Query psy10837
Match_columns 316
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:44:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pk8_A RAT synapsin I; ATP bin 100.0 1.9E-64 6.7E-69 493.5 20.1 271 25-315 15-327 (422)
2 1i7n_A Synapsin II; synapse, p 100.0 1.7E-52 6E-57 392.8 19.5 203 104-315 1-215 (309)
3 2p0a_A Synapsin-3, synapsin II 100.0 4.7E-49 1.6E-53 375.2 17.6 204 103-315 16-232 (344)
4 1uc8_A LYSX, lysine biosynthes 98.0 3.1E-06 1.1E-10 73.0 3.3 125 171-311 48-187 (280)
5 1z2n_X Inositol 1,3,4-trisphos 97.9 1.9E-05 6.7E-10 70.5 6.4 126 171-312 55-192 (324)
6 1iow_A DD-ligase, DDLB, D-ALA\ 97.6 8.7E-05 3E-09 65.1 7.1 125 170-311 53-196 (306)
7 1gsa_A Glutathione synthetase; 97.5 2.7E-05 9.4E-10 68.0 2.4 124 170-313 78-219 (316)
8 1e4e_A Vancomycin/teicoplanin 97.5 0.00061 2.1E-08 62.2 10.8 126 168-311 87-223 (343)
9 4eg0_A D-alanine--D-alanine li 97.5 0.00012 4.2E-09 65.9 5.9 127 169-310 63-204 (317)
10 2fb9_A D-alanine:D-alanine lig 97.4 0.00082 2.8E-08 61.2 10.5 123 170-310 75-208 (322)
11 3se7_A VANA; alpha-beta struct 97.4 0.0011 3.9E-08 60.8 11.4 127 167-311 86-223 (346)
12 3r5x_A D-alanine--D-alanine li 97.3 0.00028 9.4E-09 62.6 5.9 125 171-311 55-191 (307)
13 2i87_A D-alanine-D-alanine lig 97.2 0.00059 2E-08 62.9 7.3 125 170-310 86-228 (364)
14 1ehi_A LMDDL2, D-alanine:D-lac 97.2 0.00091 3.1E-08 62.5 8.1 126 170-310 92-232 (377)
15 3i12_A D-alanine-D-alanine lig 96.9 0.0022 7.4E-08 59.6 8.1 126 170-311 97-237 (364)
16 3ax6_A Phosphoribosylaminoimid 96.8 0.0024 8.1E-08 58.7 7.6 118 171-310 62-185 (380)
17 2pvp_A D-alanine-D-alanine lig 96.8 0.004 1.4E-07 58.4 8.6 116 171-302 107-235 (367)
18 3lwb_A D-alanine--D-alanine li 96.6 0.0031 1.1E-07 59.3 6.7 125 171-311 109-246 (373)
19 2vpq_A Acetyl-COA carboxylase; 96.5 0.0016 5.3E-08 61.4 4.0 127 168-310 70-215 (451)
20 3tqt_A D-alanine--D-alanine li 96.5 0.0072 2.5E-07 57.1 8.3 126 170-311 97-238 (372)
21 3ouz_A Biotin carboxylase; str 96.3 0.0033 1.1E-07 59.4 4.8 128 168-311 75-221 (446)
22 2q7d_A Inositol-tetrakisphosph 96.3 0.0041 1.4E-07 58.5 5.4 135 171-312 63-218 (346)
23 3e5n_A D-alanine-D-alanine lig 96.3 0.0037 1.3E-07 59.1 5.0 126 170-311 116-256 (386)
24 2ip4_A PURD, phosphoribosylami 96.2 0.0028 9.7E-08 59.0 4.0 122 168-309 58-194 (417)
25 2dzd_A Pyruvate carboxylase; b 96.0 0.0055 1.9E-07 58.0 4.7 127 168-310 76-221 (461)
26 2xcl_A Phosphoribosylamine--gl 95.9 0.0034 1.2E-07 58.5 2.9 121 168-308 59-198 (422)
27 1ulz_A Pyruvate carboxylase N- 95.8 0.0065 2.2E-07 57.2 4.5 127 168-310 70-215 (451)
28 3glk_A Acetyl-COA carboxylase 95.8 0.0037 1.3E-07 62.3 2.8 128 168-311 120-289 (540)
29 3jrx_A Acetyl-COA carboxylase 95.8 0.0051 1.8E-07 62.3 3.6 129 168-312 136-306 (587)
30 2yw2_A Phosphoribosylamine--gl 95.7 0.0049 1.7E-07 57.4 3.1 121 168-308 59-198 (424)
31 1kjq_A GART 2, phosphoribosylg 95.7 0.011 3.8E-07 54.0 5.4 121 169-308 72-208 (391)
32 2yrx_A Phosphoribosylglycinami 95.7 0.0066 2.3E-07 57.5 3.8 121 168-308 80-219 (451)
33 4fu0_A D-alanine--D-alanine li 95.6 0.039 1.3E-06 51.0 8.4 130 165-310 91-234 (357)
34 2dwc_A PH0318, 433AA long hypo 95.5 0.017 5.9E-07 54.0 6.0 123 169-309 80-217 (433)
35 3k3p_A D-alanine--D-alanine li 95.5 0.033 1.1E-06 52.8 8.0 125 171-310 119-258 (383)
36 2qk4_A Trifunctional purine bi 95.5 0.009 3.1E-07 56.5 3.9 122 168-309 85-226 (452)
37 4dim_A Phosphoribosylglycinami 95.2 0.023 7.9E-07 52.3 5.8 117 168-304 68-199 (403)
38 2w70_A Biotin carboxylase; lig 95.2 0.027 9.1E-07 53.0 6.3 127 168-310 71-217 (449)
39 3lp8_A Phosphoribosylamine-gly 95.2 0.012 4.1E-07 56.4 3.8 122 168-309 80-220 (442)
40 2r85_A PURP protein PF1517; AT 95.2 0.033 1.1E-06 49.3 6.3 87 194-302 80-182 (334)
41 3k5i_A Phosphoribosyl-aminoimi 95.1 0.015 5.2E-07 54.8 4.4 105 192-310 102-217 (403)
42 3aw8_A PURK, phosphoribosylami 94.9 0.07 2.4E-06 48.7 7.8 121 171-310 59-188 (369)
43 3mjf_A Phosphoribosylamine--gl 94.8 0.013 4.3E-07 55.9 2.8 125 168-310 64-205 (431)
44 3hbl_A Pyruvate carboxylase; T 94.7 0.039 1.3E-06 59.9 6.5 128 168-311 74-220 (1150)
45 1a9x_A Carbamoyl phosphate syn 94.6 0.022 7.4E-07 60.8 4.1 127 168-311 631-770 (1073)
46 3orq_A N5-carboxyaminoimidazol 94.4 0.082 2.8E-06 49.1 7.3 96 198-308 96-200 (377)
47 3u9t_A MCC alpha, methylcroton 94.3 0.026 9E-07 57.6 4.0 128 168-311 97-243 (675)
48 3df7_A Putative ATP-grAsp supe 94.2 0.094 3.2E-06 47.7 7.0 105 171-309 69-176 (305)
49 3n6r_A Propionyl-COA carboxyla 94.2 0.042 1.4E-06 56.2 5.0 127 170-312 73-218 (681)
50 2z04_A Phosphoribosylaminoimid 94.0 0.12 4.2E-06 46.9 7.3 117 171-310 57-184 (365)
51 3vmm_A Alanine-anticapsin liga 93.9 0.096 3.3E-06 50.9 6.9 112 168-299 99-233 (474)
52 3q2o_A Phosphoribosylaminoimid 93.9 0.051 1.7E-06 50.3 4.7 105 192-310 91-204 (389)
53 1vkz_A Phosphoribosylamine--gl 93.2 0.1 3.6E-06 48.8 5.5 121 168-309 67-203 (412)
54 2qf7_A Pyruvate carboxylase pr 92.9 0.061 2.1E-06 58.4 4.0 128 168-311 90-236 (1165)
55 3vot_A L-amino acid ligase, BL 92.9 0.29 9.9E-06 45.6 8.0 90 199-304 98-209 (425)
56 1w96_A ACC, acetyl-coenzyme A 92.5 0.084 2.9E-06 51.9 4.0 128 168-311 127-295 (554)
57 3ln6_A Glutathione biosynthesi 92.2 0.21 7.4E-06 51.9 6.8 100 198-311 468-581 (750)
58 2cqy_A Propionyl-COA carboxyla 91.8 0.12 4.2E-06 38.5 3.4 49 261-309 44-108 (108)
59 3va7_A KLLA0E08119P; carboxyla 91.6 0.095 3.3E-06 57.5 3.5 128 168-311 100-245 (1236)
60 4e4t_A Phosphoribosylaminoimid 91.4 0.24 8.2E-06 47.1 5.7 120 171-310 96-228 (419)
61 4ffl_A PYLC; amino acid, biosy 90.8 0.55 1.9E-05 42.7 7.2 89 195-311 84-176 (363)
62 2pn1_A Carbamoylphosphate synt 89.8 0.36 1.2E-05 42.8 5.0 123 168-309 69-201 (331)
63 1a9x_A Carbamoyl phosphate syn 89.2 0.18 6E-06 53.9 3.0 126 168-310 79-223 (1073)
64 3eth_A Phosphoribosylaminoimid 89.2 0.44 1.5E-05 44.8 5.4 119 171-309 42-168 (355)
65 3ln7_A Glutathione biosynthesi 88.1 0.56 1.9E-05 49.0 5.8 99 199-311 473-587 (757)
66 3t7a_A Inositol pyrophosphate 86.7 1.4 4.7E-05 42.5 7.0 125 171-313 57-221 (330)
67 1wr2_A Hypothetical protein PH 62.4 2.7 9.3E-05 36.5 1.5 86 218-310 19-129 (238)
68 2pbz_A Hypothetical protein; N 60.2 11 0.00037 35.2 5.2 82 195-298 79-167 (320)
69 3tig_A TTL protein; ATP-grAsp, 55.8 4.2 0.00014 39.4 1.7 100 200-308 62-209 (380)
70 2r7k_A 5-formaminoimidazole-4- 28.8 69 0.0024 30.1 5.2 62 195-278 105-166 (361)
71 2wh0_Q Pkcev3, protein kinase 24.8 26 0.00087 22.8 1.0 13 52-64 2-14 (31)
72 2nu8_B SCS-beta, succinyl-COA 20.6 69 0.0024 30.5 3.5 49 227-278 7-58 (388)
73 3ufx_B Succinyl-COA synthetase 20.0 68 0.0023 30.7 3.4 79 227-308 7-105 (397)
No 1
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=100.00 E-value=1.9e-64 Score=493.52 Aligned_cols=271 Identities=46% Similarity=0.829 Sum_probs=191.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCC-----------CCCCCccccchhhhhhcccc--ccccccccchhhhhhhh
Q psy10837 25 APPLPARTAGGPPSSGDLSLNLSKQSSRTT-----------SAPTSPAKTRESLLQRVQSL--TGQARDQGASIIGAMTQ 91 (316)
Q Consensus 25 ~~~lp~~~~~~~~~~~~~sl~l~~~~~~~t-----------SaPtSPA~~r~s~~q~~~~~--t~~~~~~gss~~ss~~~ 91 (316)
++||||||| +|||| ++.++ ++|+|||++|++..++.+|- ..+.+++|++|||++++
T Consensus 15 ~~~lp~gy~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 83 (422)
T 1pk8_A 15 MANLPNGYM----------TDLQR-PQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83 (422)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCCcccc----------cccCC-CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCccccCCCCCCCCCcchhhHHHH
Confidence 899999999 68888 65444 44589999999764332221 11234467788888874
Q ss_pred ----cc--c--------ccccccCc---CcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCee
Q psy10837 92 ----TA--S--------AARASYNK---DRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCV 154 (316)
Q Consensus 92 ----ta--~--------~~~p~~~~---~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~ 154 (316)
|+ + .+.|...+ +++|+||||||+|+||+|||||||+||+|+||||||||+||+|+++++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LLVid~~~~dw~K~f~~~~~~g~y~i~veqa~~~~i~l~~~~~~~~~ 163 (422)
T 1pk8_A 84 AVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFS 163 (422)
T ss_dssp -----------------------------CCEEEEEECCTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEE
T ss_pred HHHHHHHHhhcccccccCCCccccccccccceEEEEeccccchHHHHhcccccccchhhHHHHHhhcCceEEEEcCCcee
Confidence 33 1 11122333 2699999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCeeeeeeeeccEEEEeccccc--cCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHH
Q psy10837 155 VSMAVFRGGTKVVRSFKPDMILIRQNLRD--AGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQ 232 (316)
Q Consensus 155 Vd~~v~r~G~kvvRsfkPDFVLiRq~a~~--~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~ 232 (316)
|+++++|+|.+++|.++||+||+|..+.. ..++||+++.+|...|||++|++++|+++. ||+|+|.+++++.
T Consensus 164 v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~------DK~~vf~~~l~ll 237 (422)
T 1pk8_A 164 VDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFC------DKPWVFAQMVRLH 237 (422)
T ss_dssp EEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTS------SHHHHHHHHHHHH
T ss_pred EEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHHHHCCccccCCHHHHHHhC------CccHHHHHHHHHH
Confidence 99999999999999999999999999975 778999999999999999999999999999 9999999999999
Q ss_pred HHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccce
Q psy10837 233 RKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFD 302 (316)
Q Consensus 233 k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYD 302 (316)
+++|.++||++++++++++.++ +....||+|||+.++|.|.|. ++...+...+.|+.+|+||+.+||
T Consensus 238 ~~~gi~~iP~t~~t~~~~~~~~---i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~D 314 (422)
T 1pk8_A 238 KKLGTEEFPLIDQTFYPNHKEM---LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYD 314 (422)
T ss_dssp HHHCTTTSCBCCCEEESSGGGC---CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEE
T ss_pred HhCCCCCCCCCceEecCchhhh---hhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCce
Confidence 9999999999999999999998 666789999999999999999 344444456899999999999999
Q ss_pred eeeeccccccccC
Q psy10837 303 VHVQKIGSNYKAF 315 (316)
Q Consensus 303 IriQKIG~~YKay 315 (316)
|||+.||++|.+|
T Consensus 315 IRv~VVGg~vva~ 327 (422)
T 1pk8_A 315 VRVQKIGQNYKAY 327 (422)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEECCEEEEE
Confidence 9999999999876
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=100.00 E-value=1.7e-52 Score=392.85 Aligned_cols=203 Identities=57% Similarity=1.045 Sum_probs=191.7
Q ss_pred cceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeeeeeeeccEEEEeccccc
Q psy10837 104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRD 183 (316)
Q Consensus 104 ~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvvRsfkPDFVLiRq~a~~ 183 (316)
++|+||||||+|+||+||||||+++|+|+||||||||+||+|+++++++|.|+++++|+|.+++|.++||+||+|.++..
T Consensus 1 ~~k~llvid~~~~dw~k~f~~~~~~~~y~~~ve~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~ 80 (309)
T 1i7n_A 1 KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFG 80 (309)
T ss_dssp CEEEEEEECCTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCC
T ss_pred CceEEEEeccccchHHHHhhhhhhccchhhHHHHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEeccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred --cCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCC
Q psy10837 184 --AGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAP 261 (316)
Q Consensus 184 --~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~ 261 (316)
.+++||+++.+|...|+|++|+++||+++. ||+|+|.+++++.+++|.++||++++++++++.++ +...
T Consensus 81 ~~~~~~~r~vl~~le~~GvpviN~~~sI~~~~------DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~~---~~~~ 151 (309)
T 1i7n_A 81 MAENEDFRHLVIGMQYAGLPSINSLESIYNFC------DKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM---LTLP 151 (309)
T ss_dssp SSTTCCCHHHHHHHHHTTCCEESCHHHHHHTS------SHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGG---SSCC
T ss_pred ccccchHHHHHHHHHHCCccccCCHHHHHHhC------CccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhhh---hhcc
Confidence 788999999999999999999999999999 99999999999999999999999999999999998 6667
Q ss_pred CCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccceeeeeccccccccC
Q psy10837 262 KYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315 (316)
Q Consensus 262 ~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYDIriQKIG~~YKay 315 (316)
.||+|||+.++|.|.|. ++...+...++|..+|+||+.+|||||+.||++|.||
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VvGg~v~a~ 215 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAY 215 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEECCEEEEE
Confidence 89999999999999999 3344445567999999999999999999999999876
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=375.16 Aligned_cols=204 Identities=57% Similarity=1.036 Sum_probs=182.9
Q ss_pred CcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeee-eeeeccEEEEeccc
Q psy10837 103 DRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV-RSFKPDMILIRQNL 181 (316)
Q Consensus 103 ~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvv-RsfkPDFVLiRq~a 181 (316)
.|.|+||||||+|+||.||||++++||+|+||||||||+|++++++++++|.|++.++|+|++++ |.|+||+||+|+.+
T Consensus 16 ~~~ki~lv~d~~~~~w~~~f~~~~~~g~y~i~veqa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~ 95 (344)
T 2p0a_A 16 QRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHA 95 (344)
T ss_dssp -CCEEEEEECCSSCCGGGGGTTCEETTTEEEEEEEECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCS
T ss_pred cccEEEEEecCCcchHHHHHhhhccCCchhhhhhhhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccc
Confidence 46899999999999999999999999999999999999999999999999999999999998888 99999999999999
Q ss_pred cc--cCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccC
Q psy10837 182 RD--AGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMT 259 (316)
Q Consensus 182 ~~--~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~ 259 (316)
.. .+++||+++.+|...|+|++|+++||+++. ||+|+|.+++++.+++|.++||++++++++++.++ +.
T Consensus 96 ~~~~~~~~yr~vl~~le~~GvpviN~~~sI~~~~------DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~~---~~ 166 (344)
T 2p0a_A 96 YSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFC------SKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPM---VT 166 (344)
T ss_dssp EEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTT------CHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTTC---CC
T ss_pred cccccchhHHHHHHHHHHCCceecCCHHHHHhhC------CchHHHHHHHHHHHHCCCCCCCCCCEEecCchhhh---hh
Confidence 54 678999999999999999999999999999 99999999999999999999999999999999999 66
Q ss_pred CCCCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccceeeeeccccccccC
Q psy10837 260 APKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315 (316)
Q Consensus 260 ~~~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYDIriQKIG~~YKay 315 (316)
...||+|||+.++|.|.|. ++.+.++..++|..+|+||+.+|||||+.||++|.+|
T Consensus 167 ~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VVGg~vva~ 232 (344)
T 2p0a_A 167 APHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAY 232 (344)
T ss_dssp CSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEE
T ss_pred ccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccCCCccEEEEEECCEEEEE
Confidence 6789999999999999999 4444555668999999999999999999999999876
No 4
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.98 E-value=3.1e-06 Score=72.97 Aligned_cols=125 Identities=19% Similarity=0.132 Sum_probs=80.3
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn 250 (316)
++|++++|.+... ++ ..+..-+...|+|.+|+.+++..+. ||.+ +.++.++.| +|.-+.....+
T Consensus 48 ~~d~~~~~~~~~~--~~-~~~~~~l~~~g~~~~~~~~~~~~~~------dK~~----~~~~l~~~g---i~~p~~~~~~~ 111 (280)
T 1uc8_A 48 GVTVALERCVSQS--RG-LAAARYLTALGIPVVNRPEVIEACG------DKWA----TSVALAKAG---LPQPKTALATD 111 (280)
T ss_dssp TCCEEEECCSSHH--HH-HHHHHHHHHTTCCEESCHHHHHHHH------BHHH----HHHHHHHTT---CCCCCEEEESS
T ss_pred CCCEEEECCccch--hh-HHHHHHHHHCCCceeCCHHHHHHhC------CHHH----HHHHHHHcC---cCCCCeEeeCC
Confidence 6888888865421 11 1334445667999999999999999 9984 444555778 88655555554
Q ss_pred CcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh----c---ceeeeecccccc-cceeeeeccccc
Q psy10837 251 FKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV----A---NTYCTTEPYIDS-KFDVHVQKIGSN 311 (316)
Q Consensus 251 ~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~----~---~tY~TtEPfId~-kYDIriQKIG~~ 311 (316)
..+...-+..-.||+|||+-.+++|.|= |+...+.- . ..-+-.|+||+. .+|+++.-+++.
T Consensus 112 ~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~ 187 (280)
T 1uc8_A 112 REEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187 (280)
T ss_dssp HHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEETTE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEECCE
Confidence 4443111122368999999888887764 44444422 2 356789999997 899999887764
No 5
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.86 E-value=1.9e-05 Score=70.51 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=83.4
Q ss_pred eccEEEEeccccccCCCchhhhhhhhc--CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNI--GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y--~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
++|.|+.|-+. ....+...+..+.. .|+|.+|+.+++..+. ||.+ +.++.+++| +|.-+....
T Consensus 55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~------dK~~----~~~~l~~~g---i~~P~~~~~ 119 (324)
T 1z2n_X 55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLFLESSAIHDMMS------SREE----INALLIKNN---IPIPNSFSV 119 (324)
T ss_dssp CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEEETCHHHHHHHT------BHHH----HHHHHHHTT---CCCSCEEEE
T ss_pred CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeEeCCHHHHHHHh------CHHH----HHHHHHHCC---CCCCCEEEe
Confidence 68999887643 22345555555544 8999999999999999 9973 344445678 886555555
Q ss_pred CCCcccccccCC--CCCcEEEeecccccc---Ccc----chhhhhhhcceeeeecccccc-cceeeeecccccc
Q psy10837 249 PNFKEMVSKMTA--PKYPVVFKIGHAHSG---FGK----DMAGVVAVANTYCTTEPYIDS-KFDVHVQKIGSNY 312 (316)
Q Consensus 249 pn~~~m~~k~~~--~~fPvVVKvGhaH~G---~GK----Diasvva~~~tY~TtEPfId~-kYDIriQKIG~~Y 312 (316)
.+..+....+.. -.||+|||+-.+++| .|- +.+.+-. .+..+-.|+||+. .+|+|+.-+|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-~~~~~lvqe~i~~~g~~~~v~v~g~~~ 192 (324)
T 1z2n_X 120 KSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD-IHFPCLCQHYINHNNKIVKVFCIGNTL 192 (324)
T ss_dssp SSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT-CCSSEEEEECCCCTTCEEEEEEETTEE
T ss_pred CCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh-cCCCEEEEEccCCCCcEEEEEEECCEE
Confidence 444333111112 359999999877776 443 3333322 2456789999985 7999998888753
No 6
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.65 E-value=8.7e-05 Score=65.07 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=81.4
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.+.|.. .+||. .+...+...|+|.+ |+.+++..+. ||-+ +.++.+++| +|..+...+
T Consensus 53 ~~~d~v~~~~~~~-~~e~~-~~~~~~e~~g~~~~g~~~~~~~~~~------dK~~----~~~~l~~~g---i~~p~~~~~ 117 (306)
T 1iow_A 53 MGFQKVFIALHGR-GGEDG-TLQGMLELMGLPYTGSGVMASALSM------DKLR----SKLLWQGAG---LPVAPWVAL 117 (306)
T ss_dssp TTEEEEEECCCST-TTSSS-HHHHHHHHHTCCBSSCCHHHHHHHH------CHHH----HHHHHHHTT---CCBCCEEEE
T ss_pred cCCCEEEEcCCCC-CCcch-HHHHHHHHcCCCccCCCHHHHHHHc------CHHH----HHHHHHHCC---CCCCCeEEE
Confidence 4689999887653 23441 12223455699987 7899999999 9973 444455778 886655554
Q ss_pred CCCccccc--------ccCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeecccc
Q psy10837 249 PNFKEMVS--------KMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 249 pn~~~m~~--------k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+. +... -...-.||+|||+-.+.+|.|= |+...+.- ...-+-.|+||+ ..+++|.-+|+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~-g~e~~v~~~~g 195 (306)
T 1iow_A 118 TRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGE 195 (306)
T ss_dssp EHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC-CCEEEEEEETT
T ss_pred chh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC-CEEEEEEEECC
Confidence 443 3211 0224579999999888887775 44444422 145678899999 57888887765
Q ss_pred c
Q psy10837 311 N 311 (316)
Q Consensus 311 ~ 311 (316)
.
T Consensus 196 ~ 196 (306)
T 1iow_A 196 E 196 (306)
T ss_dssp E
T ss_pred C
Confidence 3
No 7
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.55 E-value=2.7e-05 Score=68.02 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=79.8
Q ss_pred eeccEEEEeccccccCCCc--h-hhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 170 FKPDMILIRQNLRDAGEDH--K-NLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~--r-niliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
-++|+|+.|.+... ++.+ . .++.-+...|+|.+|+.+++..+. ||.+.+..| + |+ +.|
T Consensus 78 ~~~d~v~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~------dK~~~~~~l-~----------~~-P~t 138 (316)
T 1gsa_A 78 ADLDVILMRKDPPF-DTEFIYATYILERAEEKGTLIVNKPQSLRDCN------EKLFTAWFS-D----------LT-PET 138 (316)
T ss_dssp GGSSEEEECCCCCC-CHHHHHHHHHHHHHHHTTCEEESCHHHHHHCC------TTGGGGGGT-T----------TS-CCE
T ss_pred ccCCEEEEecCCCC-chhhHHHHHHHHHHHHcCCeEecCHHHHHhhh------hHHHHHhhh-h----------cC-CCe
Confidence 36999999987642 1222 2 445556678999999999999989 998655433 2 33 344
Q ss_pred ecC-CCcccccccCCCCCcEEEeeccccccCcc--------chhhhhh-h---cceeeeecccccc--cceeeeeccccc
Q psy10837 247 YYP-NFKEMVSKMTAPKYPVVFKIGHAHSGFGK--------DMAGVVA-V---ANTYCTTEPYIDS--KFDVHVQKIGSN 311 (316)
Q Consensus 247 ~yp-n~~~m~~k~~~~~fPvVVKvGhaH~G~GK--------Diasvva-~---~~tY~TtEPfId~--kYDIriQKIG~~ 311 (316)
+.. +..+...-+..-. |+|||+-.+++|.|- |+..++. + ....+-.|+||+. .||+|+.-+|++
T Consensus 139 ~~~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~ 217 (316)
T 1gsa_A 139 LVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGE 217 (316)
T ss_dssp EEESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTE
T ss_pred EEeCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCE
Confidence 433 3222210011123 999999888888774 4444332 1 1356889999996 899999988876
Q ss_pred cc
Q psy10837 312 YK 313 (316)
Q Consensus 312 YK 313 (316)
..
T Consensus 218 ~~ 219 (316)
T 1gsa_A 218 PV 219 (316)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.50 E-value=0.00061 Score=62.19 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=84.2
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|+..-|-. .+||- .+--.+...|+|.+ ++..++..+. ||- .+.++.+++| +|..+..
T Consensus 87 ~~~~~D~v~~~~~g~-~ged~-~~~~~le~~gip~~g~~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~ 151 (343)
T 1e4e_A 87 EINHVDVAFSALHGK-SGEDG-SIQGLFELSGIPFVGCDIQSSAICM------DKS----LTYIVAKNAG---IATPAFW 151 (343)
T ss_dssp EEEECSEEEECCCST-TTTSS-HHHHHHHHHTCCBSSCCHHHHHHHH------SHH----HHHHHHHHTT---CBCCCEE
T ss_pred ccccCCEEEEeCCCC-CCcCH-HHHHHHHHcCCCccCCCHHHHHHHh------CHH----HHHHHHHHCC---CCcCCEE
Confidence 346899999998765 34442 24444567799998 5688998888 987 4445556788 8876666
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
...+..+. . ...-.||+|||+-+..+|.|= |+...+... +.-+-.|+||+- .+++|.-++++
T Consensus 152 ~~~~~~~~-~-~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~ 223 (343)
T 1e4e_A 152 VINKDDRP-V-AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSG-CEVGCAVLGNS 223 (343)
T ss_dssp EECTTCCC-C-GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCCS-EEEEEEEEEET
T ss_pred EEechhhh-h-hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcCC-eEEEEEEEeCC
Confidence 66554443 1 123469999999888887775 554444322 345789999994 46666655543
No 9
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=97.48 E-value=0.00012 Score=65.91 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=84.0
Q ss_pred eeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 169 SFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
..++|+|+..-|-. .+||- .+---+...|+|.+ |+..++..+. ||. .+.++.+++| +|..+...
T Consensus 63 ~~~~D~v~~~~hg~-~ge~~-~~~~~le~~gip~~g~~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~ 127 (317)
T 4eg0_A 63 DEGFVRAFNALHGG-YGENG-QIQGALDFYGIRYTGSGVLGSALGL------DKF----RTKLVWQQTG---VPTPPFET 127 (317)
T ss_dssp HTTCCEEEECCCSG-GGTSS-HHHHHHHHHTCEESSCCHHHHHHHH------CHH----HHHHHHHHTT---CCCCCEEE
T ss_pred hcCCCEEEEcCCCC-CCchH-HHHHHHHHcCCCeeCcCHHHHHHHh------CHH----HHHHHHHHCC---cCCCCEEE
Confidence 35789999988764 34552 34555667899998 4678999888 988 4455556888 88877776
Q ss_pred cCCCccccccc----CCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeecccc
Q psy10837 248 YPNFKEMVSKM----TAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 248 ypn~~~m~~k~----~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+..+..... ..-.||+|||+-...+|.|- |+...+.. ...-+-.|+||+.-.+++|.-+|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G~E~~v~vl~~ 204 (317)
T 4eg0_A 128 VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGGGEYTACIAGD 204 (317)
T ss_dssp EETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSSEEEEEEEETT
T ss_pred EECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCCcEEEEEEECC
Confidence 66655431111 23479999999888888776 44444422 235688999999667888877776
No 10
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.42 E-value=0.00082 Score=61.23 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=82.7
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.+-|-. .+||- .+---+...|+|.+|+ ..++..+. ||- .+.++.++.| +|..+....
T Consensus 75 ~~~D~v~~~~hg~-~gedg-~i~~~le~~gip~~g~~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~~ 139 (322)
T 2fb9_A 75 ERYDVVFPLLHGR-FGEDG-TVQGFLELLGKPYVGAGVAASALCM------DKD----LSKRVLAQAG---VPVVPWVAV 139 (322)
T ss_dssp TTCSEEEEECCST-TTTSS-HHHHHHHHHTCCBSSCCHHHHHHHH------CHH----HHHHHHHHTT---CCCCCEEEE
T ss_pred cCCCEEEEeCCCC-CCccH-HHHHHHHHcCCCeeCcCHHHHHHHc------CHH----HHHHHHHHCC---CCCCCEEEE
Confidence 5799999998754 34442 3334466789999965 88888888 987 4445555788 777665554
Q ss_pred CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeecccc
Q psy10837 249 PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 249 pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+..+- .. .-.||+|||+-...+|.|= |+...+..+ +.-+-.|+||+-..+++|.-+|+
T Consensus 140 ~~~~~~--~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~ 208 (322)
T 2fb9_A 140 RKGEPP--VV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGN 208 (322)
T ss_dssp ETTSCC--CC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEEEEESS
T ss_pred ECchhh--hh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEEEEEeC
Confidence 443321 12 4569999999777777665 444444322 35688999999756777776665
No 11
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=97.41 E-value=0.0011 Score=60.75 Aligned_cols=127 Identities=20% Similarity=0.285 Sum_probs=87.6
Q ss_pred eeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceee
Q psy10837 167 VRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDI 245 (316)
Q Consensus 167 vRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Q 245 (316)
++..++|+|+..-|-. .+||- .+---|...|||.+++ ..++..+. ||. .+.++.+++| +|.-+.
T Consensus 86 ~~~~~~D~v~~~lhG~-~gedg-~iq~~le~~gip~~g~~~~a~~~~~------dK~----~~k~~l~~~G---ip~p~~ 150 (346)
T 3se7_A 86 YETIRLDLVLPVLHGK-LGEDG-AIQGLLELSGIPYVGCDIQSSALCM------DKS----LTYLVARSAG---IATPNF 150 (346)
T ss_dssp EEEEECSEEEECCCST-TTTSS-HHHHHHHHHCCCBSSCCHHHHHHHH------SHH----HHHHHHHHTT---CBCCCE
T ss_pred ccccCCCEEEEccCCC-CCCCh-HHHHHHHHcCCCeeCcCHHHHHHHh------CHH----HHHHHHHHcC---cCcCCE
Confidence 4567899999988764 34442 3344456789999885 78888888 998 5555666888 887776
Q ss_pred eecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 246 TYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 246 t~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
....+..+. ....-.||+|||+-++.+|.|= |+...+..+ +.-+-.|+||+ -.+++|.-++++
T Consensus 151 ~~~~~~~~~--~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~E~~v~vl~~~ 223 (346)
T 3se7_A 151 WTVTADEKI--PTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI-GTEIGCAVMGNG 223 (346)
T ss_dssp EEEETTSCC--CTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEEEET
T ss_pred EEEcCcHHH--HHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC-CEEEEEEEEecC
Confidence 666554321 1345679999999888887775 444444322 35688999999 467777777663
No 12
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.31 E-value=0.00028 Score=62.58 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+.+.|..- ++|- .+.--+...|+|.+|+ ..++..+. ||. .+.++.+++| +|..+.....
T Consensus 55 ~~D~v~~~~~~~~-ge~~-~~~~~le~~gi~~~g~~~~~~~~~~------dK~----~~~~~l~~~G---ip~p~~~~~~ 119 (307)
T 3r5x_A 55 DIDFALLALHGKY-GEDG-TVQGTLESLGIPYSGSNMLSSGICM------DKN----ISKKILRYEG---IETPDWIELT 119 (307)
T ss_dssp TCSEEEECCCSHH-HHSS-HHHHHHHHHTCCBSSSCHHHHHHHH------CHH----HHHHHHHHTT---CCCCCEEEEE
T ss_pred CCCEEEEeCCCCC-CcHH-HHHHHHHHcCCCeeCcCHHHHHHHc------CHH----HHHHHHHHCC---CCCCCEEEEe
Confidence 7899999887642 1221 2223456779999975 89999999 998 4445556788 8877766666
Q ss_pred CCccccc-ccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 250 NFKEMVS-KMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 250 n~~~m~~-k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
+..+... ....-.||+|||+-...+|.|= |+...+.-. ..-+-.|+||+- .+++|.-++++
T Consensus 120 ~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~G-~e~~v~v~~g~ 191 (307)
T 3r5x_A 120 KMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKG-EEITCSIFDGK 191 (307)
T ss_dssp SSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEETTE
T ss_pred ChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcCC-EEEEEEEECCE
Confidence 5444311 0223479999999888887775 444433221 356889999995 67777767653
No 13
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.22 E-value=0.00059 Score=62.92 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.+||+|+.+-|-. .+|| ..+...+...|+|.+|+ ..++..+. ||- .+.++.+++| +|..+....
T Consensus 86 ~~~D~v~~~~~g~-~~ed-~~~~~~le~~gip~~g~~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~~ 150 (364)
T 2i87_A 86 QPYDAVFPLLHGP-NGED-GTIQGLFEVLDVPYVGNGVLSAASSM------DKL----VMKQLFEHRG---LPQLPYISF 150 (364)
T ss_dssp SBCSEEEEECCCS-SSCT-THHHHHHHHHTCCBSSCCHHHHHHHH------SHH----HHHHHHHHHT---CCCCCEEEE
T ss_pred cCCCEEEEeCCCC-CCcC-HHHHHHHHHcCCCccCCCHHHHHHHc------CHH----HHHHHHHHCC---CCCCCEEEE
Confidence 5799999998654 2344 23444466779999975 88999888 987 4445555788 776555444
Q ss_pred CCCc-------ccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeecccc
Q psy10837 249 PNFK-------EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 249 pn~~-------~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+.. +...-...-.||+|||+-...+|.|= |+...+.. .+.-+-+|+||+- .+++|.-+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~ 228 (364)
T 2i87_A 151 LRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNA-REIEVAVLGN 228 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCCC-EEEEEEEEES
T ss_pred echhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCccC-eEEEEEEEcC
Confidence 3322 11000123479999999877777775 44444422 2456889999994 5777766664
No 14
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=97.17 E-value=0.00091 Score=62.47 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=85.7
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+..-|-. .++|- .+--.+...|||.+ |+..++..+. ||- .+.++.+++| +|..+....
T Consensus 92 ~~~D~v~~~~~g~-~gedg-~~~~lle~~gip~~G~~~~a~~~~~------DK~----~~k~~l~~~G---ip~p~~~~~ 156 (377)
T 1ehi_A 92 GDFDIFFPVVHGN-LGEDG-TLQGLFKLLDKPYVGAPLRGHAVSF------DKA----LTKELLTVNG---IRNTKYIVV 156 (377)
T ss_dssp CCCSEEEEECCST-TTSSS-HHHHHHHHTTCCBSSCCHHHHHHHH------SHH----HHHHHHHTTT---CCCCCEEEE
T ss_pred cCCCEEEEecCCC-CCcCH-HHHHHHHHcCCCEeCcCHHHHHHHc------CHH----HHHHHHHHcC---CCCCCEEEE
Confidence 4799999998764 23442 33344677899998 8999999999 997 4555566888 887776666
Q ss_pred CCCccc---ccc-cCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeecccc
Q psy10837 249 PNFKEM---VSK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 249 pn~~~m---~~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+..+. +.+ ...-.||+|||+-...+|.|= |+...+..+ +.-+-.|+||+-..+++|.-+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~ 232 (377)
T 1ehi_A 157 DPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGN 232 (377)
T ss_dssp CTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEEEEEES
T ss_pred eccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEEEEEcC
Confidence 654331 101 112469999999877777775 444444222 34578999999757888877665
No 15
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=96.92 E-value=0.0022 Score=59.64 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=84.2
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.--|-. .+||- .+--.|...|||.+++ ..++..+. ||- .+.++.++.| +|..+....
T Consensus 97 ~~~D~vf~~lhG~-~gEdg-~iq~~le~~gip~~G~~~~a~~~~~------DK~----~~k~~l~~~G---ip~p~~~~~ 161 (364)
T 3i12_A 97 PTVDVIFPIVHGT-LGEDG-SLQGMLRVANLPFVGSDVLSSAACM------DKD----VAKRLLRDAG---LNIAPFITL 161 (364)
T ss_dssp CCCSEEEECCCST-TTTSS-HHHHHHHHTTCCBSSCCHHHHHHHH------CHH----HHHHHHHHTT---CCBCCEEEE
T ss_pred CCCCEEEEeCCCC-CCcCH-HHHHHHHHcCCCccCCCHHHHHHHH------CHH----HHHHHHHHCC---CCCCCEEEE
Confidence 5799999887654 34442 3344556889999874 78888888 988 5566667888 888776666
Q ss_pred CCCc----ccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 249 PNFK----EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 pn~~----~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
.+.. +.......-.||+|||+=+..+|.|= |+...+.. .+.-+-.|+||+- .++.|.-+++.
T Consensus 162 ~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~ 237 (364)
T 3i12_A 162 TRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKG-REIECAVLGND 237 (364)
T ss_dssp ETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESS
T ss_pred EccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcCC-eEEEEEEEeCC
Confidence 6544 22100223469999999888777775 44443322 2356889999997 67777666543
No 16
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=96.84 E-value=0.0024 Score=58.67 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred eccEEEEeccccccCCCc-hhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDH-KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~-rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|.|+.-. |+. -.++.-+...|+|..|+.+++..+. ||-+. .++.+++| +|.-+...+.
T Consensus 62 ~~d~v~~~~------e~~~~~~~~~l~~~gi~~~~~~~~~~~~~------dK~~~----~~~l~~~g---ip~p~~~~~~ 122 (380)
T 3ax6_A 62 GSDVTTYDL------EHIDVQTLKKLYNEGYKIHPSPYTLEIIQ------DKFVQ----KEFLKKNG---IPVPEYKLVK 122 (380)
T ss_dssp TCSEEEESC------SCSCHHHHHHHHHTTCEESSCHHHHHHHH------SHHHH----HHHHHHTT---CCCCCEEECS
T ss_pred cCCEEEecc------cCCCHHHHHHHHHCCCeECCCHHHHHHhc------CHHHH----HHHHHHcC---CCCCCeEEeC
Confidence 578776522 222 2234455678999889999999999 99844 34445778 8876655555
Q ss_pred CCcccccccCCCCCcEEEeecccc-ccCcc----chhhhhhhcceeeeecccccccceeeeecccc
Q psy10837 250 NFKEMVSKMTAPKYPVVFKIGHAH-SGFGK----DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 250 n~~~m~~k~~~~~fPvVVKvGhaH-~G~GK----Diasvva~~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
+..++ +..-.||+|||+-... +|.|= |.+.+.+....-+-.|+||+.-.++++.-+++
T Consensus 123 ~~~~~---~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~~g~e~sv~~~~~ 185 (380)
T 3ax6_A 123 DLESD---VREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKGETYLEEFVEIEKELAVMVARN 185 (380)
T ss_dssp SHHHH---HHTTCSSEEEEESCCC-----EEEECSGGGGGGCCCSSEEEEECCCEEEEEEEEEEEC
T ss_pred CHHHH---HHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhcCCEEEEeccCCCeeEEEEEEEC
Confidence 54443 3345799999997766 66664 44444322225678999999667788777654
No 17
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=96.76 E-value=0.004 Score=58.44 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=78.2
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+..-|-. .++|- .+--.+...|+|.+ |+..++..+. ||. .+.++.+++| +|..+.....
T Consensus 107 ~~D~v~~~lhg~-~gedg-~i~~~le~~gip~~G~~~~a~~~~~------DK~----~~k~~l~~~G---ip~p~~~~~~ 171 (367)
T 2pvp_A 107 ELPLVINLVHGG-DGEDG-KLASLLEFYRIAFIGPRIEASVLSY------NKY----LTKLYAKDLG---IKTLDYVLLN 171 (367)
T ss_dssp ECCSEEECCCST-TTTSS-HHHHHHHHTTCCEESCCHHHHHHHH------SHH----HHHHHHHHHT---CBCCCCEEEC
T ss_pred CCCEEEEcCCCC-CccHH-HHHHHHHHcCCCccCCCHHHHHHHc------CHH----HHHHHHHHCC---cCCCCEEEEe
Confidence 799999987764 23442 23344567899998 6788999989 997 4555666888 8876665555
Q ss_pred CCc--ccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccce
Q psy10837 250 NFK--EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFD 302 (316)
Q Consensus 250 n~~--~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYD 302 (316)
+.. +... ...-.||+|||+-...+|.|= |+...+..+ +.-+-.|+||+-..+
T Consensus 172 ~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E 235 (367)
T 2pvp_A 172 EKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKE 235 (367)
T ss_dssp TTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEE
T ss_pred CCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCce
Confidence 543 3211 234579999999877777775 555544322 346789999996445
No 18
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=96.61 E-value=0.0031 Score=59.27 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=84.5
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCc-hhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINT-LQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNS-L~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+.--|-. .+||- .+--.|...|||.+++ ..++..+. ||- .+.++.+++| +|..+.....
T Consensus 109 ~~D~vfp~lhG~-~gEdg-~iq~lle~~gip~vG~~~~a~~~~~------DK~----~~k~~l~~~G---Ip~p~~~~~~ 173 (373)
T 3lwb_A 109 SVDVVFPVLHGP-YGEDG-TIQGLLELAGVPYVGAGVLASAVGM------DKE----FTKKLLAADG---LPVGAYAVLR 173 (373)
T ss_dssp TCSEEEECCEET-TEECC-HHHHHHHHHTCCBSSSCHHHHHHHH------BHH----HHHHHHHHTT---CCBCCEEEEC
T ss_pred CccEEEECCCCC-CCccH-HHHHHHHHcCCCccCCcHHHHHHHc------CHH----HHHHHHHHcC---cCCCCEEEEE
Confidence 699999887764 34442 2334456789999986 78888888 998 5555666888 8887777666
Q ss_pred CCccc--ccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 250 NFKEM--VSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 250 n~~~m--~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
+..+. ......-.||+|||+=+..+|.|= |+...+..+ +.-+-+|+||+- .+++|.-+|+.
T Consensus 174 ~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~ 246 (373)
T 3lwb_A 174 PPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISG-RELECGVLEMP 246 (373)
T ss_dssp TTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCEE-EEEEEEEEECT
T ss_pred CcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCCC-eEEEEEEEECC
Confidence 54431 001123469999999887777775 554444332 355889999994 66766666654
No 19
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.51 E-value=0.0016 Score=61.41 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=82.5
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+.. .|+ ..+...+...|+|.++ +.+++..+. ||-+. .++.+++| +|..+.+
T Consensus 70 ~~~~~d~v~~~~g~~--~e~-~~~~~~~~~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~~~ 133 (451)
T 2vpq_A 70 TSTGCDGVHPGYGFL--AEN-ADFAELCEACQLKFIGPSYQSIQKMG------IKDVA----KAEMIKAN---VPVVPGS 133 (451)
T ss_dssp HHTTCSEEECCSSTT--TTC-HHHHHHHHTTTCEESSSCHHHHHHHH------SHHHH----HHHHHHTT---CCBCSBC
T ss_pred HHcCCCEEEECCCcc--ccC-HHHHHHHHHcCCeEECCCHHHHHHhc------CHHHH----HHHHHHcC---CCcCCCc
Confidence 446788888764322 122 1245556678999765 799999999 99844 44455778 8887765
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
.+.+..+...-...-.||+|||+=...+|.|= |+...+.. .+.-+-.|+||+-..+++++-+
T Consensus 134 ~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 213 (451)
T 2vpq_A 134 DGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIV 213 (451)
T ss_dssp SSCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEE
T ss_pred ccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEE
Confidence 45554443211223479999999777777664 44444421 1356889999997677877776
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 214 ~~ 215 (451)
T 2vpq_A 214 GD 215 (451)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 20
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=96.48 E-value=0.0072 Score=57.05 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=83.7
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.--|-. .+||- .+--.|...|||.++ +..++..+. ||- .+.++.+++| +|..+....
T Consensus 97 ~~~D~vf~~lhG~-~gEdg-~iq~lle~~gipy~G~~~~a~~~~~------DK~----~~k~~l~~~G---Ip~p~~~~~ 161 (372)
T 3tqt_A 97 YSADCVFPMVHGT-QGEDG-ALQGLLELLNLPYVGANVQSSAVCM------EKD----LTKTVLRAGG---IPVVDWHTL 161 (372)
T ss_dssp ECCSEEEECCCST-TTTSS-HHHHHHHHTTCCBSSCCHHHHHHHH------SHH----HHHHHHHHTT---CCBCCCEEE
T ss_pred cCCCEEEEcCCCC-CCcCH-HHHHHHHHcCCCeeCcCHHHHHHHh------CHH----HHHHHHHHCC---cCCCCEEEE
Confidence 4799999988875 45553 345556788999986 577888888 998 5555666888 888776666
Q ss_pred CCCccc---c-cccCCCCCc-EEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 249 PNFKEM---V-SKMTAPKYP-VVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 pn~~~m---~-~k~~~~~fP-vVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
.+..+. + .-...-.|| +|||+-+..+|.|- |+...+..+ +.-+-.|+||+. .+++|.-+|+.
T Consensus 162 ~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~ 238 (372)
T 3tqt_A 162 SPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRG-REIECAVLGNG 238 (372)
T ss_dssp CTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCCS-EEEEEEEEESS
T ss_pred echhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCCC-EEEEEEEEeCC
Confidence 654420 0 002235799 99999888877775 444444222 356889999994 67777777654
No 21
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=96.31 E-value=0.0033 Score=59.40 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=83.1
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+...++. .+...+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+..
T Consensus 75 ~~~~~d~i~p~~g~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~------dK~----~~~~~l~~~G---ip~p~~~ 138 (446)
T 3ouz_A 75 EIAEADAIFPGYGFLSENQ---NFVEICAKHNIKFIGPSVEAMNLMS------DKS----KAKQVMQRAG---VPVIPGS 138 (446)
T ss_dssp HHHTCSEEECCSSTTTTCH---HHHHHHHHTTCEESSCCHHHHHHHH------SHH----HHHHHHHHTT---CCBCSBC
T ss_pred HHhCcCEEEECCcccccCH---HHHHHHHHCCCceECcCHHHHHHhC------CHH----HHHHHHHHcC---CCcCCCc
Confidence 4456888775432222222 23445566799987 7999999999 997 4444556888 8877665
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
..-+..+.......-.||+|||+=.+.+|.|= |+...+... +.-+-.|.||+-..++.++-+
T Consensus 139 ~~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 218 (446)
T 3ouz_A 139 DGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVI 218 (446)
T ss_dssp SSSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEE
Confidence 34444443211223469999999777777665 554444321 456889999998778888877
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 219 ~d~ 221 (446)
T 3ouz_A 219 GDS 221 (446)
T ss_dssp ECT
T ss_pred EcC
Confidence 654
No 22
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=96.29 E-value=0.0041 Score=58.52 Aligned_cols=135 Identities=11% Similarity=0.221 Sum_probs=79.9
Q ss_pred eccEEEEecccccc---CCC----c-hhhhhhhh--cCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcc
Q psy10837 171 KPDMILIRQNLRDA---GED----H-KNLLLGFN--IGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENF 240 (316)
Q Consensus 171 kPDFVLiRq~a~~~---~~D----~-rniliGl~--y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~F 240 (316)
.+|.||.|-|.... +.| + -..|.-+. ..|+|.+|+.+++.++. ||--....|.+.....+...+
T Consensus 63 ~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~------dk~~~~~~L~k~~~~~~~~gI 136 (346)
T 2q7d_A 63 PLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLL------DRSKSYELIRKIEAYMEDDRI 136 (346)
T ss_dssp CCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTT------BHHHHHHHHHHHHHHHCBTTE
T ss_pred CCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhh------hHHHHHHHHHhhcccccCCCC
Confidence 68999999877411 112 2 11222222 56999999999999999 998443333332211133337
Q ss_pred cceeeeecCCC--ccccccc--CCCCCcEEEee--ccccccCc--c--chhhhhhhcceeeeeccccc-ccceeeeeccc
Q psy10837 241 PLIDITYYPNF--KEMVSKM--TAPKYPVVFKI--GHAHSGFG--K--DMAGVVAVANTYCTTEPYID-SKFDVHVQKIG 309 (316)
Q Consensus 241 PLI~Qt~ypn~--~~m~~k~--~~~~fPvVVKv--GhaH~G~G--K--Diasvva~~~tY~TtEPfId-~kYDIriQKIG 309 (316)
|.=.+....+. .+....+ ..-.||+|||+ |++..+.| + |.+.+-.+ +.-+-.|-||+ .-+||||-=||
T Consensus 137 p~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-~~~~lvQefI~~~G~dirv~VvG 215 (346)
T 2q7d_A 137 CSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-QPPCVVQNFINHNAVLYKVFVVG 215 (346)
T ss_dssp ECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---CCEEEEECCCCTTEEEEEEEET
T ss_pred CCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-CCCEEEEEeeCCCCeEEEEEEEC
Confidence 65555554432 2221111 13579999999 43333333 2 65555554 35578899998 47899999999
Q ss_pred ccc
Q psy10837 310 SNY 312 (316)
Q Consensus 310 ~~Y 312 (316)
+.+
T Consensus 216 ~~v 218 (346)
T 2q7d_A 216 ESY 218 (346)
T ss_dssp TEE
T ss_pred CEE
Confidence 864
No 23
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=96.27 E-value=0.0037 Score=59.08 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=82.6
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
.++|+|+.--|-. .+||- .+--.|...|||.++ +..++..+. ||. .+.++.+++| +|..+....
T Consensus 116 ~~~D~vf~~lhG~-~gEdg-~iq~lle~~gipy~G~~~~a~~~~~------DK~----~~k~~l~~~G---Ip~p~~~~~ 180 (386)
T 3e5n_A 116 AQIDVVFPIVHGT-LGEDG-SLQGLLRMANLPFVGSGVLGSAVAM------DKD----MAKRVLRDAR---LAVAPFVCF 180 (386)
T ss_dssp CCCSEEEEEECSH-HHHSS-HHHHHHHHTTCCBSSCCHHHHHHHH------BHH----HHHHHHHHTT---CCBCCEEEE
T ss_pred CCCCEEEEcCCCC-CCcCH-HHHHHHHHcCCCccCCCHHHHHHHh------CHH----HHHHHHHHCC---CCCCCEEEE
Confidence 5799999886653 23442 233445678999875 678888888 988 5555666888 887766555
Q ss_pred CCCc----ccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeeccccc
Q psy10837 249 PNFK----EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 249 pn~~----~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
.+.. +.......-.||+|||+=...+|.|- |+...+..+ +.-+-.|+||+- .++.|.-+|+.
T Consensus 181 ~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~ 256 (386)
T 3e5n_A 181 DRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAG-REIECAVLGNA 256 (386)
T ss_dssp EHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEECSS
T ss_pred eCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCCC-eEEEEEEEeCC
Confidence 4433 11000123479999999888888776 444444322 356889999996 67777666653
No 24
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0028 Score=59.02 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=78.6
Q ss_pred eeeeccEEEEeccccccCCCch--hhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHK--NLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~r--niliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|.|+.. .|+.. .+..-+...|+|.+ |+.+++..+. ||-+ +.++.+++| +|..+
T Consensus 58 ~~~~~d~v~~~------~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~ 118 (417)
T 2ip4_A 58 LAEGIDLTLVG------PEAPLVEGIADAFQARGLLLFGPTQKAAMIEG------SKAF----AKGLMERYG---IPTAR 118 (417)
T ss_dssp HHHTCCEEEEC------SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHH------CHHH----HHHHHHHTC---CCBCC
T ss_pred HHcCCCEEEEC------CchHHHHHHHHHHHHCCCCEECccHHHHHHHc------CHHH----HHHHHHHcC---CCCCC
Confidence 44678988874 23332 34444567899988 8999999999 9984 344556788 88776
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc--c---eeeeecccccccceeeeeccc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA--N---TYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~--~---tY~TtEPfId~kYDIriQKIG 309 (316)
...+-+..+...-...-.||+|||+=...+|.|= |+...+.-. + .-+-.|+||+ ..+++|.-+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~-g~E~sv~~~~ 194 (417)
T 2ip4_A 119 YRVFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE-GEEATVLALT 194 (417)
T ss_dssp EEEESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC-SCEEEEEEEE
T ss_pred eeeeCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc-CcEEEEEEEE
Confidence 6555554443111223469999999666666664 444443211 1 4578999999 4577666553
No 25
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=95.99 E-value=0.0055 Score=57.96 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=80.3
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
|..++|.|+..-+... |+ ..+...+.-.|+|.+ |+.+++..+. ||-+ +.++.+++| +|..+..
T Consensus 76 ~~~~id~v~~~~g~~~--E~-~~~~~~~~~~gi~~~g~~~~~~~~~~------dK~~----~k~~l~~~G---ip~p~~~ 139 (461)
T 2dzd_A 76 KAHDVDAIHPGYGFLS--EN-IQFAKRCREEGIIFIGPNENHLDMFG------DKVK----ARHAAVNAG---IPVIPGS 139 (461)
T ss_dssp HHTTCCEEECCSSSST--TC-HHHHHHHHHTTCEESSCCHHHHHHTT------SHHH----HHHHHHHTT---CCBCCBC
T ss_pred HHhCCCEEEECCCccc--cC-HHHHHHHHHcCCEEECCCHHHHHHhh------CHHH----HHHHHHHcC---CCCCCCc
Confidence 4467888876543221 22 234555667799965 7899999999 9984 344556788 8876654
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKI 308 (316)
.+-+..+.......-.||+|||+=...+|.|= |+...+.- .+.-+-.|.||+-..++.++-+
T Consensus 140 ~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 219 (461)
T 2dzd_A 140 DGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQIL 219 (461)
T ss_dssp SSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEE
T ss_pred ccCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEE
Confidence 23444443111223479999999777677664 44444321 1345788999997667777766
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 220 ~~ 221 (461)
T 2dzd_A 220 GD 221 (461)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 26
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=95.93 E-value=0.0034 Score=58.48 Aligned_cols=121 Identities=14% Similarity=0.218 Sum_probs=77.5
Q ss_pred eeeeccEEEEeccccccCCCc--hhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDH--KNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~--rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|.|+.. .|+. -.+..-+.-.|+|.+ |+.+++..+. ||-+. .++.+++| +|..+
T Consensus 59 ~~~~~d~v~~~------~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~ 119 (422)
T 2xcl_A 59 KQNQVGLTIVG------PEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEG------SKQFA----KDLMKKYD---IPTAE 119 (422)
T ss_dssp HHTTEEEEEEC------SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHH------CHHHH----HHHHHHTT---CCBCC
T ss_pred HHcCCCEEEEC------CcHHHHHHHHHHHHHCCCCEECcCHHHHHHhc------CHHHH----HHHHHHcC---CCCCC
Confidence 44578888862 2333 133444567899988 8999999999 99843 44556788 88776
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
...+-+..+...-+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|+||+ ..++.|.-+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~ 198 (422)
T 2xcl_A 120 YETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS-GEEFSLMAF 198 (422)
T ss_dssp EEEESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEE
T ss_pred eEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc-CcEEEEEEE
Confidence 6656565543211223469999999777676664 444433111 25678999999 456666555
No 27
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.84 E-value=0.0065 Score=57.19 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=78.8
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+.. .|+ ..+...+.-.|+|.+ |+.+++..+. ||-+ +.++.+++| +|..+..
T Consensus 70 ~~~~~d~v~~~~g~~--~e~-~~~~~~~~~~gi~~~g~~~~~~~~~~------dK~~----~k~~l~~~g---ip~p~~~ 133 (451)
T 1ulz_A 70 LEVGADAIHPGYGFL--AEN-AEFAKMCEEAGITFIGPHWKVIELMG------DKAR----SKEVMKKAG---VPVVPGS 133 (451)
T ss_dssp HHTTCCEEECCSSTT--TTC-HHHHHHHHHTTCEESSSCHHHHHHHH------SHHH----HHHHHHHTT---CCBCCBC
T ss_pred HHcCCCEEEECCCcc--ccC-HHHHHHHHHCCCeEECcCHHHHHHhc------CHHH----HHHHHHHcC---CCCCCCc
Confidence 345688877653321 122 123445567899976 7899999999 9974 344455788 7766544
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
.+.+..+...-+..-.||+|||+=...+|.|= |+...+... +.-+-.|.||+-..++.++-+
T Consensus 134 ~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 213 (451)
T 1ulz_A 134 DGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVL 213 (451)
T ss_dssp SSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEE
Confidence 34444443111223479999999777676664 444433211 346889999997667777766
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 214 ~~ 215 (451)
T 1ulz_A 214 GD 215 (451)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 28
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=95.82 E-value=0.0037 Score=62.29 Aligned_cols=128 Identities=10% Similarity=0.113 Sum_probs=78.1
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.--+.-.++.++.. .+.-.|+|.+ ++.+++..+. ||- ...++.+++| +|..+..
T Consensus 120 ~~~~~daI~pg~gflsE~~~~a~---~le~~Gi~~iGp~~~ai~~~~------DK~----~~k~ll~~~G---VPvp~~~ 183 (540)
T 3glk_A 120 KRIPVQAVWAGWGHASENPKLPE---LLCKNGVAFLGPPSEAMWALG------DKI----ASTVVAQTLQ---VPTLPWS 183 (540)
T ss_dssp HHTTCSEEECCSSGGGGCTHHHH---HHHHTTCEESSCCHHHHC---------CHH----HHHHHHHHTT---CCBCCBT
T ss_pred HHhCCCEEEeCCCccccCHHHHH---HHHHcCCceeCCCHHHHHHhC------CHH----HHHHHHHHcC---CCCCCcc
Confidence 45677877654333334444433 3556899998 8999999999 997 4555566888 8877743
Q ss_pred e-----------------------------cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---
Q psy10837 247 Y-----------------------------YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA--- 287 (316)
Q Consensus 247 ~-----------------------------ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~--- 287 (316)
. .-+..+.......-.||+|||+=.+.+|.|= |+...+...
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~ 263 (540)
T 3glk_A 184 GSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE 263 (540)
T ss_dssp TTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhh
Confidence 3 1122222111123469999999666666553 666555433
Q ss_pred --ceeeeecccccccceeeeeccccc
Q psy10837 288 --NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 288 --~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
+.-+-.|.||+-..++.||-+++.
T Consensus 264 ~~~~~vlVEe~I~g~rei~V~vl~d~ 289 (540)
T 3glk_A 264 IPGSPIFLMKLAQHARHLEVQILADQ 289 (540)
T ss_dssp STTCCEEEEECCSSEEEEEEEEEECT
T ss_pred ccCCCEEEEEecCCCcEEEEEEEEcC
Confidence 345889999998889999988875
No 29
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=95.76 E-value=0.0051 Score=62.28 Aligned_cols=129 Identities=11% Similarity=0.123 Sum_probs=84.0
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|..--+.-.++.++. ..+.-.|+|.+ ++.+++..+. ||- ...++.+++| +|..+..
T Consensus 136 ~~~~vdaV~pG~GflsEn~~~a---~~le~~Gi~~iGp~~~ai~~~~------DK~----~ak~ll~~aG---VPvpp~~ 199 (587)
T 3jrx_A 136 KRIPVQAVWAGWGHASENPKLP---ELLCKNGVAFLGPPSEAMWALG------DKI----ASTVVAQTLQ---VPTLPWS 199 (587)
T ss_dssp HHTTCSEEECCSSTTTTCTHHH---HHHHTTTCEESSCCHHHHHHHC------SHH----HHHHHHHHTT---CCBCCBT
T ss_pred HHhCCCEEEeCCCccccCHHHH---HHHHHCCCCeeCCCHHHHHHhC------CHH----HHHHHHHHcC---CCCCCee
Confidence 4467787765433323444443 45567899998 8999999999 997 4555666888 8887743
Q ss_pred e-----------------------------cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---
Q psy10837 247 Y-----------------------------YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA--- 287 (316)
Q Consensus 247 ~-----------------------------ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~--- 287 (316)
. ..+..+.......-.||+|||+=.+.+|.|= |+...+..+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~ 279 (587)
T 3jrx_A 200 GSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE 279 (587)
T ss_dssp TTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhh
Confidence 3 1121222111123469999999666666554 666555433
Q ss_pred --ceeeeecccccccceeeeecccccc
Q psy10837 288 --NTYCTTEPYIDSKFDVHVQKIGSNY 312 (316)
Q Consensus 288 --~tY~TtEPfId~kYDIriQKIG~~Y 312 (316)
+.-+-.|.||+-..+|.||-+++.+
T Consensus 280 ~~~~~vlVEeyI~g~rei~V~vl~D~~ 306 (587)
T 3jrx_A 280 IPGSPIFLMKLAQHARHLEVQILADQY 306 (587)
T ss_dssp STTCCEEEEECCCSCEEEEEEEEECSS
T ss_pred ccCCCEEEEEecCCCcEEEEEEEEcCC
Confidence 3458899999988899999888753
No 30
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.73 E-value=0.0049 Score=57.41 Aligned_cols=121 Identities=12% Similarity=0.188 Sum_probs=76.9
Q ss_pred eeeeccEEEEeccccccCCCch--hhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHK--NLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~r--niliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|.|+.. .|+.. .+..-+.-.|+|.+ |+.+++..+. ||-+. .++.+++| +|..+
T Consensus 59 ~~~~~d~v~~~------~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~ 119 (424)
T 2yw2_A 59 KNEGVDFTIVG------PEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEG------SKAFA----KTFMKKYG---IPTAR 119 (424)
T ss_dssp HHHTCSEEEEC------SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHH------CHHHH----HHHHHHTT---CCBCC
T ss_pred HHcCCCEEEEC------CchHHHHHHHHHHHHCCCcEECcCHHHHHHHh------CHHHH----HHHHHHcC---CCCCC
Confidence 44678998873 23321 23344567899988 8999999999 99844 34555788 88777
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
...+-+..+....+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|.||+ ..++.|.-+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~ 198 (424)
T 2yw2_A 120 YEVFTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE-GEEASYIVM 198 (424)
T ss_dssp EEEESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEE
T ss_pred eEEECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CcEEEEEEE
Confidence 6666565543211223479999999666666653 444443211 24678999999 345555444
No 31
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.73 E-value=0.011 Score=54.00 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=75.3
Q ss_pred eeeccEEEEeccccccCCCc-hhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHH-HHhCCCcccceeee
Q psy10837 169 SFKPDMILIRQNLRDAGEDH-KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQ-RKLGKENFPLIDIT 246 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~-rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~-k~lG~e~FPLI~Qt 246 (316)
..++|.|+.-- |+. -.++.-+.-.|++..|+.+++..+. ||-+.. ++. +++| +|..+..
T Consensus 72 ~~~~d~v~~~~------e~~~~~~~~~l~~~gi~~~~~~~~~~~~~------dK~~~~----~~l~~~~g---ip~p~~~ 132 (391)
T 1kjq_A 72 LEKPHYIVPEI------EAIATDMLIQLEEEGLNVVPCARATKLTM------NREGIR----RLAAEELQ---LPTSTYR 132 (391)
T ss_dssp HHCCSEEEECS------SCSCHHHHHHHHHTTCEESSCHHHHHHHH------SHHHHH----HHHHTTSC---CCBCCEE
T ss_pred HcCCCEEEECC------CcCCHHHHHHHHhCCCCcCCCHHHHHHhh------CHHHHH----HHHHHhCC---CCCCCee
Confidence 35789888732 221 2234446667888889999999999 998433 343 4777 8877766
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-------ceeeeecccccccceeeeecc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-------~tY~TtEPfId~kYDIriQKI 308 (316)
.+.+..+.......-.||+|||+=...+|.|- |+...+.-. ..-+-.|.||+...+++|.-+
T Consensus 133 ~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~ 208 (391)
T 1kjq_A 133 FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTV 208 (391)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEE
T ss_pred eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEE
Confidence 66555443211223469999999777777664 444444221 356889999996556665544
No 32
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=95.67 E-value=0.0066 Score=57.50 Aligned_cols=121 Identities=16% Similarity=0.259 Sum_probs=73.7
Q ss_pred eeeeccEEEEeccccccCCCch--hhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHK--NLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~r--niliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|.|+.. .|+.- .+..-+.-.|+|.+ ++.+++..+. ||-+. .++.+++| +|..+
T Consensus 80 ~~~~~d~vi~~------~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~ 140 (451)
T 2yrx_A 80 KQQAIDLTIVG------PEAPLASGIVDRFMAEGLRIFGPSQRAALIEG------SKAFA----KELMKKYG---IPTAD 140 (451)
T ss_dssp HHTTCSEEEEC------SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHH------CHHHH----HHHHHHTT---CCBCC
T ss_pred HHcCCCEEEEC------CchHHHHHHHHHHHHCCCCEeCccHHHHHHhh------CHHHH----HHHHHHcC---CCCCC
Confidence 44678988872 23321 33344567899988 7999999999 99844 34455788 88766
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
...+-+..+...-+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|+||+ ..++.|.-+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~ 219 (451)
T 2yrx_A 141 HAAFTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE-GEEFSFMAF 219 (451)
T ss_dssp EEEESCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC-SEEEEEEEE
T ss_pred eEEECCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc-CcEEEEEEE
Confidence 5555554443111223469999999776666664 444333111 25678999999 346655544
No 33
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=95.56 E-value=0.039 Score=50.95 Aligned_cols=130 Identities=24% Similarity=0.337 Sum_probs=81.2
Q ss_pred eeeeeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccce
Q psy10837 165 KVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLI 243 (316)
Q Consensus 165 kvvRsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI 243 (316)
...+..++|+|+.=-|-. .+||= .+--.|...|||.+. +..++-.+. ||- ...++.++.| +|.-
T Consensus 91 ~~~~~~~~D~vf~~l~G~-~gEdg-~~q~~le~~gip~~G~~~~a~~~~~------DK~----~~k~~l~~~G---ip~p 155 (357)
T 4fu0_A 91 DKYRIIKVDLVFPVLHGK-NGEDG-TLQGIFELAGIPVVGCDTLSSALCM------DKD----RAHKLVSLAG---ISVP 155 (357)
T ss_dssp --CEEEECSEEEECCCSH-HHHSS-HHHHHHHHTTCCBSSCCHHHHHHHH------CHH----HHHHHHHHTT---CBCC
T ss_pred hhHhhcCCCEEEECCcCc-cccCH-HHHHHHHHCCCcEECcCHHHHHHHh------CHH----HHHHHHHHCC---CCCC
Confidence 344667899998775553 22331 233456788999885 788888888 997 4555666888 7876
Q ss_pred eeeecCCCccc--ccc-cCCCCCcEEEeeccccccCcc-------chhhhhhhc---ceeeeecccccccceeeeecccc
Q psy10837 244 DITYYPNFKEM--VSK-MTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 244 ~Qt~ypn~~~m--~~k-~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---~tY~TtEPfId~kYDIriQKIG~ 310 (316)
+...+....+- +.+ ...-.||+|||+-...+|.|= |+...+..+ +..+-.|.||+. .++.|+-+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~G-~e~~v~vl~~ 234 (357)
T 4fu0_A 156 KSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETING-FEVGCAVLGI 234 (357)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEES
T ss_pred CEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecCC-EEEEEEEEec
Confidence 65555443221 000 123579999999777777665 554444332 356788999974 3555555554
No 34
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=95.53 E-value=0.017 Score=53.98 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=74.5
Q ss_pred eeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHH-HHhCCCcccceeeee
Q psy10837 169 SFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQ-RKLGKENFPLIDITY 247 (316)
Q Consensus 169 sfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~-k~lG~e~FPLI~Qt~ 247 (316)
..++|.|+..-... . -.++.-+.-.|++..|+.+++..+. ||-+. .++. +++| +|..+...
T Consensus 80 ~~~~d~V~~~~e~~--~---~~~~~~l~~~gi~~~~~~~~~~~~~------dK~~~----k~~l~~~~g---ip~p~~~~ 141 (433)
T 2dwc_A 80 REKPDAIIPEIEAI--N---LDALFEFEKDGYFVVPNARATWIAM------HRERL----RETLVKEAK---VPTSRYMY 141 (433)
T ss_dssp HHCCSEEEECSSCS--C---HHHHHHHHHTTCCBSSCHHHHHHHH------CHHHH----HHHHHHTSC---CCCCCEEE
T ss_pred HcCCCEEEECcccC--C---HHHHHHHHhcCCeeCCCHHHHHHhh------CHHHH----HHHHHHhcC---CCCCCeeE
Confidence 35789888754211 1 1234446667888889999999999 99843 3443 5778 88777666
Q ss_pred cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-------ceeeeecccccccceeeeeccc
Q psy10837 248 YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-------NTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 248 ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-------~tY~TtEPfId~kYDIriQKIG 309 (316)
+.+..+...-...-.||+|||+=...+|.|- |+...+.-. ...+-.|.||+...+++|.-+.
T Consensus 142 ~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~ 217 (433)
T 2dwc_A 142 ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVR 217 (433)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEE
T ss_pred eCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEe
Confidence 6665443111223469999999776676664 444444221 3457889999965666665553
No 35
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=95.52 E-value=0.033 Score=52.82 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=75.5
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+.--|-. .+||- .+---|...|||.++ +..++..+. ||. .+.++.+++|+ +|..+.....
T Consensus 119 ~~D~vf~~lhG~-~GEdg-~iq~lle~~gipy~G~~~~a~~~~~------DK~----~~k~~l~~~G~--Ipvp~~~~~~ 184 (383)
T 3k3p_A 119 EEAVVFPVLHGP-MGEDG-SIQGFLEVLKMPYVGTNILSSSVAM------DKI----TTNQVLESATT--IPQVAYVALI 184 (383)
T ss_dssp TTCEEEEECCST-TTSSS-HHHHHHHHTTCCBSSCCHHHHHHHH------CHH----HHHHHHHHHCC--CCBCCEEEEE
T ss_pred CCCEEEEcCCCC-CcchH-HHHHHHHHcCCCccCCCHHHHHHHh------CHH----HHHHHHHhCCC--cCCCCEEEEe
Confidence 799999988875 34552 444556788999885 688888888 987 44445557773 5555555555
Q ss_pred CCc----ccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---cceeeeecccccccceeeeecccc
Q psy10837 250 NFK----EMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 250 n~~----~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
+.. +.......-.||+|||+=...+|.|= |+...+.. .+.-+-.|+||+- .++.|.-+|+
T Consensus 185 ~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~G-~E~~v~vl~d 258 (383)
T 3k3p_A 185 EGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDA-REIEVGILGN 258 (383)
T ss_dssp TTSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEES
T ss_pred CccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-eEEEEEEEeC
Confidence 432 11000223579999999777777665 44443322 2356789999993 4666655554
No 36
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=95.46 E-value=0.009 Score=56.47 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=77.0
Q ss_pred eeeeccEEEEeccccccCCCc--hhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDH--KNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~--rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|+|+.. .|+. -.++.-+.-.|+|.+ |+.+++..+. ||-+. .++.+++| +|..+
T Consensus 85 ~~~~~d~V~~~------~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~------dK~~~----k~~l~~~g---ip~p~ 145 (452)
T 2qk4_A 85 KEKKIEFVVVG------PEAPLAAGIVGNLRSAGVQCFGPTAEAAQLES------SKRFA----KEFMDRHG---IPTAQ 145 (452)
T ss_dssp HHHTCCEEEEC------SSHHHHTTHHHHHHHTTCCEESCCTTTTHHHH------BHHHH----HHHHHHTT---CCBCC
T ss_pred HHcCCCEEEEC------CcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhc------CHHHH----HHHHHHCC---CCCCC
Confidence 44678988862 3442 133444566799998 8999999999 99843 44556788 88777
Q ss_pred eeecCCCcccccccCCCCCc-EEEeeccccccCcc-------chhhhhh-hc--------ceeeeecccccccceeeeec
Q psy10837 245 ITYYPNFKEMVSKMTAPKYP-VVFKIGHAHSGFGK-------DMAGVVA-VA--------NTYCTTEPYIDSKFDVHVQK 307 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fP-vVVKvGhaH~G~GK-------Diasvva-~~--------~tY~TtEPfId~kYDIriQK 307 (316)
...+.+..+....+..-.|| +|||+=...+|.|= |+...+. +. ..-+-.|+||+ ..++.|.-
T Consensus 146 ~~~~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~ 224 (452)
T 2qk4_A 146 WKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD-GEEVSCLC 224 (452)
T ss_dssp EEEESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC-SEEEEEEE
T ss_pred eEEECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CCeEEEEE
Confidence 66666655442112235799 99999655566553 4444432 11 24578999999 45777766
Q ss_pred cc
Q psy10837 308 IG 309 (316)
Q Consensus 308 IG 309 (316)
+.
T Consensus 225 ~~ 226 (452)
T 2qk4_A 225 FT 226 (452)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 37
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=95.24 E-value=0.023 Score=52.27 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=70.7
Q ss_pred eeeeccEEEEeccccccCCCc--hhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDH--KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDI 245 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~--rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Q 245 (316)
+..++|.|+.. ++|. ..+.......|+| .|+.+++..+. ||-+ +.++.+++| +|..+.
T Consensus 68 ~~~~~d~v~~~------~~~~~~~~~a~~~~~~gl~-g~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~~ 127 (403)
T 4dim_A 68 KDLNLDGAATC------CLDTGIVSLARICDKENLV-GLNEEAAIMCG------DKYK----MKEAFKKYN---VNTARH 127 (403)
T ss_dssp TTSCCSEEECC------SCSTTHHHHHHHHHHHTCS-SCCHHHHHHHH------CHHH----HHHHHHHHT---CCCCCE
T ss_pred HHcCCCEEEeC------CcchhHHHHHHHHHHcCcC-CCCHHHHHHHh------CHHH----HHHHHHHcC---CCCCCE
Confidence 45678888743 1221 1223334556786 68999999999 9983 344555788 887777
Q ss_pred eecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-----ceeeeecccccc-cceee
Q psy10837 246 TYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-----NTYCTTEPYIDS-KFDVH 304 (316)
Q Consensus 246 t~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-----~tY~TtEPfId~-kYDIr 304 (316)
....+..+.......-.||+|||+=...+|.|= |+...+... +.-+-.|.||+- .|++.
T Consensus 128 ~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~ 199 (403)
T 4dim_A 128 FVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQ 199 (403)
T ss_dssp ECCCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEE
T ss_pred EEeCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEE
Confidence 666665554222335579999999777777665 444444322 245788999994 44444
No 38
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=95.24 E-value=0.027 Score=52.98 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=79.2
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+.. .|+ ..+...+.-.|+|.+ ++.+++..+. ||-+ +.++.+++| +|..+..
T Consensus 71 ~~~~~d~v~~~~g~~--~e~-~~~~~~~e~~gi~~~g~~~~~~~~~~------dK~~----~k~~l~~~g---ip~p~~~ 134 (449)
T 2w70_A 71 EITGAVAIHPGYGFL--SEN-ANFAEQVERSGFIFIGPKAETIRLMG------DKVS----AIAAMKKAG---VPCVPGS 134 (449)
T ss_dssp HHHTCCEEECCSSTT--TTC-HHHHHHHHHTTCEESSSCHHHHHHHH------SHHH----HHHHHHHHT---CCBCSBC
T ss_pred HHcCCCEEEECCCCc--ccC-HHHHHHHHHcCCceECCCHHHHHHhc------CHHH----HHHHHHHcC---CCcCCCc
Confidence 345788887653321 222 123445567899965 5899999999 9984 444556788 7876654
Q ss_pred --ecCCCccc-ccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeec
Q psy10837 247 --YYPNFKEM-VSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQK 307 (316)
Q Consensus 247 --~ypn~~~m-~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQK 307 (316)
.+-+..+. ..-...-.||+|||+=...+|.|= |+...+... +.-+-.|+||+-..+++|+-
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~ 214 (449)
T 2w70_A 135 DGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQV 214 (449)
T ss_dssp SSCCCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEE
Confidence 34444333 111223469999999776676664 444333211 35688999999766777776
Q ss_pred ccc
Q psy10837 308 IGS 310 (316)
Q Consensus 308 IG~ 310 (316)
+++
T Consensus 215 ~~~ 217 (449)
T 2w70_A 215 LAD 217 (449)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 39
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=95.19 E-value=0.012 Score=56.38 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=79.6
Q ss_pred eeeeccEEEEeccccccCCCc--hhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDH--KNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~--rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|+|++- .|+. ..+..-|.-.|+|.+ ++.+++..+. ||-+. .++.+++| +|.-+
T Consensus 80 ~~~~id~vv~g------~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~------dK~~~----k~~l~~~G---Ip~p~ 140 (442)
T 3lp8_A 80 KKEKIELVVIG------PETPLMNGLSDALTEEGILVFGPSKAAARLES------SKGFT----KELCMRYG---IPTAK 140 (442)
T ss_dssp HHTTCCEEEEC------SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHH------CHHHH----HHHHHHHT---CCBCC
T ss_pred HHhCCCEEEEC------CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhh------CHHHH----HHHHHHCC---CCCCC
Confidence 55689999872 2332 234556777899998 8999999999 99843 34446788 88766
Q ss_pred eeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 245 Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
...+.+..+....+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|.||+ -.++.|.-+
T Consensus 141 ~~~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~ 219 (442)
T 3lp8_A 141 YGYFVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE-GKEISFFTL 219 (442)
T ss_dssp EEEESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec-CcEEEEEEE
Confidence 6566665544222334579999999766666664 333333211 24678899998 456666655
Q ss_pred c
Q psy10837 309 G 309 (316)
Q Consensus 309 G 309 (316)
.
T Consensus 220 ~ 220 (442)
T 3lp8_A 220 V 220 (442)
T ss_dssp E
T ss_pred E
Confidence 3
No 40
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=95.18 E-value=0.033 Score=49.28 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=55.8
Q ss_pred hhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecccc
Q psy10837 194 GFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAH 273 (316)
Q Consensus 194 Gl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH 273 (316)
.|...|+|.+|+.+++..+. ||-+ +.++.++.| +|..+. +-+..++ .||+|||+=...
T Consensus 80 ~le~~g~~~~~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~~--~~~~~~l-------~~P~vvKP~~g~ 137 (334)
T 2r85_A 80 LVENMKVPYFGNKRVLRWES------DRNL----ERKWLKKAG---IRVPEV--YEDPDDI-------EKPVIVKPHGAK 137 (334)
T ss_dssp HHHTCCSCBBSCTTHHHHHH------SHHH----HHHHHHHTT---CCCCCB--CSCGGGC-------CSCEEEEECC--
T ss_pred HHHHcCCCccCCHHHHHHHH------hHHH----HHHHHHHcC---CCCCCc--cCChHHc-------CCCEEEEeCCCC
Confidence 44678999999988998888 9963 335556788 776543 4343333 499999998887
Q ss_pred ccCcc-------chhhhhhhc--------ceeeeecccccc-cce
Q psy10837 274 SGFGK-------DMAGVVAVA--------NTYCTTEPYIDS-KFD 302 (316)
Q Consensus 274 ~G~GK-------Diasvva~~--------~tY~TtEPfId~-kYD 302 (316)
+|.|= |+...+.-. ..-+-.|+||+- .|+
T Consensus 138 ~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G~e~~ 182 (334)
T 2r85_A 138 GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVY 182 (334)
T ss_dssp --TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCCEEEE
T ss_pred CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCCceeE
Confidence 87775 444443211 145778999984 555
No 41
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=95.15 E-value=0.015 Score=54.77 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=71.9
Q ss_pred hhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC--CCcccccccCCCCCcEEEee
Q psy10837 192 LLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP--NFKEMVSKMTAPKYPVVFKI 269 (316)
Q Consensus 192 liGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp--n~~~m~~k~~~~~fPvVVKv 269 (316)
+.-|.- |+|..++.+++..+. ||- .+.++.+++| +|..+..... +..+.......-.||+|||+
T Consensus 102 l~~l~~-g~~v~p~~~a~~~~~------dK~----~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp 167 (403)
T 3k5i_A 102 LEEVAS-EVKIEPSWQAIRTIQ------NKF----NQKEHLRKYG---IPMAEHRELVENTPAELAKVGEQLGYPLMLKS 167 (403)
T ss_dssp HHHHTT-TSEESSCHHHHHHHT------SHH----HHHHHHHTTT---CCBCCEEEESSCCHHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHc-CCccCcCHHHHHHhc------CHH----HHHHHHHHCC---cCCCCEEEEcCCCHHHHHHHHHHhCCCEEEEe
Confidence 344555 999999999999999 998 3445556888 8888877776 55444211223469999999
Q ss_pred cccc-ccCcc-------chhhhhh-hcceeeeecccccccceeeeecccc
Q psy10837 270 GHAH-SGFGK-------DMAGVVA-VANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 270 GhaH-~G~GK-------Diasvva-~~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
=... +|.|- |+...+. +...-+-.|.||+..+++.|.-+++
T Consensus 168 ~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~~~E~sv~v~~~ 217 (403)
T 3k5i_A 168 KTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYFKMELAVIVVKT 217 (403)
T ss_dssp SSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCEEEEEEEEEEEC
T ss_pred CCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCCCeEEEEEEEEc
Confidence 5443 56554 5555442 2245678999999778888877665
No 42
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.85 E-value=0.07 Score=48.69 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=73.1
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn 250 (316)
++|.|+..-... . -.++.-+.-.| ...|+.+++..+. ||- .+.++.+++| +|..+...+.+
T Consensus 59 ~~d~v~~~~e~~----~-~~~~~~l~~~g-~~g~~~~~~~~~~------dK~----~~k~~l~~~g---ip~p~~~~~~~ 119 (369)
T 3aw8_A 59 GLALVTYEFENV----P-VEAARRLEGRL-PLYPPAKALEVAQ------DRL----REKTFFQGLG---VPTPPFHPVDG 119 (369)
T ss_dssp TCSEEEECCTTC----C-HHHHHHHHHHS-CBSSCHHHHHHHT------CHH----HHHHHHHHHT---CCCCCEEEESS
T ss_pred CCCEEEECCCCc----C-HHHHHHHHHcC-CcCCCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCceeeCC
Confidence 578777644321 1 12223334445 6789999999999 998 3445556788 88776665555
Q ss_pred CcccccccCCCCCcEEEeecccc-ccCcc-------chhhhhhh-cceeeeecccccccceeeeecccc
Q psy10837 251 FKEMVSKMTAPKYPVVFKIGHAH-SGFGK-------DMAGVVAV-ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 251 ~~~m~~k~~~~~fPvVVKvGhaH-~G~GK-------Diasvva~-~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+...-...-.||+|||+-... +|.|= |+...+.. ...-+-.|.||+.-.++.++-+++
T Consensus 120 ~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~~g~e~sv~~~~d 188 (369)
T 3aw8_A 120 PEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVPFDREVSLLAVRG 188 (369)
T ss_dssp HHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTCSSSEEEEECCCCSEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCCCCEEEEEEEEEC
Confidence 55442213345799999997776 66664 33333321 135678899999666788777764
No 43
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=94.81 E-value=0.013 Score=55.91 Aligned_cols=125 Identities=11% Similarity=0.156 Sum_probs=81.0
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|+|++-.. .+-...+..-|.-.|+|.+ ++.+++..+. ||-+ +.++.+++| +|.-+..
T Consensus 64 ~~~~id~vv~g~e----~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~------dK~~----~k~~l~~~G---Iptp~~~ 126 (431)
T 3mjf_A 64 QSHDIGLTIVGPE----APLVIGVVDAFRAAGLAIFGPTQAAAQLEG------SKAF----TKDFLARHN---IPSAEYQ 126 (431)
T ss_dssp HHTTEEEEEECSH----HHHHTTHHHHHHHTTCCEESCCHHHHHHHH------CHHH----HHHHHHHTT---CSBCCEE
T ss_pred HHhCcCEEEECCc----hHHHHHHHHHHHhcCCCeeCCCHHHHHHhh------CHHH----HHHHHHHcC---CCCCCeE
Confidence 4467888887311 1112345566777899998 8999999999 9974 444556788 8876666
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKIG~ 310 (316)
.+.+..+....+..-.||+|||+=...+|.|= |+...+.-. ..-+-.|.||+ -.++.|.-+.+
T Consensus 127 ~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~d 205 (431)
T 3mjf_A 127 NFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD-GEEASFIVMVD 205 (431)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC-SEEEEEEEEEE
T ss_pred eeCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC-CcEEEEEEEEc
Confidence 66665554222233479999999766666664 333333111 23578899999 46777776644
No 44
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=94.70 E-value=0.039 Score=59.93 Aligned_cols=128 Identities=22% Similarity=0.239 Sum_probs=80.2
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+.-.++. .+...+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+..
T Consensus 74 ~~~~~DaI~pg~gflsE~~---~~a~~le~~Gi~~iGp~~eai~~~~------DK~----~~r~ll~~aG---IPvpp~~ 137 (1150)
T 3hbl_A 74 KQANVDAIHPGYGFLSENE---QFARRCAEEGIKFIGPHLEHLDMFG------DKV----KARTTAIKAD---LPVIPGT 137 (1150)
T ss_dssp HHTTCSEEECTTTTSTTCH---HHHHHHHHTTCEESSSCHHHHHHHH------SHH----HHHHHHHHTT---CCBCCBC
T ss_pred HHhCCCEEEECCCcccccH---HHHHHHHHCCCCeeCCCHHHHHHhC------CHH----HHHHHHHHcC---cCCCCcc
Confidence 4456787776533322332 34455667899988 8999999999 998 4444556788 8887766
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
...+..+.......-.||+|||+=.+.+|.|= |+...+..+ +.-+-.|.||+-...+.||-+
T Consensus 138 ~~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl 217 (1150)
T 3hbl_A 138 DGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVI 217 (1150)
T ss_dssp SSCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEE
Confidence 34444444222345679999999666666554 555555332 345779999998778888887
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 218 ~d~ 220 (1150)
T 3hbl_A 218 GDE 220 (1150)
T ss_dssp ECS
T ss_pred EeC
Confidence 764
No 45
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=94.56 E-value=0.022 Score=60.85 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=75.1
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..+||.|++--+.. ..-++...|.-.|+|.+ |+.+++-.+. ||-. +.++.+++| +|.-+..
T Consensus 631 ~~e~~d~Vi~~~g~~----~~~~la~~Le~~Gi~i~G~~~~ai~~~~------DK~~----~~~ll~~~G---Ip~P~~~ 693 (1073)
T 1a9x_A 631 RIEKPKGVIVQYGGQ----TPLKLARALEAAGVPVIGTSPDAIDRAE------DRER----FQHAVERLK---LKQPANA 693 (1073)
T ss_dssp HHHCCSEEECSSSTH----HHHTTHHHHHHTTCCBCSSCHHHHHHHH------SHHH----HHHHHHHHT---CCCCCEE
T ss_pred hhcCcceEEeecCCc----hHHHHHHHHHHCCCCeeCCCHHHHHHhh------CHHH----HHHHHHHcC---cCCCCce
Confidence 345788887643221 11245556677899988 7899999999 9973 344556889 8866666
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-----ceeeeecccccccceeeeeccccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-----NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-----~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
..-+..+...-...-.||+|||+-...+|.|= |+...+.-+ ..-+-.|.||+-.+++.|+-+++.
T Consensus 694 ~~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~ 770 (1073)
T 1a9x_A 694 TVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDG 770 (1073)
T ss_dssp ECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECS
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEEC
Confidence 55555443111223469999999877777664 444444222 245788999998777777766543
No 46
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=94.45 E-value=0.082 Score=49.14 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=66.7
Q ss_pred CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecccc-ccC
Q psy10837 198 GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAH-SGF 276 (316)
Q Consensus 198 ~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH-~G~ 276 (316)
++++ ++.+++..+. ||- .+.++.+++| +|.-+.....+..+...-...-.||+|||+=... +|.
T Consensus 96 ~~v~--p~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~ 160 (377)
T 3orq_A 96 YNIP--QGYQAIQLLQ------DRL----TEKETLKSAG---TKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGK 160 (377)
T ss_dssp SCCT--TTTHHHHHHH------SHH----HHHHHHHHTT---CCBCCEEEECSSTHHHHHHHHTCSSEEEEESSSCCTTT
T ss_pred cCCC--CCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 4555 7889999999 998 3444456888 8888877777766552223345799999996654 455
Q ss_pred cc-------chhhhhhh-cceeeeecccccccceeeeecc
Q psy10837 277 GK-------DMAGVVAV-ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 277 GK-------Diasvva~-~~tY~TtEPfId~kYDIriQKI 308 (316)
|= |+...+.. .+.-+-.|.||+-.+++.|.-+
T Consensus 161 Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~g~~E~sv~~~ 200 (377)
T 3orq_A 161 GQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVT 200 (377)
T ss_dssp TEEEECSTTSHHHHHHHHTTSCEEEEECCCEEEEEEEEEE
T ss_pred CeEEECCHHHHHHHHHhcCCCcEEEEccCCCCEEEEEEEE
Confidence 54 55554422 2356788999998788888777
No 47
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=94.34 E-value=0.026 Score=57.63 Aligned_cols=128 Identities=15% Similarity=0.186 Sum_probs=79.8
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+...+|.|+-.-+.-.++. .+...+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+..
T Consensus 97 ~~~~~daI~pg~gflsE~~---~~a~~le~~Gi~~iGp~~~ai~~~~------DK~----~~k~~l~~~G---Vpvpp~~ 160 (675)
T 3u9t_A 97 LASGAQAIHPGYGFLSENA---DFARACEEAGLLFLGPPAAAIDAMG------SKS----AAKALMEEAG---VPLVPGY 160 (675)
T ss_dssp HHTTCSEEECCSSTTTTCH---HHHHHHHTTTCEESSCCHHHHHHHT------SHH----HHHHHHHHTT---CCBCCCC
T ss_pred HHhCcCEEEeCCcccccCH---HHHHHHHHcCCceeCCCHHHHHHhc------hHH----HHHHHHHHcC---cCcCCcc
Confidence 3456787764333222332 34556667899988 7999999999 997 4455556888 8887754
Q ss_pred e--cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 Y--YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 ~--ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
. ..+..+.......-.||+|||+=.+.+|.|= |+...+... +.-+-.|.||+-..+|.||-+
T Consensus 161 ~~~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~ 240 (675)
T 3u9t_A 161 HGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVF 240 (675)
T ss_dssp CSCCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEE
T ss_pred ccCCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEE
Confidence 4 3344444222334579999999666565554 555555322 345788999998888888888
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 241 ~d~ 243 (675)
T 3u9t_A 241 ADR 243 (675)
T ss_dssp ECS
T ss_pred EcC
Confidence 753
No 48
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=94.24 E-value=0.094 Score=47.66 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=66.4
Q ss_pred eccEEEEeccccccCCC--chhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec
Q psy10837 171 KPDMILIRQNLRDAGED--HKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D--~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y 248 (316)
+.|++++. + .++| ...++.-+.-.|....|+.+++..+. ||- .+.++.++ | +|.-+. +.
T Consensus 69 ~~D~~~~i--~--~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~------dK~----~~~~~l~~-G---ip~p~~-~~ 129 (305)
T 3df7_A 69 KSDAFLII--A--PEDDFLLYTLTKKAEKYCENLGSSSRAIAVTS------DKW----ELYKKLRG-E---VQVPQT-SL 129 (305)
T ss_dssp TCSEEEEE--C--CCGGGHHHHHHHHHHTTSEESSCCHHHHHHHT------SHH----HHHHHHTT-T---SCCCCE-ES
T ss_pred hcCEEEEE--c--cCCcHHHHHHHHHHHhcCCccCCCHHHHHHhc------CHH----HHHHHHHh-C---CCCCCE-ec
Confidence 45777766 2 3344 33455556666677899999999999 998 44444556 7 664332 22
Q ss_pred CCCcccccccCCCCCcEEEeeccccccCcc-chhhhhhhcceeeeecccccccceeeeeccc
Q psy10837 249 PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-DMAGVVAVANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 249 pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-Diasvva~~~tY~TtEPfId~kYDIriQKIG 309 (316)
....||+|||+=.+.+|.|= =+.+ ....+-.|.||+ -.+++|.-++
T Consensus 130 ----------~~~~~P~vvKP~~g~gs~Gv~~v~~----~~~~~lvEe~I~-G~e~sv~v~~ 176 (305)
T 3df7_A 130 ----------RPLDCKFIIKPRTACAGEGIGFSDE----VPDGHIAQEFIE-GINLSVSLAV 176 (305)
T ss_dssp ----------SCCSSSEEEEESSCC----CBCCSS----CCTTEEEEECCC-SEEEEEEEEE
T ss_pred ----------ccCCCCEEEEeCCCCCCCCEEEEec----CCCCEEEEeccC-CcEEEEEEEe
Confidence 23479999999887777764 1111 445678899999 4677777665
No 49
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=94.17 E-value=0.042 Score=56.23 Aligned_cols=127 Identities=10% Similarity=0.110 Sum_probs=52.3
Q ss_pred eeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee--
Q psy10837 170 FKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT-- 246 (316)
Q Consensus 170 fkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt-- 246 (316)
..+|.|+..-+.-.++. .+...+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+-.
T Consensus 73 ~~~daI~pg~gflsE~~---~~a~~le~~Gi~~iGp~~~ai~~~~------dK~----~~k~~l~~~G---VPvpp~~~~ 136 (681)
T 3n6r_A 73 TGAQAVHPGYGFLSENS---KFAEALEAEGVIFVGPPKGAIEAMG------DKI----TSKKIAQEAN---VSTVPGYMG 136 (681)
T ss_dssp TCCSCCBCCSSSSTTCH---HHHHHHHTTTCCCSSSCHHHHHHTT------SHH----HHHHHHHTTT---CCCCCC---
T ss_pred hCcCEEEECCCccccCH---HHHHHHHHcCCceECCCHHHHHHhC------CHH----HHHHHHHHcC---cCcCCcccc
Confidence 45665554322222232 34455667799998 7999999999 998 4455556788 8887753
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKIG~ 310 (316)
...+..+.......-.||+|||+=.+.+|.|= |+...+..+ +.-+-.|.||+-..+|.||-+++
T Consensus 137 ~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d 216 (681)
T 3n6r_A 137 LIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCD 216 (681)
T ss_dssp ------------------------------------------------------------------CCSCEEEEEEEECC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEe
Confidence 23344444322445679999999666555554 444444322 24578899999878899988876
Q ss_pred cc
Q psy10837 311 NY 312 (316)
Q Consensus 311 ~Y 312 (316)
.+
T Consensus 217 ~~ 218 (681)
T 3n6r_A 217 SH 218 (681)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 50
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=93.97 E-value=0.12 Score=46.88 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=56.4
Q ss_pred eccEEEEeccccccCCCch-hhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecC
Q psy10837 171 KPDMILIRQNLRDAGEDHK-NLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYP 249 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~r-niliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~yp 249 (316)
++|+|+... |+.. .++.-|. . ...|+.+++..+. ||-+ +.++.+++| +|..+.....
T Consensus 57 ~~d~v~~~~------e~~~~~~~~~l~--~-~~g~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~~~~~~ 114 (365)
T 2z04_A 57 SCDIITYEF------EHIKDEVLEKCE--S-KLIPNPQALYVKK------SRIR----EKLFLKKHG---FPVPEFLVIK 114 (365)
T ss_dssp HCSEEEESS------SCCCHHHHHHHT--T-TBSSCTHHHHHHT------CHHH----HHHHHHTTT---CCCCCEEEC-
T ss_pred cCCEEEECC------CCCcHHHHHHHh--h-hcCCCHHHHHHhh------CHHH----HHHHHHHcC---CCCCCEEEEc
Confidence 578887653 2221 2333332 2 6778999999999 9984 344455778 7865544443
Q ss_pred CCcccccccCCCCCcEEEeecccc-ccCcc-------chhhhhh-h-cceeeeecccccccceeeeecccc
Q psy10837 250 NFKEMVSKMTAPKYPVVFKIGHAH-SGFGK-------DMAGVVA-V-ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 250 n~~~m~~k~~~~~fPvVVKvGhaH-~G~GK-------Diasvva-~-~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+...-...-.||+|||+=... +|.|= |+...+. + .+.-+-.|+||+.-.+++|+-+++
T Consensus 115 -~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~g~e~sv~~~~d 184 (365)
T 2z04_A 115 -RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVKFEAEISCIGVRD 184 (365)
T ss_dssp --------------CEEEECC------------------------------CEEEECCCCSEEEEEEEEEC
T ss_pred -HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCCCCEEEEEEEEEC
Confidence 33331112344699999997766 66664 4433331 1 235578899999656788877753
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=93.93 E-value=0.096 Score=50.92 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=73.9
Q ss_pred eeeeccEEEEeccccccCCCc-hhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDH-KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~-rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
|..++|.|+. ..|++ ..+...+...|+| .++.+++-.+. ||- .+.++.+++| +|..+..
T Consensus 99 ~~~~id~Vip------~sE~~l~~~a~~~e~~Gi~-g~~~~ai~~~~------DK~----~~k~~l~~~G---Ipvp~~~ 158 (474)
T 3vmm_A 99 EMFGADAITT------NNELFIAPMAKACERLGLR-GAGVQAAENAR------DKN----KMRDAFNKAG---VKSIKNK 158 (474)
T ss_dssp HHTTCSEEEE------SCGGGHHHHHHHHHHTTCC-CSCHHHHHHTT------CHH----HHHHHHHHTT---SCCCCEE
T ss_pred HHcCCCEEEE------CCcccHHHHHHHHHHcCCC-CCCHHHHHHhh------CHH----HHHHHHHHcC---CCCCCeE
Confidence 5567888877 12321 3455566778999 89999999999 997 4555556888 8888766
Q ss_pred ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------------ceeeeecccccc
Q psy10837 247 YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------------NTYCTTEPYIDS 299 (316)
Q Consensus 247 ~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------------~tY~TtEPfId~ 299 (316)
...+..+.......-.||+|||+=.+.+|.|= |+...+... ..-+-.|.||+-
T Consensus 159 ~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G 233 (474)
T 3vmm_A 159 RVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQG 233 (474)
T ss_dssp EECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCB
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCC
Confidence 66555444222334589999999655555543 544444221 356788999985
No 52
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=93.91 E-value=0.051 Score=50.30 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=69.0
Q ss_pred hhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecc
Q psy10837 192 LLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGH 271 (316)
Q Consensus 192 liGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGh 271 (316)
+..+.-.|+ ..++.+++..+. ||- .+.++.+++| +|..+.....+..+.......-.||+|||+-.
T Consensus 91 ~~~l~~~g~-~~~~~~~~~~~~------dK~----~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~ 156 (389)
T 3q2o_A 91 LQWLEKHAY-LPQGSQLLSKTQ------NRF----TEKNAIEKAG---LPVATYRLVQNQEQLTEAIAELSYPSVLKTTT 156 (389)
T ss_dssp HHHHHHHSC-CTTCSHHHHHTT------SHH----HHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHCSSEEEEESS
T ss_pred HHHHHhhCc-cCCCHHHHHHhc------CHH----HHHHHHHHCC---CCCCCeEEECCHHHHHHHHHhcCCCEEEEeCC
Confidence 334443444 558999999988 987 4444556888 88877777776555422122346999999966
Q ss_pred ccc-cCcc-------chhhhhhh-cceeeeecccccccceeeeecccc
Q psy10837 272 AHS-GFGK-------DMAGVVAV-ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 272 aH~-G~GK-------Diasvva~-~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+ |.|= |+...+.. .+.-+-.|.||+-.+++.|.-+++
T Consensus 157 ~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~g~~E~~v~~~~~ 204 (389)
T 3q2o_A 157 GGYDGKGQVVLRSEADVDEARKLANAAECILEKWVPFEKEVSVIVIRS 204 (389)
T ss_dssp CCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCCCSEEEEEEEEEC
T ss_pred CCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEecccCceEEEEEEEEc
Confidence 543 4443 55444422 245688999999878888887754
No 53
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=93.15 E-value=0.1 Score=48.82 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=72.4
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITY 247 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ 247 (316)
+..++|.|+.. . +....-.++. .-|....|+.+++..+. ||-+ +.++.+++| +|..+...
T Consensus 67 ~~~~~d~V~~~--~--E~~~~a~~~~---~l~~~~g~~~~~~~~~~------dK~~----~k~~l~~~g---ip~p~~~~ 126 (412)
T 1vkz_A 67 AIPEEDIVIPG--S--EEFLVEGVSN---WRSNVFGPVKEVARLEG------SKVY----AKRFMKKYG---IRTARFEV 126 (412)
T ss_dssp TSCSSCEECCS--S--GGGTCC--------CTTBSSCCHHHHHHHH------CHHH----HHHHHHHTT---CCCCCEEE
T ss_pred HHcCCCEEEEC--C--cHHHHHHHHH---HhhhhhCCCHHHHHHhc------CHHH----HHHHHHHcC---CCCCCEEE
Confidence 44678888872 1 1111111222 22335568999999999 9984 444556788 88766555
Q ss_pred cCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhh-hc-c-------eeeeecccccccceeeeeccc
Q psy10837 248 YPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVA-VA-N-------TYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 248 ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva-~~-~-------tY~TtEPfId~kYDIriQKIG 309 (316)
+.+..+...-+..-.||+|||+=...+|.|= |+...+. +. . .-+-.|.||+ -.++.|+-+.
T Consensus 127 ~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~-G~E~sv~~~~ 203 (412)
T 1vkz_A 127 AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA-GNELSAMAVV 203 (412)
T ss_dssp ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC-SEEEEEEEEE
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc-CcEEEEEEEE
Confidence 5555554222334579999999666666664 4444331 11 1 2678899999 5678877764
No 54
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=92.90 E-value=0.061 Score=58.41 Aligned_cols=128 Identities=22% Similarity=0.242 Sum_probs=54.1
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.--+..+++ ..+...+.-.|+|.+ ++.+++..+. ||-+ +.++.+++| +|..+..
T Consensus 90 ~~~~iD~V~pg~g~lsE~---~~~a~~le~~Gi~~iGp~~~ai~~~~------DK~~----~k~~l~~~G---IPvp~~~ 153 (1165)
T 2qf7_A 90 KLSGADAIHPGYGLLSES---PEFVDACNKAGIIFIGPKADTMRQLG------NKVA----ARNLAISVG---VPVVPAT 153 (1165)
T ss_dssp HHHTCSEEECCSSTTTTC---HHHHHHHHHTTCEESSCCHHHHHHHH------SHHH----HHHHHHHTT---CCBC---
T ss_pred HHhCCCEEEECCCchhcC---HHHHHHHHHcCCceECCCHHHHHHHC------CHHH----HHHHHHHcC---CCCCCee
Confidence 345678877654332222 234455677899986 6899999999 9984 445556888 8887765
Q ss_pred --ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc---------ceeeeecccccccceeeeecc
Q psy10837 247 --YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---------NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 247 --~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---------~tY~TtEPfId~kYDIriQKI 308 (316)
..-+..+.......-.||+|||+=...+|.|= |+...+... +.-+-.|.||+...++.||-+
T Consensus 154 ~~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl 233 (1165)
T 2qf7_A 154 EPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQIL 233 (1165)
T ss_dssp ------------------------------------------------------------------CCCSSEEEEEEEEE
T ss_pred CcCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEE
Confidence 34444444211334579999999665565553 444444221 234678999997678888877
Q ss_pred ccc
Q psy10837 309 GSN 311 (316)
Q Consensus 309 G~~ 311 (316)
++.
T Consensus 234 ~D~ 236 (1165)
T 2qf7_A 234 GDT 236 (1165)
T ss_dssp ECT
T ss_pred EcC
Confidence 754
No 55
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=92.86 E-value=0.29 Score=45.58 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc
Q psy10837 199 GIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK 278 (316)
Q Consensus 199 GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK 278 (316)
|+| -++.+++-.+. ||- .+.++.++.| +|.-+...+.+..+.. -..-.||+|||+=.+.+|.|=
T Consensus 98 glp-g~~~~~~~~~~------dK~----~~k~~l~~~g---ip~p~~~~~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv 161 (425)
T 3vot_A 98 NLP-GLPFTTMENCR------NKN----KTRSILQQNG---LNTPVFHEFHTLADLE--NRKLSYPLVVKPVNGFSSQGV 161 (425)
T ss_dssp TCS-SCCHHHHHHHH------CHH----HHHHHHHHTT---CCCCCEEEESSGGGGT--TCCCCSSEEEEESCC-----C
T ss_pred CCC-CCCHHHHHHhh------CHH----HHHHHHHHCC---CCCCceeccCcHHHHH--HhhcCCcEEEEECCCCCCCCc
Confidence 678 47889999999 997 4445556788 8866655566666652 234679999999666666664
Q ss_pred -------chhhhhhh--------------cceeeeecccccc-cceee
Q psy10837 279 -------DMAGVVAV--------------ANTYCTTEPYIDS-KFDVH 304 (316)
Q Consensus 279 -------Diasvva~--------------~~tY~TtEPfId~-kYDIr 304 (316)
|+...+.- .+..+-.|.||+- .|.+.
T Consensus 162 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~ 209 (425)
T 3vot_A 162 VRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIE 209 (425)
T ss_dssp EEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEE
T ss_pred eEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEE
Confidence 44443321 2345778999984 44443
No 56
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=92.47 E-value=0.084 Score=51.89 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=76.2
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCC--CCCCC-chhhHhhhccCcccCCchhHHHHHHHHHHHhCCCccccee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGG--IPSIN-TLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLID 244 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~G--IPsvN-SL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~ 244 (316)
+..++|.|+.--+...++..+.. .+.-.| +|.++ +.+++..+. ||-+. .++.+++| +|..+
T Consensus 127 ~~~~id~Vi~g~G~~sE~~~~~~---~l~~~g~~i~~~gp~~~a~~~~~------dK~~~----k~~l~~~G---Ip~p~ 190 (554)
T 1w96_A 127 ERADVDAVWAGWGHASENPLLPE---KLSQSKRKVIFIGPPGNAMRSLG------DKISS----TIVAQSAK---VPCIP 190 (554)
T ss_dssp HHTTCSEEECCSSTTTTCTHHHH---HHHHSTTCCEESSCCHHHHHHSC------SHHHH----HHHHHHTT---CCBCC
T ss_pred HHhCCCEEEECCCccccCHHHHH---HHHHcCCeEEEeCCCHHHHHHHh------CHHHH----HHHHHHCC---CCcCC
Confidence 44678988865333223322332 356677 87765 678888888 99843 34556888 77765
Q ss_pred eeec--------------------------CCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc----
Q psy10837 245 ITYY--------------------------PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA---- 287 (316)
Q Consensus 245 Qt~y--------------------------pn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~---- 287 (316)
.... -+..+.......-.||+|||+=...+|.|= |+...+...
T Consensus 191 ~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~ 270 (554)
T 1w96_A 191 WSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEI 270 (554)
T ss_dssp BTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhc
Confidence 3322 122222110112469999999766666663 444444221
Q ss_pred -ceeeeecccccccceeeeeccccc
Q psy10837 288 -NTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 288 -~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
..-+-.|.||+...++.|+-+++.
T Consensus 271 ~~~~vlvEe~i~g~~e~sv~vl~d~ 295 (554)
T 1w96_A 271 PGSPIFIMKLAGRARHLEVQLLADQ 295 (554)
T ss_dssp TTCCEEEEECCCSCEEEEEEEEECT
T ss_pred cCCCEEEEEecCCCcEEEEEEEEcC
Confidence 345788999986567777766654
No 57
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=92.21 E-value=0.21 Score=51.87 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCccccccc-CCCCCcEEEeeccccccC
Q psy10837 198 GGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKM-TAPKYPVVFKIGHAHSGF 276 (316)
Q Consensus 198 ~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~-~~~~fPvVVKvGhaH~G~ 276 (316)
|++...++..++-.+. ||- ...++.++.| +|.-+...+.+..+....+ ..-.||+|||+=.+.+|.
T Consensus 468 g~itg~~~~~a~~~~~------DK~----~tk~lL~~~G---IPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~ 534 (750)
T 3ln6_A 468 GNMTSKDNYIVPLAMA------NKV----VTKKILDEKH---FPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTNFGL 534 (750)
T ss_dssp TTBCTTSCTHHHHHTT------TSH----HHHHHHHHTT---CCCCCCCCEETTTTHHHHHHHSSSSCEEEEETTCCSSS
T ss_pred CCeeCCCHHHHHHHHh------CHH----HHHHHHHHCC---cCCCCEEEECCHHHHHHHHHHhcCCcEEEEeCCCCCCC
Confidence 5668888999999988 998 4445555788 8887776666655542212 235799999996666666
Q ss_pred cc-------chhhhh---hh---cceeeeecccccccceeeeeccccc
Q psy10837 277 GK-------DMAGVV---AV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 277 GK-------Diasvv---a~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|= |.+.+. .. ...-+-+|.||+- .|+||.-||+.
T Consensus 535 GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~G-~E~~v~Vvgg~ 581 (750)
T 3ln6_A 535 GISIFKTSANLASYEKAIDIAFTEDSAILVEEYIEG-TEYRFFVLEGD 581 (750)
T ss_dssp SCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEETTE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccCC-CEEEEEEECCE
Confidence 54 233333 11 2456889999994 69999988763
No 58
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.82 E-value=0.12 Score=38.47 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeeccc
Q psy10837 261 PKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 261 ~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG 309 (316)
-.||+|||+=...+|.|= |+...+.- .+.-+-.|+||+-.+++.|+=+|
T Consensus 44 ~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~g 108 (108)
T 2cqy_A 44 IGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108 (108)
T ss_dssp HCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred cCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEecC
Confidence 368999999666666554 34333321 13457899999988888888766
No 59
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=91.63 E-value=0.095 Score=57.46 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=52.4
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+..-+...++. .+...+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +|..+.+
T Consensus 100 ~~~~iDaI~pg~g~lsEn~---~~a~~le~~Gi~~iGps~eai~~~~------DK~----~ak~ll~~aG---IPvpp~~ 163 (1236)
T 3va7_A 100 KKTGAQAIIPGYGFLSENA---DFSDRCSQENIVFVGPSGDAIRKLG------LKH----SAREIAERAK---VPLVPGS 163 (1236)
T ss_dssp HHTTCSEEECCSSGGGGCH---HHHHHHHTTTCEESSCCHHHHHHHH------STT----HHHHHHHHTT---CCCCC--
T ss_pred HHhCCCEEEECCccccccH---HHHHHHHHCCCCeeCCCHHHHHHhc------CHH----HHHHHHHHcC---CCCCCee
Confidence 4456888876654332332 34455667899987 8999999999 997 4445556888 8887743
Q ss_pred -ecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhh---------cceeeeecccccccceeeeeccc
Q psy10837 247 -YYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAV---------ANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 247 -~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~---------~~tY~TtEPfId~kYDIriQKIG 309 (316)
...+..+.......-.||+|||+=...+|.|= |+...+.. .+.-+-.|.||+-..++.||-++
T Consensus 164 ~~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~ 243 (1236)
T 3va7_A 164 GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMG 243 (1236)
T ss_dssp ---------------------------------------------------------------------CCEEEEEEEEE
T ss_pred EecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEe
Confidence 33444444222345679999999655565553 44433322 12347789999987788888877
Q ss_pred cc
Q psy10837 310 SN 311 (316)
Q Consensus 310 ~~ 311 (316)
+.
T Consensus 244 Dg 245 (1236)
T 3va7_A 244 DG 245 (1236)
T ss_dssp ES
T ss_pred cC
Confidence 64
No 60
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=91.43 E-value=0.24 Score=47.12 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=75.6
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn 250 (316)
++|.|..-- ++.+ -.++.-+.-. .+..++.+++..+. ||- .+.++.+++| +|.-+.....+
T Consensus 96 ~~D~V~~~~----e~~~-~~~~~~l~~~-~~vgp~~~a~~~~~------dK~----~~k~~l~~~G---ip~p~~~~v~~ 156 (419)
T 4e4t_A 96 LCEAVSTEF----ENVP-AASLDFLART-TFVAPAGRCVAVAQ------DRI----AEKRFIEASG---VPVAPHVVIES 156 (419)
T ss_dssp HCSEEEECC----TTCC-HHHHHHHHTT-SEESSCHHHHHHHT------CHH----HHHHHHHHTT---CCBCCEEEECS
T ss_pred cCCEEEEcc----CcCC-HHHHHHHHcc-CCcCCCHHHHHHhc------CHH----HHHHHHHHcC---cCCCCeEEECC
Confidence 688887421 1111 1223333333 36788999999999 998 4555557889 88877766666
Q ss_pred CcccccccCC----CCCcEEEeec-cccccCcc-------chhhhhhh-cceeeeecccccccceeeeecccc
Q psy10837 251 FKEMVSKMTA----PKYPVVFKIG-HAHSGFGK-------DMAGVVAV-ANTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 251 ~~~m~~k~~~----~~fPvVVKvG-haH~G~GK-------Diasvva~-~~tY~TtEPfId~kYDIriQKIG~ 310 (316)
..+....... - ||+|||+= .+.+|.|= |+...+.. .+.-+-.|.||+..++|.|+-+++
T Consensus 157 ~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~~~Eisv~v~~~ 228 (419)
T 4e4t_A 157 AAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARG 228 (419)
T ss_dssp HHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCCCCeEEEEEEEEc
Confidence 5555211222 4 99999996 45555554 44444422 235678999999878888887753
No 61
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=90.77 E-value=0.55 Score=42.67 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=56.1
Q ss_pred hhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccc
Q psy10837 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHS 274 (316)
Q Consensus 195 l~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~ 274 (316)
...+|+|..++.+++..+. ||- .+.++.+++| +|. |.+. .-.||+|||+=..-+
T Consensus 84 ~~~~~~~~g~~~~a~~~~~------dK~----~~k~~l~~~g---ip~------~~~~-------~ig~P~vvKp~~g~g 137 (363)
T 4ffl_A 84 KEKFSCPVLFDFEAYRISR------DKK----KSKDYFKSIG---VPT------PQDR-------PSKPPYFVKPPCESS 137 (363)
T ss_dssp GGGCSSCBCCCHHHHHHHT------SHH----HHHHHHHHTT---CCC------CCBS-------CSSSCEEEECSSCCT
T ss_pred HHHCCCccCCCHHHHHHhh------CHH----HHHHHHHhcC---CCC------CCce-------ecCCCEEEEECCCCC
Confidence 5678899999999999999 997 4445556788 663 2222 247999999955555
Q ss_pred cCcc----chhhhhhhcceeeeecccccccceeeeeccccc
Q psy10837 275 GFGK----DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 275 G~GK----Diasvva~~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|.|- |.+.+.... ..+-.|.||+- ..+.|+-+++.
T Consensus 138 ~~gv~~v~~~~~~~~~~-~~~~~ee~i~g-~e~sv~~~~d~ 176 (363)
T 4ffl_A 138 SVGARIIYDDKDLEGLE-PDTLVEEYVEG-EVVSLEVVGDG 176 (363)
T ss_dssp TTTCEEEC------CCC-TTCEEEECCCS-EEEEEEEEEES
T ss_pred CcCeEEeccHHHhhhhc-cchhhhhhccC-cEEEEEEEEEC
Confidence 5544 444443333 34557889984 35666666543
No 62
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=89.84 E-value=0.36 Score=42.85 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=62.3
Q ss_pred eeeeccEEEEeccccccCCCchhhhhhhhcCCCCC-CCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeee
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPS-INTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDIT 246 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rniliGl~y~GIPs-vNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt 246 (316)
+..++|.|+.....-. .-.-.+..-|...|+|. .|+.+++..+. ||-+ +.++.+++| +|..+ +
T Consensus 69 ~~~~~d~vi~~~~~~~--~~~a~~~~~l~~~g~~~~~~~~~~~~~~~------dK~~----~~~~l~~~g---ip~p~-~ 132 (331)
T 2pn1_A 69 QDEGVTALLTLIDPEL--GLLAQATERFQAIGVTVIVSPYAACELCF------DKYT----MYEYCLRQG---IAHAR-T 132 (331)
T ss_dssp HHHTCCEEEESSHHHH--HHHHHTHHHHHTTTCEECCCCHHHHHHHH------BHHH----HHHHHHHHT---CCCCC-E
T ss_pred HHcCCCEEEeCCchhH--HHHHHHHHHHHhCCcEEecCCHHHHHHhh------CHHH----HHHHHHHcC---CCCCc-E
Confidence 3457888876422100 00001122344558875 57899999999 9874 444555778 77544 3
Q ss_pred ecCCCccccccc--CCCCCcEEEeeccccccCcc-------chhhhhhhcceeeeecccccccceeeeeccc
Q psy10837 247 YYPNFKEMVSKM--TAPKYPVVFKIGHAHSGFGK-------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 247 ~ypn~~~m~~k~--~~~~fPvVVKvGhaH~G~GK-------Diasvva~~~tY~TtEPfId~kYDIriQKIG 309 (316)
+. ...+....+ ..-.||+|||+=.+.+|.|= |+...+.- ..-+-.|+||+- .++.+.-+.
T Consensus 133 ~~-~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~-~~~~lvee~i~G-~e~~v~~~~ 201 (331)
T 2pn1_A 133 YA-TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK-NTDLIVQELLVG-QELGVDAYV 201 (331)
T ss_dssp ES-SHHHHHHHHHTTSSCSCEEEEESBC------------------------CEEEEECCCS-EEEEEEEEE
T ss_pred Ee-cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh-CCCeEEEecCCC-cEEEEEEEE
Confidence 33 323321112 24579999999666565553 33333321 245778999996 555555544
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=89.22 E-value=0.18 Score=53.94 Aligned_cols=126 Identities=12% Similarity=0.142 Sum_probs=79.0
Q ss_pred eeeeccEEEEeccccccCCCchhhh------hhhhcCCCCCC-CchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcc
Q psy10837 168 RSFKPDMILIRQNLRDAGEDHKNLL------LGFNIGGIPSI-NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENF 240 (316)
Q Consensus 168 RsfkPDFVLiRq~a~~~~~D~rnil------iGl~y~GIPsv-NSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~F 240 (316)
+..+||.|+..-+-. ..-+.. --+.-.|+|.+ ++.+++..+. ||- .+.++.+++| +
T Consensus 79 ~~~~~D~V~p~~g~~----~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~------DK~----~~k~~l~~~G---i 141 (1073)
T 1a9x_A 79 EKERPDAVLPTMGGQ----TALNCALELERQGVLEEFGVTMIGATADAIDKAE------DRR----RFDVAMKKIG---L 141 (1073)
T ss_dssp HHHCCSEEECSSSHH----HHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHH------SHH----HHHHHHHHTT---C
T ss_pred HHhCCCEEEeccCCc----hHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhh------CHH----HHHHHHHHCC---c
Confidence 446889888754420 001111 02345689888 8999999999 987 4455566888 8
Q ss_pred cceeeeecCCCcccccccCCCCCcEEEeeccccccCcc-------chhhhhhhc-----ceeeeecccccccceeeeecc
Q psy10837 241 PLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK-------DMAGVVAVA-----NTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 241 PLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK-------Diasvva~~-----~tY~TtEPfId~kYDIriQKI 308 (316)
|..+....-+..+...-...-.||+|||+-...+|.|= |+...+.-. ..-+-.|.||+-..++.++-+
T Consensus 142 pvp~~~~v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~ 221 (1073)
T 1a9x_A 142 ETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVV 221 (1073)
T ss_dssp CCCSEEEESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEE
T ss_pred CCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEE
Confidence 88776665555443211223469999999766665554 444444211 235788999997667777766
Q ss_pred cc
Q psy10837 309 GS 310 (316)
Q Consensus 309 G~ 310 (316)
++
T Consensus 222 ~d 223 (1073)
T 1a9x_A 222 RD 223 (1073)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 64
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=89.21 E-value=0.44 Score=44.80 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=78.6
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn 250 (316)
++|.|...-.... .+ .+.-+.-.| +..++.+++..+. ||- ...++.+++| +|.-+....-+
T Consensus 42 ~~d~it~e~e~v~--~~---~l~~l~~~~-~v~p~~~a~~~~~------DK~----~~k~~l~~~G---Iptp~~~~v~~ 102 (355)
T 3eth_A 42 QQSVITAEIERWP--ET---ALTRQLARH-PAFVNRDVFPIIA------DRL----TQKQLFDKLH---LPTAPWQLLAE 102 (355)
T ss_dssp TTSEEEESCSCCC--CC---HHHHHHHTC-TTBTTTTHHHHHH------SHH----HHHHHHHHTT---CCBCCEEEECC
T ss_pred cCCEEEECcCCcC--HH---HHHHHHhcC-CcCCCHHHHHHhc------CHH----HHHHHHHHCc---cCCCCEEEECC
Confidence 7777776644332 22 344444445 8999999999999 998 4455556888 89888777777
Q ss_pred CcccccccCCCCCcEEEeeccc-cccCcc----c--hhhhhh-hcceeeeecccccccceeeeeccc
Q psy10837 251 FKEMVSKMTAPKYPVVFKIGHA-HSGFGK----D--MAGVVA-VANTYCTTEPYIDSKFDVHVQKIG 309 (316)
Q Consensus 251 ~~~m~~k~~~~~fPvVVKvGha-H~G~GK----D--iasvva-~~~tY~TtEPfId~kYDIriQKIG 309 (316)
..+...-...-.||+|||+=.. .+|.|- + .+.+-+ +.. -+-.|.||+..+.|-|+-++
T Consensus 103 ~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~~~~Eisv~v~~ 168 (355)
T 3eth_A 103 RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYG-ECIVEQGINFSGEVSLVGAR 168 (355)
T ss_dssp GGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGGTT-TEEEEECCCCSEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHhhC-CEEEEEccCCCcEEEEEEEE
Confidence 6655221223469999999653 555554 4 444432 222 37889999977788887764
No 65
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=88.12 E-value=0.56 Score=48.98 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=67.7
Q ss_pred CCC-CCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCccccccc-CCCCCcEEEeeccccccC
Q psy10837 199 GIP-SINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKM-TAPKYPVVFKIGHAHSGF 276 (316)
Q Consensus 199 GIP-svNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~-~~~~fPvVVKvGhaH~G~ 276 (316)
|++ +-+|..++-.+. ||- ...++.++.| +|..+...+.+..+.+..+ ..-.||+|||+=.+.+|.
T Consensus 473 ~~~t~~~s~~aa~~~~------DK~----~tk~lL~~~G---IPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~ 539 (757)
T 3ln7_A 473 GNMTSHDSYISPLIME------NKV----VTKKVLQKAG---FNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGL 539 (757)
T ss_dssp TTBCSSSBSHHHHHHH------HSH----HHHHHHHHHT---CCCCCEEEESCHHHHHHGGGGSSSSCEEEEESSCSTTT
T ss_pred CccCCCCHHHHHHHhc------CHH----HHHHHHHHCC---cCCCCEEEECCHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 444 346788888888 887 4455556788 9988877777765542223 345799999997777775
Q ss_pred cc-----------chhhhhhh---cceeeeecccccccceeeeeccccc
Q psy10837 277 GK-----------DMAGVVAV---ANTYCTTEPYIDSKFDVHVQKIGSN 311 (316)
Q Consensus 277 GK-----------Diasvva~---~~tY~TtEPfId~kYDIriQKIG~~ 311 (316)
|= |+...+.. .+.-+-+|.||+- .|+||+-||+.
T Consensus 540 GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~G-~Ei~v~Vlggk 587 (757)
T 3ln7_A 540 GITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVG-TEYRFFVLGDE 587 (757)
T ss_dssp TCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCCS-EEEEEEEETTE
T ss_pred CeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCC-cEEEEEEECCE
Confidence 53 23333321 2356889999985 79999999874
No 66
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=86.68 E-value=1.4 Score=42.55 Aligned_cols=125 Identities=22% Similarity=0.206 Sum_probs=77.2
Q ss_pred eccEEEEeccccccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCC
Q psy10837 171 KPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250 (316)
Q Consensus 171 kPDFVLiRq~a~~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn 250 (316)
.+||++-+-.. +.-....+.=+..-|.+++|++++++... ||-.++..|.+ .| +|+ +.|.+-+
T Consensus 57 ~~d~lisf~s~---gfpl~kai~y~~lr~p~~INd~~~q~~~~------DK~~~~~iL~~----~g---IPt-P~t~~~~ 119 (330)
T 3t7a_A 57 LCDCLISFHSK---GFPLDKAVAYAKLRNPFVINDLNMQYLIQ------DRREVYSILQA----EG---ILL-PRYAILN 119 (330)
T ss_dssp CCSEEEECCCT---TCCHHHHHHHHHHHCCEESBCSTHHHHHT------BHHHHHHHHHH----TT---CCC-CCEEEEC
T ss_pred cCCEEEEeccC---CCcHHHHHHHHHHhCCceeCCHHHHHHHH------HHHHHHHHHHH----cC---CCC-CCEEEEe
Confidence 45777765332 44444556667778899999999999999 99977666554 44 664 3333322
Q ss_pred C-------ccccc-----cc--CCCCCcEEEeecccc-----------ccCcc--------ch------hhhhhhcceee
Q psy10837 251 F-------KEMVS-----KM--TAPKYPVVFKIGHAH-----------SGFGK--------DM------AGVVAVANTYC 291 (316)
Q Consensus 251 ~-------~~m~~-----k~--~~~~fPvVVKvGhaH-----------~G~GK--------Di------asvva~~~tY~ 291 (316)
. .+|+. +. ..-.+|+|+|+=.+. +|-|. |- .+.+.-...|.
T Consensus 120 rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i 199 (330)
T 3t7a_A 120 RDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYI 199 (330)
T ss_dssp CBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEE
T ss_pred CCCCCccccceeccchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEE
Confidence 2 11210 00 112499999995553 44444 22 22333334554
Q ss_pred eecccccc-cceeeeeccccccc
Q psy10837 292 TTEPYIDS-KFDVHVQKIGSNYK 313 (316)
Q Consensus 292 TtEPfId~-kYDIriQKIG~~YK 313 (316)
.|.||+. -.||||--||.+|=
T Consensus 200 -~QEFI~~~G~DIRv~vVG~~vv 221 (330)
T 3t7a_A 200 -YEEFMPTDGTDVKVYTVGPDYA 221 (330)
T ss_dssp -EEECCCCSSEEEEEEEESTTCE
T ss_pred -EEeccCCCCceEEEEEECCEEE
Confidence 4889984 79999999999873
No 67
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=62.38 E-value=2.7 Score=36.46 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=48.8
Q ss_pred cCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccc-----cccCcc--------chhhhh
Q psy10837 218 VLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHA-----HSGFGK--------DMAGVV 284 (316)
Q Consensus 218 ~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGha-----H~G~GK--------Diasvv 284 (316)
.|||- +..++.++.| +|..+.....+..+...-...-.||+|||+=.. ..+-|. |+...+
T Consensus 19 ~l~k~----~~k~ll~~~G---Ip~p~~~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~ 91 (238)
T 1wr2_A 19 AMVEY----EAKQVLKAYG---LPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKW 91 (238)
T ss_dssp EECHH----HHHHHHHTTT---CCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHH
T ss_pred CCCHH----HHHHHHHHcC---cCCCCeEEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHH
Confidence 34665 5566677888 887776666554443111112469999999544 222222 222222
Q ss_pred ----hhc--------ceeeeecccccccceeeeecccc
Q psy10837 285 ----AVA--------NTYCTTEPYIDSKFDVHVQKIGS 310 (316)
Q Consensus 285 ----a~~--------~tY~TtEPfId~kYDIriQKIG~ 310 (316)
... ..-+-+|+||+....+.|.-+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d 129 (238)
T 1wr2_A 92 EEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTED 129 (238)
T ss_dssp HHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEE
T ss_pred HHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeC
Confidence 111 14678999998655666665544
No 68
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=60.21 E-value=11 Score=35.22 Aligned_cols=82 Identities=10% Similarity=0.001 Sum_probs=48.1
Q ss_pred hhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccc
Q psy10837 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHS 274 (316)
Q Consensus 195 l~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~ 274 (316)
+...|+|.+-+...+.--. ||-... ++.+++| +|. +.+| ...+. .-.||+|||+=.+-+
T Consensus 79 le~~~~p~~p~~~~l~~~~------dr~~~~----~~l~~~G---ip~-P~~~--~~ee~-----~i~~PviVKp~~g~g 137 (320)
T 2pbz_A 79 IEKAKARFFGNRRFLKWET------TFELQD----KALEGAG---IPR-VEVV--EPEDA-----KPDELYFVRIEGPRG 137 (320)
T ss_dssp HHTCCSCCBSCSSGGGGGS------CHHHHH----HHHHHHT---CCB-CCBC--CSCCC-----CSSCCEEEECC----
T ss_pred HHHcCCCcCCCHHHHHHHH------hHHHHH----HHHHHCC---cCC-CCee--CHhHc-----CcCCcEEEEECCCCC
Confidence 4567889888887777667 885322 5677999 776 3333 22332 357999999966666
Q ss_pred cCcc----chhhhhhhcc---eeeeeccccc
Q psy10837 275 GFGK----DMAGVVAVAN---TYCTTEPYID 298 (316)
Q Consensus 275 G~GK----Diasvva~~~---tY~TtEPfId 298 (316)
|-|- | +.+-.... ..+-.|-||+
T Consensus 138 gkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 138 GSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp --------C-EECSCCCC----CCEEEECCC
T ss_pred CCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 6554 5 55543221 3478888888
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=55.85 E-value=4.2 Score=39.40 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeec--CCC------------------------cc
Q psy10837 200 IPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNF------------------------KE 253 (316)
Q Consensus 200 IPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~y--pn~------------------------~~ 253 (316)
..-||-.-..+..| -|-=+...|.+ . +.|++.+-.++.||- |.- .+
T Consensus 62 ~Q~vNhfPg~~~l~------rKd~L~~nl~~-~-~~~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~ 133 (380)
T 3tig_A 62 VQLVNYYRGADKLC------RKASLVKLIKT-S-PELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREE 133 (380)
T ss_dssp CCEESCCTTTHHHH------SHHHHHHHHHH-C-HHHHTTCTTSCCEEECCC------------------------CCHH
T ss_pred ceEEeecCCccccc------ccHHHHHHHHH-h-hhcccccCcCCcceeeCccccccccccccccccccccccchhHHHH
Confidence 45566666666667 66655555544 2 246678889999987 541 11
Q ss_pred ccccc-----CCCCCcEEEeeccccccCcc----chhhhhh---------hcceeeeecc-cc--c-ccceeeeecc
Q psy10837 254 MVSKM-----TAPKYPVVFKIGHAHSGFGK----DMAGVVA---------VANTYCTTEP-YI--D-SKFDVHVQKI 308 (316)
Q Consensus 254 m~~k~-----~~~~fPvVVKvGhaH~G~GK----Diasvva---------~~~tY~TtEP-fI--d-~kYDIriQKI 308 (316)
++... ....-+.|+|++..+.|-|= +...+.+ +.+.|+. .| .| + .|+|||+=-+
T Consensus 134 F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~-~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 134 FRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLE-SPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp HHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHHHHHHHHHHTSCEEEEECCS-SBCCBTTTTBCEEEEEEEE
T ss_pred HHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhccCCcEEEEeccc-CceeecCCCceeEEEEEEE
Confidence 21101 13567999999999999886 4444432 3345553 24 34 4 6999998543
No 70
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=28.77 E-value=69 Score=30.09 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=39.0
Q ss_pred hhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccc
Q psy10837 195 FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHS 274 (316)
Q Consensus 195 l~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~ 274 (316)
....|+|.+.+...+.--. ||-+.. ++.+++| +|--. ++.+..+. .||+|||+=..-+
T Consensus 105 ~~~~g~~v~g~~~a~~~e~------~k~~~k----~~l~~~G---Iptp~--~~~~~~e~-------~~PvVVK~~~~a~ 162 (361)
T 2r7k_A 105 ENSFLVPMFGNRRILRWES------ERSLEG----KLLREAG---LRVPK--KYESPEDI-------DGTVIVKFPGARG 162 (361)
T ss_dssp HHTCCSCBBSCGGGGGTTT------CHHHHH----HHHHHTT---CCCCC--EESSGGGC-------CSCEEEECSCCCC
T ss_pred HHHcCCCcCCCHHHHHHhh------hHHHHH----HHHHHcC---cCCCC--EeCCHHHc-------CCCEEEeeCCCCC
Confidence 3478999888877776556 786433 5666888 77653 34444443 4899999944446
Q ss_pred cCcc
Q psy10837 275 GFGK 278 (316)
Q Consensus 275 G~GK 278 (316)
|-|=
T Consensus 163 GkGv 166 (361)
T 2r7k_A 163 GRGY 166 (361)
T ss_dssp ---E
T ss_pred CCCE
Confidence 6554
No 71
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=24.80 E-value=26 Score=22.84 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=10.5
Q ss_pred CCCCCCCCccccc
Q psy10837 52 RTTSAPTSPAKTR 64 (316)
Q Consensus 52 ~~tSaPtSPA~~r 64 (316)
++-||||||--+.
T Consensus 2 rsksaptspcdqe 14 (31)
T 2wh0_Q 2 RSKSAPTSPCDQE 14 (31)
T ss_pred ccccCCCCchHHH
Confidence 5789999998665
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=20.57 E-value=69 Score=30.50 Aligned_cols=49 Identities=16% Similarity=-0.002 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCc-EEEeecc--ccccCcc
Q psy10837 227 HLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYP-VVFKIGH--AHSGFGK 278 (316)
Q Consensus 227 ~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fP-vVVKvGh--aH~G~GK 278 (316)
+..++.++.| +|..+.....+..+.......-.|| +|||+=. +|.|.|.
T Consensus 7 ~aK~lL~~~G---Ipvp~~~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~g 58 (388)
T 2nu8_B 7 QAKQLFARYG---LPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAG 58 (388)
T ss_dssp HHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTT
T ss_pred HHHHHHHHCC---cCCCCeeEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccC
Confidence 5566777888 8887777766655542212223689 9999944 3455443
No 73
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=20.05 E-value=68 Score=30.67 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCcccceeeeecCCCcccccccCCCCCcEEEeecc--ccccCc------cchhhhhhh------------
Q psy10837 227 HLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGH--AHSGFG------KDMAGVVAV------------ 286 (316)
Q Consensus 227 ~L~~i~k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGh--aH~G~G------KDiasvva~------------ 286 (316)
+-.+|.++.| +|.-+-....+..|...-...-.||+|||+=. +|.|-+ +|-+.+...
T Consensus 7 ~aK~lL~~~G---Ipvp~~~~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~ 83 (397)
T 3ufx_B 7 QAKEILARYG---VPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGL 83 (397)
T ss_dssp HHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHCC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCC
Confidence 4456777888 88887777777655421111224999999954 233211 132222211
Q ss_pred cceeeeecccccccceeeeecc
Q psy10837 287 ANTYCTTEPYIDSKFDVHVQKI 308 (316)
Q Consensus 287 ~~tY~TtEPfId~kYDIriQKI 308 (316)
...-+-.|+||+....+.+.-.
T Consensus 84 ~~~~vlVEe~v~~g~El~vgv~ 105 (397)
T 3ufx_B 84 TVKKVLVAEAVDIAKEYYAGLI 105 (397)
T ss_dssp ECCCEEEEECCCEEEEEEEEEE
T ss_pred ccceEEEEEeecCCeeEEEEEE
Confidence 1134678888886666665544
Done!