BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10839
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DG9|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Hepes
pdb|1Z12|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Vanadate
pdb|1Z13|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Molybdate
pdb|1PHR|A Chain A, The Crystal Structure Of A Low Molecular Phosphotyrosine
Protein Phosphatase
pdb|1PNT|A Chain A, Crystal Structure Of Bovine Heart Phosphotyrosyl
Phosphatase At 2.2 Angstroms Resolution
pdb|1BVH|A Chain A, Solution Structure Of A Low Molecular Weight Protein
Tyrosine Phosphatase
Length = 157
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
KSVLF+C N RSP+ +++F++++ N ++ W+++S + W+VG+ DPRA
Sbjct: 6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRN 65
Query: 77 YGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPP--DSSAQLVKLGTFTRKAKF 134
+G++T H R++TK+DF FDYI+ DE++L L ++ + A++ LG++ + +
Sbjct: 66 HGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQL 125
Query: 135 QGPSDLPDPFF 145
+ DP++
Sbjct: 126 I----IEDPYY 132
>pdb|1C0E|A Chain A, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
pdb|1C0E|B Chain B, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
Length = 157
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
KSVLF+C N R+P+ +++F++++ N ++ W+++S + W+VG+ DPRA
Sbjct: 6 KSVLFVCLGNICRAPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRN 65
Query: 77 YGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPP--DSSAQLVKLGTFTRKAKF 134
+G++T H R++TK+DF FDYI+ DE++L L ++ + A++ LG++ + +
Sbjct: 66 HGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQL 125
Query: 135 QGPSDLPDPFF 145
+ DP++
Sbjct: 126 I----IEDPYY 132
>pdb|1XWW|A Chain A, Crystal Structure Of Human B-Form Low Molecular Weight
Phosphotyrosyl Phosphatase At 1.6 Angstrom Resolution
Length = 157
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
+ KSVLF+C N RSP+ +++F++++ N + W+++S + W+VG+ DPRA
Sbjct: 3 QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRAVSC 62
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPP--DSSAQLVKLGTFTRK 131
+G+ T H R+ITK+DF FDYI+ DE++L L ++ A++ LG++ +
Sbjct: 63 LRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQ 122
Query: 132 AKFQGPSDLPDPFF 145
+ + DP++
Sbjct: 123 KQLI----IEDPYY 132
>pdb|2P4U|A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|B Chain B, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|C Chain C, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|D Chain D, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
Length = 168
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERC 74
G KSVLF+C N RSP+ +++F++++ ++ W ++S+ + W+VG+ DPRA
Sbjct: 7 GSKSVLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNVGRPPDPRAVSCL 66
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPP--DSSAQLVKLGTFTRKA 132
+G+ T H R+ITK+DF FDYI+ DE++L L ++ + A++ LG++ +
Sbjct: 67 RNHGISTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQK 126
Query: 133 KFQGPSDLPDPFF 145
+ + DP++
Sbjct: 127 QLI----IEDPYY 135
>pdb|5PNT|A Chain A, Crystal Structure Of A Human Low Molecular Weight
Phosphotyrosyl Phosphatase. Implications For Substrate
Specificity
pdb|3N8I|A Chain A, Crystal Structure Of The A Isoform Of Human Cytoplasmic
Protein Tyrosine Phosphatase (Hcptp-A) In Complex With
1-Naphtylacetic Acid
Length = 157
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
+ KSVLF+C N RSP+ +++F++++ N + W V+SA +++G D R +
Sbjct: 3 QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSC 62
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIATDETDL 107
+ +G+ HV R+ITK+DF FDYI+ DE++L
Sbjct: 63 MKRHGIPMSHVARQITKEDFATFDYILCMDESNL 96
>pdb|2CWD|A Chain A, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|B Chain B, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|C Chain C, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|D Chain D, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
Length = 161
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
VLF+C N RSPM + +F+++L + + V+SAG G W VG+ MDPRA+ E G
Sbjct: 7 VLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEG 66
Query: 79 LDTEHVVREITKDDFYKFDYIIATDETDLS 108
HV R +T++D +D+I+ D +L
Sbjct: 67 AYFPHVARRLTREDVLAYDHILVMDRENLE 96
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 15/131 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK+VLF+C N RSP + + ++M+ ++ I++SA + VG+ D R+++ C+
Sbjct: 4 KKAVLFVCLGNICRSPACEGICRDMVG-----DKLIIDSAATSGFHVGQSPDTRSQKVCK 58
Query: 76 MYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
G+D ++ R+ITK DF KFD I A D++ LS + P + A++V F
Sbjct: 59 SNGVDISKQRARQITKADFSKFDVIAALDQSILSDINSMKPSNCRAKVV---------LF 109
Query: 135 QGPSDLPDPFF 145
P+ + DP++
Sbjct: 110 NPPNGVDDPYY 120
>pdb|1D1P|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
pdb|1D1P|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
Length = 160
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKERC 74
K SV F+C N+ RSPM +++FK + AN N + ++S G + VG+ D R C
Sbjct: 6 KISVAFICLGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSIC 65
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLG 126
+ +G+ H ++I F ++DYII DE++++ L+ P S A++ G
Sbjct: 66 KQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFG 117
>pdb|4ETM|A Chain A, Crystal Structure Of Yfkj From Bacillus Subtilis
pdb|4ETM|B Chain B, Crystal Structure Of Yfkj From Bacillus Subtilis
Length = 173
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMY 77
SVLF+C N RSPM +++F+++ A + +SAGIG W +G +E
Sbjct: 20 SVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRRE 79
Query: 78 GLDTEHVV-REITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQG 136
G+ + ++ R++++ D FDYIIA D ++ LR A +++ + +L + +
Sbjct: 80 GISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDL-- 137
Query: 137 PSDLPDPFFLKTKELINAL 155
+D+PDP++ E + L
Sbjct: 138 -ADVPDPYYTGNFEEVCQL 155
>pdb|1D2A|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
pdb|1D2A|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
Length = 160
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKERC 74
K SV F+ N+ RSPM +++FK + AN N + ++S G + VG+ D R C
Sbjct: 6 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSIC 65
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLG 126
+ +G+ H ++I F ++DYII DE++++ L+ P S A++ G
Sbjct: 66 KQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFG 117
>pdb|1D1Q|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
pdb|1D1Q|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
Length = 161
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKERC 74
K SV F+ N+ RSPM +++FK + AN N + ++S G + VG+ D R C
Sbjct: 7 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSIC 66
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLG 126
+ +G+ H ++I F ++DYII DE++++ L+ P S A++ G
Sbjct: 67 KQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFG 118
>pdb|3IDO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3IDO|B Chain B, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3ILY|A Chain A, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3ILY|B Chain B, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3JS5|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With Hepes In The Active Site.
High Resolution, Alternative Crystal Form With 1
Molecule In Asymmetric Unit
Length = 178
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERC 74
G +LF+C N RSP +++ K+++ + T ++I +SAG + G+ D R ++
Sbjct: 20 GSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVG 79
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+ G + + R + DF FDYI A D + L P ++ K+ F K
Sbjct: 80 KSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDRCPEQYKQKIFKMVDFCTTIK- 138
Query: 135 QGPSDLPDPFFLKTKELINALD 156
+++PDP++ K +D
Sbjct: 139 --TTEVPDPYYGGEKGFHRVID 158
>pdb|3JVI|A Chain A, Product State Mimic Crystal Structure Of Protein Tyrosine
Phosphatase From Entamoeba Histolytica
Length = 161
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERC 74
G +LF+C N RSP +++ K+++ + T ++I +SAG + G+ D R ++
Sbjct: 3 GSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVG 62
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+ G + + R + DF FDYI A D + L P ++ K+ F K
Sbjct: 63 KSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDRCPEQYKQKIFKMVDFCTTIK- 121
Query: 135 QGPSDLPDPFFLKTKELINALD 156
+++PDP++ K +D
Sbjct: 122 --TTEVPDPYYGGEKGFHRVID 141
>pdb|3ROF|A Chain A, Crystal Structure Of The S. Aureus Protein Tyrosine
Phosphatase Ptpa
Length = 158
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 13 FEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKE 72
F+G V F+C N RSPM +++ ++ L N ++ V S G G W++G+ ++
Sbjct: 3 FQGMVDVAFVCLGNICRSPMAEAIMRQRLKDRN-IHDIKVHSRGTGSWNLGEPPHEGTQK 61
Query: 73 RCEMYGLDTEHVVREI--TKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTR 130
+ + + ++ E+ DD FDYI+A D++++ ++ P+ QL KL F+
Sbjct: 62 ILNKHNIPFDGMISELFEATDD---FDYIVAMDQSNVDNIK-SINPNLKGQLFKLLEFSN 117
Query: 131 KAKFQGPSDLPDPFFLKTKE 150
+ SD+PDP++ E
Sbjct: 118 MEE----SDVPDPYYTNNFE 133
>pdb|2LUO|A Chain A, Nmr Solution Structure Of Apo-Mptpa
Length = 164
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
V F+C N RSPM + +F + L + V SAG G W VG D RA +G
Sbjct: 8 VTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHG 67
Query: 79 LDTEHVVREITKDDFYKFDYIIATDETDLSFLR---LEAPPDSSAQLVKLGTFTRKAKFQ 135
T+H ++ + D ++A D LR +EA A++ L +F ++
Sbjct: 68 YPTDHRAAQVGTEHLAA-DLLVALDRNHARLLRQLGVEA-----ARVRMLRSFDPRSGTH 121
Query: 136 GPSDLPDPFF 145
D+ DP++
Sbjct: 122 A-LDVEDPYY 130
>pdb|1U2P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Low
Molecular Protein Tyrosine Phosphatase (Mptpa) At 1.9a
Resolution
pdb|1U2Q|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Low
Molecular Weight Protein Tyrosine Phosphatase (Mptpa) At
2.5a Resolution With Glycerol In The Active Site
Length = 163
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
V F+C N RSPM + +F + L + V SAG G W VG D RA +G
Sbjct: 7 VTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHG 66
Query: 79 LDTEHVVREITKDDFYKFDYIIATDETDLSFLR---LEAPPDSSAQLVKLGTFTRKAKFQ 135
T+H ++ + D ++A D LR +EA A++ L +F ++
Sbjct: 67 YPTDHRAAQVGTEHLAA-DLLVALDRNHARLLRQLGVEA-----ARVRMLRSFDPRSGTH 120
Query: 136 GPSDLPDPFF 145
D+ DP++
Sbjct: 121 A-LDVEDPYY 129
>pdb|2GI4|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Campylobacter Jejuni
Length = 156
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
K +LF+C N RSPM + + K+++ AN E+ + SAG G+GM K + +
Sbjct: 2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEHDGEGMHYGTKNK--L 59
Query: 77 YGLDTEH---VVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAK 133
L+ EH +++T+ + D++I D ++ + L+ ++ +++K+ F+
Sbjct: 60 AQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNV-LKNFTNTQNKVLKITDFSPSLN 118
Query: 134 FQGPSDLPDPFF 145
+ ++PDP++
Sbjct: 119 YD---EVPDPWY 127
>pdb|2CD7|A Chain A, Staphylococcus Aureus Pi258 Arsenate Reductase (Arsc) H62q
Mutant
Length = 131
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+C N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFICTGNSCRSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIAT 102
+D + ++ +D K ++ T
Sbjct: 54 EVDIDISNQTSDLIDNDILKQSDLVVT 80
>pdb|1LJL|A Chain A, Wild Type Pi258 S. Aureus Arsenate Reductase
Length = 131
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+C N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFICTGNSCRSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIAT 102
+D + ++ +D K ++ T
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVVT 80
>pdb|1LK0|A Chain A, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
pdb|1LK0|B Chain B, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
Length = 131
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+C N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFICTGNSCRSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIAT 102
+D + ++ +D K ++ T
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVVT 80
>pdb|4EGS|A Chain A, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
pdb|4EGS|B Chain B, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
Length = 180
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGI----GWWDVGKGMDPRA 70
G VLF+C N RSPM + +F + +W +SAG+ G+ + ++
Sbjct: 33 GSMRVLFVCTGNTCRSPMAEGIFNAKSKALGK--DWEAKSAGVFAPEGFPASSEAVEVLK 90
Query: 71 KERCEMYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFT 129
KE YG+D ++H + + ++D D ++A + L + P+ + ++ + F
Sbjct: 91 KE----YGIDISDHRAKSLREEDLKGADLVLAMAFSHKRSL-VSQYPEYADKIFTIKEFV 145
Query: 130 R-KAKFQGPSDLPDPFFLKTKELINALDD 157
+ + P +P + KT E ++ L D
Sbjct: 146 GLEGDVEDPYGMPLEVYKKTAEELSGLID 174
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 119 SAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEVP 178
S++L+ G TR + Q S FFL +LI D++ R Y +G LD G+EV
Sbjct: 368 SSELIYSGELTRVTQPQAKSQ-QRXFFLFDHQLIYCKKDLLRRDVLYYKGRLDXDGLEVV 426
Query: 179 ETTTLKIVTVRTSPKIKSSTWNAWRLEMSS 208
+ K + S K NA+RL +
Sbjct: 427 DLEDGKDRDLHVSIK------NAFRLHRGA 450
>pdb|4ETN|A Chain A, Crystal Structure Of Ywle Mutant From Bacillus Subtilis
Length = 184
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKER 73
G ++F+C N RSPM ++LFK ++A + + V SAG+ GK P A E
Sbjct: 33 GSMDIIFVCTGNTSRSPMAEALFK---SIAEREGLNVNVRSAGVFASPNGKAT-PHAVEA 88
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIA 101
+ HV +T++ D ++A
Sbjct: 89 LFEKHIALNHVSSPLTEELMESADLVLA 116
>pdb|4ETI|A Chain A, Crystal Structure Of Ywle From Bacillus Subtilis
Length = 184
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKER 73
G ++F+C N RSPM ++LFK ++A + + V SAG+ GK P A E
Sbjct: 33 GSMDIIFVCTGNTCRSPMAEALFK---SIAEREGLNVNVRSAGVFASPNGKAT-PHAVEA 88
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIA 101
+ HV +T++ D ++A
Sbjct: 89 LFEKHIALNHVSSPLTEELMESADLVLA 116
>pdb|1RXE|A Chain A, Arsc Complexed With Mnb
pdb|1RXI|A Chain A, Pi258 Arsenate Reductase (Arsc) Triple Mutant C10sC15AC82S
Length = 131
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+ N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFISTGNSARSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIATDETD 106
+D + ++ +D K ++ T +D
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVVTLSSD 84
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 119 SAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEVP 178
S++L+ G TR + Q S FFL +LI D++ R Y +G LD G+EV
Sbjct: 331 SSELIYSGELTRVTQPQAKSQ-QRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVV 389
Query: 179 ETTTLKIVTVRTSPKIKSSTWNAWRLEMSS 208
+ K + S K NA+RL +
Sbjct: 390 DLEDGKDRDLHVSIK------NAFRLHRGA 413
>pdb|1Y1L|A Chain A, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|B Chain B, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|C Chain C, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|D Chain D, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
Length = 124
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
VLF+C N RS M ++LF M W ESAG+ + + +D K G
Sbjct: 2 VLFVCIHNTARSVMAEALFNAM------AKSWKAESAGV---EKAERVDETVKRLLAERG 52
Query: 79 LDTEHVVREITKDDFYKFDYIIATDE 104
L + R + + + FD I+ E
Sbjct: 53 LKAKEKPRTVDEVNLDDFDLIVTVCE 78
>pdb|1JF8|A Chain A, X-ray Structure Of Reduced C10s, C15a Arsenate Reductase
From Pi258
pdb|2FXI|A Chain A, Arsenate Reductase (Arsc From Pi258) C10sC15A DOUBLE
Mutant With Sulfate In Its Active Site
Length = 131
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+ N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFISTGNSARSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIAT 102
+D + ++ +D K ++ T
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVVT 80
>pdb|1ZGG|A Chain A, Solution Structure Of A Low Molecular Weight Protein
Tyrosine Phosphatase From Bacillus Subtilis
Length = 150
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKERCEMY 77
++F+C N RSPM ++LFK ++A + + V SAG+ GK P A E
Sbjct: 3 IIFVCTGNTCRSPMAEALFK---SIAEREGLNVNVRSAGVFASPNGKAT-PHAVEALFEK 58
Query: 78 GLDTEHVVREITKDDFYKFDYIIA 101
+ HV +T++ D ++A
Sbjct: 59 HIALNHVSSPLTEELMESADLVLA 82
>pdb|1LJU|A Chain A, X-Ray Structure Of C15a Arsenate Reductase From Pi258
Complexed With Arsenite
Length = 131
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+ N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFIXTGNSARSQMAEGWGKEILGEG-----WNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIAT 102
+D + ++ +D K ++ T
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVVT 80
>pdb|3R1M|A Chain A, Strucure Of Bifunctional Fructose 1,6-Bisphosphate
AldolasePHOSPHATASE (ALDOLASE FORM)
Length = 385
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 99 IIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDL-PDPFFLKTKELINALDD 157
++ + D R + PP +L+ LG + + GP+DL DP F +T+ L N + D
Sbjct: 273 LMPVSQRDAKATRFDGPP----RLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVAD 328
Query: 158 IIHRGYWYLRGFLDTLGIEVPETTTLKIVTVRTSPKIKSST 198
+ R ++ L+ +E TTL ++ + + K +
Sbjct: 329 YMRRHGPFMPHRLEPTEMEY---TTLPLILEKLKDRFKKES 366
>pdb|1UMG|A Chain A, Crystal Strucure Of Fructose-1,6-Bisphosphatase
Length = 362
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 99 IIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDL-PDPFFLKTKELINALDD 157
++ + D R + PP +L+ LG + + GP+DL DP F +T+ L N + D
Sbjct: 271 LMPVSQRDAKATRFDGPP----RLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVAD 326
Query: 158 IIHR 161
+ R
Sbjct: 327 YMRR 330
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 146 LKTKELINALDDIIHRGYWYLRGFLDTLGIEVPETTTL-KIVTVRTSPKIKSSTWNAWRL 204
L ++L + DD+ + + L GF+D + EV T+ L + +T++T P I S
Sbjct: 18 LTAQQLFASADDLTYNDFLILPGFIDFIADEVDLTSALTRKITLKT-PLISSPMDTVTEA 76
Query: 205 EMSSLQALVSRTKF 218
+M+ AL+ F
Sbjct: 77 DMAIAMALMGGIGF 90
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate.
pdb|2WJA|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate
Length = 168
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMY 77
S+L +C N RSP+ + L + +L + SAG+G V D A E
Sbjct: 28 SILVICTGNICRSPIGERLLRRLLPSKK------INSAGVGAL-VDHAADESAIRVAEKN 80
Query: 78 GLDTE-HVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQG 136
GL + H + T ++D ++ + + L + A P++ + + G + +
Sbjct: 81 GLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQISRIA-PEARGKTMLFGHWLDSKEIPD 139
Query: 137 PSDLPDPFFLKTKELI 152
P + D F +L+
Sbjct: 140 PYRMSDEAFDSVYQLL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,845,137
Number of Sequences: 62578
Number of extensions: 273374
Number of successful extensions: 716
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 38
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)