RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10837
         (316 letters)



>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 102

 Score =  170 bits (433), Expect = 2e-54
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGG 163
           +   LLV+D+ +TDW+K FRG+++ GDYD++VEQAEF EL+L A+ D    V M V R G
Sbjct: 1   KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNG 60

Query: 164 TKVVRSFKPDMILIRQNLR--DAGEDHKNLLLGFNIGGIPSI 203
           TKVVRSF+PD +LIRQ+       ED ++L++G    G+PSI
Sbjct: 61  TKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI 102


>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 19/123 (15%)

Query: 204 NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKY 263
           N+L+ +YNF       DKPWVFA ++ + + LG E FPLI+ TYYPN +EM   +T P +
Sbjct: 1   NSLESIYNFC------DKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM---LTLPTF 51

Query: 264 PVVFKIGHAHSGFG----------KDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYK 313
           PVV KIGHAHSG G          +D+A VVA+  TY T EP+ID+K+D+ VQKIG+NYK
Sbjct: 52  PVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYK 111

Query: 314 AFQ 316
           A+ 
Sbjct: 112 AYM 114


>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
          {Agrobacterium sp. [TaxId: 361]}
          Length = 303

 Score = 32.7 bits (73), Expect = 0.050
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 56 APTSPAKTRESLLQRVQSLTGQARDQGASII 86
           P + A+TRE ++ R+  +  +A  +GA+ I
Sbjct: 12 GPIARAETREQVVVRLLDMLTKAASRGANFI 42


>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal
           domain {Trypanosoma rangeli [TaxId: 5698]}
          Length = 222

 Score = 28.9 bits (65), Expect = 0.61
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 114 QNTDWSKYFRGRRLHGDYDVRVEQAEFKELS 144
            +   S Y  G+ L G  +  V  A   ++S
Sbjct: 144 ADRQGSVYVDGQPLAGSGNTVVRGATLPDIS 174


>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
           coli [TaxId: 562]}
          Length = 76

 Score = 27.0 bits (59), Expect = 0.88
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 221 KPW-VFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKD 279
           +   V  H  +   +    +F +I++   P   E +      + PVV     + SGF  D
Sbjct: 8   RNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLSWSGFRPD 67

Query: 280 M 280
           M
Sbjct: 68  M 68


>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 74

 Score = 25.4 bits (55), Expect = 2.6
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 245 ITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDM 280
           I+     ++ V  +   + PVV   G   SGF  + 
Sbjct: 33  ISLDDEARDYVMALGYVQAPVVEVDGEHWSGFRPER 68


>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019
           {Anabaena variabilis [TaxId: 1172]}
          Length = 131

 Score = 26.3 bits (58), Expect = 2.8
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 51  SRTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNK-DRCFSL- 108
           +    AP      +ES+ + +  +T  +  Q   I+G    TA     +           
Sbjct: 15  NCLDIAPILKPSEKESVRRALILITKLSDYQ---ILGICADTADEGLLAMKTYSHALGYE 71

Query: 109 LVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLG 152
           + ID    +   Y +    +G   +       + + ++      
Sbjct: 72  VPIDLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYE 115


>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal
           domain {Parasitic flagellate protozoan (Trypanosoma
           cruzi) [TaxId: 5693]}
          Length = 225

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 114 QNTDWSKYFRGRRLHGDYDVRVEQAEFKELS 144
            N   S Y  G  L G     V      ++S
Sbjct: 144 ANKIGSVYIDGEPLEGSGQTVVPDERTPDIS 174


>d1azoa_ c.52.1.14 (A:) DNA mismatch repair protein MutH from
          {Escherichia coli [TaxId: 562]}
          Length = 226

 Score = 25.2 bits (55), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 57 PTSPAKTRESLLQRVQSLTGQ 77
            SP +T E LL + Q L+G 
Sbjct: 4  LLSPPETEEQLLAQAQQLSGY 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,105,842
Number of extensions: 48840
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 9
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)