RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10837
(316 letters)
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 231 bits (591), Expect = 4e-75
Identities = 116/224 (51%), Positives = 155/224 (69%), Gaps = 21/224 (9%)
Query: 104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGG 163
+ LLV+D+ +TDW+K FRG+++ GDYD++VEQAEF EL+L A+ D V M V R G
Sbjct: 1 KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNG 60
Query: 164 TKVVRSFKPDMILIRQN--LRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDK 221
TKVVRSF+PD +LIRQ+ ED ++L++G G+PSIN+L+ +YNF DK
Sbjct: 61 TKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFC------DK 114
Query: 222 PWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK--- 278
PWVFA ++ + + LG E FPLI+ TYYPN +EM +T P +PVV KIGHAHSG GK
Sbjct: 115 PWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM---LTLPTFPVVVKIGHAHSGMGKVKV 171
Query: 279 -------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
D+A VVA+ TY T EP+ID+K+D+ VQKIG+NYKA+
Sbjct: 172 ENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAY 215
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 229 bits (584), Expect = 1e-72
Identities = 126/317 (39%), Positives = 180/317 (56%), Gaps = 23/317 (7%)
Query: 13 DKFQDQSSFVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQ 72
+ + PP P+ + G + ++ ++P +P+
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79
Query: 73 SLTGQARDQGASIIGAMTQTASAAR--ASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGD 130
SL+ + A+ ++ A LLVID+ +TDW+KYF+G+++HG+
Sbjct: 80 SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGKKIHGE 139
Query: 131 YDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDA--GEDH 188
D++VEQAEF +L+L A+ + G V M V R G KVVRS KPD +LIRQ+ D+
Sbjct: 140 IDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDY 199
Query: 189 KNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYY 248
++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T+Y
Sbjct: 200 RSLVIGLQYAGIPSVNSLHSVYNFC------DKPWVFAQMVRLHKKLGTEEFPLIDQTFY 253
Query: 249 PNFKEMVSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYID 298
PN KEM +++ YPVV K+GHAHSG GK D+A VVA+ TY T EP+ID
Sbjct: 254 PNHKEM---LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID 310
Query: 299 SKFDVHVQKIGSNYKAF 315
+K+DV VQKIG NYKA+
Sbjct: 311 AKYDVRVQKIGQNYKAY 327
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 211 bits (538), Expect = 1e-66
Identities = 116/235 (49%), Positives = 159/235 (67%), Gaps = 22/235 (9%)
Query: 94 SAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGC 153
++ R LLVIDD +TDWSKYF G++++G+ ++RVEQAEF EL+L A GC
Sbjct: 7 PPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGC 66
Query: 154 VVSMAVFRGGTKVV-RSFKPDMILIRQNLRDA--GEDHKNLLLGFNIGGIPSINTLQGVY 210
+V M V R GTKVV RSFKPD IL+RQ+ GED+++L++G GG+P++N+L VY
Sbjct: 67 MVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVY 126
Query: 211 NFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIG 270
NF KPWVF+ L+++ LG E FPL++ T++PN K M +TAP +PVV K+G
Sbjct: 127 NFC------SKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPM---VTAPHFPVVVKLG 177
Query: 271 HAHSGFG----------KDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
HAH+G G +D+ VVA+A TY TTE +IDSK+D+ +QKIGSNYKA+
Sbjct: 178 HAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAY 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 4e-07
Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 116/273 (42%)
Query: 81 QGASIIGAMT----QTASAARASYNK-DRC------FSLLVIDDQN-TDWSKYF---RGR 125
QG+ G M +T+ AA+ +N+ D FS+L I N + + +F +G+
Sbjct: 1624 QGSQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 126 RLHGDY---------DVRVEQAE-FKEL-----SLTANGDLG------------CVVSMA 158
R+ +Y D +++ + FKE+ S T + G ++ A
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 159 VFRGGTKVVRS---FKPDMILIRQNLRDAGEDHKNLLLG-FN----IGGIPSINTLQGVY 210
F ++S D AG H LG + +
Sbjct: 1743 AFE----DLKSKGLIPADATF-------AG--HS---LGEYAALASLAD----------- 1775
Query: 211 NFQVPKLVLDKPWVFAHLLQL--QR-----------KLGKENFPLIDITYYPNFKEMVSK 257
V+ L+++ R +LG+ N+ +I I N + +
Sbjct: 1776 -------VMS----IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI----NPGRVAAS 1820
Query: 258 MT--APKYPVVFKIGHAHSGFGKDMAGVVAVAN 288
+ A +Y VV ++G +G +V + N
Sbjct: 1821 FSQEALQY-VVERVG-KRTG------WLVEIVN 1845
Score = 43.5 bits (102), Expect = 8e-05
Identities = 52/319 (16%), Positives = 84/319 (26%), Gaps = 107/319 (33%)
Query: 16 QDQSSFVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLT 75
Q Q F LP T G + D PT+PA L+ +
Sbjct: 32 QLQEQFNKI---LPEPTEG---FAAD-------------DEPTTPA----ELVGKFLGYV 68
Query: 76 GQARDQGASIIGAMTQTASAARASYNK-DRCF-----------SLLVIDDQNTDWSK--- 120
+ Q + + C+ LL +D +K
Sbjct: 69 SSLVEPSKV-----GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 121 --YFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIR 178
Y R + + + G+ +A+F GG
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQL---VAIF-GG--------------- 162
Query: 179 Q-N-------LRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQ 230
Q N LRD + + L+ I S TL ++ + LD VF L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDL-I--KFSAETLS-----ELIRTTLDAEKVFTQGLN 214
Query: 231 LQRKLGKEN--------------FPLIDIT----YYPNFKEMVSKMTAPKYPVVFKIGHA 272
+ L + PLI + Y K + T P +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLGFT-PG--ELRSYLKG 269
Query: 273 HSGFGKD--MAGVVAVANT 289
+G + A +A ++
Sbjct: 270 ATGHSQGLVTAVAIAETDS 288
Score = 43.1 bits (101), Expect = 1e-04
Identities = 40/301 (13%), Positives = 73/301 (24%), Gaps = 128/301 (42%)
Query: 20 SFVSTAP---PL-----------PARTAGGPPSSGDLSLNLSKQSSRT----TSAPTSPA 61
++ + P PL A+ G P G+L L + + T+ +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAET 286
Query: 62 KTRESLLQ--------------RVQ----------------------------SLTGQAR 79
+ ES R S++ +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 80 DQGASIIGAMTQTASAAR----ASYNKDRCF-------SL--LVI----------DDQNT 116
+Q + A + + N + SL L + DQ
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-- 404
Query: 117 DWSKY-FRGRRL-------------HGDY-----DVRVEQAEFKELSLTANGDLGCVVSM 157
S+ F R+L H D+ + +S A D+
Sbjct: 405 --SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQI---- 457
Query: 158 AVFRGGT-KVVRSFKPDMI--LIRQNLRD---------AGEDHKNLLLGFNIGGIPSINT 205
V+ +R + ++ +R H +L F GG +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---ILDFGPGGASGLGV 514
Query: 206 L 206
L
Sbjct: 515 L 515
Score = 37.0 bits (85), Expect = 0.008
Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 69/226 (30%)
Query: 63 TRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASY--NKDRCFSLLVIDDQNTDWSK 120
T L ++ TG ++ ++ A+ + + S+ + + ++L
Sbjct: 259 TPGELRSYLKGATGHSQG----LVTAVAIAETDSWESFFVSVRKAITVL----------- 303
Query: 121 YFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKV-VRSFKPDMILIRQ 179
+F G R + Y E SL N + G M T+ V+ + + +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSL-ENNE-GVPSPMLSISNLTQEQVQDY------VNK 355
Query: 180 -NLRDAGEDHKNLLL--G---FNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQ--- 230
N + L G + G P +L G+ L L K + L Q
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQ--SLYGL------NLTLRKAKAPSGLDQSRI 407
Query: 231 --LQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHS 274
+RK + P + +P F HS
Sbjct: 408 PFSERK------LKFSNRFLP--------VASP-----F-----HS 429
Score = 28.5 bits (63), Expect = 3.4
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 45/148 (30%)
Query: 179 QNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPK--------------LVLDKPWV 224
Q++ + ++H GF+I I N + +F K ++D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 225 FAHLLQ-LQRKLGKENF--P--LIDITYY--P--------NFKEMVSKMTAPKYPVVFKI 269
+ + + F L+ T + P F+++ SK P F
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA-DATF-A 1760
Query: 270 GH--------AHSGFGKDMAGVVAVANT 289
GH A +A V+++ +
Sbjct: 1761 GHSLGEYAALAS------LADVMSIESL 1782
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 41/300 (13%), Positives = 89/300 (29%), Gaps = 90/300 (30%)
Query: 59 SPAKTRESLLQ----RVQSLTGQARD---QGASIIGAMTQ----------------TASA 95
+P + + LL+ R Q L + + SII + +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 96 ARASYNK------DRCFSLLVIDDQNTD---------WSKYFRGRRLHGDYDVRVEQAEF 140
+S N + F L + + W + DV V +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SDVMVVVNKL 411
Query: 141 KELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMIL-IRQNLRDAGEDHKNLLLGFNIGG 199
+ SL K P + L ++ L + H++++ +NI
Sbjct: 412 HKYSL-VEKQ-------------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-- 455
Query: 200 IPSINTLQGVYNFQVPKLVLDKPWVFA----HLLQLQRKLGKENFPLIDITYYPNFKEMV 255
+ + + LD+ + ++ HL ++ F ++ + +F+ +
Sbjct: 456 ------PKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFRMV----FLDFRFLE 504
Query: 256 SKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
K + A + G + + Y +PYI D +++ + F
Sbjct: 505 QK--------IRHDSTAWNASG-SILNTLQQLKFY---KPYI-CDNDPKYERLVNAILDF 551
Score = 37.1 bits (85), Expect = 0.008
Identities = 39/305 (12%), Positives = 76/305 (24%), Gaps = 110/305 (36%)
Query: 62 KTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCF--------SLLVIDD 113
+ E++L+ +Q L Q S + + + R LLV+ +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 114 -QNTDWSKYFRGR--------------RLHGDYDVRVEQAEFKE-------LSLTAN--- 148
QN F L + SL
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 149 ---GDL---GCVVS-MAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIP 201
DL + + ++ D + N + D ++
Sbjct: 313 CRPQDLPREVLTTNPRRL-----SIIAESIRDGLATWDNWKHVNCDKLTTIIES------ 361
Query: 202 SINTL-----QGVYN----FQ----VPKLVLDKPW------------------------- 223
S+N L + +++ F +P ++L W
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 224 ----VFAHLLQLQRKLGKENFP-----LIDITY-----YPNFKEMVSKMTAPKYPVVFK- 268
+ + L+ K+ EN ++D Y + + +Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDL--IPPYLDQY--FYSH 476
Query: 269 IGHAH 273
IGH H
Sbjct: 477 IGH-H 480
Score = 35.2 bits (80), Expect = 0.030
Identities = 33/212 (15%), Positives = 60/212 (28%), Gaps = 67/212 (31%)
Query: 128 HGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFK----PDMILIRQNLRD 183
H D++ Q ++K++ ++VF V +F DM + L
Sbjct: 6 HMDFETGEHQYQYKDI-------------LSVFE--DAFVDNFDCKDVQDM--PKSILSK 48
Query: 184 AGEDHKNLLLGFNIGGIPS--------INTL-----QGVYNFQVPKLVLDKPWVFA--HL 228
DH I TL + V F L ++ ++ +
Sbjct: 49 EEIDH--------IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 229 LQLQRKLGKENF-PLIDITYYPNFKEMVSKMTAPKYPVVFKIGHA------------H-- 273
Q Q + + D Y N ++ +K + K+ A
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 274 SGFGKDMAGVVAVANTYCTTEPYIDSKFDVHV 305
G GK + C + + K D +
Sbjct: 159 LGSGKT----WVALDV-CLSYK-VQCKMDFKI 184
Score = 35.2 bits (80), Expect = 0.032
Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 38/182 (20%)
Query: 103 DRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVE--QAEFKELSLTANGDLGCVVSM--- 157
R F L+ + + + F L +Y + + E ++ S+ + +
Sbjct: 65 LRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 158 -AVFRGGTKVVRSFKPDMIL-IRQNLRDAGEDHKNLLL-GFNIGGI-PSINTLQGVYNFQ 213
VF V R L +RQ L + KN+L+ G + G + L +++
Sbjct: 123 NQVFAKYN-VSR---LQPYLKLRQALLEL-RPAKNVLIDG--VLGSGKTWVALDVCLSYK 175
Query: 214 VPKLVLDKP--WVFAHLLQLQRKLGKENFP--LIDI---TYY---PNFKEMVSKMTAPKY 263
V + +D W+ L N P ++++ Y PN+ + K
Sbjct: 176 V-QCKMDFKIFWL---------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 264 PV 265
+
Sbjct: 226 RI 227
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 28.0 bits (63), Expect = 1.1
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 233 RKLGKEN--FPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAH-SGFGKDM 280
R + F +I++ P E + + PVV G SGF DM
Sbjct: 19 RAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVI-AGDLSWSGFRPDM 68
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 27.7 bits (62), Expect = 4.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 56 APTSPAKTRESLLQRVQSLTGQARDQGASII 86
P + A+TRE ++ R+ + +A +GA+ I
Sbjct: 12 GPIARAETREQVVVRLLDMLTKAASRGANFI 42
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 27.3 bits (61), Expect = 6.8
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 227 HLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPK 262
++ + FP + YP MV M +P
Sbjct: 232 ERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPS 267
>3kio_C Ribonuclease H2 subunit C; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_C
Length = 166
Score = 26.7 bits (58), Expect = 7.3
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 110 VIDDQNTDWSKYFRGRRLHG 129
+ FRGR L G
Sbjct: 51 AVRHDADGLQASFRGRGLRG 70
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 27.1 bits (60), Expect = 8.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 249 PNFKEMV-SKMTAPKYPVVFKIGHAHSGFGKDM 280
P + MV T P + VFK+ K+M
Sbjct: 316 PGIRGMVMLVFTLPGFDRVFKVIKDKFAPQKEM 348
>1e6y_A Methyl-coenzyme M reductase subunit alpha; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
a.89.1.1 d.58.31.2
Length = 569
Score = 27.2 bits (60), Expect = 8.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 19 SSFVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAK 62
++ VS LPAR A GP G LS +T+ PAK
Sbjct: 271 AALVSMGEMLPARRARGPNEPGGLSFGHLSDIVQTSRVSEDPAK 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,621,767
Number of extensions: 268699
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 18
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)