|++ ..|+. ..+..-+...|+|++.+ ..+.-... ||-| +.++.+++| +|-.
T Consensus 64 a~~~~iD~Vv~------g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~------dK~~----~K~~l~~~g---Ipt~ 124 (426)
T PRK13789 64 LKSNPFDLIVV------GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEG------SKHF----AKSLMKEAK---IPTA 124 (426)
T ss_pred HHHcCCCEEEE------CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHc------CHHH----HHHHHHHcC---CCCC
Confidence 36678999996 23443 34445567789998753 33444445 7763 344445777 8887
Q ss_pred eeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccc
Q psy10837 244 DITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDS 299 (316)
Q Consensus 244 ~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~ 299 (316)
+...+.+..+....+..-.||+|||+=..-+|.|= |+...+.-. ...+-.|.||+-
T Consensus 125 ~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G 196 (426)
T PRK13789 125 SYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG 196 (426)
T ss_pred CeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC
Confidence 77777776554322334579999999766666554 443333211 136889999984
No 41
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=91.88 E-value=0.36 Score=47.12 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=74.3
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.--.. ..|+ ..+...+...|+|.+ ++.+++-.+. ||- .+.++.+++| +|..+..
T Consensus 71 ~~~~id~I~p~~~~--~~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~------dK~----~~k~~l~~~g---Ip~p~~~ 134 (450)
T PRK06111 71 KKTGAEAIHPGYGL--LSEN-ASFAERCKEEGIVFIGPSADIIAKMG------SKI----EARRAMQAAG---VPVVPGI 134 (450)
T ss_pred HHhCCCEEEeCCCc--cccC-HHHHHHHHHCCCeEECCCHHHHHHhC------CHH----HHHHHHHHCC---CCCCCCc
Confidence 55677888753211 1222 345556677889865 6788999888 887 4455555788 7766542
Q ss_pred ec--CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 YY--PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~y--pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
++ -+..+.......-.||+|||+=...+|.|= |+...+.- .+..+-.|.||+-..++.++-+
T Consensus 135 ~~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 214 (450)
T PRK06111 135 TTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLL 214 (450)
T ss_pred CcCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEE
Confidence 21 222222111234579999999777777774 44444321 1234678999986444555444
No 42
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=91.74 E-value=0.42 Score=44.27 Aligned_cols=121 Identities=13% Similarity=0.263 Sum_probs=69.3
Q ss_pred eeeeeccEEEEecccc-ccCCCchhhhhhhhcCCCC-CCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 167 VRSFKPDMILIRQNLR-DAGEDHKNLLLGFNIGGIP-SINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 167 vRsfkPDFVLiRq~a~-~~~~D~rniliGl~y~GIP-svNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
.+.+++|+|+..-... ..-..++.. |.-.|++ ..|+.+++..+. ||- .+.++.+++| +|. +
T Consensus 65 ~~~~~id~ii~~~d~~~~~~a~~~~~---l~~~g~~~~~~~~~~~~~~~------dK~----~~~~~l~~~g---ip~-p 127 (326)
T PRK12767 65 CKKEKIDLLIPLIDPELPLLAQNRDR---FEEIGVKVLVSSKEVIEICN------DKW----LTYEFLKENG---IPT-P 127 (326)
T ss_pred HHHhCCCEEEECCcHHHHHHHHHHHH---HHHcCcEEEeCCHHHHHHHh------cHH----HHHHHHHHcC---CCC-C
Confidence 3557899888632110 000112222 3333654 578999999988 986 4445555778 775 4
Q ss_pred eeecCC-Cccccc--ccCCCCCcEEEeeccccccCcc-------chhhhhhhcceeeeecccccc-cceeee
Q psy10837 245 ITYYPN-FKEMVS--KMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVANTYCTTEPYIDS-KFDVHV 305 (316)
Q Consensus 245 Qt~ypn-~~~m~~--k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~~tY~TtEPfId~-kYDIri 305 (316)
+++..+ ..+... ....-.||+|+|+-.+.+|.|- |+...+.-. ..+-.|+||+. .|++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~-~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 128 KSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV-PNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred CEEcccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC-CCeEEEeccCCceEEEEE
Confidence 555543 233311 1234579999999777666664 444444332 36788999974 444443
No 43
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=91.22 E-value=0.3 Score=54.02 Aligned_cols=128 Identities=18% Similarity=0.308 Sum_probs=78.5
Q ss_pred eeeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 166 VVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 166 vvRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
.++..+||.|+..-+. +.--++..-+.-.|+|.+ |+.+++-.+. ||- .|. ++.+++| +|..+
T Consensus 624 i~~~e~idgVI~~~gg----~~~~~la~~le~~Gi~i~G~s~~~i~~~~------DK~-~f~---~lL~~~G---Ip~P~ 686 (1050)
T TIGR01369 624 IIELEKPEGVIVQFGG----QTPLNLAKALEEAGVPILGTSPESIDRAE------DRE-KFS---ELLDELG---IPQPK 686 (1050)
T ss_pred HHhhcCCCEEEEccCc----HhHHHHHHHHHHCCCcEECCCHHHHHHHC------CHH-HHH---HHHHHCC---cCCCC
Confidence 4466789988855332 112244445556789876 7999999888 876 344 4455888 88766
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCc--c-----chhhhhhhc-----ceeeeeccccc-c-cceeeeecccc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFG--K-----DMAGVVAVA-----NTYCTTEPYID-S-KFDVHVQKIGS 310 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~G--K-----Diasvva~~-----~tY~TtEPfId-~-kYDIriQKIG~ 310 (316)
....-+..+.......-.||+|||+=..-+|.| + |+...+.-+ +.-+-.|.||+ . .|++.+--.|.
T Consensus 687 ~~~v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g 766 (1050)
T TIGR01369 687 WKTATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGE 766 (1050)
T ss_pred eEEECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCC
Confidence 666666555422233458999999955444444 3 444433221 13378999998 3 56665544443
No 44
>PRK02186 argininosuccinate lyase; Provisional
Probab=90.37 E-value=0.55 Score=50.89 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=59.9
Q ss_pred hcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecccccc
Q psy10837 196 NIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSG 275 (316)
Q Consensus 196 ~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G 275 (316)
..-|+|. |+.+++.++. ||- .+.++.++.| +|..+....-+..+.......-.||+|||+=...+|
T Consensus 90 e~lglpg-~~~ea~~~~~------dK~----~~r~~L~~~G---Ip~P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~gS 155 (887)
T PRK02186 90 RRLGLPA-ANTEAIRTCR------DKK----RLARTLRDHG---IDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGS 155 (887)
T ss_pred HHhCcCC-CCHHHHHHhc------CHH----HHHHHHHHcC---CCCCCEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 3347886 6789999999 987 4555555777 776544444443333211334579999999777776
Q ss_pred Ccc----chhhhhhh-------cceeeeeccccc-ccceeee
Q psy10837 276 FGK----DMAGVVAV-------ANTYCTTEPYID-SKFDVHV 305 (316)
Q Consensus 276 ~GK----Diasvva~-------~~tY~TtEPfId-~kYDIri 305 (316)
.|= |.+.+.+. ....+-.|.||+ ..|++.+
T Consensus 156 ~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G~E~sVe~ 197 (887)
T PRK02186 156 VGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEGDEYSVET 197 (887)
T ss_pred CCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccCCcEEEEE
Confidence 664 33333321 134578999998 3555544
No 45
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=90.33 E-value=0.57 Score=45.75 Aligned_cols=123 Identities=14% Similarity=0.207 Sum_probs=69.7
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.- . +.+..-.+..-+...|+|.+ .+.+++..+. ||-+.. ++.+++| +|..+..
T Consensus 59 ~~~~id~vi~~--~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~~k----~~l~~~g---ip~p~~~ 121 (420)
T PRK00885 59 KEEGIDLTVVG--P--EAPLVAGIVDAFRAAGLPIFGPTKAAAQLEG------SKAFAK----DFMARYG---IPTAAYE 121 (420)
T ss_pred HHhCCCEEEEC--C--chHHHHHHHHHHHHCCCcEECcCHHHHHHHc------CHHHHH----HHHHHcC---CCCCCeE
Confidence 55678888852 1 11111223334566799976 5788888888 888443 3444667 7755433
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
..-+..+....+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|.||+- ..+.|.-+
T Consensus 122 ~~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~ 198 (420)
T PRK00885 122 TFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAF 198 (420)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEE
Confidence 33343332111224579999999666666553 444433211 235789999984 34444444
No 46
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=89.99 E-value=0.52 Score=45.61 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=63.4
Q ss_pred CCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccc-cccCcc
Q psy10837 200 IPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHA-HSGFGK 278 (316)
Q Consensus 200 IPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGha-H~G~GK 278 (316)
.+..++.+++..+. ||- .+.++.+++| +|..+.....+..+...-...-.||+|||+=.. .+|.|-
T Consensus 86 ~~~~p~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv 152 (372)
T PRK06019 86 VPVPPGPDALAIAQ------DRL----TEKQFLDKLG---IPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQ 152 (372)
T ss_pred CeeCcCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCe
Confidence 45678999999999 998 4445555788 888877776665554211224579999999653 345444
Q ss_pred -------chhhhhhhc-ceeeeecccccccceeeeecc
Q psy10837 279 -------DMAGVVAVA-NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 279 -------Diasvva~~-~tY~TtEPfId~kYDIriQKI 308 (316)
|+...+... ..-+-.|.||+..+++.+.-+
T Consensus 153 ~~v~~~~el~~a~~~~~~~~~ivEe~I~~~~E~sv~~~ 190 (372)
T PRK06019 153 WVIRSAEDLEAAWALLGSVPCILEEFVPFEREVSVIVA 190 (372)
T ss_pred EEECCHHHHHHHHHhcCCCCEEEEecCCCCeEEEEEEE
Confidence 555555332 235689999997666665433
No 47
>PRK07206 hypothetical protein; Provisional
Probab=89.47 E-value=0.61 Score=44.99 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred eeeeeccEEEEeccccccCCCchhhhhhh-hcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceee
Q psy10837 167 VRSFKPDMILIRQNLRDAGEDHKNLLLGF-NIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDI 245 (316)
Q Consensus 167 vRsfkPDFVLiRq~a~~~~~D~rniliGl-~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Q 245 (316)
+|..++|.|+-- .|..-.+.--+ ...|+|..|+.+++-.+. ||- .+.+..+++| +|....
T Consensus 66 ~~~~~~d~vi~~------~e~~~~~~a~l~~~l~l~~~~~~~~~~~~~------dK~----~~r~~l~~~g---i~~p~~ 126 (416)
T PRK07206 66 LRKLGPEAIIAG------AESGVELADRLAEILTPQYSNDPALSSARR------NKA----EMINALAEAG---LPAARQ 126 (416)
T ss_pred HHHcCCCEEEEC------CCccHHHHHHHHHhcCCCcCCChhhHHHhh------CHH----HHHHHHHHcC---CCcccE
Confidence 355778888852 12222222222 346788889999998888 887 3333444677 776654
Q ss_pred eecCCCcccccccCCCCC---cEEEeeccccccCcc-------chhhhhhhc----------ceeeeeccccc-ccceee
Q psy10837 246 TYYPNFKEMVSKMTAPKY---PVVFKIGHAHSGFGK-------DMAGVVAVA----------NTYCTTEPYID-SKFDVH 304 (316)
Q Consensus 246 t~ypn~~~m~~k~~~~~f---PvVVKvGhaH~G~GK-------Diasvva~~----------~tY~TtEPfId-~kYDIr 304 (316)
....+..+....+....| |+|||+=.+.+|.|= |+...+.-. ..-+-.|.||+ ..|.+.
T Consensus 127 ~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~sv~ 206 (416)
T PRK07206 127 INTADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEYVVN 206 (416)
T ss_pred EecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEEEEE
Confidence 444444443222223334 999999776666663 333322111 13467899998 355553
No 48
>PLN02257 phosphoribosylamine--glycine ligase
Probab=88.85 E-value=0.82 Score=45.93 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=76.4
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|++-. +.+..-.+..-|.-.|+|.+ .+..++.... ||- .+.++.+++| +|..+..
T Consensus 59 ~~~~id~vvvg~----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~------dK~----~~K~~l~~~G---Iptp~~~ 121 (434)
T PLN02257 59 RKWGVGLVVVGP----EAPLVAGLADDLVKAGIPTFGPSAEAAALEG------SKN----FMKDLCDKYK---IPTAKYE 121 (434)
T ss_pred HHcCCCEEEECC----chHHHHHHHHHHHHCCCCEECChHHHHHHHc------CHH----HHHHHHHHcC---CCCCCeE
Confidence 345667766431 22223366677788899976 6788888878 887 3444555778 8876655
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+-+..+...-+..-.||+|||+=..-+|.|= |+...+.- ....+-.|.||+-. .+-|+-+.+
T Consensus 122 ~~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G~-E~Sv~~~~d 200 (434)
T PLN02257 122 TFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE-EASFFALVD 200 (434)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC-EEEEEEEEC
Confidence 55554443211334579999999765555554 43333311 12468899999865 665554433
No 49
>PRK14016 cyanophycin synthetase; Provisional
Probab=88.84 E-value=0.6 Score=49.87 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=68.1
Q ss_pred hhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccc
Q psy10837 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHS 274 (316)
Q Consensus 195 l~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~ 274 (316)
++.++. +-+|..++-.++ ||- ...++.++.| +|..+...+.+..+.......-.||+|||+=.+..
T Consensus 196 i~~~~~-~~~s~~a~~i~~------DK~----~tk~lL~~~G---IPvP~~~~v~s~~~a~~~a~~iG~PvVVKP~~G~~ 261 (727)
T PRK14016 196 IQAAET-DQTSAIAVDIAC------DKE----LTKRLLAAAG---VPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNH 261 (727)
T ss_pred HHHhcC-CCCcHHHHHHhC------CHH----HHHHHHHHCC---cCCCCeeEeCCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 444444 477777888888 987 4555666888 99988877777665432233457999999955555
Q ss_pred cCcc--------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 275 GFGK--------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 275 G~GK--------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|-|- |+...+..+ ...+-.|.||+ ..|+||--||+.
T Consensus 262 G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~-G~d~Rv~Vvgg~ 308 (727)
T PRK14016 262 GRGVTVNITTREEIEAAYAVASKESSDVIVERYIP-GKDHRLLVVGGK 308 (727)
T ss_pred CCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC-CceEEEEEECCE
Confidence 5443 333333222 25688999998 678998877764
No 50
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=88.73 E-value=0.61 Score=50.68 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCc
Q psy10837 198 GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFG 277 (316)
Q Consensus 198 ~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~G 277 (316)
+-.=+.+|..++-.++ ||- ...++.++.| +|.-+...+.+..+...-...-.||+|||+=.+++|.|
T Consensus 197 ~~~t~~~s~ia~~ia~------DK~----~tk~lL~~~G---IpvP~~~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~G 263 (864)
T TIGR02068 197 ATETDRTSAIAVEIAC------DKD----LTKEILSDAG---VPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRG 263 (864)
T ss_pred eecCCCCcHHHHHHHc------CHH----HHHHHHHHcC---cCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCccC
Confidence 3345667777888888 887 4445555778 99888777777655422133446999999977777766
Q ss_pred c--------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 278 K--------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 278 K--------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
- |+...+..+ ...+-.|+||. -.|+|+.=||+.
T Consensus 264 V~l~v~s~~el~~a~~~a~~~~~~vlVEefI~-G~e~rvlVv~~~ 307 (864)
T TIGR02068 264 VTINILTRDEIESAYEAAVEESSGVIVERFIT-GRDHRLLVVGGK 307 (864)
T ss_pred EEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc-CCEEEEEEECCE
Confidence 5 333333322 24689999997 478898877764
No 51
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=88.37 E-value=0.7 Score=50.02 Aligned_cols=100 Identities=10% Similarity=0.153 Sum_probs=66.1
Q ss_pred CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccC-CCCCcEEEeeccccccC
Q psy10837 198 GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMT-APKYPVVFKIGHAHSGF 276 (316)
Q Consensus 198 ~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~-~~~fPvVVKvGhaH~G~ 276 (316)
|-+-+..|..++..++ ||- ...++.++.| +|.-+...+.+..+.+.... ...||||||+=.+.+|.
T Consensus 459 ~s~ts~tS~ia~~i~~------DK~----~TK~iL~~aG---IPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~ 525 (737)
T TIGR01435 459 ANMTSKDNYVSPLIME------NKV----VTKKVLAEAG---FRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGL 525 (737)
T ss_pred ceecCCccHHHHHHhc------CHH----HHHHHHHHcC---cCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcC
Confidence 3445667888888888 886 3444445777 88887777766444321111 12689999998888887
Q ss_pred cc----c---hhhh---hhhc---ceeeeecccccccceeeeeccccc
Q psy10837 277 GK----D---MAGV---VAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 277 GK----D---iasv---va~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|= + .+.+ +..+ ...+-+|+||+ -.|+||-=||+.
T Consensus 526 GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~-G~EyRv~VIg~k 572 (737)
T TIGR01435 526 GITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP-GTEYRFFVLNDK 572 (737)
T ss_pred CeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc-CCEEEEEEECCe
Confidence 76 2 2332 2221 34689999998 579999888764
No 52
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=88.24 E-value=0.79 Score=50.93 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=75.4
Q ss_pred eeeeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccce
Q psy10837 165 KVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLI 243 (316)
Q Consensus 165 kvvRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI 243 (316)
+.++..+||.|+.--+. ..--++..-+.-.|+|.+ ++.+++-.+. ||- .+.++.+++| +|..
T Consensus 624 ~I~~~e~~dgVI~~~g~----~~~~~la~~le~~Gi~ilG~s~e~i~~~~------DK~----~f~~ll~~~G---Ip~P 686 (1068)
T PRK12815 624 NVAEAENIKGVIVQFGG----QTAINLAKGLEEAGLTILGTSPDTIDRLE------DRD----RFYQLLDELG---LPHV 686 (1068)
T ss_pred HHHhhcCCCEEEEecCc----HHHHHHHHHHHHCCCeEECCcHHHHHHHc------CHH----HHHHHHHHcC---cCCC
Confidence 34566789998873111 111233344555688865 5788988887 876 3445555888 8877
Q ss_pred eeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeeccccc-ccceeee
Q psy10837 244 DITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYID-SKFDVHV 305 (316)
Q Consensus 244 ~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId-~kYDIri 305 (316)
+-....+..+.......-.||+|||+-...+|.|= |+...+.-. ..-+-.|.||+ ..|++.+
T Consensus 687 ~~~~~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 687 PGLTATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred CeEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecCceEEEEE
Confidence 76666665544222334589999999666655444 444444322 23478899997 3555544
No 53
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=88.23 E-value=0.54 Score=39.08 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-------ceeeee
Q psy10837 228 LLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-------NTYCTT 293 (316)
Q Consensus 228 L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-------~tY~Tt 293 (316)
+.++.+++| +|.-+-..+-+..++........||+|||+-++.+|.|= |+...++-. .+.+-.
T Consensus 8 ~~~~~~~~g---v~~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~iv 84 (184)
T PF13535_consen 8 MRELLKKAG---VPVPKTRIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIV 84 (184)
T ss_dssp HHHHHHHHT---S----EEEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEE
T ss_pred HHHHHHHcC---cCCCCEEEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEE
Confidence 344555888 885555555554444222333459999999888777665 555554332 245889
Q ss_pred ccccc-ccceeeee
Q psy10837 294 EPYID-SKFDVHVQ 306 (316)
Q Consensus 294 EPfId-~kYDIriQ 306 (316)
|.||+ ..|.+++-
T Consensus 85 qe~i~g~e~~~~~~ 98 (184)
T PF13535_consen 85 QEYIPGDEYSVDGV 98 (184)
T ss_dssp EE---SEEEEEEEE
T ss_pred EEeeeeeeEEEEEE
Confidence 99999 35666543
No 54
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=88.05 E-value=0.78 Score=47.46 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=65.2
Q ss_pred CCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc
Q psy10837 199 GIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK 278 (316)
Q Consensus 199 GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK 278 (316)
....+||..++-.+. ||. ...++.++.| +|+-+...+.+..+...-... -.|+|||+=.+.+|.|-
T Consensus 282 s~~~~~s~~ai~~~~------DK~----~tk~lL~~aG---IpVP~~~~~~~~~~~~~~~~~-~G~vVVKP~~G~~G~Gv 347 (547)
T TIGR03103 282 SLSELTSAVAMSLCD------DKR----LTRRLVSEAG---LQVPEQQLAGNGEAVEAFLAE-HGAVVVKPVRGEQGKGI 347 (547)
T ss_pred ccCCCCCHHHHHHhc------CHH----HHHHHHHHcC---cCCCCEEEECCHHHHHHHHHH-hCCEEEEECCCCCCcCe
Confidence 355889999999999 988 5555556788 997776666665443211111 23799999777676664
Q ss_pred --------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 279 --------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 279 --------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|+...+..+ ...+-.|.||+ ..|+|+-=||+.
T Consensus 348 ~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~-G~d~Rv~Vigg~ 390 (547)
T TIGR03103 348 SVDVRTPDDLEAAIAKARQFCDRVLLERYVP-GEDLRLVVIDFE 390 (547)
T ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEEEecc-CCeEEEEEECCE
Confidence 344443322 24688999996 579998877654
No 55
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=88.03 E-value=0.92 Score=44.09 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=71.8
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
|..++|.|+...... -.-.+..-+...|+|.+ ++.+++..+. ||- .+.++.+++| +|..+..
T Consensus 61 ~~~~id~vi~~~e~~----l~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~----~~k~~l~~~g---Ip~p~~~ 123 (423)
T TIGR00877 61 KKKKIDLAVIGPEAP----LVLGLVDALEEAGIPVFGPTKEAAQLEG------SKA----FAKDFMKRYG---IPTAEYE 123 (423)
T ss_pred HHhCCCEEEECCchH----HHHHHHHHHHHCCCeEECCCHHHHHHHC------CHH----HHHHHHHHCC---CCCCCeE
Confidence 456788887532110 01123345567799965 6888988888 887 3444445778 8855544
Q ss_pred ecCCCcccccccCCCCCc-EEEeeccccccCcc-------chhhhhhhc--------ceeeeecccccccceeeeecc
Q psy10837 247 YYPNFKEMVSKMTAPKYP-VVFKIGHAHSGFGK-------DMAGVVAVA--------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fP-vVVKvGhaH~G~GK-------Diasvva~~--------~tY~TtEPfId~kYDIriQKI 308 (316)
.+-+..+....+..-.|| +|||+=...+|.|= |+...+.-. ..-+-.|.||+- ..+.|.-+
T Consensus 124 ~~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~ 200 (423)
T TIGR00877 124 VFTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAF 200 (423)
T ss_pred EECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEE
Confidence 455544432223455799 99999666666553 433333111 134678999985 35555443
No 56
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=83.73 E-value=0.99 Score=46.25 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC--CCcccccccCCCCCcEEEeeccccc
Q psy10837 198 GGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP--NFKEMVSKMTAPKYPVVFKIGHAHS 274 (316)
Q Consensus 198 ~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp--n~~~m~~k~~~~~fPvVVKvGhaH~ 274 (316)
+|+=.++ +.+++-+|. ||- .+.++.++.| .|+++...=. +..+.++....-.||||||.=-+-+
T Consensus 98 ~gl~fiGP~~~~i~~mg------dK~----~ar~~~~~aG---VP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgG 164 (449)
T COG0439 98 AGLTFIGPSAEAIRRMG------DKI----TARRLMAKAG---VPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGG 164 (449)
T ss_pred cCCeeeCcCHHHHHHhh------hHH----HHHHHHHHcC---CCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 3455555 678999999 987 7888888999 9999988322 2234433345566999999966666
Q ss_pred cCcc-------chhhhhhhcc---------eeeeecccccccceeeeecccccc
Q psy10837 275 GFGK-------DMAGVVAVAN---------TYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 275 G~GK-------Diasvva~~~---------tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
|.|- |+......+. .-+-.|-||...+-|.+|=+|+.|
T Consensus 165 g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~ 218 (449)
T COG0439 165 GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGH 218 (449)
T ss_pred cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCc
Confidence 6555 3333332221 227789999999999999999876
No 57
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=83.54 E-value=2.3 Score=48.31 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=77.9
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.--....++ ..+..-+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+-+
T Consensus 70 ~~~~idaIiPG~gflsE~---~~~a~~~e~~Gi~~iGps~ea~~~~~------DK~----~ar~ll~~~G---VPt~p~~ 133 (1201)
T TIGR02712 70 KKTGAQAIHPGYGFLSEN---AAFAEACEAAGIVFVGPTPEQIRKFG------LKH----TARELAEAAG---VPLLPGT 133 (1201)
T ss_pred HHHCCCEEEeCCcccccC---HHHHHHHHHcCCcEECCCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCce
Confidence 455677666432222222 234455677788865 5889999999 986 3444445788 8988755
Q ss_pred ec-CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeeccc
Q psy10837 247 YY-PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 247 ~y-pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG 309 (316)
.. -+..+.......-.||+|||+=...+|.|= |+...+.- .+.-+-.|.||+.-..+-||-++
T Consensus 134 ~lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~ 213 (1201)
T TIGR02712 134 GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFG 213 (1201)
T ss_pred eecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEE
Confidence 43 444443222335589999999777777773 33332211 12347889999865567777665
Q ss_pred c
Q psy10837 310 S 310 (316)
Q Consensus 310 ~ 310 (316)
+
T Consensus 214 D 214 (1201)
T TIGR02712 214 D 214 (1201)
T ss_pred C
Confidence 4
No 58
>PLN02735 carbamoyl-phosphate synthase
Probab=75.95 E-value=3.5 Score=46.41 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=60.2
Q ss_pred CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-----
Q psy10837 204 NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK----- 278 (316)
Q Consensus 204 NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK----- 278 (316)
.|.+++-.+. ||- .+.++.+++| +|..+-...-+..+...-...-.||||||+-..-+|.|=
T Consensus 692 ~s~e~i~i~~------DK~----~~k~~l~~~G---Ip~p~~~~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~ 758 (1102)
T PLN02735 692 TSPDSIDAAE------DRE----RFNAILNELK---IEQPKGGIARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYS 758 (1102)
T ss_pred CCHHHHHHhc------CHH----HHHHHHHHcC---CCCCCeeEeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECC
Confidence 4778888877 876 3334455888 888776555554443211334589999999776666553
Q ss_pred --chhhhhhhc-----ceeeeecccccccceeeeecccc
Q psy10837 279 --DMAGVVAVA-----NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 279 --Diasvva~~-----~tY~TtEPfId~kYDIriQKIG~ 310 (316)
|+...+.-+ +..+-.|+||+....|-|+-+++
T Consensus 759 ~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D 797 (1102)
T PLN02735 759 DDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALAD 797 (1102)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEEC
Confidence 555444332 13478999998666666666664
No 59
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=74.48 E-value=2.6 Score=38.51 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCcccceeeeec--CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------c
Q psy10837 227 HLLQLQRKLGKENFPLIDITYY--PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------N 288 (316)
Q Consensus 227 ~L~~i~k~lG~e~FPLI~Qt~y--pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~ 288 (316)
...++-+++| +|.++-+-. -+..+-+.-...-.|||+||.=.+-+|-|= |+.+.+..+ +
T Consensus 4 ~~~~~~~~~g---vp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 4 RFRKLAKKLG---VPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp HHHHHHHHTT----BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHCC---CCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 3445666888 899888877 443333211234589999999555444443 666665433 4
Q ss_pred eeeeecccccccceeeeeccccccc
Q psy10837 289 TYCTTEPYIDSKFDVHVQKIGSNYK 313 (316)
Q Consensus 289 tY~TtEPfId~kYDIriQKIG~~YK 313 (316)
.=+..|.||..--.|-||-|++.+-
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~g 105 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKG 105 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTS
T ss_pred ceEEEeeehhhhhhhhhhhhhcccc
Confidence 4577899999766899999988763
No 60
>PRK06524 biotin carboxylase-like protein; Validated
Probab=73.67 E-value=4.9 Score=41.91 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=57.1
Q ss_pred hhcCCCCC-CCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec--CCCcccccccCC--CCCcEEEee
Q psy10837 195 FNIGGIPS-INTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFKEMVSKMTA--PKYPVVFKI 269 (316)
Q Consensus 195 l~y~GIPs-vNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y--pn~~~m~~k~~~--~~fPvVVKv 269 (316)
+...|||. .-+..++-.+. ||- ...++.+++| +|..+-.+. -+..++...... -.||+|||+
T Consensus 122 LE~lGIpy~gP~a~asai~m------DK~----~tK~l~~~aG---IPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP 188 (493)
T PRK06524 122 ARQAGLEVMHPPAELRHRLD------SKI----VTTRLANEAG---VPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQT 188 (493)
T ss_pred HHHCCCeEECcCHHHHHHhC------CHH----HHHHHHHHcC---CCCCCcccccCCCHHHHHHHHHhccCCCcEEEEE
Confidence 46779998 56777777777 887 5555667888 777664442 222232111112 579999999
Q ss_pred ccccccCcc-------chhhhhhhc--ceeeeeccccc
Q psy10837 270 GHAHSGFGK-------DMAGVVAVA--NTYCTTEPYID 298 (316)
Q Consensus 270 GhaH~G~GK-------Diasvva~~--~tY~TtEPfId 298 (316)
=.+-+|.|- |+...+.-. ...+-.|+||+
T Consensus 189 ~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~ 226 (493)
T PRK06524 189 PYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR 226 (493)
T ss_pred CCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC
Confidence 877777776 555544322 12356678886
No 61
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=72.88 E-value=4.5 Score=45.03 Aligned_cols=120 Identities=13% Similarity=0.262 Sum_probs=71.4
Q ss_pred eeeeeeeccEEEEecc---ccccCC--CchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCC
Q psy10837 165 KVVRSFKPDMILIRQN---LRDAGE--DHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKE 238 (316)
Q Consensus 165 kvvRsfkPDFVLiRq~---a~~~~~--D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e 238 (316)
+.++..+||+|+---+ +..... ..+. -+...|||.+ .+.+++-.+. ||. .+.++.+++|
T Consensus 75 ~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~---~le~~Gv~~~G~~~~ai~~~~------DK~----~~k~~l~~~G-- 139 (1050)
T TIGR01369 75 KIIEKERPDAILPTFGGQTALNLAVELEESG---VLEKYGVEVLGTPVEAIKKAE------DRE----LFREAMKEIG-- 139 (1050)
T ss_pred HHHHHhCCCEEEECCCChhHHHHHhhHHHHh---HHHHCCCEEECCCHHHHHHhC------CHH----HHHHHHHHCC--
Confidence 3345678999986422 111011 1111 1445577765 5788999888 887 3344445778
Q ss_pred cccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhh--hcc---eeeeeccccccc
Q psy10837 239 NFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVA--VAN---TYCTTEPYIDSK 300 (316)
Q Consensus 239 ~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva--~~~---tY~TtEPfId~k 300 (316)
+|..+.....+..+...-...-.||+|||+-...+|.|- |+...+. +.. ..+-.|.||+-.
T Consensus 140 -ipvp~~~~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 140 -EPVPESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGW 212 (1050)
T ss_pred -CCCCCeeecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCc
Confidence 888777666665544211223479999999766665554 4444432 211 467899999863
No 62
>PLN02735 carbamoyl-phosphate synthase
Probab=70.55 E-value=6.4 Score=44.36 Aligned_cols=123 Identities=14% Similarity=0.239 Sum_probs=71.7
Q ss_pred eeeeeccEEEEecc---ccc-cCCC-chhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcc
Q psy10837 167 VRSFKPDMILIRQN---LRD-AGED-HKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENF 240 (316)
Q Consensus 167 vRsfkPDFVLiRq~---a~~-~~~D-~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~F 240 (316)
++..+||+|+.=-| +.. .-+- .+. .|...|||.+. +.+++-.+. || |+|.++++ ++| +
T Consensus 94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g---~Le~~GI~~~G~~~~ai~~~~------DK-~~~k~~l~---~~G---I 157 (1102)
T PLN02735 94 IAKERPDALLPTMGGQTALNLAVALAESG---ILEKYGVELIGAKLDAIKKAE------DR-ELFKQAME---KIG---L 157 (1102)
T ss_pred HHHhCCCEEEECCCchhhHHHHHHHhhhC---HHHHCCCEEECCCHHHHHHhc------CH-HHHHHHHH---HCC---C
Confidence 46679999997322 110 0000 111 23456776654 788888888 99 66666554 778 8
Q ss_pred cceeeeecCCCcccccccCCC-CCcEEEeecc--ccccCcc-----chhhhhhh-----cceeeeecccccc--cceeee
Q psy10837 241 PLIDITYYPNFKEMVSKMTAP-KYPVVFKIGH--AHSGFGK-----DMAGVVAV-----ANTYCTTEPYIDS--KFDVHV 305 (316)
Q Consensus 241 PLI~Qt~ypn~~~m~~k~~~~-~fPvVVKvGh--aH~G~GK-----Diasvva~-----~~tY~TtEPfId~--kYDIri 305 (316)
|..+....-+..+.......- .||+|||+-. +-.|+|. |+...+.- ....+-.|.||.- .|.+-+
T Consensus 158 pvp~~~~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~V 237 (1102)
T PLN02735 158 KTPPSGIATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEV 237 (1102)
T ss_pred CCCCeeEeCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEE
Confidence 887766655544321111122 4999999965 4445555 55554422 1356788999985 355444
No 63
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=68.97 E-value=7 Score=43.57 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=71.2
Q ss_pred eeeeeeccEEEEecccc-ccC---CCc-hhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCc
Q psy10837 166 VVRSFKPDMILIRQNLR-DAG---EDH-KNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKEN 239 (316)
Q Consensus 166 vvRsfkPDFVLiRq~a~-~~~---~D~-rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~ 239 (316)
.++..+||+|+.--+.. ..+ +-+ +. .|..-|+|.+ .+.+++..+. ||- .| .++.+++|
T Consensus 77 ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~---~le~~Gv~~~g~~~~~i~~~~------DK~-~~---k~~l~~~G--- 140 (1066)
T PRK05294 77 IIEKERPDAILPTMGGQTALNLAVELAESG---VLEKYGVELIGAKLEAIDKAE------DRE-LF---KEAMKKIG--- 140 (1066)
T ss_pred HHHHHCcCEEEECCCCchhhhhhHHHHhhC---HHHHCCCEEECCCHHHHHHhc------CHH-HH---HHHHHHCC---
Confidence 34668999998754321 000 001 11 2344567765 4788888888 886 33 44455888
Q ss_pred ccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhh--hc---ceeeeecccccc
Q psy10837 240 FPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVA--VA---NTYCTTEPYIDS 299 (316)
Q Consensus 240 FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva--~~---~tY~TtEPfId~ 299 (316)
+|..+.....+..+.......-.||+|||+-.+.+|.|- |+...+. +. ...+-.|.||+-
T Consensus 141 ipvp~~~~v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 141 LPVPRSGIAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred cCCCCeeeeCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 888776666555444222334579999999766666554 5554442 21 135789999985
No 64
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=66.10 E-value=8.4 Score=43.12 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=69.2
Q ss_pred eeeeeccEEEEecc---ccc-cCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccc
Q psy10837 167 VRSFKPDMILIRQN---LRD-AGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFP 241 (316)
Q Consensus 167 vRsfkPDFVLiRq~---a~~-~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FP 241 (316)
++..+||.|+.=-+ +.. ..+-++. --|..-|||.+ .+.+++.... ||.. | .++.+++| +|
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~--g~Le~~gv~l~g~~~~~i~~~~------DK~~-~---k~~l~~~G---Ip 142 (1068)
T PRK12815 78 IAREKPDALLATLGGQTALNLAVKLHED--GILEQYGVELLGTNIEAIQKGE------DRER-F---RALMKELG---EP 142 (1068)
T ss_pred HHHhCcCEEEECCCCchHHHHHHHHHhc--CHHHHCCCEEECCCHHHHHHhc------CHHH-H---HHHHHHcC---cC
Confidence 45678999987222 110 0000111 12345577764 4788888888 8873 3 33445888 88
Q ss_pred ceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhh-hh-c---ceeeeeccccccc
Q psy10837 242 LIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVV-AV-A---NTYCTTEPYIDSK 300 (316)
Q Consensus 242 LI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvv-a~-~---~tY~TtEPfId~k 300 (316)
.-+....-+..+.......-.||+|||+-...+|-|- |+...+ .+ . ..-+-.|.||+-.
T Consensus 143 vp~~~~v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~ 213 (1068)
T PRK12815 143 VPESEIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW 213 (1068)
T ss_pred CCCceeeCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC
Confidence 7666555555543211334579999999776666554 554444 11 1 1357899999863
No 65
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=65.12 E-value=36 Score=33.28 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=81.9
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhh-HhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQG-VYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~S-iynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|.|+-..|-. .+|| ..+---|...|+|.+-+-.. -.... ||- ...++.+..| +|.-+-...
T Consensus 60 ~~~~vvfp~lhG~-~gED-g~iqg~le~~giPyvg~gv~~Sa~~m------dk~----~~K~~~~~~g---~~~a~~~~~ 124 (317)
T COG1181 60 QKADVVFPVLHGP-YGED-GTIQGLLELLGIPYVGKGVLASAGAM------DKI----VTKRLFKAEG---LPVAPYVAL 124 (317)
T ss_pred ccCCEEEEeCCCC-CCCC-chHHHHHHHhCCCEecCchhhhhhcc------cHH----HHHHHHHHCC---CCccceeee
Confidence 5788888888887 5555 23333456778887764322 22223 665 4455667777 555444444
Q ss_pred CC---Ccccccc-cCCCCCcEEEeeccccccCcc-------chhhhh---hhcceeeeecccccccceeeeecccccc
Q psy10837 249 PN---FKEMVSK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVV---AVANTYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 249 pn---~~~m~~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvv---a~~~tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
.. ...++.+ ...-.||++||+.+.-+-+|- |..+.+ ...+.=+-.|.||. -..|.|--+|+++
T Consensus 125 ~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 125 TRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred ecccchhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC-cceEEEEecCCcc
Confidence 33 2222211 235689999999998888887 555544 44556677999999 8889999999877
No 66
>KOG1742|consensus
Probab=64.41 E-value=9.4 Score=34.26 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=32.5
Q ss_pred hccCcccCCchhHHHHHHHHHHHh---CCCcccceee---eecCCCcccccccCCCCCcEEEeecc
Q psy10837 212 FQVPKLVLDKPWVFAHLLQLQRKL---GKENFPLIDI---TYYPNFKEMVSKMTAPKYPVVFKIGH 271 (316)
Q Consensus 212 f~~~~~~lDKpWvfs~L~~i~k~l---G~e~FPLI~Q---t~ypn~~~m~~k~~~~~fPvVVKvGh 271 (316)
|| |+.+|||.|-+=.= +.+.+. -++.-|+||- .||+-.-.= ++ ....|||||-.-
T Consensus 67 ~~-P~vnldkLWtlv~~-~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkg--kl-p~~~PvIVKak~ 127 (147)
T KOG1742|consen 67 FC-PTVNLDKLWTLVRE-QTRVKAAKNKTGAAPVIDVVQSGYYKVLGKG--KL-PEETPVIVKAKY 127 (147)
T ss_pred cC-CcccHHHHHHhhhH-HHHHHHhccCCCCCceeeeeecceeEeeccc--cC-CCCCcEEEeccc
Confidence 34 89999999965211 122222 2467788875 456544311 12 238899999754
No 67
>PRK06849 hypothetical protein; Provisional
Probab=63.59 E-value=8.2 Score=37.31 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccC--CCCCcEEEeeccccccCcc
Q psy10837 203 INTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMT--APKYPVVFKIGHAHSGFGK 278 (316)
Q Consensus 203 vNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~--~~~fPvVVKvGhaH~G~GK 278 (316)
.++.+++..+. ||- .+.++.+++| +|. +.|+..+..+-+..+. ...||+|+|+=...+|.|-
T Consensus 105 ~~~~~~~~~~~------DK~----~~~~~~~~~G---ipv-P~t~~v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v 168 (389)
T PRK06849 105 HFDFELLLLLH------NKW----EFAEQARSLG---LSV-PKTYLITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRV 168 (389)
T ss_pred cCCHHHHHHhh------CHH----HHHHHHHHcC---CCC-CCEEEeCCHHHHHHHhhcCCCCcEEEEeCcccCCCeE
Confidence 57888888888 887 6667777999 876 5566554433211111 1379999999777777665
No 68
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=62.93 E-value=11 Score=38.81 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred eeeeccEEEEeccccccCCC--chhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccce-
Q psy10837 168 RSFKPDMILIRQNLRDAGED--HKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLI- 243 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D--~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI- 243 (316)
+..++|+|++- .|+ ...+..-|...|+|.+ ++.++..... ||- .+.++.++.| +|--
T Consensus 66 ~~~~id~Vi~g------~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~------dK~----~~K~~l~~~g---Ipt~~ 126 (486)
T PRK05784 66 KEVNPDLVVIG------PEEPLFAGVADVLREEGFPVFGASSKCARIEK------SKV----WARELMWKYS---IPGRL 126 (486)
T ss_pred HHhCCCEEEEC------CchHHHHHHHHHHHhCCCCEECCcHHHHHHhc------CHH----HHHHHHHHcC---cCCCc
Confidence 55688988872 233 2244456777899964 7888888888 887 3333444677 6742
Q ss_pred eeeecCCCcccccccCCCCCcEEEeeccccccCcc
Q psy10837 244 DITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK 278 (316)
Q Consensus 244 ~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK 278 (316)
....+.+..+....+ ...+|+|||+=..-+|.|=
T Consensus 127 ~~~~~~~~~ea~~~~-~~~~PvVVKP~~~aggkGV 160 (486)
T PRK05784 127 RYKVFYDVEEAAKFI-EYGGSVAIKPARQAGGKGV 160 (486)
T ss_pred cceEeCCHHHHHHHH-hhcCCEEEeeCCCCCCCCE
Confidence 344445555442222 2237999999655565554
No 69
>KOG0238|consensus
Probab=60.62 E-value=9.4 Score=40.76 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=77.5
Q ss_pred cCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee--cCCCcccccccCC
Q psy10837 184 AGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFKEMVSKMTA 260 (316)
Q Consensus 184 ~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~--ypn~~~m~~k~~~ 260 (316)
++.+|-. ...-+||-+|. +.++|..+- ||- .-.+|-+..| .|||+=.. --+-.++++....
T Consensus 83 En~~Fae---~c~~~Gi~FiGP~~~aIrdMG------~K~----~sk~im~~Ag---Vp~vpG~~g~~qs~e~~~~~a~e 146 (670)
T KOG0238|consen 83 ENAEFAE---LCEDAGITFIGPPPSAIRDMG------DKS----TSKQIMKAAG---VPLVPGYHGEDQSDEEAKKVARE 146 (670)
T ss_pred cchHHHH---HHHHcCCeEECCCHHHHHHhc------chH----HHHHHHHhcC---CccccCcccccccHHHHHHHHHh
Confidence 4445543 34456666666 456788877 876 7777887888 89986421 1111233333446
Q ss_pred CCCcEEEeeccccccCcc-------chhhhhhhcc---------eeeeecccccccceeeeecccccc
Q psy10837 261 PKYPVVFKIGHAHSGFGK-------DMAGVVAVAN---------TYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 261 ~~fPvVVKvGhaH~G~GK-------Diasvva~~~---------tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
-.|||.||.-++-+|-|- |+...+..++ +-+-.|-|||.-.-|.+|-.|+.|
T Consensus 147 IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~h 214 (670)
T KOG0238|consen 147 IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKH 214 (670)
T ss_pred cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCC
Confidence 789999999766666554 7777776554 557789999999999999999876
No 70
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=59.71 E-value=6.7 Score=35.04 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=46.7
Q ss_pred HHhCCCcccceeeeecCCCcccccccCCCCCcEEEe-eccccccCcc-------chhhhhhhc-ceeeeeccccccccee
Q psy10837 233 RKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFK-IGHAHSGFGK-------DMAGVVAVA-NTYCTTEPYIDSKFDV 303 (316)
Q Consensus 233 k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVK-vGhaH~G~GK-------Diasvva~~-~tY~TtEPfId~kYDI 303 (316)
+++| +|.-+.....+..++..-...-.||+|+| .=.+..|-|- |++...... ..-+-.|.||+....|
T Consensus 2 ~~~g---ip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~Ei 78 (172)
T PF02222_consen 2 DELG---IPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDREI 78 (172)
T ss_dssp HHTT-----B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEEE
T ss_pred cccC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEEE
Confidence 3566 88888888888776633344558999999 4555666664 777666443 5668899999998888
Q ss_pred eeecc
Q psy10837 304 HVQKI 308 (316)
Q Consensus 304 riQKI 308 (316)
-|.-.
T Consensus 79 Sviva 83 (172)
T PF02222_consen 79 SVIVA 83 (172)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
No 71
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=54.12 E-value=15 Score=33.10 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeecccc
Q psy10837 260 APKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 260 ~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.-.||+|||+-+.-+.+|= |+...+.. .++-+-+|+|| .-.++.|--+|+
T Consensus 31 ~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI-~G~E~tv~vl~~ 90 (203)
T PF07478_consen 31 DLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI-SGREFTVGVLGN 90 (203)
T ss_dssp HHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE---SSEEEEEEEEES
T ss_pred hcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee-cccceEEEEEec
Confidence 4578999999888777775 55555533 34678999999 566666666663
No 72
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=52.52 E-value=22 Score=38.34 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=79.6
Q ss_pred ccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCc--ccccccC
Q psy10837 183 DAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--EMVSKMT 259 (316)
Q Consensus 183 ~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~--~m~~k~~ 259 (316)
++|.||-..++ -+|+=.|. |..+|..+= ||- .-.+|-.+.| -|+++=+.=+.-. +.++.--
T Consensus 86 SENa~FA~a~~---~aGlvfIGP~~~aI~aMG------dK~----~AK~l~~~Ag---Vp~VPG~~g~~qd~~~~~~~A~ 149 (645)
T COG4770 86 SENADFAQAVE---DAGLVFIGPSAGAIRAMG------DKI----AAKKLAAEAG---VPTVPGYHGPIQDAAELVAIAE 149 (645)
T ss_pred ccCHHHHHHHH---HCCcEEECCCHHHHHHhc------cHH----HHHHHHHHcC---CCccCCCCCcccCHHHHHHHHH
Confidence 46667655443 36776666 678888888 886 5556667778 8988765555432 2322233
Q ss_pred CCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecccccc
Q psy10837 260 APKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 260 ~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
.-.|||.||.-++-+|-|- |++..+.- .++-+..|-|++.-.-|-||-||++|
T Consensus 150 eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~H 218 (645)
T COG4770 150 EIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQH 218 (645)
T ss_pred hcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCC
Confidence 6789999998655444443 66665533 35779999999999999999999986
No 73
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=51.42 E-value=47 Score=33.14 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=50.2
Q ss_pred cCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccC
Q psy10837 197 IGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGF 276 (316)
Q Consensus 197 y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~ 276 (316)
..|+|...+.+.+.... ||-+ ..++.+++| +|.-+ ++-+..+ -.||+|||+=.+-+|-
T Consensus 106 ~~~~p~~gn~~~l~~e~------dK~~----~k~~L~~aG---Ip~p~--~~~~~~~-------i~~PvIVKp~~g~ggk 163 (358)
T PRK13278 106 KFKVPMFGNREILRWEA------DRDK----ERKLLEEAG---IRIPR--KYESPED-------IDRPVIVKLPGAKGGR 163 (358)
T ss_pred HCCCCcCCCHHHHHHhc------CHHH----HHHHHHHcC---CCCCC--EeCCHHH-------cCCCEEEEeCCCCCCC
Confidence 45578777787888878 8774 334445888 77644 2333222 2599999994443333
Q ss_pred cc-------chhhhhhh-c-------ceeeeeccccc-ccceee
Q psy10837 277 GK-------DMAGVVAV-A-------NTYCTTEPYID-SKFDVH 304 (316)
Q Consensus 277 GK-------Diasvva~-~-------~tY~TtEPfId-~kYDIr 304 (316)
|= |+..-+.- . ...+..|.||+ ..|.++
T Consensus 164 Gv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~ 207 (358)
T PRK13278 164 GYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFH 207 (358)
T ss_pred CeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCcEEEEE
Confidence 32 33332211 1 35678889987 345444
No 74
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=36.11 E-value=39 Score=34.02 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=68.6
Q ss_pred eeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceee
Q psy10837 167 VRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDI 245 (316)
Q Consensus 167 vRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Q 245 (316)
.+..++|.|++-... +--..+.--|.-.|+|.+ .|.+++-... ||-|... +.+++| +|--..
T Consensus 61 ~~~~~id~Vi~~~d~----~l~~~~~~~l~~~Gi~v~gps~~~a~~e~------dK~~~k~----~l~~~g---Iptp~~ 123 (435)
T PRK06395 61 ALKNNVDIVFVGPDP----VLATPLVNNLLKRGIKVASPTMEAAMIET------SKMFMRY----LMERHN---IPGNIN 123 (435)
T ss_pred HHHhCCCEEEECCCh----HHHHHHHHHHHHCCCcEECCCHHHHHHhh------CHHHHHH----HHHHCC---cCCCcc
Confidence 355778988874211 112234444556699986 7888888877 8875544 333667 553211
Q ss_pred -eecCCCcccccccCCCCCcEEEeeccccccCcc--------chhhhhh-hc-----ceeeeeccccc-ccceeeeeccc
Q psy10837 246 -TYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK--------DMAGVVA-VA-----NTYCTTEPYID-SKFDVHVQKIG 309 (316)
Q Consensus 246 -t~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK--------Diasvva-~~-----~tY~TtEPfId-~kYDIriQKIG 309 (316)
...-+..+.......-.||+|||+=..-+|.|= ++...+. .. ..-+-.|.||+ ..|.+.+--=|
T Consensus 124 ~~~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd~~~dg 203 (435)
T PRK06395 124 FNACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQAFSDG 203 (435)
T ss_pred cceeCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEEEEEcC
Confidence 112232333222223479999999554455443 2233221 11 12367788886 46665544334
Q ss_pred cc
Q psy10837 310 SN 311 (316)
Q Consensus 310 ~~ 311 (316)
.+
T Consensus 204 ~~ 205 (435)
T PRK06395 204 KH 205 (435)
T ss_pred Ce
Confidence 33
No 75
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=34.50 E-value=48 Score=33.03 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=46.7
Q ss_pred eeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 169 SFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
|.=.|.|.+|. ..|..+...=+|++||.||-|...+.=| =+-+-|.-|++..|+ +--+...|.
T Consensus 97 sr~~D~I~~R~------~~~~~ve~lA~~s~VPViNgLtD~~HP~---------Q~LADl~Ti~E~~g~--l~g~k~a~v 159 (310)
T COG0078 97 SRMVDAIMIRG------FSHETLEELAKYSGVPVINGLTDEFHPC---------QALADLMTIKEHFGS--LKGLKLAYV 159 (310)
T ss_pred HhhhheEEEec------ccHHHHHHHHHhCCCceEcccccccCcH---------HHHHHHHHHHHhcCc--ccCcEEEEE
Confidence 34578888885 4567888999999999999998877433 333556667777775 434444444
Q ss_pred CCCccc
Q psy10837 249 PNFKEM 254 (316)
Q Consensus 249 pn~~~m 254 (316)
-.-+.|
T Consensus 160 GDgNNv 165 (310)
T COG0078 160 GDGNNV 165 (310)
T ss_pred cCcchH
Confidence 444443
No 76
>KOG2156|consensus
Probab=33.32 E-value=35 Score=36.71 Aligned_cols=84 Identities=27% Similarity=0.470 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHHHhCCCcccceeeeec-CCCccccccc--C-CCCCcEEEeeccccccCcc----chhhhh--h--hc
Q psy10837 220 DKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFKEMVSKM--T-APKYPVVFKIGHAHSGFGK----DMAGVV--A--VA 287 (316)
Q Consensus 220 DKpWvfs~L~~i~k~lG~e~FPLI~Qt~y-pn~~~m~~k~--~-~~~fPvVVKvGhaH~G~GK----Diasvv--a--~~ 287 (316)
|+-| ..+.+-+.++|+.+|+..+++|- |+-.+-+.|. . +.+- ++||+=..|.|.|= +.+..- + +.
T Consensus 262 D~lW--~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppasaRg~gIrv~~kw~q~pk~rpLvv 338 (662)
T KOG2156|consen 262 DRLW--RNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRL-WIVKPPASARGIGIRVINKWSQFPKDRPLVV 338 (662)
T ss_pred hHHH--HHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCcccc-EEecCcccccCcceEeccchhhCCCcccHHH
Confidence 4444 68899999999999999999994 6655543321 1 3333 88999999999996 222111 0 23
Q ss_pred ceeeeeccccc-ccceeeee
Q psy10837 288 NTYCTTEPYID-SKFDVHVQ 306 (316)
Q Consensus 288 ~tY~TtEPfId-~kYDIriQ 306 (316)
+.|+..-=.|+ +|+|+|+-
T Consensus 339 Q~yieRP~ling~KFDlrlY 358 (662)
T KOG2156|consen 339 QKYIERPLLINGSKFDLRLY 358 (662)
T ss_pred HHHhhcceeecCcceeEEEE
Confidence 35554333455 68998863
No 77
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=32.61 E-value=34 Score=31.74 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=19.1
Q ss_pred cEEEeeccccccCcc----chhhhhh----h-----cceeeeecc-ccc-ccceeeeec
Q psy10837 264 PVVFKIGHAHSGFGK----DMAGVVA----V-----ANTYCTTEP-YID-SKFDVHVQK 307 (316)
Q Consensus 264 PvVVKvGhaH~G~GK----Diasvva----~-----~~tY~TtEP-fId-~kYDIriQK 307 (316)
--+||++..+.|.|= |+..+.+ . .+.|+. .| .|+ .|+|||+--
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~-~PlLi~grKFDlR~yv 124 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRFSKNKNQPYVVQKYIE-NPLLIDGRKFDLRVYV 124 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCCHCCTTS-EEEEE--S-SB--BTTB-EEEEEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHHhhhhhhhhhhhhccC-CCeEEeeeeEEEEEEE
Confidence 479999999999987 6666664 2 223332 23 334 699999843
No 78
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=29.13 E-value=82 Score=35.81 Aligned_cols=101 Identities=26% Similarity=0.268 Sum_probs=70.4
Q ss_pred hcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCC-----cccccccCCCCCcEEEee
Q psy10837 196 NIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-----KEMVSKMTAPKYPVVFKI 269 (316)
Q Consensus 196 ~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~-----~~m~~k~~~~~fPvVVKv 269 (316)
.-+||-.|. +++.+-.|- ||- .-..+-.+.| .|+|+-|==|-- .++ ...-.|||.||-
T Consensus 102 ~eaGI~FIGP~~e~ld~~G------dKv----~Ar~~A~~ag---vPvipgt~~~~~~~ee~~~f---a~~~gyPvmiKA 165 (1149)
T COG1038 102 AEAGITFIGPKPEVLDMLG------DKV----KARNAAIKAG---VPVIPGTDGPIETIEEALEF---AEEYGYPVMIKA 165 (1149)
T ss_pred HHcCCEEeCCCHHHHHHhc------cHH----HHHHHHHHcC---CCccCCCCCCcccHHHHHHH---HHhcCCcEEEEE
Confidence 345666666 677777777 775 4445556667 999987754432 233 446799999998
Q ss_pred ccccccCcc-------chhhhh---------hhcceeeeecccccccceeeeecccccc
Q psy10837 270 GHAHSGFGK-------DMAGVV---------AVANTYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 270 GhaH~G~GK-------Diasvv---------a~~~tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
--+-+|=|- |++.-+ |..++.+-.|-||+.---|.||-+|++|
T Consensus 166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~ 224 (1149)
T COG1038 166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTH 224 (1149)
T ss_pred ccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCC
Confidence 544444443 554443 3346789999999999999999999986
No 79
>KOG2635|consensus
Probab=28.77 E-value=88 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=29.8
Q ss_pred eEEEEEcCCC-cchhhh--ccccccccceeeEEeeeeeceeEE
Q psy10837 106 FSLLVIDDQN-TDWSKY--FRGRRLHGDYDVRVEQAEFKELSL 145 (316)
Q Consensus 106 k~LLVIDd~~-tDW~Ky--Frgkkv~G~~~irVEQaeF~ei~l 145 (316)
-++|+|.|.= ..+++- ...-.++|...||+--.|+..|+|
T Consensus 276 ~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~l 318 (512)
T KOG2635|consen 276 SVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIEL 318 (512)
T ss_pred eEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEE
Confidence 3788888764 333332 445578999999999999999988
No 80
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=27.70 E-value=64 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=20.0
Q ss_pred EEEEcCCCcch-hhhccccccccceeeEEee
Q psy10837 108 LLVIDDQNTDW-SKYFRGRRLHGDYDVRVEQ 137 (316)
Q Consensus 108 LLVIDd~~tDW-~KyFrgkkv~G~~~irVEQ 137 (316)
+++|=|+..-| +|..+=. +-|.|.|+|.|
T Consensus 35 ~v~i~dPe~S~vAk~~~i~-~pG~YAlkVr~ 64 (64)
T PRK06393 35 FLIITEPEGSAIAKRAGIT-EPGMYAIKVRQ 64 (64)
T ss_pred EEEEECCchhHHHHHhCCC-CCCeEEEEeeC
Confidence 44444555555 6666665 78999999976
No 81
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=26.62 E-value=83 Score=30.92 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCcccceeeeecCCCcccccccCCC-CCcEEEeec
Q psy10837 227 HLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAP-KYPVVFKIG 270 (316)
Q Consensus 227 ~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~-~fPvVVKvG 270 (316)
+..+|.++.| +|..+.....+..|...-...- .||+|||+=
T Consensus 7 ~ak~lL~~~g---Ipvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~ 48 (388)
T PRK00696 7 QAKELFAKYG---VPVPRGIVATTPEEAVEAAEELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHcC---CCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEe
Confidence 3445666778 8988888877777663212222 799999984
No 82
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=25.59 E-value=84 Score=30.87 Aligned_cols=49 Identities=24% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCcccceeeeecCCCcccccccCCCC-CcEEEeeccccccCcc
Q psy10837 227 HLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPK-YPVVFKIGHAHSGFGK 278 (316)
Q Consensus 227 ~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~-fPvVVKvGhaH~G~GK 278 (316)
+-.+|.++.| +|.-+-...-+..+...-...-. ||+|||+=...+|-||
T Consensus 7 ~aK~ll~~~G---Ipvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~ 56 (386)
T TIGR01016 7 QAKQIFAKYG---IPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGK 56 (386)
T ss_pred HHHHHHHHcC---CCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCcc
Confidence 3455667888 88777666555444311111223 8999999532344554
No 83
>PF14302 DUF4377: Domain of unknown function (DUF4377)
Probab=24.14 E-value=1.1e+02 Score=24.27 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=23.2
Q ss_pred cceEEEEEcCCCcchhhhcccccccc-------ceeeEEeeeee
Q psy10837 104 RCFSLLVIDDQNTDWSKYFRGRRLHG-------DYDVRVEQAEF 140 (316)
Q Consensus 104 ~~k~LLVIDd~~tDW~KyFrgkkv~G-------~~~irVEQaeF 140 (316)
..++|+|-++.+.+|. +|-+ .+.| +|.|||.....
T Consensus 18 ~~~Cl~Vk~~~~~~W~-~fy~-~IeGF~yE~Gy~Y~L~Vk~~~~ 59 (80)
T PF14302_consen 18 PMECLQVKEEDNDDWE-LFYG-SIEGFEYEPGYEYVLRVKRTPV 59 (80)
T ss_pred ccEEEEEEEcCCCCcE-ECcC-cccCcCcCCCcEEEEEEEEEEC
Confidence 5678999999999999 4433 1222 45666665443
No 84
>COG3567 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.29 E-value=19 Score=37.20 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=35.1
Q ss_pred CCceeeeeeccccccccccccccCCCCCCCCCCCCCCCC
Q psy10837 2 EKKSFEFIGRRDKFQDQSSFVSTAPPLPARTAGGPPSSG 40 (316)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 40 (316)
++||-+|+|-.|-....+.+|++++.||.--.-||.|++
T Consensus 283 tqks~sfsglkDlLd~f~~~vaGAadmP~T~L~GQs~~g 321 (452)
T COG3567 283 TQKSNSFSGLKDLLDQFMMDVAGAADMPATRLFGQSPKG 321 (452)
T ss_pred hhhccccccHHHHHHHHHHHhhccccCchhhhcccCccc
Confidence 579999999999999999999999999998888886655
No 85
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=22.65 E-value=4.7e+02 Score=26.03 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=36.2
Q ss_pred cccCcCcceEEEEEcCCCcchhhhccccccccceeeEEe--eeeeceeEEEEecCCCeeEEEEEeeCCeeeeee
Q psy10837 98 ASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVE--QAEFKELSLTANGDLGCVVSMAVFRGGTKVVRS 169 (316)
Q Consensus 98 p~~~~~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVE--QaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvvRs 169 (316)
+...++-.-+.+.|++.+ |.+ -|..+|. ++.=..++++-++=+|- |.++++|+|..+.++
T Consensus 60 ~~~Lkdg~l~~~~l~~~~--------g~~---~f~f~vP~~~~~~~~~~l~v~~C~G~-V~v~i~r~gk~l~~~ 121 (300)
T PF10179_consen 60 PTRLKDGKLTQVKLKGKG--------GFK---FFSFKVPKRSSTHQSLWLFVQSCSGS-VRVEISRNGKILLSQ 121 (300)
T ss_pred cEEcccCcEEEEEECCcC--------cee---EEEEcCCcCCCCCccEEEEEEeCCCe-EEEEEEECCeEEeee
Confidence 334444445555555553 223 2777877 34555666766665555 888999999655443
No 86
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=21.22 E-value=1e+02 Score=30.49 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=52.8
Q ss_pred CCchhhhhhh--hcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCccccc---ccCC
Q psy10837 186 EDHKNLLLGF--NIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVS---KMTA 260 (316)
Q Consensus 186 ~D~rniliGl--~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~---k~~~ 260 (316)
++|+..+.-+ .+..++.+.++++|+... ||-=.+..|.+|....+...+..=.|....+..+.+. +...
T Consensus 63 ~~~~~~l~~y~~~hP~v~viDp~~~i~~l~------dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~ag 136 (307)
T PF05770_consen 63 EDWVQQLEEYIKKHPEVVVIDPPDAIRPLL------DRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAG 136 (307)
T ss_dssp CHHHHHHHHHHHH-TTSEEET-HHHHHHHC------CHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCeEEEcCHHHHHHHH------CHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCC
Confidence 5555555544 368899999999999999 9998888887877666666664434444442222211 1246
Q ss_pred CCCcEEEeecccccc
Q psy10837 261 PKYPVVFKIGHAHSG 275 (316)
Q Consensus 261 ~~fPvVVKvGhaH~G 275 (316)
-+||+|+|+=-||+-
T Consensus 137 L~fPlI~KPlvA~Gs 151 (307)
T PF05770_consen 137 LKFPLICKPLVACGS 151 (307)
T ss_dssp S-SSEEEEESB-SST
T ss_pred CcccEEeeehhhcCC
Confidence 799999999777643
No 87
>PF14343 PrcB_C: PrcB C-terminal
Probab=20.34 E-value=1.3e+02 Score=22.33 Aligned_cols=22 Identities=36% Similarity=0.612 Sum_probs=18.1
Q ss_pred hccccccccceeeEEeeeeece
Q psy10837 121 YFRGRRLHGDYDVRVEQAEFKE 142 (316)
Q Consensus 121 yFrgkkv~G~~~irVEQaeF~e 142 (316)
.|+|.|-.|.|.|+|+..+..+
T Consensus 6 v~~G~kptgGY~I~v~~v~~~~ 27 (60)
T PF14343_consen 6 VFYGEKPTGGYSIEVESVEETE 27 (60)
T ss_pred EEeccccCCCEEEEEEEEEEeC
Confidence 3788888999999998886663
No 88
>PF12852 Cupin_6: Cupin
Probab=20.16 E-value=1.9e+02 Score=25.02 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=37.9
Q ss_pred ccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeeeeeeeccEEEEeccc
Q psy10837 126 RLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNL 181 (316)
Q Consensus 126 kv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvvRsfkPDFVLiRq~a 181 (316)
.+.|.|.+++++.+ .+.+-.-..|.|.+.+ .++...++--..|+||+..+.
T Consensus 21 ~~~~~W~~~~~~~~--~~~fh~V~~G~~~l~~---~~~~~~~~L~~GDivllp~g~ 71 (186)
T PF12852_consen 21 ELCGPWGLRFPGSP--GASFHVVLRGSCWLRV---PGGGEPIRLEAGDIVLLPRGT 71 (186)
T ss_pred EEeCCcEEeccCCC--ceEEEEEECCeEEEEE---cCCCCeEEecCCCEEEEcCCC
Confidence 66899999999887 3656555578888864 222466777789999999775
Done!