Query psy10839
Match_columns 232
No_of_seqs 175 out of 1161
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:46:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3217|consensus 100.0 2.2E-44 4.7E-49 289.2 13.3 154 12-173 2-158 (159)
2 PRK11391 etp phosphotyrosine-p 100.0 7.3E-43 1.6E-47 284.2 14.0 140 17-174 3-143 (144)
3 PRK10126 tyrosine phosphatase; 100.0 2E-42 4.4E-47 282.1 14.9 141 17-175 3-144 (147)
4 COG0394 Wzb Protein-tyrosine-p 100.0 5.4E-42 1.2E-46 278.0 13.6 136 16-173 2-138 (139)
5 PF01451 LMWPc: Low molecular 100.0 1.4E-41 3.1E-46 272.4 10.2 137 19-170 1-138 (138)
6 smart00226 LMWPc Low molecular 100.0 1.6E-39 3.4E-44 261.4 12.7 139 19-171 1-139 (140)
7 cd00115 LMWPc Substituted upda 100.0 2.3E-39 4.9E-44 261.3 12.5 139 17-170 1-140 (141)
8 PRK13530 arsenate reductase; P 100.0 6.9E-37 1.5E-41 246.1 13.3 130 14-172 1-131 (133)
9 TIGR02689 ars_reduc_gluta arse 100.0 1.2E-36 2.6E-41 242.0 12.7 125 17-170 1-126 (126)
10 TIGR02691 arsC_pI258_fam arsen 100.0 1.6E-34 3.5E-39 231.1 10.6 122 19-169 1-129 (129)
11 COG4551 Predicted protein tyro 99.5 1.4E-15 3E-20 114.2 0.7 88 16-145 1-88 (109)
12 KOG2424|consensus 96.3 0.059 1.3E-06 45.7 10.3 92 14-114 3-123 (195)
13 COG3414 SgaB Phosphotransferas 95.5 0.16 3.4E-06 38.6 9.0 43 16-58 1-43 (93)
14 COG5211 SSU72 RNA polymerase I 94.4 0.38 8.2E-06 40.2 8.9 91 13-112 3-122 (197)
15 PF04722 Ssu72: Ssu72-like pro 93.7 0.1 2.2E-06 44.7 4.5 90 16-113 1-120 (195)
16 cd05569 PTS_IIB_fructose PTS_I 93.6 0.28 6.1E-06 37.1 6.3 63 19-107 3-65 (96)
17 PRK09590 celB cellobiose phosp 93.2 0.2 4.3E-06 38.7 5.0 40 16-58 1-40 (104)
18 PRK09548 PTS system ascorbate- 92.2 0.44 9.5E-06 47.4 7.1 43 15-59 505-547 (602)
19 TIGR00853 pts-lac PTS system, 91.5 0.48 1E-05 35.8 5.2 43 14-59 1-43 (95)
20 cd05564 PTS_IIB_chitobiose_lic 91.4 0.4 8.7E-06 36.2 4.7 39 18-59 1-39 (96)
21 PRK10310 PTS system galactitol 91.2 0.55 1.2E-05 35.3 5.2 39 17-57 3-41 (94)
22 PF02302 PTS_IIB: PTS system, 91.0 0.67 1.4E-05 33.7 5.5 30 18-47 1-30 (90)
23 PRK10499 PTS system N,N'-diace 90.3 0.98 2.1E-05 34.8 6.0 41 14-57 1-41 (106)
24 TIGR00829 FRU PTS system, fruc 88.3 1.1 2.4E-05 33.2 4.8 60 21-106 4-63 (85)
25 cd05567 PTS_IIB_mannitol PTS_I 86.2 2.2 4.8E-05 31.2 5.4 40 17-58 1-40 (87)
26 PRK10427 putative PTS system f 86.0 2.4 5.2E-05 33.2 5.8 64 17-106 3-68 (114)
27 cd02980 TRX_Fd_family Thioredo 84.7 2.3 5E-05 29.9 4.7 41 19-59 2-45 (77)
28 cd05565 PTS_IIB_lactose PTS_II 84.0 2.7 5.9E-05 32.1 5.1 39 17-58 1-39 (99)
29 COG1445 FrwB Phosphotransferas 83.5 2 4.2E-05 34.3 4.2 60 22-107 9-68 (122)
30 PRK05647 purN phosphoribosylgl 82.5 2.8 6.1E-05 35.8 5.2 77 16-104 1-89 (200)
31 PRK11404 putative PTS system 81.9 3.7 8.1E-05 39.9 6.4 63 16-104 3-67 (482)
32 cd00133 PTS_IIB PTS_IIB: subun 81.9 3.4 7.4E-05 28.6 4.7 30 18-47 1-30 (84)
33 cd01443 Cdc25_Acr2p Cdc25 enzy 79.2 3.8 8.3E-05 31.0 4.5 46 15-60 65-111 (113)
34 cd05568 PTS_IIB_bgl_like PTS_I 78.7 6.4 0.00014 27.9 5.3 25 17-41 1-25 (85)
35 cd05566 PTS_IIB_galactitol PTS 78.5 5.7 0.00012 28.8 5.1 38 17-56 1-38 (89)
36 TIGR03865 PQQ_CXXCW PQQ-depend 78.2 2.7 5.9E-05 34.6 3.6 41 15-60 115-155 (162)
37 PRK10712 PTS system fructose-s 77.6 6 0.00013 39.3 6.3 67 15-107 102-170 (563)
38 TIGR00639 PurN phosphoribosylg 76.2 6.3 0.00014 33.4 5.4 77 17-105 1-89 (190)
39 COG2213 MtlA Phosphotransferas 75.3 4.7 0.0001 38.3 4.7 42 16-58 378-419 (472)
40 PRK00994 F420-dependent methyl 73.6 11 0.00023 33.8 6.1 40 16-59 2-41 (277)
41 PRK06718 precorrin-2 dehydroge 72.3 20 0.00042 30.6 7.5 76 11-105 5-80 (202)
42 PRK14573 bifunctional D-alanyl 72.2 8.1 0.00018 39.6 5.9 26 13-38 1-26 (809)
43 cd00158 RHOD Rhodanese Homolog 71.2 7.5 0.00016 27.0 4.0 40 15-60 49-88 (89)
44 cd03064 TRX_Fd_NuoE TRX-like [ 71.1 9.1 0.0002 27.3 4.5 42 18-59 2-50 (80)
45 cd05563 PTS_IIB_ascorbate PTS_ 70.9 9.5 0.0002 27.4 4.6 30 18-47 1-30 (86)
46 KOG1794|consensus 70.1 8.6 0.00019 35.4 4.9 75 136-223 224-298 (336)
47 cd01518 RHOD_YceA Member of th 69.6 5.9 0.00013 29.2 3.3 40 15-60 60-99 (101)
48 PF09652 Cas_VVA1548: Putative 68.7 4.7 0.0001 30.7 2.5 41 67-107 6-46 (93)
49 KOG1602|consensus 66.6 4.8 0.0001 36.1 2.5 47 16-81 37-83 (271)
50 PLN02160 thiosulfate sulfurtra 66.2 6.3 0.00014 31.3 3.0 40 15-60 80-119 (136)
51 cd01519 RHOD_HSP67B2 Member of 65.0 7.6 0.00016 28.5 3.1 39 16-60 66-104 (106)
52 PRK10264 hydrogenase 1 maturat 63.9 12 0.00027 31.9 4.5 46 14-59 1-48 (195)
53 PRK06988 putative formyltransf 63.7 28 0.00061 31.7 7.1 78 16-105 2-87 (312)
54 PRK10474 putative PTS system f 63.6 9.8 0.00021 28.2 3.4 49 32-106 1-49 (88)
55 cd01529 4RHOD_Repeats Member o 63.6 8.4 0.00018 28.0 3.1 40 15-60 55-94 (96)
56 smart00450 RHOD Rhodanese Homo 63.2 10 0.00022 26.6 3.4 40 15-60 55-94 (100)
57 cd01523 RHOD_Lact_B Member of 62.0 10 0.00022 27.8 3.3 39 15-60 60-98 (100)
58 TIGR02981 phageshock_pspE phag 60.5 10 0.00022 28.7 3.1 39 15-60 57-95 (101)
59 PRK15083 PTS system mannitol-s 60.4 19 0.00041 36.2 5.7 41 14-55 376-416 (639)
60 PRK10466 hybD hydrogenase 2 ma 59.9 14 0.0003 30.4 4.0 43 17-59 1-45 (164)
61 TIGR02371 ala_DH_arch alanine 59.3 15 0.00033 33.5 4.6 77 15-106 127-203 (325)
62 COG1927 Mtd Coenzyme F420-depe 58.4 25 0.00054 31.0 5.4 48 17-73 3-50 (277)
63 cd01531 Acr2p Eukaryotic arsen 58.0 19 0.00041 27.0 4.3 45 15-60 61-109 (113)
64 PRK09765 PTS system 2-O-a-mann 56.7 19 0.00042 36.1 5.1 64 17-106 164-229 (631)
65 KOG0409|consensus 56.4 34 0.00073 31.7 6.1 80 3-105 10-101 (327)
66 PRK06719 precorrin-2 dehydroge 56.2 48 0.001 27.0 6.6 73 11-105 8-80 (157)
67 TIGR01244 conserved hypothetic 56.2 25 0.00053 27.9 4.8 48 15-85 85-133 (135)
68 TIGR00282 metallophosphoestera 55.8 43 0.00093 30.0 6.7 60 17-81 1-62 (266)
69 cd01533 4RHOD_Repeat_2 Member 55.4 14 0.0003 27.6 3.1 40 16-60 66-105 (109)
70 PLN02683 pyruvate dehydrogenas 55.4 31 0.00068 32.1 6.0 39 69-107 245-291 (356)
71 cd01530 Cdc25 Cdc25 phosphatas 55.1 25 0.00054 27.2 4.5 45 15-60 67-119 (121)
72 COG0051 RpsJ Ribosomal protein 54.9 14 0.00031 28.7 3.0 49 152-203 18-66 (104)
73 cd01444 GlpE_ST GlpE sulfurtra 54.3 13 0.00028 26.6 2.7 40 15-60 55-94 (96)
74 cd01522 RHOD_1 Member of the R 53.3 19 0.00041 27.5 3.6 40 15-60 63-102 (117)
75 TIGR01470 cysG_Nterm siroheme 53.0 43 0.00094 28.5 6.1 76 11-105 4-79 (205)
76 COG1440 CelA Phosphotransferas 52.7 32 0.00068 26.6 4.6 38 16-54 1-38 (102)
77 cd01528 RHOD_2 Member of the R 52.5 17 0.00036 26.7 3.1 39 16-60 58-96 (101)
78 PF01921 tRNA-synt_1f: tRNA sy 52.2 35 0.00077 32.0 5.8 98 32-148 7-105 (360)
79 PRK00005 fmt methionyl-tRNA fo 52.2 58 0.0013 29.5 7.1 81 17-105 1-88 (309)
80 cd01534 4RHOD_Repeat_3 Member 51.8 17 0.00037 26.4 3.0 38 16-60 56-93 (95)
81 cd01521 RHOD_PspE2 Member of t 51.3 21 0.00045 26.7 3.5 40 15-60 63-103 (110)
82 COG0345 ProC Pyrroline-5-carbo 51.2 1.2E+02 0.0026 27.3 8.8 77 16-110 1-78 (266)
83 TIGR02620 cas_VVA1548 putative 50.6 15 0.00032 28.0 2.4 41 67-107 6-46 (93)
84 PRK07261 topology modulation p 49.7 40 0.00086 27.6 5.2 89 17-111 1-94 (171)
85 PRK01906 tetraacyldisaccharide 49.3 27 0.00058 32.4 4.5 95 15-112 52-166 (338)
86 PRK08118 topology modulation p 48.9 30 0.00066 28.3 4.3 82 16-106 1-89 (167)
87 cd01448 TST_Repeat_1 Thiosulfa 48.3 22 0.00047 26.9 3.2 41 15-60 78-118 (122)
88 PRK10222 PTS system L-ascorbat 48.2 18 0.00039 26.6 2.6 36 69-104 6-43 (85)
89 PRK12490 6-phosphogluconate de 47.6 1.1E+02 0.0025 27.2 8.2 88 17-124 1-91 (299)
90 PRK08300 acetaldehyde dehydrog 47.3 58 0.0013 29.8 6.3 78 13-105 1-80 (302)
91 COG0223 Fmt Methionyl-tRNA for 47.0 1.1E+02 0.0024 28.1 8.0 84 16-106 1-90 (307)
92 COG0378 HypB Ni2+-binding GTPa 46.9 25 0.00054 30.4 3.6 83 15-103 63-151 (202)
93 TIGR01958 nuoE_fam NADH-quinon 46.8 40 0.00088 27.2 4.7 30 17-46 68-97 (148)
94 COG2084 MmsB 3-hydroxyisobutyr 46.2 53 0.0011 29.9 5.8 66 17-105 1-67 (286)
95 PF01993 MTD: methylene-5,6,7, 45.8 13 0.00028 33.3 1.7 39 18-60 3-41 (276)
96 PRK02006 murD UDP-N-acetylmura 45.6 49 0.0011 31.8 5.8 22 15-37 6-27 (498)
97 TIGR00557 pdxA 4-hydroxythreon 44.3 61 0.0013 29.9 6.0 90 15-106 151-263 (320)
98 COG1660 Predicted P-loop-conta 43.8 1.2E+02 0.0027 27.5 7.6 31 152-185 218-248 (286)
99 cd01449 TST_Repeat_2 Thiosulfa 43.1 25 0.00055 26.3 2.8 40 15-60 77-116 (118)
100 cd01524 RHOD_Pyr_redox Member 42.9 34 0.00073 24.5 3.3 39 15-60 50-88 (90)
101 PF00581 Rhodanese: Rhodanese- 42.5 43 0.00093 24.2 4.0 44 15-60 66-110 (113)
102 cd01532 4RHOD_Repeat_1 Member 42.0 33 0.00071 24.8 3.2 40 16-60 50-90 (92)
103 PRK07539 NADH dehydrogenase su 41.7 55 0.0012 26.6 4.8 30 17-46 74-103 (154)
104 PRK03743 pdxA 4-hydroxythreoni 41.6 74 0.0016 29.6 6.1 89 16-106 160-270 (332)
105 PRK05320 rhodanese superfamily 41.6 27 0.0006 31.0 3.2 40 15-60 174-213 (257)
106 PF02606 LpxK: Tetraacyldisacc 41.3 39 0.00085 31.1 4.3 94 14-111 30-144 (326)
107 COG0680 HyaD Ni,Fe-hydrogenase 41.2 34 0.00074 28.3 3.5 40 16-59 1-46 (160)
108 cd01525 RHOD_Kc Member of the 41.2 38 0.00083 24.7 3.5 39 16-60 65-103 (105)
109 PRK00421 murC UDP-N-acetylmura 41.1 75 0.0016 30.1 6.3 23 15-37 6-28 (461)
110 PRK05948 precorrin-2 methyltra 41.0 1.1E+02 0.0023 26.8 6.8 84 16-112 92-188 (238)
111 PF01257 2Fe-2S_thioredx: Thio 40.5 37 0.0008 27.3 3.5 42 17-58 65-113 (145)
112 PRK15461 NADH-dependent gamma- 40.4 75 0.0016 28.3 5.9 67 17-106 2-68 (296)
113 cd01526 RHOD_ThiF Member of th 40.4 26 0.00057 26.7 2.6 41 15-60 71-111 (122)
114 PRK01415 hypothetical protein; 39.7 29 0.00062 30.9 3.0 40 15-60 170-209 (247)
115 TIGR00670 asp_carb_tr aspartat 39.6 67 0.0014 29.2 5.4 70 15-102 149-223 (301)
116 PRK05562 precorrin-2 dehydroge 39.3 1.4E+02 0.003 26.2 7.1 76 11-105 20-95 (223)
117 PRK08335 translation initiatio 38.8 43 0.00092 30.3 4.0 77 16-104 110-186 (275)
118 TIGR00142 hycI hydrogenase mat 37.8 51 0.0011 26.4 4.0 36 19-59 1-42 (146)
119 PRK10287 thiosulfate:cyanide s 37.5 45 0.00097 25.3 3.4 38 16-60 60-97 (104)
120 PF02817 E3_binding: e3 bindin 37.5 26 0.00057 22.1 1.8 16 66-81 5-20 (39)
121 PRK01438 murD UDP-N-acetylmura 36.9 86 0.0019 29.8 6.0 70 15-103 15-86 (480)
122 PRK07579 hypothetical protein; 36.6 75 0.0016 28.3 5.1 75 16-105 1-75 (245)
123 PRK00211 sulfur relay protein 36.3 1.3E+02 0.0028 23.4 5.9 65 16-80 1-74 (119)
124 TIGR00130 frhD coenzyme F420-r 36.3 65 0.0014 26.0 4.4 44 16-59 2-48 (153)
125 TIGR00511 ribulose_e2b2 ribose 35.9 44 0.00096 30.3 3.7 77 16-104 116-192 (301)
126 TIGR01082 murC UDP-N-acetylmur 35.7 73 0.0016 30.1 5.2 21 18-38 1-21 (448)
127 cd01020 TroA_b Metal binding p 35.7 1.8E+02 0.0039 25.5 7.4 23 90-112 47-69 (264)
128 PRK06407 ornithine cyclodeamin 35.7 33 0.00073 31.0 2.8 102 14-130 115-216 (301)
129 TIGR00460 fmt methionyl-tRNA f 35.6 1.3E+02 0.0029 27.2 6.7 79 17-105 1-88 (313)
130 cd03083 TRX_Fd_NuoE_hoxF TRX-l 35.5 77 0.0017 22.7 4.2 43 17-59 1-50 (80)
131 PRK06027 purU formyltetrahydro 35.0 65 0.0014 29.0 4.6 77 15-105 88-175 (286)
132 PRK12491 pyrroline-5-carboxyla 34.9 1.4E+02 0.003 26.5 6.7 73 17-110 3-79 (272)
133 KOG2004|consensus 34.9 18 0.00038 37.3 1.0 12 17-28 553-564 (906)
134 PRK08535 translation initiatio 34.3 47 0.001 30.3 3.6 76 17-104 122-197 (310)
135 cd06068 H2MP_like-1 Putative [ 34.2 29 0.00064 27.7 2.0 40 20-59 1-41 (144)
136 PLN02527 aspartate carbamoyltr 34.2 95 0.0021 28.3 5.6 70 16-102 151-225 (306)
137 cd03082 TRX_Fd_NuoE_W_FDH_beta 34.1 70 0.0015 22.6 3.7 39 18-57 2-40 (72)
138 PRK08192 aspartate carbamoyltr 34.0 92 0.002 28.9 5.5 73 15-102 158-233 (338)
139 PF13587 DJ-1_PfpI_N: N-termin 33.5 27 0.00057 22.0 1.3 10 17-26 1-10 (38)
140 COG4226 HicB Predicted nucleas 33.4 84 0.0018 24.6 4.3 72 137-215 29-102 (111)
141 cd06062 H2MP_MemB-H2up Endopep 33.3 56 0.0012 26.1 3.5 41 19-59 1-43 (146)
142 PLN02688 pyrroline-5-carboxyla 33.3 1.2E+02 0.0025 26.3 5.8 69 17-105 1-71 (266)
143 TIGR00682 lpxK tetraacyldisacc 32.9 45 0.00098 30.5 3.2 41 15-58 24-69 (311)
144 cd01527 RHOD_YgaP Member of th 32.8 52 0.0011 23.8 3.0 39 16-60 54-92 (99)
145 PRK07634 pyrroline-5-carboxyla 31.9 36 0.00077 29.0 2.3 25 13-38 1-25 (245)
146 cd03081 TRX_Fd_NuoE_FDH_gamma 31.7 1E+02 0.0022 22.1 4.3 41 18-58 2-49 (80)
147 KOG4132|consensus 31.7 96 0.0021 27.6 4.8 53 16-78 133-185 (260)
148 PF10087 DUF2325: Uncharacteri 31.3 33 0.0007 25.4 1.7 39 66-105 11-58 (97)
149 PRK08125 bifunctional UDP-gluc 31.2 1.4E+02 0.003 29.9 6.6 77 17-105 1-85 (660)
150 PRK11891 aspartate carbamoyltr 31.1 1.1E+02 0.0025 29.4 5.7 71 16-103 241-316 (429)
151 PF03446 NAD_binding_2: NAD bi 31.1 1.8E+02 0.0039 23.3 6.3 86 16-124 1-91 (163)
152 cd07382 MPP_DR1281 Deinococcus 30.8 1.7E+02 0.0037 25.9 6.5 59 18-81 1-61 (255)
153 PRK00652 lpxK tetraacyldisacch 30.7 53 0.0011 30.3 3.3 39 17-58 47-90 (325)
154 cd06063 H2MP_Cyano-H2up This g 30.5 36 0.00079 27.2 2.0 40 19-59 1-42 (146)
155 COG4822 CbiK Cobalamin biosynt 30.4 2.4E+02 0.0053 25.1 7.1 58 17-81 138-195 (265)
156 PF04405 ScdA_N: Domain of Unk 30.3 44 0.00096 22.8 2.1 16 66-81 11-26 (56)
157 PRK09212 pyruvate dehydrogenas 30.0 79 0.0017 28.9 4.3 38 69-106 218-263 (327)
158 cd01520 RHOD_YbbB Member of th 30.0 66 0.0014 24.8 3.3 40 15-60 85-124 (128)
159 cd01535 4RHOD_Repeat_4 Member 29.4 49 0.0011 26.5 2.6 39 16-60 49-87 (145)
160 PF07905 PucR: Purine cataboli 29.3 1.8E+02 0.0038 22.4 5.7 57 18-81 43-102 (123)
161 PF11965 DUF3479: Domain of un 29.1 1.3E+02 0.0028 25.2 5.0 39 17-56 1-39 (164)
162 CHL00144 odpB pyruvate dehydro 29.1 1.1E+02 0.0025 27.9 5.2 39 68-106 217-263 (327)
163 TIGR00524 eIF-2B_rel eIF-2B al 29.1 61 0.0013 29.6 3.4 82 17-104 120-206 (303)
164 COG0206 FtsZ Cell division GTP 29.0 2.3E+02 0.005 26.4 7.2 93 48-176 96-203 (338)
165 TIGR00512 salvage_mtnA S-methy 28.8 1.1E+02 0.0024 28.4 5.0 81 18-104 149-234 (331)
166 PRK03371 pdxA 4-hydroxythreoni 27.5 73 0.0016 29.5 3.6 90 15-106 158-269 (326)
167 PF13241 NAD_binding_7: Putati 27.4 1.4E+02 0.0031 22.2 4.7 67 12-105 3-70 (103)
168 PRK05312 pdxA 4-hydroxythreoni 27.1 2.6E+02 0.0057 26.0 7.2 89 16-106 164-275 (336)
169 KOG2882|consensus 27.0 1.4E+02 0.0031 27.4 5.3 79 5-88 44-136 (306)
170 TIGR01081 mpl UDP-N-acetylmura 27.0 1.4E+02 0.0029 28.3 5.5 21 18-38 1-21 (448)
171 PRK13010 purU formyltetrahydro 26.5 2.9E+02 0.0062 25.0 7.3 76 16-105 93-179 (289)
172 TIGR03167 tRNA_sel_U_synt tRNA 26.4 78 0.0017 29.0 3.6 38 15-58 73-110 (311)
173 PRK13011 formyltetrahydrofolat 26.4 1.5E+02 0.0032 26.8 5.3 76 15-104 88-174 (286)
174 PRK08618 ornithine cyclodeamin 25.8 91 0.002 28.3 4.0 98 15-130 126-225 (325)
175 PRK13940 glutamyl-tRNA reducta 25.6 4.8E+02 0.01 24.8 8.9 72 15-107 180-254 (414)
176 PRK00162 glpE thiosulfate sulf 25.3 63 0.0014 23.9 2.4 40 15-60 57-96 (108)
177 cd03062 TRX_Fd_Sucrase TRX-lik 25.2 1.7E+02 0.0036 21.8 4.7 39 18-57 2-46 (97)
178 TIGR01046 S10_Arc_S20_Euk ribo 25.0 47 0.001 25.3 1.6 32 173-204 33-65 (99)
179 PRK07589 ornithine cyclodeamin 24.7 1.3E+02 0.0028 28.0 4.7 100 15-130 128-229 (346)
180 PRK00232 pdxA 4-hydroxythreoni 24.6 88 0.0019 29.1 3.6 90 15-106 159-270 (332)
181 PLN02285 methionyl-tRNA formyl 24.5 2.8E+02 0.0062 25.5 7.0 83 15-105 5-103 (334)
182 PRK00023 cmk cytidylate kinase 24.4 1.3E+02 0.0028 25.9 4.4 53 13-81 1-53 (225)
183 PRK06522 2-dehydropantoate 2-r 24.4 3.3E+02 0.0072 23.6 7.2 70 17-105 1-76 (304)
184 PTZ00039 40S ribosomal protein 24.3 1.2E+02 0.0026 23.8 3.8 43 162-204 31-81 (115)
185 PRK04284 ornithine carbamoyltr 24.1 1.1E+02 0.0023 28.3 4.1 72 15-102 154-231 (332)
186 PRK14618 NAD(P)H-dependent gly 23.9 4.5E+02 0.0097 23.5 8.1 15 92-106 71-85 (328)
187 PRK11559 garR tartronate semia 23.9 2.2E+02 0.0047 25.0 6.0 66 17-105 3-68 (296)
188 PRK00142 putative rhodanese-re 23.8 77 0.0017 29.0 3.1 40 15-60 170-209 (314)
189 PLN02828 formyltetrahydrofolat 23.5 1.8E+02 0.0038 26.2 5.2 82 13-104 67-156 (268)
190 cd01447 Polysulfide_ST Polysul 23.5 63 0.0014 23.2 2.0 40 15-60 60-99 (103)
191 PRK12271 rps10p 30S ribosomal 23.4 1.6E+02 0.0034 22.6 4.2 43 162-204 16-66 (102)
192 PRK01909 pdxA 4-hydroxythreoni 23.4 92 0.002 28.9 3.5 88 17-106 156-266 (329)
193 PRK10637 cysG siroheme synthas 23.3 2.8E+02 0.0062 26.5 7.0 76 11-105 7-82 (457)
194 PRK06823 ornithine cyclodeamin 23.1 1.7E+02 0.0036 26.7 5.1 75 15-106 127-203 (315)
195 COG5552 Uncharacterized conser 22.9 1.3E+02 0.0028 22.1 3.4 38 138-179 32-69 (88)
196 TIGR00361 ComEC_Rec2 DNA inter 22.8 1.3E+02 0.0029 30.2 4.8 56 17-81 600-655 (662)
197 KOG0235|consensus 22.7 65 0.0014 28.1 2.2 18 17-34 157-174 (214)
198 PRK00131 aroK shikimate kinase 22.0 1.4E+02 0.003 23.4 3.9 28 13-40 1-28 (175)
199 PRK08762 molybdopterin biosynt 21.5 1.1E+02 0.0024 28.4 3.6 40 15-60 56-95 (376)
200 PF10686 DUF2493: Protein of u 21.5 3E+02 0.0066 19.4 5.9 61 17-85 4-65 (71)
201 PF03668 ATP_bind_2: P-loop AT 21.4 4E+02 0.0088 24.2 7.1 31 152-185 217-247 (284)
202 TIGR01856 hisJ_fam histidinol 21.4 1.2E+02 0.0027 26.3 3.8 54 33-89 187-245 (253)
203 PRK03515 ornithine carbamoyltr 20.8 1.2E+02 0.0027 28.0 3.8 70 15-102 155-232 (336)
204 TIGR00365 monothiol glutaredox 20.7 2.2E+02 0.0047 21.1 4.5 41 36-81 4-44 (97)
205 cd04935 ACT_AKiii-DAPDC_1 ACT 20.4 1.5E+02 0.0032 21.0 3.4 47 50-106 4-50 (75)
206 KOG0820|consensus 20.3 1.7E+02 0.0037 26.9 4.4 118 65-194 87-215 (315)
207 PRK11493 sseA 3-mercaptopyruva 20.2 1.2E+02 0.0025 26.9 3.4 40 16-60 87-126 (281)
208 COG1692 Calcineurin-like phosp 20.2 3.9E+02 0.0085 24.1 6.6 79 17-100 1-86 (266)
209 PRK11539 ComEC family competen 20.1 1.5E+02 0.0033 30.4 4.6 56 17-81 658-713 (755)
210 PRK11544 hycI hydrogenase 3 ma 20.1 1.2E+02 0.0027 24.5 3.3 41 17-59 1-43 (156)
No 1
>KOG3217|consensus
Probab=100.00 E-value=2.2e-44 Score=289.16 Aligned_cols=154 Identities=31% Similarity=0.596 Sum_probs=145.4
Q ss_pred cccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCcc
Q psy10839 12 LFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKD 91 (232)
Q Consensus 12 ~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~ 91 (232)
..|.+.+|||||.||||||||||++|+++++++|+...|.|+||||+.||+|++|||+++.+|++|||.+.|.+|+++.+
T Consensus 2 ~e~~~~svlFvclGNiCRSP~AEaVFr~~v~K~~l~~~~~iDSagt~~yh~G~~PD~R~~s~lK~hGI~~~H~aRqit~~ 81 (159)
T KOG3217|consen 2 AEQATKSVLFVCLGNICRSPIAEAVFRDLVKKRNLSEEWHIDSAGTSGYHTGRSPDPRTLSILKKHGIKIDHLARQITTS 81 (159)
T ss_pred CcccceEEEEEEecccccCHHHHHHHHHHHHHcCcceeeeeccccccccccCCCCChHHHHHHHHcCCcchhhcccccHh
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEecCCcHHHHHH---hCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy10839 92 DFYKFDYIIATDETDLSFLRL---EAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRG 168 (232)
Q Consensus 92 dl~~aDlII~Md~~~~~~L~~---~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ 168 (232)
|+.+||||++||++|.++|.+ ..|....+||.||++|+.. ....|+||||++... |+.+ |+||.+.|++
T Consensus 82 DF~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV~Llgsy~~~----~~~~I~DPyYg~~~~-Fe~v---y~qi~~~c~~ 153 (159)
T KOG3217|consen 82 DFREFDYILAMDESNLRDLLRKASNQPKGSKAKVLLLGSYDKN----GQKIIEDPYYGGDSK-FETV---YQQIVDCCKA 153 (159)
T ss_pred HhhhcceeEEecHHHHHHHHHHhccCCCCcceEEEEeeccCCC----CCeecCCCCCCcccc-HHHH---HHHHHHHHHH
Confidence 999999999999999999988 5676678999999999986 378899999999999 9999 9999999999
Q ss_pred HHHHH
Q psy10839 169 FLDTL 173 (232)
Q Consensus 169 ll~~L 173 (232)
|+...
T Consensus 154 ~l~s~ 158 (159)
T KOG3217|consen 154 FLKSI 158 (159)
T ss_pred HHHhc
Confidence 98753
No 2
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=100.00 E-value=7.3e-43 Score=284.25 Aligned_cols=140 Identities=21% Similarity=0.332 Sum_probs=131.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYK 95 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~ 95 (232)
++|||||+||+|||||||++|++++ .+++|+|||+.++ .|.|+||.++++|+++|||+ +|+|++||++++.+
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~------~~~~v~SaG~~~~-~g~~~~~~a~~~l~~~Gid~~~h~s~~lt~~~~~~ 75 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL------PGVKVKSAGVHGL-VKHPADATAADVAANHGVSLEGHAGRKLTAEMARN 75 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc------CCeEEEcccccCC-CCCCCCHHHHHHHHHcCCCcCCCccCcCCHHHHhh
Confidence 6999999999999999999999987 3599999999987 79999999999999999999 79999999999999
Q ss_pred ccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10839 96 FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLG 174 (232)
Q Consensus 96 aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~ 174 (232)
||+||+||.+|+..|.+.+|. ..+|+++|++|.+ +|+||||||++.++ |+++ +++|+++|..|+++|.
T Consensus 76 ~DlIl~M~~~~~~~l~~~~p~-~~~k~~~l~~~~~------~~~I~DPy~~~~~~-f~~~---~~~I~~~i~~ll~~l~ 143 (144)
T PRK11391 76 YDLILAMESEHIAQVTAIAPE-VRGKTMLFGQWLE------QKEIPDPYRKSQDA-FEHV---YGMLERASQEWAKRLS 143 (144)
T ss_pred CCEEEECCHHHHHHHHHHCCC-CcCeEEehhHhCC------CCCCCCCccCCHHH-HHHH---HHHHHHHHHHHHHHhh
Confidence 999999999999999999997 5789999999975 48999999999999 9999 9999999999998764
No 3
>PRK10126 tyrosine phosphatase; Provisional
Probab=100.00 E-value=2e-42 Score=282.10 Aligned_cols=141 Identities=26% Similarity=0.419 Sum_probs=131.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYK 95 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~ 95 (232)
++|||||+||+|||||||++|++++ .+++|+|||+.++ .|.|+||.|+++|+++|||+ +|+|++|+++++++
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~------~~~~v~SAG~~~~-~g~~~~~~a~~~l~~~Gid~~~h~sr~lt~~~~~~ 75 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH------PELKVESAGLGAL-VGKGADPTAISVAAEHQLSLEGHCARQISRRLCRN 75 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc------CCeEEEeeeccCC-CCCCCCHHHHHHHHHcCCCcCCCccccCCHHHhcc
Confidence 7999999999999999999999997 3599999999986 79999999999999999999 79999999999999
Q ss_pred ccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10839 96 FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGI 175 (232)
Q Consensus 96 aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~ 175 (232)
||+||+||..|++.+.+.+|. ..+|++++++|.+ ..+|+||||++.+. |+++ +++|+++|..|++.|..
T Consensus 76 ~DlIl~Md~~~~~~l~~~~p~-~~~k~~~l~~~~~------~~~I~DP~~~~~~~-f~~~---~~~I~~~i~~l~~~l~~ 144 (147)
T PRK10126 76 YDLILTMEKRHIERLCEMAPE-MRGKVMLFGHWDN------ECEIPDPYRKSREA-FEAV---YTLLERSARQWAQALNA 144 (147)
T ss_pred CCEEEECCHHHHHHHHHhcCc-ccCcEEehhhhCC------CCCCCCCCCCCHHH-HHHH---HHHHHHHHHHHHHHHHh
Confidence 999999999999999999996 5789999998864 25899999999999 9999 99999999999998764
No 4
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-42 Score=277.96 Aligned_cols=136 Identities=32% Similarity=0.477 Sum_probs=123.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFY 94 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~ 94 (232)
+++|||||+||+|||||||+|||+++ +++|+|+||||.. +.|+++||+++++|+|+|||+ +|+|+++++++++
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~-----~~~~~v~SAGt~~-~~g~~~~~~a~~vl~e~Gid~~~~~~k~i~~~~~~ 75 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLA-----PDNVEVDSAGTGG-HPGEPPDPRAVEVLAEHGIDISGHRSKQLTEEDFD 75 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhc-----cCCeEEECCccCC-CCCCCCCHHHHHHHHHcCCCcCCccCccCchhhhh
Confidence 67999999999999999999999998 3689999999987 579999999999999999999 6999999999999
Q ss_pred CccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10839 95 KFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTL 173 (232)
Q Consensus 95 ~aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L 173 (232)
+||+||+||.+|...+...+|... ++.. ..+|+|||||+++.++ |+++ |++|+++|+++++.|
T Consensus 76 ~~DlIitmd~~~~~~~~~~~p~~~-----~~~~-------~~~~~v~DP~~~~~e~-~~~~---~~~i~~~~~~l~~~l 138 (139)
T COG0394 76 EFDLIITMDESNAADLCPLAPGNT-----LLLE-------YEHWEVPDPYYGSGEE-FEEV---YRLIEDAIKALLKRL 138 (139)
T ss_pred hCCEEEEeChHHHhhHhhcCcccc-----cccc-------ccCCCCCCCCCCchHH-HHHH---HHHHHHHHHHHHHHh
Confidence 999999999999999999988631 1112 2359999999998888 9999 999999999999876
No 5
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=100.00 E-value=1.4e-41 Score=272.44 Aligned_cols=137 Identities=30% Similarity=0.477 Sum_probs=127.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCCcc
Q psy10839 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYKFD 97 (232)
Q Consensus 19 ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~aD 97 (232)
|||||+||+|||||||++|+++++++ ++++|+|.|||+.++ .|.++||.|+++|+++|||+ +|+|++|+++++.+||
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~-~~~~~~v~SAG~~~~-~~~~~~~~a~~~l~~~gid~~~~~s~~l~~~~~~~~D 78 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQR-LGDRFEVESAGTEAW-PGEPVDPRAIAVLKEHGIDISGHRSRQLTEEDLDEAD 78 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHT-HTTTEEEEEEESSST-TTSSSTHHHHHHHHHTTSSCTTSBBCBGGHHHHHHSS
T ss_pred CEEEeCCCcchHHHHHHHHHHhcccc-ccCCcEEEEEeeccc-ccccccchHHHHHHHhCCCcccceeccccccccccCC
Confidence 89999999999999999999998887 457899999999987 79999999999999999999 6999999999999999
Q ss_pred EEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy10839 98 YIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFL 170 (232)
Q Consensus 98 lII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll 170 (232)
|||+||+.|++.+.+.+|.....|+++|++ +|+|+|||+++.+. |+++ +++|+++|++|+
T Consensus 79 ~Ii~m~~~~~~~~~~~~~~~~~~kv~~l~~---------~~~I~DP~~~~~~~-f~~~---~~~I~~~~~~ll 138 (138)
T PF01451_consen 79 LIITMDDSHREELCPLFPGDYRAKVFLLGE---------HWDIPDPYGGSLEA-FRRV---RDQIERRVKALL 138 (138)
T ss_dssp EEEESSHHHHHHHHHHHGTTGGGCEEEGGG---------ESSS-HHTTSSHHH-HHHH---HHHHHHHHHHHH
T ss_pred EEEEccHHHhhhhhhhcchhhhhhheeccc---------cCcCCCCCCCCHHH-HHHH---HHHHHHHHHHhC
Confidence 999999999999999999855789999865 59999999999999 9999 999999999986
No 6
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=100.00 E-value=1.6e-39 Score=261.44 Aligned_cols=139 Identities=31% Similarity=0.527 Sum_probs=126.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccE
Q psy10839 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDY 98 (232)
Q Consensus 19 ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDl 98 (232)
|||||+||+|||||||++|++++ +++++|.|||+.++ .|.++||.|+++|+++|||++|.+++++++++.++|+
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~-----~~~~~v~SAG~~~~-~g~~~~~~a~~~l~~~Gid~~~~~~~l~~~~~~~~Dl 74 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIV-----GDRVKIDSAGTGAW-VGGGADPRAVEVLKEHGIALSHHASQLTSSDFKNADL 74 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhc-----CCCEEEEcCcccCC-CCCCCCHHHHHHHHHcCcCccceeccCCHHHHHhCCE
Confidence 79999999999999999999998 45799999999987 6999999999999999999966566999999999999
Q ss_pred EEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy10839 99 IIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLD 171 (232)
Q Consensus 99 II~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~ 171 (232)
||+||+.|++.+...+|.....|++++++|.+. ...+|+|||+++.+. |+++ +++|+.+|..|++
T Consensus 75 Iv~m~~~~~~~~~~~~p~~~~~kv~~~~~~~~~----~~~dI~DP~~~~~~~-f~~~---~~~I~~~i~~ll~ 139 (140)
T smart00226 75 VLAMDHSHLRNICRLKPRVSRAKVELFGEYVTG----SHGDVDDPYYGGIDG-FEQV---YDELENALQEFLK 139 (140)
T ss_pred EEEeCHHHHHHHHHHccccccceeEeHhhhCcC----CCCcCCCCCCCChHH-HHHH---HHHHHHHHHHHHh
Confidence 999999999999999997336899999999863 356899999999999 9999 9999999999875
No 7
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=100.00 E-value=2.3e-39 Score=261.27 Aligned_cols=139 Identities=33% Similarity=0.559 Sum_probs=127.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYK 95 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~ 95 (232)
++|||||+||+|||||||+||++++.+ .+++|.|||+.+.+.|.+++|.++++|+++|||+ +|+|++|+++++.+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~----~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~~l~~~~~~~ 76 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK----LDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQLTEDDFDE 76 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh----CCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeeeeCCHHHHHh
Confidence 489999999999999999999999842 2799999999997668999999999999999999 79999999999999
Q ss_pred ccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy10839 96 FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFL 170 (232)
Q Consensus 96 aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll 170 (232)
||+||+|++.|.+.+...+|. ...|++.+++|.. .++|+|||+++.+. |+++ +++|+.+|+.|+
T Consensus 77 aDlIi~m~~~~~~~~~~~~~~-~~~~v~~~~~~~~------~~~i~DP~~~~~~~-f~~~---~~~I~~~v~~l~ 140 (141)
T cd00115 77 FDLIITMDESNLAELLEPPPG-GRAKVELLGEYAG------DREVPDPYYGSLEA-FEEV---YDLIEEAIKALL 140 (141)
T ss_pred CCEEEEECHHHHHHHHhcCCC-CcceEEeHhhhCc------CCCCCCCCCCChHH-HHHH---HHHHHHHHHHHh
Confidence 999999999999999877776 5789999999974 58999999999999 9999 999999999886
No 8
>PRK13530 arsenate reductase; Provisional
Probab=100.00 E-value=6.9e-37 Score=246.06 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=111.0
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccc
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDD 92 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~d 92 (232)
|.+++|||||+||+|||||||+||++++ +++++|.|||+.+ .++||.|+++|+++|||+ +|+|++|++++
T Consensus 1 ~~~~~vLFvC~~N~cRS~mAEal~~~~~-----~~~~~v~SAG~~~----~~~~~~a~~~l~e~Gi~~~~~~s~~l~~~~ 71 (133)
T PRK13530 1 MNKKTIYFLCTGNSCRSQMAEGWGKQYL-----GDKWNVYSAGIEA----HGVNPNAIKAMKEVGIDISNQTSDIIDNDI 71 (133)
T ss_pred CCCCEEEEEcCCchhHHHHHHHHHHHhc-----CCCEEEECCCCCC----CCCCHHHHHHHHHcCCCcCCCccccCChhH
Confidence 4578999999999999999999999987 4679999999976 369999999999999999 79999999999
Q ss_pred cCCccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy10839 93 FYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDT 172 (232)
Q Consensus 93 l~~aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~ 172 (232)
+.+|||||+|| ++.+.+...+|. ++.. .+|+|+|||+++.+. |+++ +++|+++|+.|++.
T Consensus 72 ~~~~D~ii~m~-~~~~~~~~~~p~----~~~~-----------~~w~i~DP~~~~~~~-f~~~---~~~I~~~v~~l~~~ 131 (133)
T PRK13530 72 LNNADLVVTLC-SHADDVCPSTPP----HVKR-----------VHWGFDDPAGKEWSE-FQRV---RDEIGERIKRFAET 131 (133)
T ss_pred hccCCEEEEec-hHhhhhccccCC----CceE-----------EECCCCCCCCCcHHH-HHHH---HHHHHHHHHHHHHh
Confidence 99999999998 555444434442 2222 269999999999998 9999 99999999999763
No 9
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=100.00 E-value=1.2e-36 Score=242.01 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=108.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYK 95 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~ 95 (232)
++|||||+||+|||||||++|+++. +++++|.|||+.+ .++||.++++|+++|||+ +|+|++|+++++++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~-----~~~~~v~SAG~~~----~~~~p~a~~~l~e~Gid~~~~~s~~l~~~~~~~ 71 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLG-----AGNIAVTSAGLEV----SRVHPTAIEVMSEIGIDISGQTSKPLENFHPED 71 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhc-----CCCEEEEcCcCCC----CCCCHHHHHHHHHhCCCcccCccccCChhHhcC
Confidence 5899999999999999999999986 3579999999985 479999999999999999 79999999999999
Q ss_pred ccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy10839 96 FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFL 170 (232)
Q Consensus 96 aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll 170 (232)
||+||+||+.+. .+|. ...+... ..+|+|+|||+++.+. |+++ +++|++++..|+
T Consensus 72 ~D~iitm~~~~~-----~~p~-~~~~~~~----------~~~w~i~DP~~~~~~~-f~~~---~~~I~~~v~~l~ 126 (126)
T TIGR02689 72 YDVVISLCGCGV-----NLPE-AWVTREI----------FEDWQLEDPDGQSIEV-FRRV---RDEIKERVVNLI 126 (126)
T ss_pred CCEEEEeCCCcc-----cCCC-ccCCCce----------eecCCCCCCCCCcHHH-HHHH---HHHHHHHHHHhC
Confidence 999999998763 3664 2222222 1379999999999999 9999 999999998874
No 10
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=100.00 E-value=1.6e-34 Score=231.14 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=102.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCccccCCcc
Q psy10839 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITKDDFYKFD 97 (232)
Q Consensus 19 ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~dl~~aD 97 (232)
|||||+||+|||||||++|++++ +++++|.|||+.+ .++||.|+++|+++|||+ +|+|++++++++.+||
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~-----~~~~~v~SaG~~~----~~~~~~a~~~l~e~Gid~~~~~~~~l~~~~~~~~D 71 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYL-----GDEWEVYSAGIEA----HGLNPNAVKAMKEVGIDISNQTSDLIDLDILNKAD 71 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhc-----CCCEEEEcCCCCC----CCcCHHHHHHHHHcCCCcCCcccccCChhhcccCC
Confidence 79999999999999999999987 4679999999975 369999999999999999 7999999999999999
Q ss_pred EEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCC------chHHHHHHHHHHHHHHHHHHHH
Q psy10839 98 YIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLK------TKELINALDDIIHRGYWYLRGF 169 (232)
Q Consensus 98 lII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~------~~~~fe~~~~~~~~I~~~v~~l 169 (232)
+||+|| .+.+ +.+|.. .+++.. .+|+|+|||+.+ .+. |+++ +++|+.+|..|
T Consensus 72 ~vitm~-~~~~---~~~~~~-p~~~~~-----------~~w~i~DP~~~~g~~~~~~~~-~~~~---~~~I~~~v~~l 129 (129)
T TIGR02691 72 LVVTLC-GDAR---DKCPAT-PPHVKR-----------EHWGLDDPARAEGTEEEKWAV-FRRV---RDEIKERVKDF 129 (129)
T ss_pred EEEEeC-chhc---cCCCcc-CCCCeE-----------EECCCCCCCCCCCCHHHHHHH-HHHH---HHHHHHHHHhC
Confidence 999999 4443 334542 223322 269999999988 788 9999 99999988754
No 11
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.53 E-value=1.4e-15 Score=114.19 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
|++|||||..|--|||.||.+|.+. .+++++|||+.+. .+ .+++.+.+++
T Consensus 1 m~r~lficsrnrlrsptae~~Fa~~-------~~vetdSAGl~~d--Ae---------------------~Plt~e~leW 50 (109)
T COG4551 1 MKRILFICSRNRLRSPTAEVMFATW-------PGVETDSAGLAHD--AE---------------------TPLTREQLEW 50 (109)
T ss_pred CceEEEEeccccccCcchhHHhhcC-------CCCcccccccccc--cC---------------------CCccHHHhhh
Confidence 5799999999999999999999887 4799999999874 22 5889999999
Q ss_pred ccEEEEecCCcHHHHHHhCCCCCCccEEEecccccccCCCCCCCCCCCCC
Q psy10839 96 FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFF 145 (232)
Q Consensus 96 aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~ 145 (232)
||+|++|+..|++.|.+.|....++|... -.||||-|.
T Consensus 51 AdiIfVMEr~HrqkL~krf~~~lk~kRvi------------CLDIPDdy~ 88 (109)
T COG4551 51 ADIIFVMERVHRQKLQKRFKASLKGKRVI------------CLDIPDDYE 88 (109)
T ss_pred hhhhhhHHHHHHHHHHHHhhHHhcCCeEE------------EEeCCchHh
Confidence 99999999999999988776545555432 359999764
No 12
>KOG2424|consensus
Probab=96.26 E-value=0.059 Score=45.65 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=60.8
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC--CCCCCCCHHHH-------------------H
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW--DVGKGMDPRAK-------------------E 72 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~--~~G~~~dp~Ai-------------------~ 72 (232)
++.++++.||..|.-||-=|..++++. ++.|.|-|+.+. .+|.++|..-+ +
T Consensus 3 ~~~l~~avvC~sN~NRSMeaH~~L~~~--------G~~v~S~GTg~~vklPG~~~dkPNvY~Fgt~Y~~iy~dL~~kd~~ 74 (195)
T KOG2424|consen 3 SSNLRVAVVCASNQNRSMEAHNILKKK--------GLNVRSFGTGSHVKLPGPSPDKPNVYDFGTTYKQIYNDLLRKDRE 74 (195)
T ss_pred CccceeeeeehhcccchHHHHHHHHHc--------CCcceeecCCCceeCCCCCCCCCCccccCCcHHHHHHHHHhhhHH
Confidence 467899999999999999999998775 367999999753 13444432211 1
Q ss_pred HHHHcCCC--------CCCceeccCccccCCccEEEEecCCcHHHHHHhC
Q psy10839 73 RCEMYGLD--------TEHVVREITKDDFYKFDYIIATDETDLSFLRLEA 114 (232)
Q Consensus 73 vL~e~GId--------l~hrsr~lt~~dl~~aDlII~Md~~~~~~L~~~~ 114 (232)
.-.+.||= +.-+|.++... -+.||+|+|.++.-++.+.+..
T Consensus 75 ~Y~~nGiL~mldRNrriK~~Per~q~~-t~~FDvV~TcEErvyD~VvEdl 123 (195)
T KOG2424|consen 75 LYTRNGILHMLDRNRRIKPAPERFQEC-TEVFDVVFTCEERVFDSVVEDL 123 (195)
T ss_pred HHhhcccchhhhcccccccCCcchhhc-cccceEEEEehhHHHHHHHHHH
Confidence 11223432 11244444333 3689999999999998886643
No 13
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.16 Score=38.60 Aligned_cols=43 Identities=19% Similarity=0.072 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
++|||+||-....-|.|.+-=.++.++++|++..+.+.+.+..
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~ 43 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEI 43 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccc
Confidence 4799999999999999999999999999998755555555543
No 14
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=94.39 E-value=0.38 Score=40.19 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCC--CCCCCCHHHH-------------------
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD--VGKGMDPRAK------------------- 71 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~--~G~~~dp~Ai------------------- 71 (232)
.|+-+++-.+|..|.-||-=++-+|++. ++.|.|-||.+.- .|..+|..-+
T Consensus 3 ~~~nlk~~v~CAsNqNRSMetH~vL~~a--------Gy~V~SfGTgsavrLPG~siDKPNvY~FG~pY~~IY~dL~~q~~ 74 (197)
T COG5211 3 PMPNLKLAVTCASNQNRSMETHDVLAKA--------GYPVKSFGTGSAVRLPGESIDKPNVYNFGVPYQQIYDDLCMQNE 74 (197)
T ss_pred CCCCceEEeeeccCCCcchHHHHHHHHc--------CCcccccCCCcceeCCCCCCCCCCeeecCCcHHHHHHHHHhhhh
Confidence 3567899999999999999888776553 4779999997631 3444442211
Q ss_pred HHHHHcCCC----C----CCceeccCccccCCccEEEEecCCcHHHHHH
Q psy10839 72 ERCEMYGLD----T----EHVVREITKDDFYKFDYIIATDETDLSFLRL 112 (232)
Q Consensus 72 ~vL~e~GId----l----~hrsr~lt~~dl~~aDlII~Md~~~~~~L~~ 112 (232)
..-++.|+= - ..+|-.+.+. -..||+||+-++.-.+.+.+
T Consensus 75 d~Y~~nGlL~mLdRNrrvK~aPe~wq~~-~~~fd~ViTCEERcfdaicE 122 (197)
T COG5211 75 DHYRENGLLYMLDRNRRVKEAPENWQQR-SEDFDLVITCEERCFDAICE 122 (197)
T ss_pred hhhhhccHHHHHHhcchhhhCchhhhhc-cccccEEEEehHHHHHHHHH
Confidence 111233431 0 1123333333 36799999999888877766
No 15
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=93.69 E-value=0.1 Score=44.67 Aligned_cols=90 Identities=21% Similarity=0.210 Sum_probs=51.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCC--CCCC-----------CCHHHHHHH--------
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD--VGKG-----------MDPRAKERC-------- 74 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~--~G~~-----------~dp~Ai~vL-------- 74 (232)
++++..||..|.=||--|+.+|++. ++.|.|.||+..- +|.. +-...-+-|
T Consensus 1 ~l~~avVCasN~NRSMEAH~~L~~~--------G~~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~lY 72 (195)
T PF04722_consen 1 KLRFAVVCASNQNRSMEAHNVLKKA--------GFNVRSFGTGSHVKLPGPSIDKPNVYDFGTPYDDIYNDLLRKDKELY 72 (195)
T ss_dssp -SEEEEEESSSSSHHHHHHHHHHHT--------T-EEEEEE-SSSEEEEESSTTCEEEE-TTS-HHHHHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHHC--------CCceEeecCCCcccCCCCCCCCCcccCCCCcHHHHHHHHHHhCHHHH
Confidence 3689999999999999999999874 4799999997520 1221 112222222
Q ss_pred HHcCC--------CCCCceeccCc-cccCCccEEEEecCCcHHHHHHh
Q psy10839 75 EMYGL--------DTEHVVREITK-DDFYKFDYIIATDETDLSFLRLE 113 (232)
Q Consensus 75 ~e~GI--------dl~hrsr~lt~-~dl~~aDlII~Md~~~~~~L~~~ 113 (232)
.+.|| .+--.|..+.. .+...||+|||.++.-++.+.+.
T Consensus 73 ~~NGlL~ML~RN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vved 120 (195)
T PF04722_consen 73 TQNGLLHMLDRNRRIKPAPERFQDCKEKGKFDVIITCEERVFDQVVED 120 (195)
T ss_dssp HHTSHHHHHHHHHCH-SS--BGGG-------SEEEESSHHHHHHHHHH
T ss_pred HHcCcHHHHhcCccccCCccchhcCCCCcceeEEEEechHHHHHHHHH
Confidence 23443 12224445532 23345999999999888877664
No 16
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=93.58 E-value=0.28 Score=37.05 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccE
Q psy10839 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDY 98 (232)
Q Consensus 19 ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDl 98 (232)
+++.|...+..|.||...+++.++++|+. +.|+-.|.... ...++.++...||+
T Consensus 3 ~i~ac~~G~a~s~laa~~L~~aa~~~g~~--~~ve~~~~~g~------------------------~~~l~~~~i~~Ad~ 56 (96)
T cd05569 3 AVTACPTGIAHTYMAAEALEKAAKKLGWE--IKVETQGSLGI------------------------ENELTAEDIAEADA 56 (96)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCe--EEEEEecCcCc------------------------cCcCCHHHHhhCCE
Confidence 57899999999999999999999999986 66665554321 14677788999999
Q ss_pred EEEecCCcH
Q psy10839 99 IIATDETDL 107 (232)
Q Consensus 99 II~Md~~~~ 107 (232)
||...+...
T Consensus 57 vi~~~~~~~ 65 (96)
T cd05569 57 VILAADVPV 65 (96)
T ss_pred EEEecCCCC
Confidence 999987653
No 17
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=93.21 E-value=0.2 Score=38.71 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
|++||++|.+...-|-+|+.+ ++.++++|++ ++|.-+++.
T Consensus 1 MkkILlvCg~G~STSlla~k~-k~~~~e~gi~--~~i~a~~~~ 40 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKT-TEYLKEQGKD--IEVDAITAT 40 (104)
T ss_pred CcEEEEECCCchHHHHHHHHH-HHHHHHCCCc--eEEEEecHH
Confidence 368999999999999888777 9999999986 777776654
No 18
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=92.23 E-value=0.44 Score=47.37 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
+++|||++|-....-|.|++.-+++.++++|++ ++|+.+-+..
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~--veV~~~~Vse 547 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP--IIMDSCAVND 547 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCC--eEEEEechHh
Confidence 467999999999999999999999999999996 6777766643
No 19
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=91.55 E-value=0.48 Score=35.80 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=34.6
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|..++||++|.+...-|.|++ =+++.++++|+. ++|..+++..
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~-k~~~~~~~~gi~--~~v~a~~~~~ 43 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVN-KMNKAAEEYGVP--VKIAAGSYGA 43 (95)
T ss_pred CCccEEEEECCCchhHHHHHH-HHHHHHHHCCCc--EEEEEecHHH
Confidence 356899999999999888774 667778889885 7888877653
No 20
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=91.40 E-value=0.4 Score=36.17 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=33.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
+||++|.+.+.-|.||+ =+++.++++|++ ++|..+++..
T Consensus 1 kIl~~Cg~G~sTS~~~~-ki~~~~~~~~~~--~~v~~~~~~~ 39 (96)
T cd05564 1 KILLVCSAGMSTSILVK-KMKKAAEKRGID--AEIEAVPESE 39 (96)
T ss_pred CEEEEcCCCchHHHHHH-HHHHHHHHCCCc--eEEEEecHHH
Confidence 59999999999999988 778888999986 8888887653
No 21
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=91.16 E-value=0.55 Score=35.34 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeee
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGI 57 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~ 57 (232)
++||+||.+...-|.|++.=+++.++++|++ ++|..+.+
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~--~~v~~~~~ 41 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIP--VELIQCRV 41 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCe--EEEEEecH
Confidence 4899999999999999999999999999885 67666544
No 22
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=91.02 E-value=0.67 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=27.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCC
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQT 47 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~ 47 (232)
|||+||.+.+.-|.|+..-+++.++++|+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 799999999999999999999999988764
No 23
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=90.30 E-value=0.98 Score=34.83 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.3
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeee
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGI 57 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~ 57 (232)
|.+++||.||.+...-|-|++.+-... ++.|+. ++|+..+.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~-~~~gi~--~~V~A~~~ 41 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQA-EKYEVP--VIIEAFPE 41 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHH-HHCCCC--EEEEEeec
Confidence 456799999999999999998777665 677775 77766554
No 24
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=88.29 E-value=1.1 Score=33.21 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=47.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccEEE
Q psy10839 21 FLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYII 100 (232)
Q Consensus 21 FVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII 100 (232)
.=|...+..+-||...|++.+++.|.. +.|+--|.... -..||.+++..||+||
T Consensus 4 tacp~G~Aht~lAae~L~~aA~~~G~~--i~VE~qg~~g~------------------------~~~lt~~~i~~Ad~vi 57 (85)
T TIGR00829 4 TACPTGIAHTFMAAEALEKAAKKRGWE--VKVETQGSVGA------------------------QNALTAEDIAAADGVI 57 (85)
T ss_pred ecCCCcHHHHHHHHHHHHHHHHHCCCe--EEEEecCCcCc------------------------cCCCCHHHHHhCCEEE
Confidence 458889999999999999999999986 66665554321 1478889999999999
Q ss_pred EecCCc
Q psy10839 101 ATDETD 106 (232)
Q Consensus 101 ~Md~~~ 106 (232)
...+..
T Consensus 58 ia~d~~ 63 (85)
T TIGR00829 58 LAADRE 63 (85)
T ss_pred EeccCC
Confidence 998764
No 25
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=86.19 E-value=2.2 Score=31.24 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=32.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
++|++||.+...-|.|++.-+++.+.+.|+. ..+...++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~--~~v~~~~~~ 40 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE--IPVTNSAID 40 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc--eEEEEcchh
Confidence 4799999999999999999999999887775 566655543
No 26
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=85.96 E-value=2.4 Score=33.23 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=50.5
Q ss_pred CeEEEE--cCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 17 KSVLFL--CRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 17 ~~ILFV--CtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
|+|++| |...+..+-||...|++.+++.|.. +.|+--|.... -.++|++++.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~--i~VE~qg~~g~------------------------~~~lt~~~i~ 56 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWG--VKIETQGALGT------------------------ENRLTDEDIR 56 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCe--EEEEecCCcCc------------------------CCCCCHHHHH
Confidence 566666 7788899999999999999999886 66666664331 1478889999
Q ss_pred CccEEEEecCCc
Q psy10839 95 KFDYIIATDETD 106 (232)
Q Consensus 95 ~aDlII~Md~~~ 106 (232)
.||+||...+..
T Consensus 57 ~Ad~VIia~d~~ 68 (114)
T PRK10427 57 RADVVLLITDIE 68 (114)
T ss_pred hCCEEEEEecCC
Confidence 999999998754
No 27
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=84.70 E-value=2.3 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=29.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHH---hcCCCCcEEEEEeeecc
Q psy10839 19 VLFLCRDNYMRSPMIKSLFKEMLA---MANQTNEWIVESAGIGW 59 (232)
Q Consensus 19 ILFVCtgNicRSpmAEailr~l~~---~~gl~~~i~V~SAG~~~ 59 (232)
.+|||++..|+..=++.+++.+-+ ..|+.+.+.+...|-..
T Consensus 2 ~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg 45 (77)
T cd02980 2 HILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLG 45 (77)
T ss_pred EEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcC
Confidence 589999999997767777655544 44555678888777543
No 28
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=84.03 E-value=2.7 Score=32.14 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
.+||++|.+. .-|.|+..=+++.++++|++ ++|..++..
T Consensus 1 ~~Ill~C~~G-aSSs~la~km~~~a~~~gi~--~~i~a~~~~ 39 (99)
T cd05565 1 LNVLVLCAGG-GTSGLLANALNKGAKERGVP--LEAAAGAYG 39 (99)
T ss_pred CEEEEECCCC-CCHHHHHHHHHHHHHHCCCc--EEEEEeeHH
Confidence 3799999777 66777777788888999986 777766654
No 29
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=83.55 E-value=2 Score=34.28 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred EcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccEEEE
Q psy10839 22 LCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIA 101 (232)
Q Consensus 22 VCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~ 101 (232)
-|...+.-.-||+--|.+.+.+.|.. +.|+.=|.... . .+||++|+..||+||.
T Consensus 9 ACPtGIAHTyMAAeaLe~~A~~~g~~--IKVETqGs~G~--e----------------------N~LT~edI~~Ad~VI~ 62 (122)
T COG1445 9 ACPTGIAHTYMAAEALEKAAKKLGVE--IKVETQGAVGI--E----------------------NRLTAEDIAAADVVIL 62 (122)
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCCe--EEEEcCCcccc--c----------------------CcCCHHHHHhCCEEEE
Confidence 48889999999999999999988875 99998886542 2 4899999999999999
Q ss_pred ecCCcH
Q psy10839 102 TDETDL 107 (232)
Q Consensus 102 Md~~~~ 107 (232)
-.+-..
T Consensus 63 AaD~~i 68 (122)
T COG1445 63 AADIEV 68 (122)
T ss_pred Eecccc
Confidence 987654
No 30
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=82.51 E-value=2.8 Score=35.83 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceecc------
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREI------ 88 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~l------ 88 (232)
|+||.|+|.|| +.+++++++.+... ++. ..|. .+.+. ..+..+.+.+++.||+. ...+..+
T Consensus 1 m~ki~vl~sg~---gs~~~~ll~~~~~~-~~~--~~I~--~vvs~----~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 68 (200)
T PRK05647 1 MKRIVVLASGN---GSNLQAIIDACAAG-QLP--AEIV--AVISD----RPDAYGLERAEAAGIPTFVLDHKDFPSREAF 68 (200)
T ss_pred CceEEEEEcCC---ChhHHHHHHHHHcC-CCC--cEEE--EEEec----CccchHHHHHHHcCCCEEEECccccCchhHh
Confidence 47999999999 68999999987642 222 2222 22221 12445788899999997 3222222
Q ss_pred Ccc---c--cCCccEEEEecC
Q psy10839 89 TKD---D--FYKFDYIIATDE 104 (232)
Q Consensus 89 t~~---d--l~~aDlII~Md~ 104 (232)
+++ . -.++|+||+..-
T Consensus 69 ~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 69 DAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHHHHhCcCEEEhHHh
Confidence 111 1 246899999764
No 31
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=81.87 E-value=3.7 Score=39.88 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCeEEEE--cCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCcccc
Q psy10839 16 KKSVLFL--CRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDF 93 (232)
Q Consensus 16 ~~~ILFV--CtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl 93 (232)
.|+|++| |...+..+-||...|++.++++|.. +.|+--|.... -.++|+++.
T Consensus 3 ~~kivaVtacp~GiAht~mAaeaL~~aA~~~G~~--i~VEtqg~~g~------------------------~~~lt~~~i 56 (482)
T PRK11404 3 SLRIVAITNCPAGIAHTYMVAEALEQKARSLGHT--IKVETQGSSGV------------------------ENRLSSEEI 56 (482)
T ss_pred cceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCe--EEEEecCCccC------------------------CCCCCHHHH
Confidence 3577776 7788899999999999999999986 66666554321 147888999
Q ss_pred CCccEEEEecC
Q psy10839 94 YKFDYIIATDE 104 (232)
Q Consensus 94 ~~aDlII~Md~ 104 (232)
++||+||...+
T Consensus 57 ~~Ad~VIia~d 67 (482)
T PRK11404 57 AAADYVILATG 67 (482)
T ss_pred HhCCEEEEeec
Confidence 99999999965
No 32
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=81.85 E-value=3.4 Score=28.57 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCC
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQT 47 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~ 47 (232)
+|++||.++..-|.|+..-+++.+.+.++.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 589999999999999999999999877663
No 33
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=79.23 E-value=3.8 Score=31.02 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCC-CcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQT-NEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~-~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+.-+||+-|...+.+.+.+.|.+ .++.+--+|+..|
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w 111 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAW 111 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhh
Confidence 346799999988889998877777777666753 3455556666554
No 34
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=78.71 E-value=6.4 Score=27.88 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHH
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEML 41 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~ 41 (232)
.+|++||..+..=|.|.+.-+++.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~ 25 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLF 25 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHC
Confidence 4799999999999999988888887
No 35
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=78.54 E-value=5.7 Score=28.78 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=28.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEee
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAG 56 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG 56 (232)
.+||+||.+...-|.|...=+++.+.+.++. ..+....
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~--~~v~~~~ 38 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGID--VKVEQCK 38 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc--eEEEEec
Confidence 4799999999999988888888888877764 4444333
No 36
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=78.23 E-value=2.7 Score=34.59 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.+...||.+|-..|+.+ |. .++.+..+|+..|
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~----G~-~~V~~l~GG~~aW 155 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAY----GY-SNVYWYPDGTDGW 155 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhc----CC-cceEEecCCHHHH
Confidence 45789999998666999988777665 44 4788889999887
No 37
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=77.60 E-value=6 Score=39.26 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCCeEEEE--cCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccc
Q psy10839 15 GKKSVLFL--CRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDD 92 (232)
Q Consensus 15 ~~~~ILFV--CtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~d 92 (232)
+.++|+.| |...+..+-||...|++.++++|.. +.|+.-|.... -.++|+++
T Consensus 102 ~~~kivaVtacptGiAht~mAAeaL~~aA~~~G~~--i~VEtqg~~g~------------------------~n~lt~~~ 155 (563)
T PRK10712 102 GPKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWW--VKVETRGSVGA------------------------GNAITPEE 155 (563)
T ss_pred ccccEEEEecCCCchhHHHHHHHHHHHHHHHCCCe--EEEEecCCccc------------------------CCCCCHHH
Confidence 35677777 7888999999999999999999886 77776665431 14789999
Q ss_pred cCCccEEEEecCCcH
Q psy10839 93 FYKFDYIIATDETDL 107 (232)
Q Consensus 93 l~~aDlII~Md~~~~ 107 (232)
.+++|+||...+...
T Consensus 156 i~~Ad~VIia~d~~v 170 (563)
T PRK10712 156 VAAADLVIVAADIEV 170 (563)
T ss_pred HHhCCEEEEecCCCc
Confidence 999999999998753
No 38
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=76.21 E-value=6.3 Score=33.43 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=47.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccC------
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREIT------ 89 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt------ 89 (232)
+||.++|.||- .+++++++.+.+. ...+.=+.+.+. ..+-.+.+.++++||+. ...++.+.
T Consensus 1 ~riail~sg~g---s~~~~ll~~~~~~-----~l~~~I~~vi~~----~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~ 68 (190)
T TIGR00639 1 KRIVVLISGNG---SNLQAIIDACKEG-----KIPASVVLVISN----KPDAYGLERAAQAGIPTFVLSLKDFPSREAFD 68 (190)
T ss_pred CeEEEEEcCCC---hhHHHHHHHHHcC-----CCCceEEEEEEC----CccchHHHHHHHcCCCEEEECccccCchhhhh
Confidence 57889998875 5888999888642 222333344332 13456678899999997 32222221
Q ss_pred ccc---c--CCccEEEEecCC
Q psy10839 90 KDD---F--YKFDYIIATDET 105 (232)
Q Consensus 90 ~~d---l--~~aDlII~Md~~ 105 (232)
++. + ..+|+||++.-.
T Consensus 69 ~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHHHHHhcCCCEEEEeCcc
Confidence 111 1 368999999754
No 39
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=75.34 E-value=4.7 Score=38.33 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
-.+|.|+|-..-.-|.|.+.+||+.++++|+ +++.|.-..+.
T Consensus 378 v~~iifaCDAGMGSSAMGAsilrkk~k~agl-~~I~V~n~AIn 419 (472)
T COG2213 378 VKKIIFACDAGMGSSAMGASILRKKLKNAGL-NDISVTNYAIN 419 (472)
T ss_pred eeEEEEEEcCCCChhhhhHHHHHHHHHhCCC-CceeEeehhhh
Confidence 3589999999999999999999999999999 47888765554
No 40
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=73.63 E-value=11 Score=33.77 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
..+|-||=.||+.-|+|.+-++.+.+.. .++++...|+.+
T Consensus 2 vvKiGiiKlGNig~s~~idl~lDErAdR----edI~vrv~gsGa 41 (277)
T PRK00994 2 VVKIGIIKLGNIGMSPVIDLLLDERADR----EDIDVRVVGSGA 41 (277)
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhcc----cCceEEEeccCC
Confidence 4589999999999999999999998853 467777777755
No 41
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=72.29 E-value=20 Score=30.56 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=48.4
Q ss_pred ccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCc
Q psy10839 11 FLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90 (232)
Q Consensus 11 ~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~ 90 (232)
|+-...++||+|..|++ |...++.++. .| ..+.|.| + ..++...+.+.+..+ .+..+.+.+
T Consensus 5 ~l~l~~k~vLVIGgG~v-----a~~ka~~Ll~-~g--a~V~VIs----~-----~~~~~l~~l~~~~~i--~~~~~~~~~ 65 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKV-----AGRRAITLLK-YG--AHIVVIS----P-----ELTENLVKLVEEGKI--RWKQKEFEP 65 (202)
T ss_pred EEEcCCCEEEEECCCHH-----HHHHHHHHHH-CC--CeEEEEc----C-----CCCHHHHHHHhCCCE--EEEecCCCh
Confidence 34455689999999864 5555566654 23 3577775 2 245555554444223 334567778
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.++..+|+||+.++.
T Consensus 66 ~~l~~adlViaaT~d 80 (202)
T PRK06718 66 SDIVDAFLVIAATND 80 (202)
T ss_pred hhcCCceEEEEcCCC
Confidence 889999999998754
No 42
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=72.20 E-value=8.1 Score=39.63 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=22.1
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHH
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFK 38 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr 38 (232)
||++++|+|+..|.+.+|.+|+.+.+
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~ 26 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLD 26 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHH
Confidence 56777899999999999999987653
No 43
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=71.16 E-value=7.5 Score=27.03 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+. .||..|...|++.. . .++.+..+|+..|
T Consensus 49 ~~~~vv~~c~~~-~~a~~~~~~l~~~G----~-~~v~~l~gG~~~w 88 (89)
T cd00158 49 KDKPIVVYCRSG-NRSARAAKLLRKAG----G-TNVYNLEGGMLAW 88 (89)
T ss_pred CCCeEEEEeCCC-chHHHHHHHHHHhC----c-ccEEEecCChhhc
Confidence 457899999883 68888887777653 2 4678888888654
No 44
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=71.14 E-value=9.1 Score=27.34 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=32.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCC-------CCcEEEEEeeecc
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQ-------TNEWIVESAGIGW 59 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl-------~~~i~V~SAG~~~ 59 (232)
+.+|||.|..|..-=|+.+++.+-++.+. .+.+.+...|-..
T Consensus 2 ~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG 50 (80)
T cd03064 2 HVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLG 50 (80)
T ss_pred EEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcC
Confidence 46899999999999999998888765432 2357788777654
No 45
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.94 E-value=9.5 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCC
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQT 47 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~ 47 (232)
+||+||.....=|.|.+.=+++++.+.|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 589999999999999999998888776663
No 46
>KOG1794|consensus
Probab=70.05 E-value=8.6 Score=35.36 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccceeeeeccCccccccccchhhhhhhhHHHHHhh
Q psy10839 136 GPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEVPETTTLKIVTVRTSPKIKSSTWNAWRLEMSSLQALVSR 215 (232)
Q Consensus 136 ~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (232)
++-++.||.- .+. |+.+ -+.+-..|..++.++...+....++.+|-++ +-||+|.+-++-.-.-.+.
T Consensus 224 ~~ae~Gd~~~--~~i-fr~A---g~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG-------~V~~Sw~~l~~Gfl~sls~ 290 (336)
T KOG1794|consen 224 EHAEIGDPLS--AEI-FRNA---GETLGRHVVAVLPQLPPTLKKGKTLPIVCVG-------GVFDSWDLLQEGFLDSLSD 290 (336)
T ss_pred hhhhccCHHH--HHH-HHHH---HHHHHHHHHHHHhhcCchhcccCcceEEEEc-------chhhHHHHHHHHHHHHhhc
Confidence 4556777743 456 8888 8899999999999988888888999999997 5799999988887777777
Q ss_pred hcccceee
Q psy10839 216 TKFKDRIT 223 (232)
Q Consensus 216 ~~~~~~~~ 223 (232)
+.|-.+++
T Consensus 291 ~~~f~~~~ 298 (336)
T KOG1794|consen 291 TRGFERVE 298 (336)
T ss_pred ccCccceE
Confidence 76666554
No 47
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=69.60 E-value=5.9 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+. .||..|..+|+.+ |. .++.+-.+|+..|
T Consensus 60 ~~~~ivvyC~~G-~rs~~a~~~L~~~----G~-~~v~~l~GG~~~W 99 (101)
T cd01518 60 KGKKVLMYCTGG-IRCEKASAYLKER----GF-KNVYQLKGGILKY 99 (101)
T ss_pred CCCEEEEECCCc-hhHHHHHHHHHHh----CC-cceeeechhHHHH
Confidence 456899999754 7888887666443 54 3566677887665
No 48
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=68.75 E-value=4.7 Score=30.65 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=35.6
Q ss_pred CHHHHHHHHHcCCCCCCceeccCccccCCccEEEEecCCcH
Q psy10839 67 DPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETDL 107 (232)
Q Consensus 67 dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~~~ 107 (232)
||.|++.+++.|+++++.-..|+.+++..-|.||..=.-|+
T Consensus 6 H~GAieW~~~qg~~iD~~v~Hld~~~i~~GD~ViGtLPvhL 46 (93)
T PF09652_consen 6 HPGAIEWAKQQGIQIDHFVDHLDPADIQPGDVVIGTLPVHL 46 (93)
T ss_pred cccHHHHHHHhCCCcceeeccCCHHHccCCCEEEEeCcHHH
Confidence 68899999999999987666999999999999998866554
No 49
>KOG1602|consensus
Probab=66.55 E-value=4.8 Score=36.13 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
|.+|-|||-|| +..++++||. ..+-.+||.... ...++.+.+.||..
T Consensus 37 P~HVaFIMDGN-----------RR~AKk~~L~-~~~GH~aGf~~l-------~~ile~C~~lGI~~ 83 (271)
T KOG1602|consen 37 PRHVAFIMDGN-----------RRYAKKRGLE-TSEGHEAGFEAL-------KEILELCKELGIKE 83 (271)
T ss_pred cceeEEEecCc-----------hHHHHhcCCC-cccchHHHHHHH-------HHHHHHHHHcCCcE
Confidence 68999999999 5778888886 477888887664 46677888899875
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=66.20 E-value=6.3 Score=31.35 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+. -||.+|..+|++. |. .++....+|+..|
T Consensus 80 ~~~~IivyC~sG-~RS~~Aa~~L~~~----G~-~~v~~l~GG~~~W 119 (136)
T PLN02160 80 PADDILVGCQSG-ARSLKATTELVAA----GY-KKVRNKGGGYLAW 119 (136)
T ss_pred CCCcEEEECCCc-HHHHHHHHHHHHc----CC-CCeeecCCcHHHH
Confidence 456899999766 8999998777543 54 3567778888765
No 51
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=65.05 E-value=7.6 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+|+|.+.. ||..|..+|+.+ |. .++.+..+|+..|
T Consensus 66 ~~~ivv~c~~g~-~s~~~~~~l~~~----G~-~~v~~~~Gg~~~W 104 (106)
T cd01519 66 DKELIFYCKAGV-RSKAAAELARSL----GY-ENVGNYPGSWLDW 104 (106)
T ss_pred CCeEEEECCCcH-HHHHHHHHHHHc----CC-ccceecCCcHHHH
Confidence 468999998754 887776666544 44 3566677777654
No 52
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=63.92 E-value=12 Score=31.87 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=31.0
Q ss_pred cCCCeEEEEcCCCchHHHHHH--HHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIK--SLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAE--ailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|.+++|+++|.||.-|.==+- .+.+.+.+...++.++++..+|+.+
T Consensus 1 ~~~~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g 48 (195)
T PRK10264 1 MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQG 48 (195)
T ss_pred CCCCCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCH
Confidence 355789999999999983222 2333433333456679999999865
No 53
>PRK06988 putative formyltransferase; Provisional
Probab=63.67 E-value=28 Score=31.70 Aligned_cols=78 Identities=10% Similarity=-0.058 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCC-CCCCCCHHHHHHHHHcCCCC-CCceeccCccc-
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD-VGKGMDPRAKERCEMYGLDT-EHVVREITKDD- 92 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~-~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~~d- 92 (232)
||||+|.+++. +|-..|+.+++. | ++|.---+.+.. .+......+.+.++++||++ . +..++.++
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~-~----~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~--~~~~~~~~~ 69 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLAR-G----VDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVIT--PADPNDPEL 69 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhC-C----CCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEc--cccCCCHHH
Confidence 37999998875 556666666642 2 233222222211 12212346778889999997 3 12222111
Q ss_pred -----cCCccEEEEecCC
Q psy10839 93 -----FYKFDYIIATDET 105 (232)
Q Consensus 93 -----l~~aDlII~Md~~ 105 (232)
-.++|+||+..-.
T Consensus 70 ~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 70 RAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHhcCCCEEEEehhc
Confidence 1468999999754
No 54
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=63.63 E-value=9.8 Score=28.21 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccEEEEecCCc
Q psy10839 32 MIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETD 106 (232)
Q Consensus 32 mAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~~ 106 (232)
||...|++.+++.|+. +.|+--|.... -..||.+++..||+||...+..
T Consensus 1 mAAeaL~~aA~~~G~~--i~VEtqg~~g~------------------------~~~lt~~~i~~Ad~VIia~d~~ 49 (88)
T PRK10474 1 MAAEALESAAKAKGWE--VKVETQGSIGL------------------------ENELTAEDVASADMVILTKDIG 49 (88)
T ss_pred CHHHHHHHHHHHCCCe--EEEEecCCcCc------------------------CCCCCHHHHHhCCEEEEEecCC
Confidence 6777788888888876 55555554321 1478889999999999998754
No 55
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=63.61 E-value=8.4 Score=28.01 Aligned_cols=40 Identities=8% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+..+|+|+|.++ -||+.+...|+. .|. +++.+..+|+..|
T Consensus 55 ~~~~ivv~c~~g-~~s~~~~~~l~~----~G~-~~v~~l~GG~~~W 94 (96)
T cd01529 55 RATRYVLTCDGS-LLARFAAQELLA----LGG-KPVALLDGGTSAW 94 (96)
T ss_pred CCCCEEEEeCCh-HHHHHHHHHHHH----cCC-CCEEEeCCCHHHh
Confidence 456799999865 477776655543 455 3688888887665
No 56
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=63.18 E-value=10 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+| ++--||+.|-.+|++. |. ..+.+..+|+..|
T Consensus 55 ~~~~iv~~c-~~g~~a~~~~~~l~~~----G~-~~v~~l~GG~~~w 94 (100)
T smart00450 55 KDKPVVVYC-RSGNRSAKAAWLLREL----GF-KNVYLLDGGYKEW 94 (100)
T ss_pred CCCeEEEEe-CCCcHHHHHHHHHHHc----CC-CceEEecCCHHHH
Confidence 457899999 5667888877776654 44 3588888888765
No 57
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=62.00 E-value=10 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+.. ||..|...|+.. |.. +..-.+|+..|
T Consensus 60 ~~~~ivv~C~~G~-rs~~aa~~L~~~----G~~--~~~l~GG~~~W 98 (100)
T cd01523 60 DDQEVTVICAKEG-SSQFVAELLAER----GYD--VDYLAGGMKAW 98 (100)
T ss_pred CCCeEEEEcCCCC-cHHHHHHHHHHc----Cce--eEEeCCcHHhh
Confidence 4568999998654 898888777553 543 56667777655
No 58
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=60.54 E-value=10 Score=28.69 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
....|+|+|.++. ||..|..+|+++ |. ..+.+. +|+.+|
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa~~L~~~----G~-~~v~~~-GG~~~~ 95 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAKDILLDM----GY-THAENA-GGIKDI 95 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHHHHHHHc----CC-CeEEec-CCHHHh
Confidence 4567999997764 888887666644 44 356664 888776
No 59
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=60.39 E-value=19 Score=36.20 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=34.5
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESA 55 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SA 55 (232)
...++|++||..+..-|.|++..+++.+++.+++ +++|...
T Consensus 376 ~~~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~-~i~i~~~ 416 (639)
T PRK15083 376 SHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLS-QISVTNS 416 (639)
T ss_pred hccCEEEEECCCCccHHHHHHHHHHHHHHHcCCC-eeEEEEe
Confidence 3467899999999999999999999999988763 5666655
No 60
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=59.93 E-value=14 Score=30.40 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=28.0
Q ss_pred CeEEEEcCCCchHHHHHH--HHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 17 KSVLFLCRDNYMRSPMIK--SLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAE--ailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|+++++|.||.-|.==+- .+.+.+.+..+++.++++..+|+.+
T Consensus 1 m~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~ 45 (164)
T PRK10466 1 MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG 45 (164)
T ss_pred CceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH
Confidence 579999999999972222 2223332223456679999999865
No 61
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=59.35 E-value=15 Score=33.51 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
...+|.||.+|+..|..+ +++... +. ...+.|.+..... . ....+.+++.|+.... .... ++.+.
T Consensus 127 ~~~~lgiiG~G~qA~~~l-~al~~~----~~-~~~v~V~~r~~~~------~-~~~~~~~~~~g~~v~~-~~~~-~eav~ 191 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQL-EALSRV----FD-LEEVSVYCRTPST------R-EKFALRASDYEVPVRA-ATDP-REAVE 191 (325)
T ss_pred CCCEEEEECCCHHHHHHH-HHHHhc----CC-CCEEEEECCCHHH------H-HHHHHHHHhhCCcEEE-eCCH-HHHhc
Confidence 357899999999999876 666442 12 2567777543221 1 1222333455654311 0111 24568
Q ss_pred CccEEEEecCCc
Q psy10839 95 KFDYIIATDETD 106 (232)
Q Consensus 95 ~aDlII~Md~~~ 106 (232)
++|+|++.+.+.
T Consensus 192 ~aDiVitaT~s~ 203 (325)
T TIGR02371 192 GCDILVTTTPSR 203 (325)
T ss_pred cCCEEEEecCCC
Confidence 999999998654
No 62
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=58.43 E-value=25 Score=30.97 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=37.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHH
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~v 73 (232)
-+|.|+=.||+.-||+-+.++...+.. .+++|.--|+++ .++|..++.
T Consensus 3 vkig~ik~GniGts~v~dlllDErAdR----edi~vrVvgsga-----KM~Pe~vea 50 (277)
T COG1927 3 VKIGFIKCGNIGTSPVVDLLLDERADR----EDIEVRVVGSGA-----KMDPECVEA 50 (277)
T ss_pred eEEEEEEecccchHHHHHHHHHhhccc----CCceEEEecccc-----ccChHHHHH
Confidence 479999999999999999999888764 467787778765 377775443
No 63
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=58.02 E-value=19 Score=27.05 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHh----cCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAM----ANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~----~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.+.-.||+.|...+.+.+.. .|. .++.+--+|+..|
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~-~~v~~l~gG~~~w 109 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSK-FEVYVLHGGFNAW 109 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCC-CeEEEEcChHHHH
Confidence 34689999985557999998877665433 244 3577777777655
No 64
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=56.69 E-value=19 Score=36.10 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred CeEEEE--cCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 17 KSVLFL--CRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 17 ~~ILFV--CtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
++|++| |...+..+-||+..|++.++++|.. +.|+--|.... -.++|+++.+
T Consensus 164 ~~i~avtacp~G~aht~mAae~L~~aA~~~g~~--i~vE~~g~~g~------------------------~~~lt~~~i~ 217 (631)
T PRK09765 164 PTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVN--VYVEKQGANGI------------------------EGRLTADQLN 217 (631)
T ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHHHCCCe--EEEEecCCcCC------------------------CCCCCHHHHH
Confidence 456665 7788999999999999999999886 66666554321 1478999999
Q ss_pred CccEEEEecCCc
Q psy10839 95 KFDYIIATDETD 106 (232)
Q Consensus 95 ~aDlII~Md~~~ 106 (232)
+||+||...+..
T Consensus 218 ~Ad~Viia~d~~ 229 (631)
T PRK09765 218 SATACIFAAEVA 229 (631)
T ss_pred hCCEEEEeecCc
Confidence 999999998865
No 65
>KOG0409|consensus
Probab=56.45 E-value=34 Score=31.67 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=53.4
Q ss_pred chhhhhccccccC------------CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHH
Q psy10839 3 CCEEVWGGFLFEG------------KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRA 70 (232)
Q Consensus 3 ~~~~~~~~~~~~~------------~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~A 70 (232)
||.+.|+.-+.++ .++|-||..||-. |.|+ +++++ +|. .+.|+- .+...
T Consensus 10 ~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG-~~M~----~nLik-~G~--kVtV~d-----------r~~~k 70 (327)
T KOG0409|consen 10 SILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMG-SAMV----SNLIK-AGY--KVTVYD-----------RTKDK 70 (327)
T ss_pred HHHHhhcccccccccccccccCCcccceeeEEeeccch-HHHH----HHHHH-cCC--EEEEEe-----------CcHHH
Confidence 6667777666552 4789999999955 3444 45553 222 244432 56778
Q ss_pred HHHHHHcCCCCCCceeccCccccCCccEEEEecCC
Q psy10839 71 KERCEMYGLDTEHVVREITKDDFYKFDYIIATDET 105 (232)
Q Consensus 71 i~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~ 105 (232)
.+-++++|-.....|..+ .+.+|+||+|=..
T Consensus 71 ~~~f~~~Ga~v~~sPaeV----ae~sDvvitmv~~ 101 (327)
T KOG0409|consen 71 CKEFQEAGARVANSPAEV----AEDSDVVITMVPN 101 (327)
T ss_pred HHHHHHhchhhhCCHHHH----HhhcCEEEEEcCC
Confidence 888999999884444433 5679999999754
No 66
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=56.23 E-value=48 Score=27.02 Aligned_cols=73 Identities=12% Similarity=-0.027 Sum_probs=46.4
Q ss_pred ccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCc
Q psy10839 11 FLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90 (232)
Q Consensus 11 ~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~ 90 (232)
|+-...++||+|..|+. |....+.+++. +..+.|.| +. ..+... +.+ .+.+..+.+.+
T Consensus 8 ~l~l~~~~vlVvGGG~v-----a~rka~~Ll~~---ga~V~VIs----p~-----~~~~l~----~l~-~i~~~~~~~~~ 65 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKI-----AYRKASGLKDT---GAFVTVVS----PE-----ICKEMK----ELP-YITWKQKTFSN 65 (157)
T ss_pred EEEcCCCEEEEECCCHH-----HHHHHHHHHhC---CCEEEEEc----Cc-----cCHHHH----hcc-CcEEEecccCh
Confidence 44455689999998865 45555565532 34577763 31 334332 222 12456678888
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.++..+|+||+.++.
T Consensus 66 ~dl~~a~lViaaT~d 80 (157)
T PRK06719 66 DDIKDAHLIYAATNQ 80 (157)
T ss_pred hcCCCceEEEECCCC
Confidence 999999999998765
No 67
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=56.18 E-value=25 Score=27.87 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCC-Cce
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTE-HVV 85 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~-hrs 85 (232)
.+..|||=|..+. ||-++-+++.... |+ ..+.+++.+++.|+|++ -++
T Consensus 85 ~~~pvL~HC~sG~-Rt~~l~al~~~~~--------------g~--------~~~~i~~~~~~~G~~~~~~~~ 133 (135)
T TIGR01244 85 AEGPVLAYCRSGT-RSSLLWGFRQAAE--------------GV--------PVEEIVRRAQAAGYDLSNFRP 133 (135)
T ss_pred CCCCEEEEcCCCh-HHHHHHHHHHHHc--------------CC--------CHHHHHHHHHHcCCCcccccc
Confidence 4567999999999 9888776654321 32 34678888899999983 443
No 68
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=55.80 E-value=43 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=39.7
Q ss_pred CeEEEEcC--CCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 17 KSVLFLCR--DNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 17 ~~ILFVCt--gNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
|+|||+.- |+..|.-++ ..+.++-+++.. ++.|.-+-..+ .|..+++...+.|.+.|+|+
T Consensus 1 m~ilfiGDi~G~~Gr~~l~-~~L~~lk~~~~~--D~vIaNgEn~~--gG~Gi~~~~~~~L~~~GvDv 62 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVK-NNLPQLKSKYQA--DLVIANGENTT--HGKGLTLKIYEFLKQSGVNY 62 (266)
T ss_pred CeEEEEEecCCHHHHHHHH-HHHHHHHHhCCC--CEEEEcCcccC--CCCCCCHHHHHHHHhcCCCE
Confidence 58999852 666777777 445555544433 45555433332 24568899999999999997
No 69
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=55.42 E-value=14 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+|+|.+.. ||..|..+|+.+ |..+.+....+|+..|
T Consensus 66 ~~~ivv~C~~G~-rs~~a~~~L~~~----G~~~~v~~l~gG~~~W 105 (109)
T cd01533 66 RTPIVVNCAGRT-RSIIGAQSLINA----GLPNPVAALRNGTQGW 105 (109)
T ss_pred CCeEEEECCCCc-hHHHHHHHHHHC----CCCcceeEecCCHHHH
Confidence 457999996654 888776666543 5532266667787655
No 70
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=55.36 E-value=31 Score=32.10 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCC---C-CceeccCccc----cCCccEEEEecCCcH
Q psy10839 69 RAKERCEMYGLDT---E-HVVREITKDD----FYKFDYIIATDETDL 107 (232)
Q Consensus 69 ~Ai~vL~e~GIdl---~-hrsr~lt~~d----l~~aDlII~Md~~~~ 107 (232)
.|.+.|++.||+. + +.-++|+.+. ++..+.||++++...
T Consensus 245 ~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~ 291 (356)
T PLN02683 245 KAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWP 291 (356)
T ss_pred HHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCc
Confidence 4456677889986 3 6778888654 467899999998653
No 71
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=55.09 E-value=25 Score=27.17 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHh---c-----CCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAM---A-----NQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~---~-----gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|..+--||+.|..+|+....+ . |. ..+.+--+|+..+
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~-~~v~~L~GG~~~f 119 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYY-PEIYILEGGYKNF 119 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCC-CeEEEEcChhHhh
Confidence 45789999975557999999999886322 1 33 3577777887653
No 72
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=54.92 E-value=14 Score=28.65 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCccceeeeeccCccccccccchhh
Q psy10839 152 INALDDIIHRGYWYLRGFLDTLGIEVPETTTLKIVTVRTSPKIKSSTWNAWR 203 (232)
Q Consensus 152 fe~~~~~~~~I~~~v~~ll~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (232)
.+++ .++|.+.+...-..++.-.|-++-...++++-+|.+-.++|+.|.
T Consensus 18 LD~~---~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~k~s~e~fE 66 (104)
T COG0051 18 LDQV---CREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKDSREQFE 66 (104)
T ss_pred HHHH---HHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCCCchHHHhh
Confidence 4445 778888888777778888899999999999999999988999995
No 73
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=54.30 E-value=13 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|. +-.||..|...|+.+ |. .++.+.-+|+..|
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~----G~-~~v~~l~gG~~~w 94 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREA----GF-TDVRSLAGGFEAW 94 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHc----CC-ceEEEcCCCHHHh
Confidence 4568999999 667888887777765 33 3566666776554
No 74
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=53.28 E-value=19 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+..+|+|+|.+. .||.+|...|+++ |. .++.+.-.|+..+
T Consensus 63 ~~~~ivv~C~~G-~rs~~aa~~L~~~----G~-~~v~~l~gG~~~~ 102 (117)
T cd01522 63 KDRPVLLLCRSG-NRSIAAAEAAAQA----GF-TNVYNVLEGFEGD 102 (117)
T ss_pred CCCeEEEEcCCC-ccHHHHHHHHHHC----CC-CeEEECcCceecC
Confidence 557799999876 6888887776554 44 4677778888776
No 75
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.04 E-value=43 Score=28.53 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=46.9
Q ss_pred ccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCc
Q psy10839 11 FLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90 (232)
Q Consensus 11 ~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~ 90 (232)
|+-...++||+|..|.+. +.-++.+++ . +..+.|.| + .+++..... .+.| .+....+..+.
T Consensus 4 ~l~l~gk~vlVvGgG~va-----~rk~~~Ll~-~--ga~VtVvs----p-----~~~~~l~~l-~~~~-~i~~~~~~~~~ 64 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVA-----LRKARLLLK-A--GAQLRVIA----E-----ELESELTLL-AEQG-GITWLARCFDA 64 (205)
T ss_pred EEEcCCCeEEEECcCHHH-----HHHHHHHHH-C--CCEEEEEc----C-----CCCHHHHHH-HHcC-CEEEEeCCCCH
Confidence 344456799999999654 555555553 2 34677765 2 144555443 4444 33333445567
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.++..+|+||+-++.
T Consensus 65 ~dl~~~~lVi~at~d 79 (205)
T TIGR01470 65 DILEGAFLVIAATDD 79 (205)
T ss_pred HHhCCcEEEEECCCC
Confidence 789999999888755
No 76
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=52.72 E-value=32 Score=26.64 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVES 54 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~S 54 (232)
+++||.||.+.---|-|+..+= +.++.+|..-.+++.|
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~-~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMK-KAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHH-HHHHhCCCceEEEEec
Confidence 4789999999999999887654 4455566653344434
No 77
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=52.54 E-value=17 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+++|.++ -||..|-.+|+++ |. .++.+.-+|+..|
T Consensus 58 ~~~vv~~c~~g-~rs~~~~~~l~~~----G~-~~v~~l~GG~~~w 96 (101)
T cd01528 58 DKDIVVLCHHG-GRSMQVAQWLLRQ----GF-ENVYNLQGGIDAW 96 (101)
T ss_pred CCeEEEEeCCC-chHHHHHHHHHHc----CC-ccEEEecCCHHHH
Confidence 56899999875 5888887777653 55 3677888888766
No 78
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=52.23 E-value=35 Score=32.05 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHH-HHHHHHHcCCCCCCceeccCccccCCccEEEEecCCcHHHH
Q psy10839 32 MIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPR-AKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFL 110 (232)
Q Consensus 32 mAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~-Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~~~~~L 110 (232)
.|+.+.++.....+ +.+..|.-.|++|. |. +|=. ..+++.-..|- +.|.. .-.+.-+|+..|+-. .|
T Consensus 7 ~A~~i~~~r~~~~~-~~~~~v~~sG~sPS--G~-~HIGn~rEv~~~~~V~-----~al~~-~g~~~r~i~~~DD~D--~l 74 (360)
T PF01921_consen 7 IADEIIKERGKRKG-GKEPYVFASGISPS--GL-PHIGNFREVLRADMVA-----RALRD-RGKDVRLIYFSDDMD--PL 74 (360)
T ss_dssp HHHHHHHHC--------SEEEEEEEE--S--S----HHHHHHHHHHHHHH-----HHHHT-TT-EEEEEEEE-TTS--B-
T ss_pred HHHHHHHHhhcccc-CCccEEEecCCCCC--CC-cccccccchhhHHHHH-----HHHHH-cCCCEEEEEEeecCC--cc
Confidence 45555554443222 34567777799985 54 4432 22222211111 11111 112245566665431 12
Q ss_pred HHhCCCCCCccEEEecccccccCCCCCCCCCCCCCCCc
Q psy10839 111 RLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKT 148 (232)
Q Consensus 111 ~~~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~ 148 (232)
+..|.+.... .+..|.+. .-..||||+|.-.
T Consensus 75 -RKvP~~~p~~--~~~~ylg~----Plt~VPdP~G~~~ 105 (360)
T PF01921_consen 75 -RKVPPNVPNP--ELEKYLGK----PLTRVPDPFGCHE 105 (360)
T ss_dssp -----TTS-CC---CCCCTTS----BTTTSB-TTSSSS
T ss_pred -cCCCCCCChH--HHHHhcCC----ccccCCCCCCCCc
Confidence 2334322222 34444432 2578999998744
No 79
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=52.16 E-value=58 Score=29.45 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=42.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCC-CCHHHHHHHHHcCCCCCCceeccCc-c---
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKG-MDPRAKERCEMYGLDTEHVVREITK-D--- 91 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~-~dp~Ai~vL~e~GIdl~hrsr~lt~-~--- 91 (232)
|||+|++++. +|-..|+.+.+. +. .-+.|.+.--.+...|.. ..+.+.+.++++||++ +.+..++. +
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~-~~-~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~-~~~~~~~~~~~~~ 72 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLES-GH-EVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPV-LQPEKLRDPEFLA 72 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHC-CC-cEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCE-ECcCCCCCHHHHH
Confidence 5899997765 555666666642 21 112232211111111221 2345677888999997 11222221 1
Q ss_pred --ccCCccEEEEecCC
Q psy10839 92 --DFYKFDYIIATDET 105 (232)
Q Consensus 92 --dl~~aDlII~Md~~ 105 (232)
.-.++|+||++.-.
T Consensus 73 ~l~~~~~Dliv~~~~~ 88 (309)
T PRK00005 73 ELAALNADVIVVVAYG 88 (309)
T ss_pred HHHhcCcCEEEEehhh
Confidence 12378999998753
No 80
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=51.80 E-value=17 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
..+|+|+|.++. ||..|..+|+. .|. + +.+..+|+..|
T Consensus 56 ~~~iv~~c~~G~-rs~~aa~~L~~----~G~-~-v~~l~GG~~~W 93 (95)
T cd01534 56 GARIVLADDDGV-RADMTASWLAQ----MGW-E-VYVLEGGLAAA 93 (95)
T ss_pred CCeEEEECCCCC-hHHHHHHHHHH----cCC-E-EEEecCcHHHh
Confidence 457999998654 67766666543 354 3 66677787655
No 81
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=51.28 E-value=21 Score=26.72 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYM-RSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNic-RSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.+..| ||+.|-..|+++ |. .+.+..+|+..|
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~----G~--~v~~l~GG~~~W 103 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAEL----GF--PVKEMIGGLDWW 103 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHc----CC--eEEEecCCHHHH
Confidence 45689999988776 677766555543 55 377778888766
No 82
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=51.16 E-value=1.2e+02 Score=27.27 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
+++|.||..|| ||++|+..+.+.-.++ .-+|.... +-.+......+++|+.. ..=..+...+
T Consensus 1 ~~~IgfIG~G~-----Mg~Ai~~gl~~~g~~~-~~~I~v~~--------~~~e~~~~l~~~~g~~~----~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGN-----MGEAILSGLLKSGALP-PEEIIVTN--------RSEEKRAALAAEYGVVT----TTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCH-----HHHHHHHHHHhcCCCC-cceEEEeC--------CCHHHHHHHHHHcCCcc----cCcHHHHHhh
Confidence 46899999998 6777777777432122 12333222 22233335778888873 1111234566
Q ss_pred ccEEEEecCC-cHHHH
Q psy10839 96 FDYIIATDET-DLSFL 110 (232)
Q Consensus 96 aDlII~Md~~-~~~~L 110 (232)
+|+||.--+. +...+
T Consensus 63 advv~LavKPq~~~~v 78 (266)
T COG0345 63 ADVVFLAVKPQDLEEV 78 (266)
T ss_pred CCEEEEEeChHhHHHH
Confidence 7877666553 44444
No 83
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=50.57 E-value=15 Score=27.99 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=35.0
Q ss_pred CHHHHHHHHHcCCCCCCceeccCccccCCccEEEEecCCcH
Q psy10839 67 DPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETDL 107 (232)
Q Consensus 67 dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~~~ 107 (232)
|+.|++.+++.|++++|....|++.++..-|.||..=.-|+
T Consensus 6 H~Ga~eW~~~qG~~iD~~v~HLd~~~i~~GD~ViGtLPv~L 46 (93)
T TIGR02620 6 HSGAQEWLSQQGIQIDHFVDHLDPIDISQGDKVIGTLPVSL 46 (93)
T ss_pred cccHHHHHHhcCCccceeecccCHHHhcCCCEEEEeCCHHH
Confidence 67889999999999987666999999999999998765543
No 84
>PRK07261 topology modulation protein; Provisional
Probab=49.68 E-value=40 Score=27.60 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=47.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHH----HHHHcCCCC-CCceeccCcc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKE----RCEMYGLDT-EHVVREITKD 91 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~----vL~e~GIdl-~hrsr~lt~~ 91 (232)
++|+++....+.-|.+|+.+.+.+ |++ .+..+.--..+..... ......+ ++.+...=+ ++-...+-+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~----~~~-~i~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wIidg~~~~~~~~~ 74 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY----NCP-VLHLDTLHFQPNWQER-DDDDMIADISNFLLKHDWIIDGNYSWCLYEE 74 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh----CCC-eEecCCEEeccccccC-CHHHHHHHHHHHHhCCCEEEcCcchhhhHHH
Confidence 589999999999999999887654 221 2222111111110111 1122222 333333223 4444334345
Q ss_pred ccCCccEEEEecCCcHHHHH
Q psy10839 92 DFYKFDYIIATDETDLSFLR 111 (232)
Q Consensus 92 dl~~aDlII~Md~~~~~~L~ 111 (232)
.+..+|.||.|+-....-+.
T Consensus 75 ~l~~ad~vI~Ld~p~~~~~~ 94 (171)
T PRK07261 75 RMQEADQIIFLNFSRFNCLY 94 (171)
T ss_pred HHHHCCEEEEEcCCHHHHHH
Confidence 56789999999976544443
No 85
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=49.29 E-value=27 Score=32.42 Aligned_cols=95 Identities=15% Similarity=-0.009 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCC-----chHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCC-------C---CCCHHHHHHHHHcCC
Q psy10839 15 GKKSVLFLCRDN-----YMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVG-------K---GMDPRAKERCEMYGL 79 (232)
Q Consensus 15 ~~~~ILFVCtgN-----icRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G-------~---~~dp~Ai~vL~e~GI 79 (232)
....|=.||.|| +..+||+..+.+.+. ++|+ ++-|-|.|-.....+ . .+-.+..-..+..|+
T Consensus 52 ~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~-~~G~--~~~IlSRGYg~~~~~~~~v~~~~~~~~~GDEpllla~~~~~ 128 (338)
T PRK01906 52 VRLGVPVVVVGNVTVGGTGKTPTVIALVDALR-AAGF--TPGVVSRGYGAKIKHPTAVTPASRASDAGDEPLLIARRTDA 128 (338)
T ss_pred ccCCCCEEEECCccCCCCChHHHHHHHHHHHH-HcCC--ceEEEecCCCCCCCCCeEEcCCCChhhhCcHHHHhhhcCCC
Confidence 344566677777 479999999997765 5555 477788775431100 0 011222223333355
Q ss_pred CC--C-CceeccCc--cccCCccEEEEecCCcHHHHHH
Q psy10839 80 DT--E-HVVREITK--DDFYKFDYIIATDETDLSFLRL 112 (232)
Q Consensus 80 dl--~-hrsr~lt~--~dl~~aDlII~Md~~~~~~L~~ 112 (232)
++ + .|.+.... .....+|+||.-|.-|+..|.+
T Consensus 129 ~V~V~~dR~~aa~~l~~~~~~~dviIlDDGfQH~~L~R 166 (338)
T PRK01906 129 PVWVCPDRVAAAQALLAAHPGVDVIVSDDGLQHYRLAR 166 (338)
T ss_pred eEEEeCcHHHHHHHHHHhCCCCCEEEECCCCccchhcC
Confidence 54 2 33332221 1123588888888766655543
No 86
>PRK08118 topology modulation protein; Reviewed
Probab=48.93 E-value=30 Score=28.28 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCC-CCCC-HHHHHHHHH----cCCCC-CCceecc
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVG-KGMD-PRAKERCEM----YGLDT-EHVVREI 88 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G-~~~d-p~Ai~vL~e----~GIdl-~hrsr~l 88 (232)
|++|+++..+.+.-|.+|..+.+.+- + .+.+-+..-+..| ...+ ....+.+++ .+.=+ ++.++.+
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~----~----~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~ 72 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLN----I----PVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTM 72 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC----C----CceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHH
Confidence 46899999999999999998887763 2 2222221111111 1122 233333332 23323 4444444
Q ss_pred CccccCCccEEEEecCCc
Q psy10839 89 TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 89 t~~dl~~aDlII~Md~~~ 106 (232)
. ..+..+|+||.++-..
T Consensus 73 ~-~~l~~~d~vi~Ld~p~ 89 (167)
T PRK08118 73 D-IRLNAADTIIFLDIPR 89 (167)
T ss_pred H-HHHHhCCEEEEEeCCH
Confidence 3 3356799999998653
No 87
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=48.28 E-value=22 Score=26.89 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.+...||..+-.+|+.+ |. .++.+..+|+..|
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~----G~-~~v~~l~GG~~~W 118 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF----GH-ENVRVLDGGLQAW 118 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc----CC-CCEEEecCCHHHH
Confidence 35689999987666787776666554 44 4678888887665
No 88
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=48.17 E-value=18 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCC--CCceeccCccccCCccEEEEecC
Q psy10839 69 RAKERCEMYGLDT--EHVVREITKDDFYKFDYIIATDE 104 (232)
Q Consensus 69 ~Ai~vL~e~GIdl--~hrsr~lt~~dl~~aDlII~Md~ 104 (232)
.+.++|+++||+. .|..-.=-...+..+|+||+..+
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~ 43 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTH 43 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECcc
Confidence 4567888899876 34221111334457899999975
No 89
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=47.60 E-value=1.1e+02 Score=27.19 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=47.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKF 96 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~a 96 (232)
|+|.||..||... +||..+++. |. .+.|.. .++...+.+.+.|......+..+-. ..+.+
T Consensus 1 m~Ig~IGlG~mG~-~mA~~L~~~-----g~--~v~v~d-----------r~~~~~~~~~~~g~~~~~s~~~~~~-~~~~a 60 (299)
T PRK12490 1 MKLGLIGLGKMGG-NMAERLRED-----GH--EVVGYD-----------VNQEAVDVAGKLGITARHSLEELVS-KLEAP 60 (299)
T ss_pred CEEEEEcccHHHH-HHHHHHHhC-----CC--EEEEEE-----------CCHHHHHHHHHCCCeecCCHHHHHH-hCCCC
Confidence 3799999999875 788777642 21 233221 3455556667777654222222111 11236
Q ss_pred cEEEEecCCc--HHHH-HHhCCCCCCccEEE
Q psy10839 97 DYIIATDETD--LSFL-RLEAPPDSSAQLVK 124 (232)
Q Consensus 97 DlII~Md~~~--~~~L-~~~~P~~~~~Kv~l 124 (232)
|+||++-... .+.+ ....|....+++++
T Consensus 61 dvVi~~vp~~~~~~~v~~~i~~~l~~g~ivi 91 (299)
T PRK12490 61 RTIWVMVPAGEVTESVIKDLYPLLSPGDIVV 91 (299)
T ss_pred CEEEEEecCchHHHHHHHHHhccCCCCCEEE
Confidence 8888887653 3343 33344322345544
No 90
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=47.28 E-value=58 Score=29.82 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=46.8
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCC--ceeccCc
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEH--VVREITK 90 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~h--rsr~lt~ 90 (232)
+|.+.+|.+|.+||+.+-- +..+++ . +++++. ++.. ..++....+..+++|+...+ .-.-+..
T Consensus 1 ~m~klrVAIIGtG~IGt~h-m~~l~~----~----~~velv--AVvd----id~es~gla~A~~~Gi~~~~~~ie~LL~~ 65 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDL-MIKILR----S----EHLEPG--AMVG----IDPESDGLARARRLGVATSAEGIDGLLAM 65 (302)
T ss_pred CCCCCeEEEEcCcHHHHHH-HHHHhc----C----CCcEEE--EEEe----CChhhHHHHHHHHcCCCcccCCHHHHHhC
Confidence 4678899999999998743 333333 1 234443 3322 11222344567789988632 2333444
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.++.+.|+|+..+..
T Consensus 66 ~~~~dIDiVf~AT~a 80 (302)
T PRK08300 66 PEFDDIDIVFDATSA 80 (302)
T ss_pred cCCCCCCEEEECCCH
Confidence 567789999998864
No 91
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.98 E-value=1.1e+02 Score=28.13 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCC-CCCHHHHHHHHHcCCCC-C-Ccee--ccCc
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGK-GMDPRAKERCEMYGLDT-E-HVVR--EITK 90 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~-~~dp~Ai~vL~e~GIdl-~-hrsr--~lt~ 90 (232)
++||+|..|.+ +|.-.|+.++. +|. +-+.|.+--=.+...|. -..+.+.+++.++||++ . ...+ .+-+
T Consensus 1 ~mkivF~GTp~-----fa~~~L~~L~~-~~~-eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~ 73 (307)
T COG0223 1 MMRIVFFGTPE-----FAVPSLEALIE-AGH-EIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLE 73 (307)
T ss_pred CcEEEEEcCch-----hhHHHHHHHHh-CCC-ceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHH
Confidence 57999998864 67778888875 222 33445544433332222 34456667778899986 2 2222 1222
Q ss_pred cc-cCCccEEEEecCCc
Q psy10839 91 DD-FYKFDYIIATDETD 106 (232)
Q Consensus 91 ~d-l~~aDlII~Md~~~ 106 (232)
+. .-++|+||++.-.+
T Consensus 74 ~l~~l~~D~ivvvayG~ 90 (307)
T COG0223 74 ELAALDPDLIVVVAYGQ 90 (307)
T ss_pred HHhccCCCEEEEEehhh
Confidence 11 12689999998654
No 92
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=46.91 E-value=25 Score=30.43 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCch--HHHHHHHHHHHHHHhcCCCCcEEEEEee-eccCCCCCCCCHHHHHHHHHcCCCC--C-Cceecc
Q psy10839 15 GKKSVLFLCRDNYM--RSPMIKSLFKEMLAMANQTNEWIVESAG-IGWWDVGKGMDPRAKERCEMYGLDT--E-HVVREI 88 (232)
Q Consensus 15 ~~~~ILFVCtgNic--RSpmAEailr~l~~~~gl~~~i~V~SAG-~~~~~~G~~~dp~Ai~vL~e~GIdl--~-hrsr~l 88 (232)
..-+|.=|=||+.| =.-|.+.-+.++.......+-+-|+|+| +.. |.+|...+.+.=.=||. + ..|+..
T Consensus 63 ~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~-----~~sp~L~d~~~v~VidvteGe~~P~K~ 137 (202)
T COG0378 63 PGEPIIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFIESVGNLVC-----PFSPDLGDHLRVVVIDVTEGEDIPRKG 137 (202)
T ss_pred CCCeeEEeccCCccCCcHHHHHHHHHHHhhcCCcCCEEEEecCcceec-----ccCcchhhceEEEEEECCCCCCCcccC
Confidence 55678889999999 7788888888887654333678999999 443 46666554444444666 2 688888
Q ss_pred CccccCCccEEEEec
Q psy10839 89 TKDDFYKFDYIIATD 103 (232)
Q Consensus 89 t~~dl~~aDlII~Md 103 (232)
.+..+. +|++|.--
T Consensus 138 gP~i~~-aDllVInK 151 (202)
T COG0378 138 GPGIFK-ADLLVINK 151 (202)
T ss_pred CCceeE-eeEEEEeh
Confidence 888877 99988754
No 93
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=46.83 E-value=40 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQ 46 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl 46 (232)
+..++||+|..|..-=|+.+++.+-++.|+
T Consensus 68 k~~I~VC~g~~C~~~Ga~~v~~~l~~~L~i 97 (148)
T TIGR01958 68 RYHLQVCTNVPCALRGSEALLKYLENKLGI 97 (148)
T ss_pred CEEEEEcCCchhhhcCHHHHHHHHHHHhCC
Confidence 579999999999999999999888877664
No 94
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=46.15 E-value=53 Score=29.85 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=41.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHH-HHHHHHHcCCCCCCceeccCccccCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPR-AKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~-Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
++|-||.+||-. +|||..+++. |. .+.|.. -+|. +.+.+.+.|......+ .+....
T Consensus 1 ~kIafIGLG~MG-~pmA~~L~~a-----G~--~v~v~~-----------r~~~ka~~~~~~~Ga~~a~s~----~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMG-SPMAANLLKA-----GH--EVTVYN-----------RTPEKAAELLAAAGATVAASP----AEAAAE 57 (286)
T ss_pred CeEEEEcCchhh-HHHHHHHHHC-----CC--EEEEEe-----------CChhhhhHHHHHcCCcccCCH----HHHHHh
Confidence 489999999865 5676544432 22 233322 2233 3777888887763222 356789
Q ss_pred ccEEEEecCC
Q psy10839 96 FDYIIATDET 105 (232)
Q Consensus 96 aDlII~Md~~ 105 (232)
+|+||+|=..
T Consensus 58 aDvVitmv~~ 67 (286)
T COG2084 58 ADVVITMLPD 67 (286)
T ss_pred CCEEEEecCC
Confidence 9999999643
No 95
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=45.85 E-value=13 Score=33.29 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=29.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+|-|+=.||+.-|+|++-++.+.+.. .++++...|+.+.
T Consensus 3 KiGiiKlGNig~s~~idl~LDErAdR----edI~vrv~gsGaK 41 (276)
T PF01993_consen 3 KIGIIKLGNIGTSVVIDLLLDERADR----EDIDVRVVGSGAK 41 (276)
T ss_dssp EEEEEEES--HHHHHTTGGGSTTS------SSEEEEEEEEET-
T ss_pred EEEEEEecccchHHHHHHHHHhhhcc----CCceEEEeccCCC
Confidence 78999999999999999999877653 5788888888663
No 96
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.57 E-value=49 Score=31.79 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=16.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLF 37 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEail 37 (232)
..++|+|+..|.+.+| +|+.+.
T Consensus 6 ~~~~i~v~G~G~sG~s-~a~~L~ 27 (498)
T PRK02006 6 QGPMVLVLGLGESGLA-MARWCA 27 (498)
T ss_pred CCCEEEEEeecHhHHH-HHHHHH
Confidence 3568999999999988 665443
No 97
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=44.29 E-value=61 Score=29.95 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCchHHHHH----HHH------HHHHHH-hcCCCCcEEEEEeeeccCCCCC---------CCCHHHHHHH
Q psy10839 15 GKKSVLFLCRDNYMRSPMI----KSL------FKEMLA-MANQTNEWIVESAGIGWWDVGK---------GMDPRAKERC 74 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmA----Eai------lr~l~~-~~gl~~~i~V~SAG~~~~~~G~---------~~dp~Ai~vL 74 (232)
..++|.+|-++=.-|.... |.+ +.+.++ ..|+. .-+|-=+|+-|. .|+ .+=..|++.+
T Consensus 151 ~~LrV~lvT~HipL~~v~~~it~~~i~~~i~~~~~~l~~~~gi~-~PrIaV~gLNPH-AGE~G~~G~EE~~iI~PAI~~~ 228 (320)
T TIGR00557 151 PGLRVALATTHIPLKDVPAALTPELLVEKLRILHADLRRDFGIA-RPRIAVAGLNPH-AGEGGHLGREEIDIIIPALEAL 228 (320)
T ss_pred CCeEEEEEeccccHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCC-CCCEEEEecCCC-CCCCCCCcHHHHHHHHHHHHHH
Confidence 3477888866654443322 112 222233 33553 345677898874 443 2445678899
Q ss_pred HHcCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 75 EMYGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 75 ~e~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
++.|+++ + ..+-.+ ......+||.||+|-..|
T Consensus 229 ~~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 263 (320)
T TIGR00557 229 RAEGIDLIGPLPADTLFHPAALAKYDAVLAMYHDQ 263 (320)
T ss_pred HHCCCcccCCCCchhhcccccccCCCEEEECcccc
Confidence 9999998 4 555544 445567899999998764
No 98
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=43.77 E-value=1.2e+02 Score=27.50 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccee
Q psy10839 152 INALDDIIHRGYWYLRGFLDTLGIEVPETTTLKI 185 (232)
Q Consensus 152 fe~~~~~~~~I~~~v~~ll~~L~~~l~~~~~~~~ 185 (232)
-++- +++|.+.++-|++.+++.-++--||+|
T Consensus 218 ~~ef---~~~l~~~l~~~LP~y~~egks~lTIaI 248 (286)
T COG1660 218 VEEF---YEKLRDLLEFWLPRYEKEGKSYLTIAI 248 (286)
T ss_pred HHHH---HHHHHHHHHHHhHHHHhcCCeEEEEEE
Confidence 4566 899999999999999888777666665
No 99
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=43.10 E-value=25 Score=26.25 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.+. -||..+-.+|+.+ |. +++.+.-+|+..|
T Consensus 77 ~~~~iv~yc~~g-~~s~~~~~~l~~~----G~-~~v~~l~GG~~~W 116 (118)
T cd01449 77 PDKPVIVYCGSG-VTACVLLLALELL----GY-KNVRLYDGSWSEW 116 (118)
T ss_pred CCCCEEEECCcH-HHHHHHHHHHHHc----CC-CCeeeeCChHHHh
Confidence 456899999874 5888876666443 44 3566666776554
No 100
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=42.85 E-value=34 Score=24.47 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+..+|+|+|.++ -||.+|...|+ +.|. ++.+..+|+..|
T Consensus 50 ~~~~vvl~c~~g-~~a~~~a~~L~----~~G~--~v~~l~GG~~~w 88 (90)
T cd01524 50 KDKEIIVYCAVG-LRGYIAARILT----QNGF--KVKNLDGGYKTY 88 (90)
T ss_pred CCCcEEEEcCCC-hhHHHHHHHHH----HCCC--CEEEecCCHHHh
Confidence 346799999753 56777655554 4455 578888887765
No 101
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=42.51 E-value=43 Score=24.20 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHH-HHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSL-FKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEai-lr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
....|+|.|. .--||.++.+. ....+.+.|.. ++.+.-+|+..|
T Consensus 66 ~~~~iv~yc~-~~~~~~~~~~~~~~~~l~~~g~~-~v~~l~GG~~~w 110 (113)
T PF00581_consen 66 KDKDIVFYCS-SGWRSGSAAAARVAWILKKLGFK-NVYILDGGFEAW 110 (113)
T ss_dssp TTSEEEEEES-SSCHHHHHHHHHHHHHHHHTTTS-SEEEETTHHHHH
T ss_pred ccccceeeee-cccccchhHHHHHHHHHHHcCCC-CEEEecChHHHH
Confidence 4568999994 34455555555 33335555764 788888887654
No 102
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=42.00 E-value=33 Score=24.78 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCchH-HHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMR-SPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicR-SpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+|+|.+..+. |..|-..|+ +.|. .++.+-.+|+..|
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~----~~G~-~~v~~l~GG~~~W 90 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLS----ELGY-TDVALLEGGLQGW 90 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHH----HcCc-cCEEEccCCHHHH
Confidence 55799999865443 455544443 3454 4677778887655
No 103
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=41.73 E-value=55 Score=26.62 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=26.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQ 46 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl 46 (232)
+.+++||+|-.|+.-=|+.+++++-++.|+
T Consensus 74 k~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i 103 (154)
T PRK07539 74 RHVIQVCTSTPCWLRGGEAILAALKKKLGI 103 (154)
T ss_pred CEEEEEcCCchHHHCCHHHHHHHHHHHhCC
Confidence 679999999999999999999988876653
No 104
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=41.63 E-value=74 Score=29.56 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCchHHHHH----HHH------HHHHHHhcCCCCcEEEEEeeeccCCCCCC---------CCHHHHHHHHH
Q psy10839 16 KKSVLFLCRDNYMRSPMI----KSL------FKEMLAMANQTNEWIVESAGIGWWDVGKG---------MDPRAKERCEM 76 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmA----Eai------lr~l~~~~gl~~~i~V~SAG~~~~~~G~~---------~dp~Ai~vL~e 76 (232)
.++|..|-++=.-|.... |.+ +.+.++..|+. .-+|-=+|+-|. .|+. +=..|++.+++
T Consensus 160 ~LrV~lvT~HipL~~V~~~it~e~i~~~i~~~~~~l~~~gi~-~PrIaV~GLNPH-AGE~G~~G~EE~~iI~PAI~~~~~ 237 (332)
T PRK03743 160 NLRVFFLTRHVSLKKACDYVTKERVLDYIQRCTKALEKLGIK-NPKIAVAGLNPH-SGEHGLFGDEEVDEIIPAVEAAQE 237 (332)
T ss_pred CcEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeeCCC-CCCCCCCcHHHHHHHHHHHHHHHH
Confidence 467777755544443321 112 22333344653 335677899874 3431 22457788899
Q ss_pred cCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 77 YGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 77 ~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
.|+++ + ..+-.+ ......+||.||+|-..|
T Consensus 238 ~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 270 (332)
T PRK03743 238 MGINVEGPVPADSVFHLALQGRYDAVLSLYHDQ 270 (332)
T ss_pred CCCcccCCCCchhhcccccccCCCEEEEccccc
Confidence 99998 4 555544 455567899999998764
No 105
>PRK05320 rhodanese superfamily protein; Provisional
Probab=41.58 E-value=27 Score=30.96 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+.++|+++|++. -||..|..+|++. |. +++..-.+|+..|
T Consensus 174 kdk~IvvyC~~G-~Rs~~Aa~~L~~~----Gf-~~V~~L~GGi~~w 213 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCEKAAIHMQEV----GI-DNVYQLEGGILKY 213 (257)
T ss_pred CCCeEEEECCCC-HHHHHHHHHHHHc----CC-cceEEeccCHHHH
Confidence 457899999997 6899998888654 55 3566667887665
No 106
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=41.33 E-value=39 Score=31.07 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=53.1
Q ss_pred cCCCeEEEEcCCC-----chHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCC-----------CCCHHHHHHHHHc
Q psy10839 14 EGKKSVLFLCRDN-----YMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGK-----------GMDPRAKERCEMY 77 (232)
Q Consensus 14 ~~~~~ILFVCtgN-----icRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~-----------~~dp~Ai~vL~e~ 77 (232)
.....|-.||.|| +..+||.+++.+.+. ++|+ ++-|-|.|-.....|. .+-.+.....+..
T Consensus 30 ~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~-~~G~--~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~ 106 (326)
T PF02606_consen 30 SYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQ-ARGY--RPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKL 106 (326)
T ss_pred cCCCCCcEEEEcccccCCCCchHHHHHHHHHHH-hcCC--ceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhc
Confidence 4455666777766 578999999998875 4455 3677777755321110 0113344444555
Q ss_pred CCCC--C-CceeccCc--cccCCccEEEEecCCcHHHHH
Q psy10839 78 GLDT--E-HVVREITK--DDFYKFDYIIATDETDLSFLR 111 (232)
Q Consensus 78 GIdl--~-hrsr~lt~--~dl~~aDlII~Md~~~~~~L~ 111 (232)
++.+ + .|.+.... +... +|+||.-|.-|+..|.
T Consensus 107 ~~~V~V~~dR~~~~~~~~~~~~-~dviilDDGfQh~~L~ 144 (326)
T PF02606_consen 107 PVPVIVGPDRVAAARAALKEFP-ADVIILDDGFQHRRLK 144 (326)
T ss_pred CCcEEEeCcHHHHHHHHHHHCC-CCEEEEcCCccccccc
Confidence 6444 2 34443331 2222 7888777776665553
No 107
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=41.24 E-value=34 Score=28.30 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCchHH------HHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 16 KKSVLFLCRDNYMRS------PMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 16 ~~~ILFVCtgNicRS------pmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
.++|+.+|.||.-++ -.||.+-+.... ..++.|..||+.+
T Consensus 1 ~~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~----~~~v~vid~Gt~~ 46 (160)
T COG0680 1 KMRILILGVGNILMGDDGFGVRVAEKLKKRYKP----PENVEVIDGGTAG 46 (160)
T ss_pred CCeEEEEeeCCcccccCcccHHHHHHHHHhcCC----CCCeEEEEcCCCc
Confidence 368999999999886 566666655542 2368999999876
No 108
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=41.17 E-value=38 Score=24.66 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+++|.+.. ||..+...|+. .|. +++.+.-+|+.+|
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~~L~~----~G~-~~v~~l~GG~~a~ 103 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAAFLVK----CGV-PRVCILDGGINAL 103 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHHHHHH----cCC-CCEEEEeCcHHHh
Confidence 457999997755 67655554543 455 4677788887665
No 109
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=41.11 E-value=75 Score=30.11 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLF 37 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEail 37 (232)
+.++|+||..|.+.+|.+|..+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~ 28 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLL 28 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHH
Confidence 34689999999999999887654
No 110
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=40.98 E-value=1.1e+02 Score=26.84 Aligned_cols=84 Identities=8% Similarity=0.098 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHh-cCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccC-----
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAM-ANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREIT----- 89 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~-~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt----- 89 (232)
-.+|.|++.|+.+=.-....+++.+.+. .|. .++|.. |+++ ...++...|+++.+....+.
T Consensus 92 g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~--~veivP-GIss----------~~a~aa~~g~pL~~~~e~l~ii~~~ 158 (238)
T PRK05948 92 GEDVAFACEGDVSFYSTFTYLAQTLQELYPQV--AIQTIP-GVCS----------PLAAAAALGIPLTLGSQRLAILPAL 158 (238)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhcCCCC--CEEEEC-ChhH----------HHHHHHHhCCCeecCCCeEEEEcCC
Confidence 4689999999999877777776666532 233 355543 4433 34566778999854333321
Q ss_pred ------ccccCCccEEEEecCCc-HHHHHH
Q psy10839 90 ------KDDFYKFDYIIATDETD-LSFLRL 112 (232)
Q Consensus 90 ------~~dl~~aDlII~Md~~~-~~~L~~ 112 (232)
.+.+.++|.||.|.... .+.+.+
T Consensus 159 ~~~~~l~~~l~~~~~vVlmk~~~~~~~i~~ 188 (238)
T PRK05948 159 YHLEELEQALTWADVVVLMKVSSVYPQVWQ 188 (238)
T ss_pred CCHHHHHHHHhCCCEEEEEECCccHHHHHH
Confidence 12356789999999765 355544
No 111
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=40.52 E-value=37 Score=27.34 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=32.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCC-------CCcEEEEEeeec
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQ-------TNEWIVESAGIG 58 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl-------~~~i~V~SAG~~ 58 (232)
+..++||+|..|..-=|+.+++.+-++-|+ .+.+.+...+--
T Consensus 65 k~~I~VC~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~Cl 113 (145)
T PF01257_consen 65 KHHIRVCTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCL 113 (145)
T ss_dssp SEEEEEE-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSS
T ss_pred CcEEEeCCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCc
Confidence 579999999999999999999887766542 356777776653
No 112
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=40.42 E-value=75 Score=28.33 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=40.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKF 96 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~a 96 (232)
++|.||..||.. ++||..++++ |. .+.+.+ .++...+.+.+.|+.....+ .+.+.++
T Consensus 2 ~~Ig~IGlG~mG-~~mA~~l~~~-----G~--~V~v~d-----------~~~~~~~~~~~~g~~~~~s~----~~~~~~a 58 (296)
T PRK15461 2 AAIAFIGLGQMG-SPMASNLLKQ-----GH--QLQVFD-----------VNPQAVDALVDKGATPAASP----AQAAAGA 58 (296)
T ss_pred CeEEEEeeCHHH-HHHHHHHHHC-----CC--eEEEEc-----------CCHHHHHHHHHcCCcccCCH----HHHHhcC
Confidence 489999999987 4677776532 21 233221 34555666667776432111 1346788
Q ss_pred cEEEEecCCc
Q psy10839 97 DYIIATDETD 106 (232)
Q Consensus 97 DlII~Md~~~ 106 (232)
|+||++-...
T Consensus 59 DvVi~~vp~~ 68 (296)
T PRK15461 59 EFVITMLPNG 68 (296)
T ss_pred CEEEEecCCH
Confidence 9999887653
No 113
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=40.35 E-value=26 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|+|.++. ||..|...|+.+ |....+.+.-+|+..|
T Consensus 71 ~~~~ivv~C~~G~-rs~~aa~~L~~~----G~~~~v~~l~GG~~~W 111 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQTAVRKLKEL----GLERFVRDIIGGLKAW 111 (122)
T ss_pred CCCcEEEECCCCC-cHHHHHHHHHHc----CCccceeeecchHHHH
Confidence 4567999997764 888877665544 5523566667777665
No 114
>PRK01415 hypothetical protein; Validated
Probab=39.71 E-value=29 Score=30.85 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+.++|++.|+|. -||-.|..+|++. |. .++..-.+|+..|
T Consensus 170 k~k~Iv~yCtgG-iRs~kAa~~L~~~----Gf-~~Vy~L~GGi~~w 209 (247)
T PRK01415 170 KGKKIAMVCTGG-IRCEKSTSLLKSI----GY-DEVYHLKGGILQY 209 (247)
T ss_pred CCCeEEEECCCC-hHHHHHHHHHHHc----CC-CcEEEechHHHHH
Confidence 457899999988 6899998887654 44 3566677888766
No 115
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=39.64 E-value=67 Score=29.25 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=43.5
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCC--CceeccC
Q psy10839 15 GKKSVLFLCRD---NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTE--HVVREIT 89 (232)
Q Consensus 15 ~~~~ILFVCtg---NicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~--hrsr~lt 89 (232)
...+|.||+-+ |++||-+.-+ .. .| +.|.=++-. |..+++..++.+++.|..+. +-+
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~--a~----~g----~~v~~~~P~----~~~~~~~~~~~~~~~G~~v~~~~d~---- 210 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEAL--TR----FG----VEVYLISPE----ELRMPKEILEELKAKGIKVRETESL---- 210 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHH--HH----cC----CEEEEECCc----cccCCHHHHHHHHHcCCEEEEECCH----
Confidence 45799999995 8899976532 11 12 456655533 33355777777777776541 111
Q ss_pred ccccCCccEEEEe
Q psy10839 90 KDDFYKFDYIIAT 102 (232)
Q Consensus 90 ~~dl~~aDlII~M 102 (232)
.+.++.+|+|++.
T Consensus 211 ~~a~~~aDvvyt~ 223 (301)
T TIGR00670 211 EEVIDEADVLYVT 223 (301)
T ss_pred HHHhCCCCEEEEC
Confidence 2347899988884
No 116
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=39.35 E-value=1.4e+02 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.012 Sum_probs=47.4
Q ss_pred ccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCc
Q psy10839 11 FLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90 (232)
Q Consensus 11 ~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~ 90 (232)
|+..+.++||+|.-|++. ..=++.+++ . +..+.|.|=- +++...+..++..|. +..+.+++
T Consensus 20 ~l~~~~~~VLVVGGG~VA-----~RK~~~Ll~-~--gA~VtVVap~---------i~~el~~l~~~~~i~--~~~r~~~~ 80 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAA-----FIKGKTFLK-K--GCYVYILSKK---------FSKEFLDLKKYGNLK--LIKGNYDK 80 (223)
T ss_pred EEECCCCEEEEECCCHHH-----HHHHHHHHh-C--CCEEEEEcCC---------CCHHHHHHHhCCCEE--EEeCCCCh
Confidence 344446789999999765 332333332 2 3568887622 556655443333333 34567788
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.|+..+++||+-++.
T Consensus 81 ~dl~g~~LViaATdD 95 (223)
T PRK05562 81 EFIKDKHLIVIATDD 95 (223)
T ss_pred HHhCCCcEEEECCCC
Confidence 899999999999764
No 117
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=38.83 E-value=43 Score=30.28 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
...||-.|.. ..+.+++++..+ .| ..+.|.-.-+.|...|. +....|.+.||+....+-.--...+.+
T Consensus 110 g~~ILTh~~S-----~tv~~~l~~A~~-~g--k~~~V~v~EsrP~~qG~----~la~eL~~~GI~vtlI~Dsa~~~~m~~ 177 (275)
T PRK08335 110 GDVIITHSFS-----SAVLEILKTAKR-KG--KRFKVILTESAPDYEGL----ALANELEFLGIEFEVITDAQLGLFAKE 177 (275)
T ss_pred CCEEEEECCc-----HHHHHHHHHHHH-cC--CceEEEEecCCCchhHH----HHHHHHHHCCCCEEEEeccHHHHHHHh
Confidence 3468887754 567777766553 33 35889988888864443 347788899998621111100112455
Q ss_pred ccEEEEecC
Q psy10839 96 FDYIIATDE 104 (232)
Q Consensus 96 aDlII~Md~ 104 (232)
.|.||+=.+
T Consensus 178 vd~VivGAD 186 (275)
T PRK08335 178 ATLALVGAD 186 (275)
T ss_pred CCEEEECcc
Confidence 777776443
No 118
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=37.79 E-value=51 Score=26.36 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=24.7
Q ss_pred EEEEcCCCchHH------HHHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 19 VLFLCRDNYMRS------PMIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 19 ILFVCtgNicRS------pmAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
+|++|.||.-|. -.||.+- ++..++.+.+..+|+.+
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~-----~~~~~~~v~v~d~gt~~ 42 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCA-----AAPKEENWVVINAGTVP 42 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHH-----hccCCCCEEEEECCCCh
Confidence 578999999997 4444443 22335578888888865
No 119
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=37.51 E-value=45 Score=25.34 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+++|.++ .||..|...|+ +.|. .++.+ -+|+..|
T Consensus 60 ~~~IVlyC~~G-~rS~~aa~~L~----~~G~-~~v~~-~GG~~~~ 97 (104)
T PRK10287 60 NDTVKLYCNAG-RQSGQAKEILS----EMGY-THAEN-AGGLKDI 97 (104)
T ss_pred CCeEEEEeCCC-hHHHHHHHHHH----HcCC-CeEEe-cCCHHHH
Confidence 35699999755 67777765554 3455 35555 3777665
No 120
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=37.50 E-value=26 Score=22.15 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHcCCCC
Q psy10839 66 MDPRAKERCEMYGLDT 81 (232)
Q Consensus 66 ~dp~Ai~vL~e~GIdl 81 (232)
+.|.|.+.++|+|||+
T Consensus 5 asP~ar~la~e~gidl 20 (39)
T PF02817_consen 5 ASPAARKLAAELGIDL 20 (39)
T ss_dssp CSHHHHHHHHHTT--G
T ss_pred cCHHHHHHHHHcCCCc
Confidence 6899999999999998
No 121
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.86 E-value=86 Score=29.75 Aligned_cols=70 Identities=10% Similarity=-0.068 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC--CCceeccCccc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT--EHVVREITKDD 92 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl--~hrsr~lt~~d 92 (232)
..++|+||..|.+.++ +|+.+.+ +|. .+.+.-. .+ ........+.|++.|+.+ ++... .
T Consensus 15 ~~~~v~viG~G~~G~~-~A~~L~~-----~G~--~V~~~d~--~~----~~~~~~~~~~l~~~gv~~~~~~~~~-----~ 75 (480)
T PRK01438 15 QGLRVVVAGLGVSGFA-AADALLE-----LGA--RVTVVDD--GD----DERHRALAAILEALGATVRLGPGPT-----L 75 (480)
T ss_pred CCCEEEEECCCHHHHH-HHHHHHH-----CCC--EEEEEeC--Cc----hhhhHHHHHHHHHcCCEEEECCCcc-----c
Confidence 3568999999999998 5765542 232 2433211 11 112234456688899887 44332 3
Q ss_pred cCCccEEEEec
Q psy10839 93 FYKFDYIIATD 103 (232)
Q Consensus 93 l~~aDlII~Md 103 (232)
...+|+||.-.
T Consensus 76 ~~~~D~Vv~s~ 86 (480)
T PRK01438 76 PEDTDLVVTSP 86 (480)
T ss_pred cCCCCEEEECC
Confidence 35689887654
No 122
>PRK07579 hypothetical protein; Provisional
Probab=36.60 E-value=75 Score=28.27 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
|++|+|+ +.| +.+-..|+.+.+.++ .-++.+..-|++...-+.++ -.. ..+++|+.+... +.+++
T Consensus 1 ~k~i~~~-~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~----~~~~~ 65 (245)
T PRK07579 1 MKTILVL-TDN----VHAHALAVDLIARKN-DMDVDYFCSFKSQTSFAKEI-YQS----PIKQLDVAERVA----EIVER 65 (245)
T ss_pred CceEEEE-ccc----HHHHHHHHHHHhhcc-CcceEEEEeccCCccccccc-ccc----cccCcchhhhHH----hhhcC
Confidence 5789998 444 567777777776654 33577777777653111110 000 155666533322 34677
Q ss_pred ccEEEEecCC
Q psy10839 96 FDYIIATDET 105 (232)
Q Consensus 96 aDlII~Md~~ 105 (232)
+|+||++.-.
T Consensus 66 ~DliVvvayg 75 (245)
T PRK07579 66 YDLVLSFHCK 75 (245)
T ss_pred CCEEEEchhh
Confidence 9999999864
No 123
>PRK00211 sulfur relay protein TusC; Validated
Probab=36.30 E-value=1.3e+02 Score=23.44 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEE--EEeeec-------cCCCCCCCCHHHHHHHHHcCCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIV--ESAGIG-------WWDVGKGMDPRAKERCEMYGLD 80 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V--~SAG~~-------~~~~G~~~dp~Ai~vL~e~GId 80 (232)
|++|+||-+..-.-|.-+-.-++-.+...++...+.| ..-|+- |...|..-.....+.|..+|+.
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~DgV~~l~~~q~p~~i~~kn~~~~~~~L~~ydi~ 74 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQQPDAILARDYIATFKLLPLYDIE 74 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEhhhHHHHhcCCCcccccccCHHHHHHHHHhCCCC
Confidence 4679999887766665555555544444433333433 344443 3222333455666788888876
No 124
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=36.27 E-value=65 Score=26.00 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCchHHH--HHHHHHHHHHH-hcCCCCcEEEEEeeecc
Q psy10839 16 KKSVLFLCRDNYMRSP--MIKSLFKEMLA-MANQTNEWIVESAGIGW 59 (232)
Q Consensus 16 ~~~ILFVCtgNicRSp--mAEailr~l~~-~~gl~~~i~V~SAG~~~ 59 (232)
+++||++|.||.-|.= ..=.+.+.+.+ ...+++++++..+|+..
T Consensus 2 ~~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~ 48 (153)
T TIGR00130 2 NHEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGA 48 (153)
T ss_pred CceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcH
Confidence 4689999999999972 22222333322 12335569999999854
No 125
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=35.86 E-value=44 Score=30.35 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
...||-.| +|-.+++++++..++ | .++.|.-.-+.|...| ......|.+.||+....+-.--...+.+
T Consensus 116 g~~ILT~~-----~S~tv~~~l~~a~~~-~--~~f~V~v~EsrP~~~G----~~~a~~L~~~gI~vtlI~Dsa~~~~m~~ 183 (301)
T TIGR00511 116 GDVVMTHC-----NSEAALSVIKTAFEQ-G--KDIEVIATETRPRKQG----HITAKELRDYGIPVTLIVDSAVRYFMKE 183 (301)
T ss_pred CCEEEEEC-----CcHHHHHHHHHHHHc-C--CcEEEEEecCCCcchH----HHHHHHHHHCCCCEEEEehhHHHHHHHh
Confidence 34678766 445667777665543 3 4588888888886434 4567888999998622111111122455
Q ss_pred ccEEEEecC
Q psy10839 96 FDYIIATDE 104 (232)
Q Consensus 96 aDlII~Md~ 104 (232)
.|.||+=.+
T Consensus 184 vd~VivGad 192 (301)
T TIGR00511 184 VDHVVVGAD 192 (301)
T ss_pred CCEEEECcc
Confidence 777776443
No 126
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=35.68 E-value=73 Score=30.09 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.7
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFK 38 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr 38 (232)
+|+||..|.+..|++|+.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~ 21 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN 21 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999987654
No 127
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.66 E-value=1.8e+02 Score=25.46 Aligned_cols=23 Identities=4% Similarity=0.005 Sum_probs=15.0
Q ss_pred ccccCCccEEEEecCCcHHHHHH
Q psy10839 90 KDDFYKFDYIIATDETDLSFLRL 112 (232)
Q Consensus 90 ~~dl~~aDlII~Md~~~~~~L~~ 112 (232)
...+.+||+||......-.++.+
T Consensus 47 ~~~l~~ADliv~~G~~lE~~~~k 69 (264)
T cd01020 47 AAKVSTADIVVYNGGGYDPWMTK 69 (264)
T ss_pred HHHHhhCCEEEEeCCCchHHHHH
Confidence 35678999999987543334433
No 128
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=35.66 E-value=33 Score=31.02 Aligned_cols=102 Identities=10% Similarity=0.080 Sum_probs=55.7
Q ss_pred cCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCcccc
Q psy10839 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDF 93 (232)
Q Consensus 14 ~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl 93 (232)
....++.++.+|...|.++ +++.. . +++ ..+.|.|..... ....+.+.-++.|+++. .-.=-++.+
T Consensus 115 ~da~~l~iiGaG~QA~~~~-~a~~~-v---~~i-~~v~v~~r~~~~------a~~f~~~~~~~~~~~v~--~~~~~~eav 180 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQL-EGMAS-V---YNP-KRIRVYSRNFDH------ARAFAERFSKEFGVDIR--PVDNAEAAL 180 (301)
T ss_pred cCCcEEEEECCcHHHHHHH-HHHHh-c---CCC-CEEEEECCCHHH------HHHHHHHHHHhcCCcEE--EeCCHHHHH
Confidence 3467899999999999987 34433 1 233 578888655322 22333222233466541 111123557
Q ss_pred CCccEEEEecCCcHHHHHHhCCCCCCccEEEeccccc
Q psy10839 94 YKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTR 130 (232)
Q Consensus 94 ~~aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~ 130 (232)
.++|+|++.+.+---.+...+-. ....|-..|.|.+
T Consensus 181 ~~aDIV~taT~s~~P~~~~~~l~-pg~hV~aiGs~~p 216 (301)
T PRK06407 181 RDADTITSITNSDTPIFNRKYLG-DEYHVNLAGSNYP 216 (301)
T ss_pred hcCCEEEEecCCCCcEecHHHcC-CCceEEecCCCCC
Confidence 89999999887542222111111 1334666666655
No 129
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=35.59 E-value=1.3e+02 Score=27.24 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=42.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCC-C--CCC-CCHHHHHHHHHcCCCC-C--Cce--ec
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD-V--GKG-MDPRAKERCEMYGLDT-E--HVV--RE 87 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~-~--G~~-~dp~Ai~vL~e~GIdl-~--hrs--r~ 87 (232)
|||+|.+++. +|-..|+.+.+. ++++.---|.+.. . |.. ..+.+.+.+.++||++ . ... ..
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~-----~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~ 70 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELRED-----NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEE 70 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhC-----CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHH
Confidence 5899997764 666777777642 2333322222210 1 111 2344677788899997 2 111 01
Q ss_pred cCccccCCccEEEEecCC
Q psy10839 88 ITKDDFYKFDYIIATDET 105 (232)
Q Consensus 88 lt~~dl~~aDlII~Md~~ 105 (232)
+..-.-.++|+||++.-.
T Consensus 71 ~~~l~~~~~Dliv~~~~~ 88 (313)
T TIGR00460 71 LPLVRELKPDVIVVVSFG 88 (313)
T ss_pred HHHHHhhCCCEEEEccch
Confidence 111111378999999854
No 130
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=35.50 E-value=77 Score=22.69 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=32.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCC-------CcEEEEEeeecc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQT-------NEWIVESAGIGW 59 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~-------~~i~V~SAG~~~ 59 (232)
+.++-||++-.|.+-=|+.+++++-++.+.. +.+.+...|-..
T Consensus 1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG 50 (80)
T cd03083 1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTG 50 (80)
T ss_pred CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceec
Confidence 3578899999999999999998887765432 246777666543
No 131
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.99 E-value=65 Score=29.04 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC---CCceecc---
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT---EHVVREI--- 88 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl---~hrsr~l--- 88 (232)
+++||.|.++|| ..-.++++++... +.+.++=+++... . +.+...++++||+. ++.....
T Consensus 88 ~~~ri~vl~Sg~---gsnl~al~~~~~~-----~~~~~~i~~visn----~--~~~~~lA~~~gIp~~~~~~~~~~~~~~ 153 (286)
T PRK06027 88 ERKRVVILVSKE---DHCLGDLLWRWRS-----GELPVEIAAVISN----H--DDLRSLVERFGIPFHHVPVTKETKAEA 153 (286)
T ss_pred cCcEEEEEEcCC---CCCHHHHHHHHHc-----CCCCcEEEEEEEc----C--hhHHHHHHHhCCCEEEeccCccccchh
Confidence 478999999999 5667788876542 2222333344332 1 23445588999997 2332111
Q ss_pred Cc---ccc--CCccEEEEecCC
Q psy10839 89 TK---DDF--YKFDYIIATDET 105 (232)
Q Consensus 89 t~---~dl--~~aDlII~Md~~ 105 (232)
+. +.+ ...|+||+..-.
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 154 EARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred HHHHHHHHHHhCCCEEEEecch
Confidence 11 112 357999999743
No 132
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.94 E-value=1.4e+02 Score=26.48 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=36.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCC--CCcEEEEEeeeccCCCCCCCCHHHHHHHH-HcCCCCCCceeccCcccc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQ--TNEWIVESAGIGWWDVGKGMDPRAKERCE-MYGLDTEHVVREITKDDF 93 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl--~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~-e~GIdl~hrsr~lt~~dl 93 (232)
++|.||..||. +.++++.+.+ .|. +..+.+.+ .++...+.+. ++|+..... ..+.+
T Consensus 3 ~~IgfIG~G~M-----G~aia~~L~~-~g~~~~~~I~v~~-----------r~~~~~~~l~~~~g~~~~~~----~~e~~ 61 (272)
T PRK12491 3 KQIGFIGCGNM-----GIAMIGGMIN-KNIVSPDQIICSD-----------LNVSNLKNASDKYGITITTN----NNEVA 61 (272)
T ss_pred CeEEEECccHH-----HHHHHHHHHH-CCCCCCceEEEEC-----------CCHHHHHHHHHhcCcEEeCC----cHHHH
Confidence 47999999984 4445555442 232 12233321 2344444444 477643111 11235
Q ss_pred CCccEEEEecC-CcHHHH
Q psy10839 94 YKFDYIIATDE-TDLSFL 110 (232)
Q Consensus 94 ~~aDlII~Md~-~~~~~L 110 (232)
.++|+||..-. .+...+
T Consensus 62 ~~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 62 NSADILILSIKPDLYSSV 79 (272)
T ss_pred hhCCEEEEEeChHHHHHH
Confidence 67888875554 344443
No 133
>KOG2004|consensus
Probab=34.93 E-value=18 Score=37.33 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=10.5
Q ss_pred CeEEEEcCCCch
Q psy10839 17 KSVLFLCRDNYM 28 (232)
Q Consensus 17 ~~ILFVCtgNic 28 (232)
.+||||||.|.-
T Consensus 553 SkVLFicTAN~i 564 (906)
T KOG2004|consen 553 SKVLFICTANVI 564 (906)
T ss_pred hheEEEEecccc
Confidence 489999999975
No 134
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=34.30 E-value=47 Score=30.30 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=45.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKF 96 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~a 96 (232)
..||-.| +|-.+++++++..+ .| ..+.|.-.-+.|...| ......|.+.||+....+-.--...+...
T Consensus 122 ~~ILT~~-----~S~tv~~~l~~A~~-~~--k~~~V~v~EsrP~~~G----~~~a~~L~~~GI~vtlI~Dsav~~~m~~v 189 (310)
T PRK08535 122 DVIMTHC-----NSSAALSVIKTAHE-QG--KDIEVIATETRPRNQG----HITAKELAEYGIPVTLIVDSAVRYFMKDV 189 (310)
T ss_pred CEEEEeC-----CcHHHHHHHHHHHH-CC--CeEEEEEecCCchhhH----HHHHHHHHHCCCCEEEEehhHHHHHHHhC
Confidence 4677765 45677777766553 33 3588888887876433 45678889999986211111001223556
Q ss_pred cEEEEecC
Q psy10839 97 DYIIATDE 104 (232)
Q Consensus 97 DlII~Md~ 104 (232)
|.||+=.+
T Consensus 190 d~VivGAd 197 (310)
T PRK08535 190 DKVVVGAD 197 (310)
T ss_pred CEEEECcc
Confidence 77776443
No 135
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=34.23 E-value=29 Score=27.66 Aligned_cols=40 Identities=15% Similarity=-0.105 Sum_probs=23.4
Q ss_pred EEEcCCCchHHHHHHHHH-HHHHHhcCCCCcEEEEEeeecc
Q psy10839 20 LFLCRDNYMRSPMIKSLF-KEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 20 LFVCtgNicRSpmAEail-r~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|++|.||.-|.=-+-++. -+.++++++++++++.-+|+.+
T Consensus 1 lViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~~ 41 (144)
T cd06068 1 LVAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIRG 41 (144)
T ss_pred CEEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCCH
Confidence 577888888764333332 1222334455668888888754
No 136
>PLN02527 aspartate carbamoyltransferase
Probab=34.22 E-value=95 Score=28.28 Aligned_cols=70 Identities=14% Similarity=-0.005 Sum_probs=42.5
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCC--CceeccCc
Q psy10839 16 KKSVLFLCRD---NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTE--HVVREITK 90 (232)
Q Consensus 16 ~~~ILFVCtg---NicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~--hrsr~lt~ 90 (232)
..+|.||+-+ |.|||-+-- +..+. +++|.=++-. |-.+++...+.+++.|..+. +-. +
T Consensus 151 g~kva~vGD~~~~rv~~Sl~~~--~~~~~-------g~~v~~~~P~----~~~~~~~~~~~~~~~g~~~~~~~d~----~ 213 (306)
T PLN02527 151 GIKVGLVGDLANGRTVRSLAYL--LAKYE-------DVKIYFVAPD----VVKMKDDIKDYLTSKGVEWEESSDL----M 213 (306)
T ss_pred CCEEEEECCCCCChhHHHHHHH--HHhcC-------CCEEEEECCC----ccCCCHHHHHHHHHcCCEEEEEcCH----H
Confidence 4799999976 578876542 11111 2455555533 33466777777777776541 111 2
Q ss_pred cccCCccEEEEe
Q psy10839 91 DDFYKFDYIIAT 102 (232)
Q Consensus 91 ~dl~~aDlII~M 102 (232)
+.++.+|+|++-
T Consensus 214 ~a~~~aDvvyt~ 225 (306)
T PLN02527 214 EVASKCDVLYQT 225 (306)
T ss_pred HHhCCCCEEEEC
Confidence 457899999983
No 137
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=34.06 E-value=70 Score=22.65 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=31.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeee
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGI 57 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~ 57 (232)
.++.||.|-+|+..=|+.++.++-++.+.. .+.+..++-
T Consensus 2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~-~v~l~~~~C 40 (72)
T cd03082 2 LTVRVCDSLSCAMAGAEELLAALEAGLGPE-GVRVVRAPC 40 (72)
T ss_pred eEEEEcCChHHHHCCHHHHHHHHHHHhCCC-eEEEEecCc
Confidence 478899999999999999999988776653 677776654
No 138
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=33.96 E-value=92 Score=28.86 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=43.1
Q ss_pred CCCeEEEEcC---CCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCcc
Q psy10839 15 GKKSVLFLCR---DNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKD 91 (232)
Q Consensus 15 ~~~~ILFVCt---gNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~ 91 (232)
...+|.||.- +|+++|.+.- +..+. +++|.=++-. |-.+++..++.+++.|..+.-.. .+ .+
T Consensus 158 ~g~kia~vGD~~~~rv~~Sl~~~--l~~~~-------g~~v~~~~P~----~~~~~~~~~~~~~~~g~~~~~~~-d~-~e 222 (338)
T PRK08192 158 DGMHIAMVGDLKFGRTVHSLSRL--LCMYK-------NVSFTLVSPK----ELAMPDYVISDIENAGHKITITD-QL-EG 222 (338)
T ss_pred CCCEEEEECcCCCCchHHHHHHH--HHHhc-------CCEEEEECCc----cccCCHHHHHHHHHcCCeEEEEc-CH-HH
Confidence 3479999999 5888887642 11111 2445544433 33356777777888775541000 01 24
Q ss_pred ccCCccEEEEe
Q psy10839 92 DFYKFDYIIAT 102 (232)
Q Consensus 92 dl~~aDlII~M 102 (232)
.++++|+|++-
T Consensus 223 a~~~aDvvyt~ 233 (338)
T PRK08192 223 NLDKADILYLT 233 (338)
T ss_pred HHccCCEEEEc
Confidence 57899999884
No 139
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=33.46 E-value=27 Score=22.02 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=5.2
Q ss_pred CeEEEEcCCC
Q psy10839 17 KSVLFLCRDN 26 (232)
Q Consensus 17 ~~ILFVCtgN 26 (232)
+|||||+|..
T Consensus 1 kkiLiV~Ts~ 10 (38)
T PF13587_consen 1 KKILIVVTSH 10 (38)
T ss_dssp SEEEEEE---
T ss_pred CeEEEEEcCc
Confidence 4778887753
No 140
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=33.39 E-value=84 Score=24.64 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhC--CCCccceeeeeccCccccccccchhhhhhhhHHHHHh
Q psy10839 137 PSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEV--PETTTLKIVTVRTSPKIKSSTWNAWRLEMSSLQALVS 214 (232)
Q Consensus 137 ~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (232)
-.++-||++.+... .. ..-...++.+++..++.. |.....++..+|..|++--.-=++=-..--||..+|+
T Consensus 29 ~~~~~~f~~~sv~~-lk------~~~~~s~~~yle~C~~~g~EP~k~~SGkf~~Ri~p~lH~~a~~aAa~qgiSLN~~v~ 101 (111)
T COG4226 29 LSGVIDFQGDSVKG-LK------KEGELSLDDYLEFCKERGIEPRKPYSGKFNLRIDPELHEAAALAAAAQGISLNTWVE 101 (111)
T ss_pred cccccCchhhhHHH-HH------HHHHhhHHHHHHHHHHcCCCCccccCceeeEecCHHHHHHHHHHHHHhcCcHHHHHH
Confidence 46788998877655 33 335556667777666544 5567789999999999877666665555566666665
Q ss_pred h
Q psy10839 215 R 215 (232)
Q Consensus 215 ~ 215 (232)
+
T Consensus 102 ~ 102 (111)
T COG4226 102 E 102 (111)
T ss_pred H
Confidence 4
No 141
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=33.34 E-value=56 Score=26.07 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHH--HHHHHHhcCCCCcEEEEEeeecc
Q psy10839 19 VLFLCRDNYMRSPMIKSL--FKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 19 ILFVCtgNicRSpmAEai--lr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|+++|.||..|.==+-++ .+.+.+..+++.++++..+|+.+
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~ 43 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG 43 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH
Confidence 589999999987222221 22222222456789999988765
No 142
>PLN02688 pyrroline-5-carboxylate reductase
Probab=33.32 E-value=1.2e+02 Score=26.25 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=38.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCC--CCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQ--TNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl--~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
|+|.||..||... +||.++++. |. +..+.|.. . .++...+.+.+.|+...... .+.+.
T Consensus 1 ~kI~~IG~G~mG~-a~a~~L~~~-----g~~~~~~i~v~~----~------r~~~~~~~~~~~g~~~~~~~----~e~~~ 60 (266)
T PLN02688 1 FRVGFIGAGKMAE-AIARGLVAS-----GVVPPSRISTAD----D------SNPARRDVFQSLGVKTAASN----TEVVK 60 (266)
T ss_pred CeEEEECCcHHHH-HHHHHHHHC-----CCCCcceEEEEe----C------CCHHHHHHHHHcCCEEeCCh----HHHHh
Confidence 5799999998764 566666543 21 11233210 1 23445566777887542111 13356
Q ss_pred CccEEEEecCC
Q psy10839 95 KFDYIIATDET 105 (232)
Q Consensus 95 ~aDlII~Md~~ 105 (232)
++|+||.+-..
T Consensus 61 ~aDvVil~v~~ 71 (266)
T PLN02688 61 SSDVIILAVKP 71 (266)
T ss_pred cCCEEEEEECc
Confidence 78988877643
No 143
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=32.90 E-value=45 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCc-----hHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 15 GKKSVLFLCRDNY-----MRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 15 ~~~~ILFVCtgNi-----cRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
....|=.||.||+ ..+||+..+.+.+. ++|+ ++-|-|.|=.
T Consensus 24 ~~~~vPVIsVGNitvGGTGKTP~v~~La~~l~-~~G~--~~~IlSRGYg 69 (311)
T TIGR00682 24 KRAPVPVVIVGNLSVGGTGKTPVVVWLAELLK-DRGL--RVGVLSRGYG 69 (311)
T ss_pred ccCCCCEEEEeccccCCcChHHHHHHHHHHHH-HCCC--EEEEECCCCC
Confidence 3344555666654 59999999997765 4554 4667776643
No 144
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=32.84 E-value=52 Score=23.75 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+|+|.+. .||..+...|+++ |.. ++.+..+|+..|
T Consensus 54 ~~~iv~~c~~g-~~s~~~~~~L~~~----g~~-~v~~l~gG~~~W 92 (99)
T cd01527 54 ANAIIFHCRSG-MRTQQNAERLAAI----SAG-EAYVLEGGLDAW 92 (99)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHc----CCc-cEEEeeCCHHHH
Confidence 46899999875 4455555445443 443 577778887665
No 145
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=31.91 E-value=36 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.7
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHH
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFK 38 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr 38 (232)
||..++|.||..||.++ .+|.++++
T Consensus 1 ~m~~~kI~iIG~G~mg~-ala~~l~~ 25 (245)
T PRK07634 1 MLKKHRILFIGAGRMAE-AIFSGLLK 25 (245)
T ss_pred CCCCCeEEEECcCHHHH-HHHHHHHh
Confidence 56788999999998774 55555543
No 146
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=31.66 E-value=1e+02 Score=22.05 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=30.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhcCCC-------CcEEEEEeeec
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQT-------NEWIVESAGIG 58 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr~l~~~~gl~-------~~i~V~SAG~~ 58 (232)
.++-||+|.+|..-=|+.+++.+-++.++. +.|.+..++--
T Consensus 2 ~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~Cl 49 (80)
T cd03081 2 HVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCL 49 (80)
T ss_pred eEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeec
Confidence 467799999999888999988887665431 34777766653
No 147
>KOG4132|consensus
Probab=31.65 E-value=96 Score=27.64 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~G 78 (232)
..-+||.| ||.-|= -|-+++. .+++.|+|+-+-....-...-.+...+|+++|
T Consensus 133 alPLLfpc-Gn~~rd----il~kkL~-----~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~ 185 (260)
T KOG4132|consen 133 ALPLLFPC-GNLRRD----ILPKKLH-----DKGIRVDSCEVYETREHPDGFKQFIHALKECG 185 (260)
T ss_pred cCceEEEc-ccchhH----HHHHHHH-----hCCceeeEEEEEeeeecccHHHHHHHHHHhcC
Confidence 34599998 787763 2334444 35789999988654222223456677778776
No 148
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.29 E-value=33 Score=25.45 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHcCCCC-CC------ceec--cCccccCCccEEEEecCC
Q psy10839 66 MDPRAKERCEMYGLDT-EH------VVRE--ITKDDFYKFDYIIATDET 105 (232)
Q Consensus 66 ~dp~Ai~vL~e~GIdl-~h------rsr~--lt~~dl~~aDlII~Md~~ 105 (232)
.-..-.+.++++|... -| .... | +..+..+|+||++++.
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l-~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRL-PSKIKKADLVIVFTDY 58 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHH-HHhcCCCCEEEEEeCC
Confidence 3344555666666665 34 2222 3 3567899999999975
No 149
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=31.23 E-value=1.4e+02 Score=29.86 Aligned_cols=77 Identities=8% Similarity=-0.008 Sum_probs=45.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCC-CCCCCCHHHHHHHHHcCCCC-CCceeccCc----
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD-VGKGMDPRAKERCEMYGLDT-EHVVREITK---- 90 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~-~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~---- 90 (232)
|||.|.++ +++|-..|+.+++ . +++|.---+.|.. .|....+.+.+.++++||++ . +..++.
T Consensus 1 mkivf~g~-----~~~a~~~l~~L~~-~----~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~--~~~~~~~~~~ 68 (660)
T PRK08125 1 MKAVVFAY-----HDIGCVGIEALLA-A----GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYA--PEDVNHPLWV 68 (660)
T ss_pred CeEEEECC-----CHHHHHHHHHHHH-C----CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEe--eCCCCcHHHH
Confidence 58999864 4788888888875 2 2344433333321 22222335677889999997 3 112211
Q ss_pred ccc--CCccEEEEecCC
Q psy10839 91 DDF--YKFDYIIATDET 105 (232)
Q Consensus 91 ~dl--~~aDlII~Md~~ 105 (232)
+.+ ...|+||++.-.
T Consensus 69 ~~l~~~~~D~iv~~~~~ 85 (660)
T PRK08125 69 ERIRELAPDVIFSFYYR 85 (660)
T ss_pred HHHHhcCCCEEEEcccc
Confidence 111 378999998753
No 150
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=31.11 E-value=1.1e+02 Score=29.37 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=43.0
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCC--CceeccCc
Q psy10839 16 KKSVLFLCRD---NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTE--HVVREITK 90 (232)
Q Consensus 16 ~~~ILFVCtg---NicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~--hrsr~lt~ 90 (232)
..+|.||+-+ |+++|-+-- +..+. +++|.=++-. |..+++..++.+++.|..+. +-. .
T Consensus 241 G~kIa~vGD~~~~rv~~Sl~~~--la~~~-------G~~v~l~~P~----~~~~~~~~~~~~~~~G~~v~~~~d~----~ 303 (429)
T PRK11891 241 GAHIALVGDLKYGRTVHSLVKL--LALYR-------GLKFTLVSPP----TLEMPAYIVEQISRNGHVIEQTDDL----A 303 (429)
T ss_pred CCEEEEECcCCCChHHHHHHHH--HHHhc-------CCEEEEECCC----ccccCHHHHHHHHhcCCeEEEEcCH----H
Confidence 4799999994 778776542 11111 2445545533 33466777777777776541 111 1
Q ss_pred cccCCccEEEEec
Q psy10839 91 DDFYKFDYIIATD 103 (232)
Q Consensus 91 ~dl~~aDlII~Md 103 (232)
+-++.+|+|++..
T Consensus 304 eav~~ADVVYt~~ 316 (429)
T PRK11891 304 AGLRGADVVYATR 316 (429)
T ss_pred HHhCCCCEEEEcC
Confidence 4478999999844
No 151
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.07 E-value=1.8e+02 Score=23.29 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=43.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYK 95 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~ 95 (232)
|++|-||..||.. .++.+++++ + ++.|.- ++ .++...+.+.+.|+.....+ .+..++
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~-~----g~~v~~-----~d----~~~~~~~~~~~~g~~~~~s~----~e~~~~ 57 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAK-A----GYEVTV-----YD----RSPEKAEALAEAGAEVADSP----AEAAEQ 57 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHH-T----TTEEEE-----EE----SSHHHHHHHHHTTEEEESSH----HHHHHH
T ss_pred CCEEEEEchHHHH-----HHHHHHHHh-c----CCeEEe-----ec----cchhhhhhhHHhhhhhhhhh----hhHhhc
Confidence 5799999999644 444445442 2 233321 11 55677777877774321111 233567
Q ss_pred ccEEEEecCC--cHHHHHH---hCCCCCCccEEE
Q psy10839 96 FDYIIATDET--DLSFLRL---EAPPDSSAQLVK 124 (232)
Q Consensus 96 aDlII~Md~~--~~~~L~~---~~P~~~~~Kv~l 124 (232)
+|+||++-.. +.+.+.. ..+....++++.
T Consensus 58 ~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 58 ADVVILCVPDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp BSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ccceEeecccchhhhhhhhhhHHhhccccceEEE
Confidence 7999988654 3333333 244323455554
No 152
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=30.83 E-value=1.7e+02 Score=25.92 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=40.0
Q ss_pred eEEEEc--CCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 18 SVLFLC--RDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 18 ~ILFVC--tgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
+|||+. .|...|..+++.+= ++-++.+ .++.|..+-... -|.++.+...+.|.+.|+|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~-~lk~~~~--~D~vi~NgEn~~--gg~gl~~~~~~~L~~~G~D~ 61 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLP-KLKKEYK--IDFVIANGENAA--GGKGITPKIAKELLSAGVDV 61 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHH-HHHHHCC--CCEEEECCcccc--CCCCCCHHHHHHHHhcCCCE
Confidence 578886 37777877766543 3333433 347776655544 25568899999999999996
No 153
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=30.67 E-value=53 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=26.6
Q ss_pred CeEEEEcCCC-----chHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 17 KSVLFLCRDN-----YMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 17 ~~ILFVCtgN-----icRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
..|=+||.|| +..+|+.+.+.+.+ .++|+ ++-|-|.|-.
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l-~~~g~--~~~ilsRGYg 90 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQL-QARGL--KPGVVSRGYG 90 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHH-HHCCC--eEEEECCCCC
Confidence 3444555555 56999999999876 45555 4777777753
No 154
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=30.49 E-value=36 Score=27.23 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHH--HHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 19 VLFLCRDNYMRSPMIKS--LFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 19 ILFVCtgNicRSpmAEa--ilr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
||++|.||..|.==+-+ +.+.+ +++.+++++++..+|+.+
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L-~~~~~~~~v~~id~gt~~ 42 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRL-QAYLLPPHVRLVDCGTAG 42 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHH-hhcCCCCCeEEEECCCCH
Confidence 58999999999732222 22222 234456779999999865
No 155
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=30.38 E-value=2.4e+02 Score=25.06 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=46.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
..+.|+|+|-.--|--|=+.+.+.+.++|.. .|.-|.+..+ |-=..+++-|+.+|+.-
T Consensus 138 e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~---~v~v~~ve~y----P~~d~vi~~l~~~~~~~ 195 (265)
T COG4822 138 EILVLMGHGTDHHSNAAYACLDHVLDEYGFD---NVFVAAVEGY----PLVDTVIEYLRKNGIKE 195 (265)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhcCCC---ceEEEEecCC----CcHHHHHHHHHHcCCce
Confidence 4589999999999998889999999988874 3555666544 56678889999999864
No 156
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=30.35 E-value=44 Score=22.80 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHcCCCC
Q psy10839 66 MDPRAKERCEMYGLDT 81 (232)
Q Consensus 66 ~dp~Ai~vL~e~GIdl 81 (232)
-+|.+.++++++|||.
T Consensus 11 ~~p~~a~vf~~~gIDf 26 (56)
T PF04405_consen 11 EDPRAARVFRKYGIDF 26 (56)
T ss_pred HChHHHHHHHHcCCcc
Confidence 3688899999999997
No 157
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=30.03 E-value=79 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCC----CceeccCcc----ccCCccEEEEecCCc
Q psy10839 69 RAKERCEMYGLDTE----HVVREITKD----DFYKFDYIIATDETD 106 (232)
Q Consensus 69 ~Ai~vL~e~GIdl~----hrsr~lt~~----dl~~aDlII~Md~~~ 106 (232)
.|.+.|++.||+.. +.-++++.+ .++.++.||++++..
T Consensus 218 eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~ 263 (327)
T PRK09212 218 EAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGW 263 (327)
T ss_pred HHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCC
Confidence 45666777898862 455666654 346789999999877
No 158
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=30.01 E-value=66 Score=24.79 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|++.|.++--||..|-.+|+.+ |. .+.+-.+|+.+|
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~----G~--~v~~L~GG~~aw 124 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL----GI--DVPLLEGGYKAY 124 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc----CC--ceeEeCCcHHHH
Confidence 45689999976567888887666443 55 377778887665
No 159
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=29.40 E-value=49 Score=26.48 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+++|.+ -.+|..|...|+.. |. .++.+-.+|+..|
T Consensus 49 ~~~vVv~c~~-g~~a~~aa~~L~~~----G~-~~v~~L~GG~~aW 87 (145)
T cd01535 49 AERYVLTCGS-SLLARFAAADLAAL----TV-KPVFVLEGGTAAW 87 (145)
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHHc----CC-cCeEEecCcHHHH
Confidence 4679999987 46777766665543 43 4788999999877
No 160
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=29.26 E-value=1.8e+02 Score=22.44 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred eEEEEcCCCchHH--HH-HHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 18 SVLFLCRDNYMRS--PM-IKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 18 ~ILFVCtgNicRS--pm-AEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
.=|.+.+|..++. +- -..+++++.+ .|.. ++-| ++..+ ...+++.+++.+.++|+++
T Consensus 43 gElvlttg~~~~~~~~~~~~~~i~~L~~-~~~a-gL~i---~~~~~--~~~iP~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 43 GELVLTTGYALRDDDEEELREFIRELAE-KGAA-GLGI---KTGRY--LDEIPEEIIELADELGLPL 102 (123)
T ss_pred CeEEEECCcccCCCCHHHHHHHHHHHHH-CCCe-EEEE---eccCc--cccCCHHHHHHHHHcCCCE
Confidence 4577889999988 43 5677777763 2321 2222 12222 2368999999999999997
No 161
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=29.11 E-value=1.3e+02 Score=25.17 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=26.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEee
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAG 56 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG 56 (232)
++|+||...+..-+++..+.-+-.. ++..+=.+.+++++
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~-~~~p~l~l~~~~~~ 39 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNR-DHCPGLELSVFAAA 39 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhh-ccCCCeEEEEEeHH
Confidence 5899999999999888877664433 23333346677776
No 162
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=29.07 E-value=1.1e+02 Score=27.94 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCC---C-CceeccCccc----cCCccEEEEecCCc
Q psy10839 68 PRAKERCEMYGLDT---E-HVVREITKDD----FYKFDYIIATDETD 106 (232)
Q Consensus 68 p~Ai~vL~e~GIdl---~-hrsr~lt~~d----l~~aDlII~Md~~~ 106 (232)
-.|.+.|++.||+. + +.-++|+.+. +.....||++++..
T Consensus 217 l~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~ 263 (327)
T CHL00144 217 LQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECM 263 (327)
T ss_pred HHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCC
Confidence 34556667789886 4 6778888754 35678999999754
No 163
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=29.06 E-value=61 Score=29.56 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=44.5
Q ss_pred CeEEEEcCCCchHH---HHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCcccc
Q psy10839 17 KSVLFLCRDNYMRS---PMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDF 93 (232)
Q Consensus 17 ~~ILFVCtgNicRS---pmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl 93 (232)
..||-.|..+.-=+ -.+++++++..+ .| ..+.|.-.-+.|...|. ......|.+.||+....+-.--...+
T Consensus 120 ~~ILT~~~Sg~lat~~~~tv~~~l~~A~~-~g--~~~~V~v~EsrP~~~G~---~~~a~~L~~~gI~vtlI~Dsa~~~~m 193 (303)
T TIGR00524 120 DTVLTHCNAGALATSDYGTALGVIRSAWE-DG--KRIRVIACETRPRNQGS---RLTAWELMQDGIDVTLITDSMAAYFM 193 (303)
T ss_pred CEEEEecCCccccccCcchHHHHHHHHHH-cC--CceEEEECCCCCccchH---HHHHHHHHHCCCCEEEEChhHHHHHc
Confidence 36777664311100 456777766543 33 35888877777754331 34677888999986211111111223
Q ss_pred C--CccEEEEecC
Q psy10839 94 Y--KFDYIIATDE 104 (232)
Q Consensus 94 ~--~aDlII~Md~ 104 (232)
. +.|.||+=.+
T Consensus 194 ~~~~vd~VlvGAd 206 (303)
T TIGR00524 194 QKGEIDAVIVGAD 206 (303)
T ss_pred cccCCCEEEEccc
Confidence 4 6777776443
No 164
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=28.99 E-value=2.3e+02 Score=26.40 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=60.3
Q ss_pred CcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCc--------------cccCCccEEEEecCCcHHHHHH
Q psy10839 48 NEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITK--------------DDFYKFDYIIATDETDLSFLRL 112 (232)
Q Consensus 48 ~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~--------------~dl~~aDlII~Md~~~~~~L~~ 112 (232)
.+..+..||+... .|....|-..+++++.|+.. +-...++.. .+-+.+|-+|+.+.+.+ .+
T Consensus 96 ~dmvfitaG~GGG-TGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkl---l~ 171 (338)
T COG0206 96 ADMVFVTAGMGGG-TGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKL---LK 171 (338)
T ss_pred CCeEEEEeeecCC-ccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHH---Hh
Confidence 3466778998875 68899999999999988754 433333322 23456788888876532 22
Q ss_pred hCCCCCCccEEEecccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10839 113 EAPPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIE 176 (232)
Q Consensus 113 ~~P~~~~~Kv~ll~~f~~~~~~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~~ 176 (232)
..| -..-.++ |..+ -+.+...+..+.+.+...
T Consensus 172 ~~~----------------------------~~~~~~A-f~~a---d~vl~~~v~~i~e~I~~~ 203 (338)
T COG0206 172 GKD----------------------------KTPIAEA-FNEA---DDVLGNAVKGITELITKP 203 (338)
T ss_pred ccC----------------------------cccHHHH-HHHH---HHHHHHHHHHHHHHhccC
Confidence 222 1111345 7777 778888888888777653
No 165
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=28.84 E-value=1.1e+02 Score=28.43 Aligned_cols=81 Identities=10% Similarity=0.001 Sum_probs=46.9
Q ss_pred eEEEEcCCCc---hHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 18 SVLFLCRDNY---MRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 18 ~ILFVCtgNi---cRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
.||--|.... ..+-.|.+++++..+ .| ..+.|.-.-+.|...|. ..+...|.+.||+....+-.--...+.
T Consensus 149 ~ILThcnsg~lat~~~gtal~~l~~A~~-~g--~~~~V~v~EsrP~~qG~---rlta~~L~~~GI~vtlI~Dsav~~~m~ 222 (331)
T TIGR00512 149 RVLTHCNTGSLATAGYGTALGVIRSAHE-KG--RLEHVYADETRPRLQGA---RLTAWELVQEGIPATLITDSMAAHLMK 222 (331)
T ss_pred eEEeecCCccccccccchHHHHHHHHHH-cC--CceEEEECCCCchhhHH---HHHHHHHHHCCCCEEEEcccHHHHHhc
Confidence 7888886542 223367788876653 33 35888888888764442 234577899999862111111112233
Q ss_pred --CccEEEEecC
Q psy10839 95 --KFDYIIATDE 104 (232)
Q Consensus 95 --~aDlII~Md~ 104 (232)
+.|.||+=.+
T Consensus 223 ~~~vd~VivGAd 234 (331)
T TIGR00512 223 HGEVDAVIVGAD 234 (331)
T ss_pred ccCCCEEEEccc
Confidence 6777776443
No 166
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=27.50 E-value=73 Score=29.54 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCchHHHHH----HHH------HHHHHHhcCCCCcEEEEEeeeccCCCCC---------CCCHHHHHHHH
Q psy10839 15 GKKSVLFLCRDNYMRSPMI----KSL------FKEMLAMANQTNEWIVESAGIGWWDVGK---------GMDPRAKERCE 75 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmA----Eai------lr~l~~~~gl~~~i~V~SAG~~~~~~G~---------~~dp~Ai~vL~ 75 (232)
..++|.+|-++=.-|...+ |.+ +.+.++..|+. .-+|-=+|+-|. .|+ .+=..|++.++
T Consensus 158 ~~LrV~lvT~HipLk~V~~~it~e~i~~~i~~~~~~l~~~gi~-~PrIaV~gLNPH-AGE~G~~G~EE~~iI~PAi~~~~ 235 (326)
T PRK03371 158 DKLKVIHVSTHIALRKFLDTLNTARVETVIGIADTFLKRVGYV-KPRIAVAGVNPH-AGENGLFGDEEIRIVTPAIEAMR 235 (326)
T ss_pred CCeEEEEeeccccHHHHHHHhCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeeCCC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 3478888877655555432 222 22223334553 335677899874 332 12245778889
Q ss_pred HcCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 76 MYGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 76 e~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
+.|+++ + ..+-.+ ......+||.||+|-..|
T Consensus 236 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 269 (326)
T PRK03371 236 AKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQ 269 (326)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEEccccc
Confidence 999998 4 555544 455667899999998764
No 167
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.42 E-value=1.4e+02 Score=22.15 Aligned_cols=67 Identities=22% Similarity=0.176 Sum_probs=38.5
Q ss_pred cccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCceeccCc
Q psy10839 12 LFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVVREITK 90 (232)
Q Consensus 12 ~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrsr~lt~ 90 (232)
+-...++||+|..|+.. ..-++.+++ . +..+.|.|--. + .++ +. .+..+.+.
T Consensus 3 l~l~~~~vlVvGgG~va-----~~k~~~Ll~-~--gA~v~vis~~~----------~----~~~----~~i~~~~~~~~- 55 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVA-----ARKARLLLE-A--GAKVTVISPEI----------E----FSE----GLIQLIRREFE- 55 (103)
T ss_dssp E--TT-EEEEEEESHHH-----HHHHHHHCC-C--TBEEEEEESSE----------H----HHH----TSCEEEESS-G-
T ss_pred EEcCCCEEEEECCCHHH-----HHHHHHHHh-C--CCEEEEECCch----------h----hhh----hHHHHHhhhHH-
Confidence 34467899999988654 445555553 2 35677776443 1 111 22 34555665
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.++..+|+|++.++.
T Consensus 56 ~~l~~~~lV~~at~d 70 (103)
T PF13241_consen 56 EDLDGADLVFAATDD 70 (103)
T ss_dssp GGCTTESEEEE-SS-
T ss_pred HHHhhheEEEecCCC
Confidence 789999999998865
No 168
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=27.09 E-value=2.6e+02 Score=26.01 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCchHHHH----HHHHH------HHHHH-hcCCCCcEEEEEeeeccCCCCC---------CCCHHHHHHHH
Q psy10839 16 KKSVLFLCRDNYMRSPM----IKSLF------KEMLA-MANQTNEWIVESAGIGWWDVGK---------GMDPRAKERCE 75 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpm----AEail------r~l~~-~~gl~~~i~V~SAG~~~~~~G~---------~~dp~Ai~vL~ 75 (232)
.++|.+|-++=.-|... -|.+. .+.++ +.|+. .=+|-=+|+-|. .|+ .+=..|++.++
T Consensus 164 ~LrV~lvT~HipL~~V~~~it~e~i~~~i~l~~~~l~~~~gi~-~PrIaV~GLNPH-AGE~G~~G~EE~~iI~PAI~~~~ 241 (336)
T PRK05312 164 QLRVVPVTIHIPLRDVPAALTPELIVATARITAADLRRRFGIA-SPRLAVAGLNPH-AGEGGALGREDIDIIAPAIEQLR 241 (336)
T ss_pred CcEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCC-CCCEEEEeeCCC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788886654433322 22222 22232 34553 235677899874 332 12246778888
Q ss_pred HcCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 76 MYGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 76 e~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
+.|+++ + ..+-.+ ......+||.||+|-..|
T Consensus 242 ~~Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 275 (336)
T PRK05312 242 AEGIDARGPLPADTMFHAAARATYDAAICMYHDQ 275 (336)
T ss_pred HCCCCccCCCCchhhcccccccCCCEEEEccccc
Confidence 999998 4 544443 445567899999998764
No 169
>KOG2882|consensus
Probab=27.01 E-value=1.4e+02 Score=27.44 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=39.0
Q ss_pred hhhhccccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCC---CcEEEEEeeeccCC------CCC----CCCHHHH
Q psy10839 5 EEVWGGFLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQT---NEWIVESAGIGWWD------VGK----GMDPRAK 71 (232)
Q Consensus 5 ~~~~~~~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~---~~i~V~SAG~~~~~------~G~----~~dp~Ai 71 (232)
.+..+.+... .+.|+|| |.|+++|. +.++++.. +.|+. ..=.+.||...+.. .+. .-.....
T Consensus 44 ~e~l~~L~~~-gK~i~fv-TNNStksr--~~y~kK~~-~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~ 118 (306)
T KOG2882|consen 44 PEALNLLKSL-GKQIIFV-TNNSTKSR--EQYMKKFA-KLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIR 118 (306)
T ss_pred HHHHHHHHHc-CCcEEEE-eCCCcchH--HHHHHHHH-HhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhh
Confidence 3334444433 3556555 99999997 44444433 33332 12123344432210 000 0124566
Q ss_pred HHHHHcCCCC-CCceecc
Q psy10839 72 ERCEMYGLDT-EHVVREI 88 (232)
Q Consensus 72 ~vL~e~GIdl-~hrsr~l 88 (232)
+.|++.|+.. ++.+...
T Consensus 119 ~eL~~aG~~~~g~~~~~~ 136 (306)
T KOG2882|consen 119 EELDEAGFEYFGGGPDGK 136 (306)
T ss_pred HHHHHcCceeecCCCCcc
Confidence 7889999876 5544443
No 170
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=26.96 E-value=1.4e+02 Score=28.26 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=18.2
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q psy10839 18 SVLFLCRDNYMRSPMIKSLFK 38 (232)
Q Consensus 18 ~ILFVCtgNicRSpmAEailr 38 (232)
+|-||+-|.+.=|++|..+.+
T Consensus 1 ~~hfigigG~gm~~la~~l~~ 21 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQ 21 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHh
Confidence 478999999999999987764
No 171
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.46 E-value=2.9e+02 Score=25.00 Aligned_cols=76 Identities=8% Similarity=0.029 Sum_probs=42.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC---CCceeccCc--
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT---EHVVREITK-- 90 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl---~hrsr~lt~-- 90 (232)
++||.+..+|| .--.++++.+.- .+.+.++=+++... +|.+.+.++++||+. +|.+.....
T Consensus 93 ~~kiavl~Sg~---g~nl~al~~~~~-----~~~l~~~i~~visn------~~~~~~~A~~~gIp~~~~~~~~~~~~~~~ 158 (289)
T PRK13010 93 RPKVVIMVSKF---DHCLNDLLYRWR-----MGELDMDIVGIISN------HPDLQPLAVQHDIPFHHLPVTPDTKAQQE 158 (289)
T ss_pred CeEEEEEEeCC---CccHHHHHHHHH-----CCCCCcEEEEEEEC------ChhHHHHHHHcCCCEEEeCCCcccccchH
Confidence 45766666665 234556665543 12344555555542 245678889999996 344321111
Q ss_pred -c---cc--CCccEEEEecCC
Q psy10839 91 -D---DF--YKFDYIIATDET 105 (232)
Q Consensus 91 -~---dl--~~aDlII~Md~~ 105 (232)
+ .+ .+.|+|+...-.
T Consensus 159 ~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYM 179 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhh
Confidence 1 11 257999998743
No 172
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=26.42 E-value=78 Score=28.97 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeec
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIG 58 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~ 58 (232)
+..+|++.|..+-.||.+|..+|+.+ |. .+.+-.+|..
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~----G~--~v~~L~GG~~ 110 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQI----GF--RVPRLEGGYK 110 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHc----CC--CEEEecChHH
Confidence 34469999976668999999888765 44 3666777774
No 173
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.42 E-value=1.5e+02 Score=26.80 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC---CCceeccC--
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT---EHVVREIT-- 89 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl---~hrsr~lt-- 89 (232)
+++||.|..+|| ..-.++++++.-. +.+.++=+++... +|.+...++++||+. .+.+....
T Consensus 88 ~~~ri~vl~Sg~---g~nl~al~~~~~~-----~~~~~~i~~visn------~~~~~~lA~~~gIp~~~~~~~~~~~~~~ 153 (286)
T PRK13011 88 ARPKVLIMVSKF---DHCLNDLLYRWRI-----GELPMDIVGVVSN------HPDLEPLAAWHGIPFHHFPITPDTKPQQ 153 (286)
T ss_pred cCceEEEEEcCC---cccHHHHHHHHHc-----CCCCcEEEEEEEC------CccHHHHHHHhCCCEEEeCCCcCchhhh
Confidence 467999999995 5677888877642 2233444444332 134555688999996 34321111
Q ss_pred -cc---cc--CCccEEEEecC
Q psy10839 90 -KD---DF--YKFDYIIATDE 104 (232)
Q Consensus 90 -~~---dl--~~aDlII~Md~ 104 (232)
.+ .+ ...|+||+..-
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 154 EAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHHHHHHHHhCcCEEEEeCh
Confidence 11 11 25899999864
No 174
>PRK08618 ornithine cyclodeaminase; Validated
Probab=25.78 E-value=91 Score=28.31 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccC--ccc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREIT--KDD 92 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt--~~d 92 (232)
...+|++|.+|.+.|+.+ ++++.. .++ ..+.|.+.--. .....+.+.-.+.|++. ..++ ++.
T Consensus 126 ~~~~v~iiGaG~~a~~~~-~al~~~----~~~-~~v~v~~r~~~------~a~~~~~~~~~~~~~~~----~~~~~~~~~ 189 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQL-EAVLAV----RDI-ERVRVYSRTFE------KAYAFAQEIQSKFNTEI----YVVNSADEA 189 (325)
T ss_pred CCcEEEEECCcHHHHHHH-HHHHhc----CCc-cEEEEECCCHH------HHHHHHHHHHHhcCCcE----EEeCCHHHH
Confidence 357899999999999865 344331 233 35666643211 11111111112345543 1122 234
Q ss_pred cCCccEEEEecCCcHHHHHHhCCCCCCccEEEeccccc
Q psy10839 93 FYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTR 130 (232)
Q Consensus 93 l~~aDlII~Md~~~~~~L~~~~P~~~~~Kv~ll~~f~~ 130 (232)
+.++|+|++-+....-.+. .+-. ....|..+|.+.+
T Consensus 190 ~~~aDiVi~aT~s~~p~i~-~~l~-~G~hV~~iGs~~p 225 (325)
T PRK08618 190 IEEADIIVTVTNAKTPVFS-EKLK-KGVHINAVGSFMP 225 (325)
T ss_pred HhcCCEEEEccCCCCcchH-HhcC-CCcEEEecCCCCc
Confidence 6789999999876543333 2222 2334545555544
No 175
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=25.64 E-value=4.8e+02 Score=24.81 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcC-CCCCCceeccC--cc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG-LDTEHVVREIT--KD 91 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~G-Idl~hrsr~lt--~~ 91 (232)
..++||+|.+|.+.| ++++++. +.|. ..+.|.+.- ..++.....++| .. ...++ .+
T Consensus 180 ~~kkvlviGaG~~a~-----~va~~L~-~~g~-~~I~V~nRt----------~~ra~~La~~~~~~~----~~~~~~l~~ 238 (414)
T PRK13940 180 SSKNVLIIGAGQTGE-----LLFRHVT-ALAP-KQIMLANRT----------IEKAQKITSAFRNAS----AHYLSELPQ 238 (414)
T ss_pred cCCEEEEEcCcHHHH-----HHHHHHH-HcCC-CEEEEECCC----------HHHHHHHHHHhcCCe----EecHHHHHH
Confidence 357899999998664 4444443 3343 356665532 245566666665 32 22222 24
Q ss_pred ccCCccEEEEecCCcH
Q psy10839 92 DFYKFDYIIATDETDL 107 (232)
Q Consensus 92 dl~~aDlII~Md~~~~ 107 (232)
.+.++|+||..+....
T Consensus 239 ~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 239 LIKKADIIIAAVNVLE 254 (414)
T ss_pred HhccCCEEEECcCCCC
Confidence 4788999999997643
No 176
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.28 E-value=63 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
....|+|+|.... ||..|...|+ +.|.. ++.+.=.|+..|
T Consensus 57 ~~~~ivv~c~~g~-~s~~a~~~L~----~~G~~-~v~~l~GG~~~w 96 (108)
T PRK00162 57 FDTPVMVMCYHGN-SSQGAAQYLL----QQGFD-VVYSIDGGFEAW 96 (108)
T ss_pred CCCCEEEEeCCCC-CHHHHHHHHH----HCCch-heEEecCCHHHH
Confidence 3467999997543 6776665554 44553 555666666554
No 177
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=25.22 E-value=1.7e+02 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=20.3
Q ss_pred eEEEEcCCCc---hHHHHHHHHHHHH---HHhcCCCCcEEEEEeee
Q psy10839 18 SVLFLCRDNY---MRSPMIKSLFKEM---LAMANQTNEWIVESAGI 57 (232)
Q Consensus 18 ~ILFVCtgNi---cRSpmAEailr~l---~~~~gl~~~i~V~SAG~ 57 (232)
..+|||+++. |....+..+++.+ +.++|. +++.|..+|-
T Consensus 2 ~~ilVCth~rrd~~C~~~g~~l~~~l~~~l~~~~~-~~v~v~~~~c 46 (97)
T cd03062 2 PLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSH 46 (97)
T ss_pred CEEEEeCCCCCCcChhhcCHHHHHHHHHHHHHhCC-CceEEEeCCc
Confidence 4689999633 3333443343333 334443 4566666553
No 178
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=25.00 E-value=47 Score=25.33 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=25.1
Q ss_pred HhhhCCCCccceeeeeccCcc-ccccccchhhh
Q psy10839 173 LGIEVPETTTLKIVTVRTSPK-IKSSTWNAWRL 204 (232)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 204 (232)
+..-.+-++-..+++++-+|- .++.+|..|.+
T Consensus 33 ~~GPipLPtk~~~~tv~rsPh~~~~ks~e~fE~ 65 (99)
T TIGR01046 33 MSGPVPLPTKRLRVPTRKSPDGEGSKTWDRWEM 65 (99)
T ss_pred EECCccCCcceEEEEeeeCCCCCCCcchHheEE
Confidence 444567788899999999999 56788888853
No 179
>PRK07589 ornithine cyclodeaminase; Validated
Probab=24.74 E-value=1.3e+02 Score=28.02 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFY 94 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~ 94 (232)
...+++++.+|...|..+- +++.- +.+ ..+.|.+..... . ....+-+++.|+++.. ... -++-+.
T Consensus 128 da~~l~iiGaG~QA~~~l~-a~~~v----r~i-~~V~v~~r~~~~------a-~~~~~~~~~~~~~v~~-~~~-~~~av~ 192 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQAL-AFKAL----LGI-EEIRLYDIDPAA------T-AKLARNLAGPGLRIVA-CRS-VAEAVE 192 (346)
T ss_pred CCcEEEEECCcHHHHHHHH-HHHHh----CCc-eEEEEEeCCHHH------H-HHHHHHHHhcCCcEEE-eCC-HHHHHh
Confidence 3578999999999988863 33221 123 467777544221 1 1222334445665411 001 134578
Q ss_pred CccEEEEecCCcH-HH-HHHhCCCCCCccEEEeccccc
Q psy10839 95 KFDYIIATDETDL-SF-LRLEAPPDSSAQLVKLGTFTR 130 (232)
Q Consensus 95 ~aDlII~Md~~~~-~~-L~~~~P~~~~~Kv~ll~~f~~ 130 (232)
++|+|++.+.+.- .. +...+-. ....|-.+|.|.+
T Consensus 193 ~ADIIvtaT~S~~~~Pvl~~~~lk-pG~hV~aIGs~~p 229 (346)
T PRK07589 193 GADIITTVTADKTNATILTDDMVE-PGMHINAVGGDCP 229 (346)
T ss_pred cCCEEEEecCCCCCCceecHHHcC-CCcEEEecCCCCC
Confidence 9999999996432 11 2111111 2334666666655
No 180
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=24.62 E-value=88 Score=29.09 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCchHHHHH----HHH------HHHHHHhcCCCCcEEEEEeeeccCCCCC---------CCCHHHHHHHH
Q psy10839 15 GKKSVLFLCRDNYMRSPMI----KSL------FKEMLAMANQTNEWIVESAGIGWWDVGK---------GMDPRAKERCE 75 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmA----Eai------lr~l~~~~gl~~~i~V~SAG~~~~~~G~---------~~dp~Ai~vL~ 75 (232)
...+|.+|-++=.-|...+ |.+ +.+.+.+.|+. .-+|-=+|+-|. .|+ .+=..|++.++
T Consensus 159 ~~LrV~lvT~HipL~~V~~~it~e~i~~~i~~~~~~l~~~gi~-~PrIaV~gLNPH-AGE~G~~G~EE~~iI~PAI~~~~ 236 (332)
T PRK00232 159 EGLRVALVTTHLPLRDVADAITPERLEEVIRILHADLRRKGIA-EPRIAVCGLNPH-AGEGGHFGREEIDIIIPALEELR 236 (332)
T ss_pred CCeEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeeCCC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 3467887766544333322 222 22223322653 335777899874 332 12246788899
Q ss_pred HcCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 76 MYGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 76 e~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
+.|+++ + +.+-.+ ......+||.||+|-..|
T Consensus 237 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 270 (332)
T PRK00232 237 AEGINLVGPLPADTLFQPAYLGDADAVLAMYHDQ 270 (332)
T ss_pred hCCCCcCCCCCchhhccccccCCCCEEEECcccc
Confidence 999998 4 555444 445567899999998765
No 181
>PLN02285 methionyl-tRNA formyltransferase
Probab=24.47 E-value=2.8e+02 Score=25.46 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhc--CCCCcEEEEEeeeccCC-----CCCC-CCHHHHHHHHHcCCCCC--Cc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMA--NQTNEWIVESAGIGWWD-----VGKG-MDPRAKERCEMYGLDTE--HV 84 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~--gl~~~i~V~SAG~~~~~-----~G~~-~dp~Ai~vL~e~GIdl~--hr 84 (232)
.++||+|..++. +|-..|+.+.+.. | ..+++|. |+...+ .|.. ..+.+.+.+.++||+.. ..
T Consensus 5 ~~~kI~f~Gt~~-----fa~~~L~~L~~~~~~~-~~~~~iv--~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~ 76 (334)
T PLN02285 5 RKKRLVFLGTPE-----VAATVLDALLDASQAP-DSAFEVA--AVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFT 76 (334)
T ss_pred CccEEEEEECCH-----HHHHHHHHHHhhhhcc-CCCCeEE--EEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecC
Confidence 578999998764 4445555554321 1 1123332 332210 0111 22346778889999931 12
Q ss_pred eeccCc----cc--cCCccEEEEecCC
Q psy10839 85 VREITK----DD--FYKFDYIIATDET 105 (232)
Q Consensus 85 sr~lt~----~d--l~~aDlII~Md~~ 105 (232)
+..+.. +. -..+|+||++.-.
T Consensus 77 ~~~~~~~~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 77 PEKAGEEDFLSALRELQPDLCITAAYG 103 (334)
T ss_pred ccccCCHHHHHHHHhhCCCEEEhhHhh
Confidence 222221 11 2378999999743
No 182
>PRK00023 cmk cytidylate kinase; Provisional
Probab=24.43 E-value=1.3e+02 Score=25.87 Aligned_cols=53 Identities=11% Similarity=-0.034 Sum_probs=36.9
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
||.++.|.+++.-.++-|.+|+.+.+++. +...+.|.. .......+.+.|+++
T Consensus 1 ~~~~~~i~i~g~~gsGksti~~~la~~~~--------~~~~~~~~~--------~r~~~~~~~~~g~~~ 53 (225)
T PRK00023 1 MMKAIVIAIDGPAGSGKGTVAKILAKKLG--------FHYLDTGAM--------YRAVALAALRHGVDL 53 (225)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhC--------CCcccCchh--------HHHHHHHHHHcCCCC
Confidence 46677899999999999999999988872 456666652 222333445566665
No 183
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=24.40 E-value=3.3e+02 Score=23.59 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CC-ce---eccC-c
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EH-VV---REIT-K 90 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~h-rs---r~lt-~ 90 (232)
|+|++|..|+++ +.+|..+.+. | ..+.+... ++...+.+.+.|+.+ .. .. ...+ .
T Consensus 1 m~I~IiG~G~~G-~~~a~~L~~~-----g--~~V~~~~r-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 61 (304)
T PRK06522 1 MKIAILGAGAIG-GLFGAALAQA-----G--HDVTLVAR-----------RGAHLDALNENGLRLEDGEITVPVLAADDP 61 (304)
T ss_pred CEEEEECCCHHH-HHHHHHHHhC-----C--CeEEEEEC-----------ChHHHHHHHHcCCcccCCceeecccCCCCh
Confidence 479999999998 6667665432 2 23433331 122344555667644 11 11 1122 2
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
..+..+|+||.....
T Consensus 62 ~~~~~~d~vila~k~ 76 (304)
T PRK06522 62 AELGPQDLVILAVKA 76 (304)
T ss_pred hHcCCCCEEEEeccc
Confidence 234789999888764
No 184
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=24.34 E-value=1.2e+02 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH-------hhhCCCCccceeeeeccCccc-cccccchhhh
Q psy10839 162 GYWYLRGFLDTL-------GIEVPETTTLKIVTVRTSPKI-KSSTWNAWRL 204 (232)
Q Consensus 162 I~~~v~~ll~~L-------~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 204 (232)
++..|..|++.. ..-.+-++-..+++++-+|-+ .+.+|..|.+
T Consensus 31 Ld~~~~~Ii~~ak~~g~~v~GPipLPtK~~~~tvlrSPhg~~kksreqfE~ 81 (115)
T PTZ00039 31 IEKVCADIITGAKEKNLKVTGPVRMPVKTLRITTRKSPCGEGTNTWDRFEM 81 (115)
T ss_pred HHHHHHHHHHHHHHcCCEeECCccCCceeEEEEeeeCCCCCCCchHHHhee
Confidence 444444444443 445677899999999999995 4777877643
No 185
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=24.12 E-value=1.1e+02 Score=28.30 Aligned_cols=72 Identities=11% Similarity=-0.035 Sum_probs=40.3
Q ss_pred CCCeEEEEcCC--CchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHH----HHHHcCCCCCCceecc
Q psy10839 15 GKKSVLFLCRD--NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKE----RCEMYGLDTEHVVREI 88 (232)
Q Consensus 15 ~~~~ILFVCtg--NicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~----vL~e~GIdl~hrsr~l 88 (232)
...+|.||+-+ |++||-+.- +..+ +++|.=+|-. |-.+++..+. .+++.|..+... ..+
T Consensus 154 ~g~kia~vGD~~~~v~~Sl~~~--~~~~--------g~~v~~~~P~----~~~~~~~~~~~~~~~~~~~g~~~~~~-~d~ 218 (332)
T PRK04284 154 KDIKFTYVGDGRNNVANALMQG--AAIM--------GMDFHLVCPK----ELNPDDELLNKCKEIAAETGGKITIT-DDI 218 (332)
T ss_pred CCcEEEEecCCCcchHHHHHHH--HHHc--------CCEEEEECCc----cccCCHHHHHHHHHHHHHcCCeEEEE-cCH
Confidence 45799999974 788886542 2221 2455555543 2235555553 344567654211 111
Q ss_pred CccccCCccEEEEe
Q psy10839 89 TKDDFYKFDYIIAT 102 (232)
Q Consensus 89 t~~dl~~aDlII~M 102 (232)
++-++++|+|++-
T Consensus 219 -~ea~~~aDvvy~~ 231 (332)
T PRK04284 219 -DEGVKGSDVIYTD 231 (332)
T ss_pred -HHHhCCCCEEEEC
Confidence 2447899999985
No 186
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.93 E-value=4.5e+02 Score=23.52 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=11.7
Q ss_pred ccCCccEEEEecCCc
Q psy10839 92 DFYKFDYIIATDETD 106 (232)
Q Consensus 92 dl~~aDlII~Md~~~ 106 (232)
.+..+|+||.+-...
T Consensus 71 ~~~~aD~Vi~~v~~~ 85 (328)
T PRK14618 71 ALAGADFAVVAVPSK 85 (328)
T ss_pred HHcCCCEEEEECchH
Confidence 357899999998764
No 187
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=23.88 E-value=2.2e+02 Score=25.01 Aligned_cols=66 Identities=24% Similarity=0.213 Sum_probs=39.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCc
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKF 96 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~a 96 (232)
++|.||..|+... +||..+.+ .| .+|. +.. .++...+.+.+.|+...... .+.+.++
T Consensus 3 ~~IgviG~G~mG~-~~a~~l~~-----~g----~~v~--~~d-------~~~~~~~~~~~~g~~~~~~~----~e~~~~~ 59 (296)
T PRK11559 3 MKVGFIGLGIMGK-PMSKNLLK-----AG----YSLV--VYD-------RNPEAVAEVIAAGAETASTA----KAVAEQC 59 (296)
T ss_pred ceEEEEccCHHHH-HHHHHHHH-----CC----CeEE--EEc-------CCHHHHHHHHHCCCeecCCH----HHHHhcC
Confidence 5899999998875 67776653 12 2332 111 34455555666665431111 2345789
Q ss_pred cEEEEecCC
Q psy10839 97 DYIIATDET 105 (232)
Q Consensus 97 DlII~Md~~ 105 (232)
|+||.+-..
T Consensus 60 d~vi~~vp~ 68 (296)
T PRK11559 60 DVIITMLPN 68 (296)
T ss_pred CEEEEeCCC
Confidence 999998753
No 188
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=23.79 E-value=77 Score=28.95 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+.++|++.|+|. .||..|..+|++ .|. .++...-+|+..|
T Consensus 170 kdk~IvvyC~~G-~Rs~~aa~~L~~----~Gf-~~V~~L~GGi~~w 209 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCEKASAWMKH----EGF-KEVYQLEGGIITY 209 (314)
T ss_pred CcCeEEEECCCC-cHHHHHHHHHHH----cCC-CcEEEecchHHHH
Confidence 457899999876 578888877765 455 3577778888776
No 189
>PLN02828 formyltetrahydrofolate deformylase
Probab=23.51 E-value=1.8e+02 Score=26.22 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=45.2
Q ss_pred ccCCCeEEEEcCCC-chHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCC---Cceecc
Q psy10839 13 FEGKKSVLFLCRDN-YMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTE---HVVREI 88 (232)
Q Consensus 13 ~~~~~~ILFVCtgN-icRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~---hrsr~l 88 (232)
...+++|.+.++|+ +| .++++.+.-. +.+.++=+++...+ ..+.+..+.+.++++||+.- +.....
T Consensus 67 ~~~~~riavlvSg~g~n----l~~ll~~~~~-----g~l~~eI~~ViSn~-~~~~~a~~~~~A~~~gIP~~~~~~~~~~~ 136 (268)
T PLN02828 67 LDPKYKIAVLASKQDHC----LIDLLHRWQD-----GRLPVDITCVISNH-ERGPNTHVMRFLERHGIPYHYLPTTKENK 136 (268)
T ss_pred CCCCcEEEEEEcCCChh----HHHHHHhhhc-----CCCCceEEEEEeCC-CCCCCchHHHHHHHcCCCEEEeCCCCCCC
Confidence 33567766666554 44 4555555431 22334444554432 22355678888999999863 321111
Q ss_pred C----ccccCCccEEEEecC
Q psy10839 89 T----KDDFYKFDYIIATDE 104 (232)
Q Consensus 89 t----~~dl~~aDlII~Md~ 104 (232)
. .+.+.+.|+||...-
T Consensus 137 ~e~~~~~~l~~~DliVLAgy 156 (268)
T PLN02828 137 REDEILELVKGTDFLVLARY 156 (268)
T ss_pred HHHHHHHHHhcCCEEEEeee
Confidence 1 123457999999874
No 190
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=23.45 E-value=63 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.++ -||..|...|+.+ |. +++.+.-+|+..|
T Consensus 60 ~~~~ivv~c~~g-~~s~~~~~~l~~~----G~-~~v~~l~Gg~~~w 99 (103)
T cd01447 60 EDKPFVFYCASG-WRSALAGKTLQDM----GL-KPVYNIEGGFKDW 99 (103)
T ss_pred CCCeEEEEcCCC-CcHHHHHHHHHHc----Ch-HHhEeecCcHHHH
Confidence 456899999764 4787776666543 44 2455555566544
No 191
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=23.39 E-value=1.6e+02 Score=22.62 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH-------HhhhCCCCccceeeeeccCcccc-ccccchhhh
Q psy10839 162 GYWYLRGFLDT-------LGIEVPETTTLKIVTVRTSPKIK-SSTWNAWRL 204 (232)
Q Consensus 162 I~~~v~~ll~~-------L~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 204 (232)
++..|..+++. +..-.|-++-..+++++-+|-+- +.+|..|..
T Consensus 16 Ld~~~~~I~~~~k~~g~~~~GPipLPtk~~~~tv~rSPh~~gk~sreqfE~ 66 (102)
T PRK12271 16 LDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATWDHWEM 66 (102)
T ss_pred HHHHHHHHHHHHHHcCCeEECCCcCCceeEEEEeeeCCCCCCCcchHHeEE
Confidence 44445555444 34566779999999999999976 667888853
No 192
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=23.39 E-value=92 Score=28.94 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=53.6
Q ss_pred CeEEEEcCCCchHHHHH----HHHHH------HHHH-hcCCCCcEEEEEeeeccCCCCC---------CCCHHHHHHHHH
Q psy10839 17 KSVLFLCRDNYMRSPMI----KSLFK------EMLA-MANQTNEWIVESAGIGWWDVGK---------GMDPRAKERCEM 76 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmA----Eailr------~l~~-~~gl~~~i~V~SAG~~~~~~G~---------~~dp~Ai~vL~e 76 (232)
++|.+|-++=.-|.... |.+.+ +.++ ..|+. .-+|-=+|+-|. .|+ .+=..|++.+++
T Consensus 156 LrV~lvT~HipL~~V~~~it~e~i~~~i~l~~~~l~~~~gi~-~PrIaV~GLNPH-AGE~G~~G~EE~~iI~PAi~~~~~ 233 (329)
T PRK01909 156 LRVALATTHLPLKDVSAALTIDGLVETLAIIDRDLRRDFGLA-APRILVTGLNPH-AGENGYLGREEIDVIEPALARARA 233 (329)
T ss_pred eEEEEeecCccHHHHHHHhCHHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeeCCC-CCCCCCCcHHHHHHHHHHHHHHHH
Confidence 67888866655444332 22222 2222 34553 335777899884 343 123447888999
Q ss_pred cCCCC-C-Cceecc-CccccCCccEEEEecCCc
Q psy10839 77 YGLDT-E-HVVREI-TKDDFYKFDYIIATDETD 106 (232)
Q Consensus 77 ~GIdl-~-hrsr~l-t~~dl~~aDlII~Md~~~ 106 (232)
.|+++ + ..+-.+ ......+||.||+|-..|
T Consensus 234 ~Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQ 266 (329)
T PRK01909 234 AGIDARGPYPADTLFQPRYLEDADCVLAMFHDQ 266 (329)
T ss_pred CCCCccCCCCchhhcccccccCCCEEEEccccc
Confidence 99998 4 555443 455567899999998765
No 193
>PRK10637 cysG siroheme synthase; Provisional
Probab=23.26 E-value=2.8e+02 Score=26.49 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred ccccCCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCc
Q psy10839 11 FLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90 (232)
Q Consensus 11 ~~~~~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~ 90 (232)
|+-...++||+|.-|+.. +.=++.+++ . +..+.|.| | .+++...+...+..| .+..+...+
T Consensus 7 ~~~l~~~~vlvvGgG~vA-----~rk~~~ll~-~--ga~v~vis----p-----~~~~~~~~l~~~~~i--~~~~~~~~~ 67 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVA-----ERKARLLLD-A--GARLTVNA----L-----AFIPQFTAWADAGML--TLVEGPFDE 67 (457)
T ss_pred EEEcCCCEEEEECCCHHH-----HHHHHHHHH-C--CCEEEEEc----C-----CCCHHHHHHHhCCCE--EEEeCCCCh
Confidence 455567899999999754 333444443 2 34688865 3 255655443333333 345566778
Q ss_pred cccCCccEEEEecCC
Q psy10839 91 DDFYKFDYIIATDET 105 (232)
Q Consensus 91 ~dl~~aDlII~Md~~ 105 (232)
.|++.+++||+-++.
T Consensus 68 ~dl~~~~lv~~at~d 82 (457)
T PRK10637 68 SLLDTCWLAIAATDD 82 (457)
T ss_pred HHhCCCEEEEECCCC
Confidence 899999999888754
No 194
>PRK06823 ornithine cyclodeaminase; Validated
Probab=23.11 E-value=1.7e+02 Score=26.73 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccC--ccc
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREIT--KDD 92 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt--~~d 92 (232)
...+++++.+|...|+.+- +++.- +.+ ..+.|.|..... .... .+.+++.|+++ ...+ ++.
T Consensus 127 d~~~l~iiG~G~qA~~~~~-a~~~v----~~i-~~v~v~~r~~~~------a~~~-~~~~~~~~~~v----~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLM-YLKNV----TDC-RQLWVWGRSETA------LEEY-RQYAQALGFAV----NTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHH-HHHhc----CCC-CEEEEECCCHHH------HHHH-HHHHHhcCCcE----EEECCHHHH
Confidence 4578999999999999874 33321 233 578887655322 2222 23445556554 1121 355
Q ss_pred cCCccEEEEecCCc
Q psy10839 93 FYKFDYIIATDETD 106 (232)
Q Consensus 93 l~~aDlII~Md~~~ 106 (232)
+..+|+|++.+.+.
T Consensus 190 v~~ADIV~taT~s~ 203 (315)
T PRK06823 190 AHAANLIVTTTPSR 203 (315)
T ss_pred hcCCCEEEEecCCC
Confidence 78999999998754
No 195
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=1.3e+02 Score=22.15 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy10839 138 SDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEVPE 179 (232)
Q Consensus 138 ~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~~l~~ 179 (232)
..+.-|...+.+. |++. .++|.....+|++.|..+.++
T Consensus 32 SGtT~PS~~n~~A-Fe~A---V~~iaA~areLLDaLet~q~P 69 (88)
T COG5552 32 SGTTHPSAANAEA-FEAA---VAEIAATARELLDALETRQQP 69 (88)
T ss_pred cCCCCcchhhHHH-HHHH---HHHHHHHHHHHHHhccccCCC
Confidence 3566777788888 9999 999999999999998876655
No 196
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=22.82 E-value=1.3e+02 Score=30.22 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=43.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
-.||-|.++.+-.|- .+.++++.- .++.|.|+|-... -|. ||+.+++.+++.|+++
T Consensus 600 ~dvLk~~HHGS~~Ss-s~~fl~~v~------P~~aiiS~g~~N~-ygh-P~~~vl~rl~~~g~~~ 655 (662)
T TIGR00361 600 ADVLQVGHHGSKTST-SEELIQQVQ------PKVAIISAGRNNR-WHH-PHQKVLQRLQRHSIRV 655 (662)
T ss_pred ccEEEeCCCCCCCCC-hHHHHHhcC------CCEEEEECCCCCC-CCC-ChHHHHHHHHHCCCeE
Confidence 358999888776654 456666653 6899999998653 365 7999999999999875
No 197
>KOG0235|consensus
Probab=22.65 E-value=65 Score=28.09 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred CeEEEEcCCCchHHHHHH
Q psy10839 17 KSVLFLCRDNYMRSPMIK 34 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAE 34 (232)
++||.+|+||+-|+-+..
T Consensus 157 k~Vli~aHGnsLR~i~~~ 174 (214)
T KOG0235|consen 157 KNVLIVAHGNSLRAIVKH 174 (214)
T ss_pred cEEEEEcCcHHHHHHHHH
Confidence 789999999999987653
No 198
>PRK00131 aroK shikimate kinase; Reviewed
Probab=22.02 E-value=1.4e+02 Score=23.41 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=24.5
Q ss_pred ccCCCeEEEEcCCCchHHHHHHHHHHHH
Q psy10839 13 FEGKKSVLFLCRDNYMRSPMIKSLFKEM 40 (232)
Q Consensus 13 ~~~~~~ILFVCtgNicRSpmAEailr~l 40 (232)
|.+++.|+++....+.-|.+|+.+.+.+
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4467789999999999999999998886
No 199
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.51 E-value=1.1e+02 Score=28.44 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 15 ~~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
+...|+|.|.++ .||..|..+|+. .|. .++.+..+|+..|
T Consensus 56 ~~~~IvvyC~~G-~rs~~aa~~L~~----~G~-~~v~~l~GG~~~W 95 (376)
T PRK08762 56 RDREIVLICASG-TRSAHAAATLRE----LGY-TRVASVAGGFSAW 95 (376)
T ss_pred CCCeEEEEcCCC-cHHHHHHHHHHH----cCC-CceEeecCcHHHH
Confidence 457899999875 488888766654 455 3577777777655
No 200
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.51 E-value=3e+02 Score=19.42 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-CCce
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-EHVV 85 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-~hrs 85 (232)
++|||-..-+.---..-..-|.+..+++ ..+.+.+.|-. ...|-.|.+.++++|++. .|.+
T Consensus 4 ~rVli~GgR~~~D~~~i~~~Ld~~~~~~---~~~~lvhGga~-----~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 4 MRVLITGGRDWTDHELIWAALDKVHARH---PDMVLVHGGAP-----KGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CEEEEEECCccccHHHHHHHHHHHHHhC---CCEEEEECCCC-----CCHHHHHHHHHHHCCCeeEEeCc
Confidence 5666655444433333333344444443 45778888742 248999999999999997 5554
No 201
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=21.40 E-value=4e+02 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccee
Q psy10839 152 INALDDIIHRGYWYLRGFLDTLGIEVPETTTLKI 185 (232)
Q Consensus 152 fe~~~~~~~~I~~~v~~ll~~L~~~l~~~~~~~~ 185 (232)
.++. ++.|.+.++.+++...++-+..-||++
T Consensus 217 ~~~f---~~~~~~~l~~~lp~y~~egk~~ltIai 247 (284)
T PF03668_consen 217 AQEF---LEKIEDLLDFLLPRYEKEGKSYLTIAI 247 (284)
T ss_pred HHHH---HHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 4555 778888888888877776666555554
No 202
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=21.39 E-value=1.2e+02 Score=26.33 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC-----CCceeccC
Q psy10839 33 IKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT-----EHVVREIT 89 (232)
Q Consensus 33 AEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl-----~hrsr~lt 89 (232)
.+.+|+.+. ++|.. ++|-++|+.-.....-|.+..++.+++.|+.+ +|.+..+.
T Consensus 187 ~~~il~~~~-~~g~~--lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~itlgSDAH~~~~vg 245 (253)
T TIGR01856 187 LQRILKLVA-SQGKA--LEFNTSGLRKPLEEAYPSKELLNLAKELGIPLVLGSDAHGPGDVG 245 (253)
T ss_pred HHHHHHHHH-HcCCE--EEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEEecCCCCCHHHHh
Confidence 456665554 45554 89999998632112347788999999999886 28887664
No 203
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=20.80 E-value=1.2e+02 Score=28.00 Aligned_cols=70 Identities=7% Similarity=-0.018 Sum_probs=40.0
Q ss_pred CCCeEEEEcCC--CchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHH----HHHHHcCCCC--CCcee
Q psy10839 15 GKKSVLFLCRD--NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAK----ERCEMYGLDT--EHVVR 86 (232)
Q Consensus 15 ~~~~ILFVCtg--NicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai----~vL~e~GIdl--~hrsr 86 (232)
...+|.||+-+ |++||-+--+ .. .| +.+.=++-..+ .+++..+ +.+++.|..+ .+..
T Consensus 155 ~g~~ia~vGD~~~~v~~Sl~~~~--~~----~g----~~v~~~~P~~~----~~~~~~~~~~~~~~~~~g~~i~~~~d~- 219 (336)
T PRK03515 155 NEMTLAYAGDARNNMGNSLLEAA--AL----TG----LDLRLVAPKAC----WPEAALVTECRALAQKNGGNITLTEDI- 219 (336)
T ss_pred CCCEEEEeCCCcCcHHHHHHHHH--HH----cC----CEEEEECCchh----cCcHHHHHHHHHHHHHcCCeEEEEcCH-
Confidence 35799999975 7788865421 11 12 45555554332 3445444 4455677654 1211
Q ss_pred ccCccccCCccEEEEe
Q psy10839 87 EITKDDFYKFDYIIAT 102 (232)
Q Consensus 87 ~lt~~dl~~aDlII~M 102 (232)
.+-++++|+|++-
T Consensus 220 ---~ea~~~aDvvytd 232 (336)
T PRK03515 220 ---AEGVKGADFIYTD 232 (336)
T ss_pred ---HHHhCCCCEEEec
Confidence 2346889999884
No 204
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.73 E-value=2.2e+02 Score=21.08 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 36 LFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 36 ilr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
..+++++ .+.+.|.|-|+... ..=|-...|.+.|+++||+.
T Consensus 4 ~v~~~i~----~~~Vvvf~kg~~~~-~~Cp~C~~ak~lL~~~~i~~ 44 (97)
T TIGR00365 4 RIKEQIK----ENPVVLYMKGTPQF-PQCGFSARAVQILKACGVPF 44 (97)
T ss_pred HHHHHhc----cCCEEEEEccCCCC-CCCchHHHHHHHHHHcCCCE
Confidence 3445554 36799999998533 23456668999999999874
No 205
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.43 E-value=1.5e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=33.3
Q ss_pred EEEEEeeeccCCCCCCCCHHHHHHHHHcCCCCCCceeccCccccCCccEEEEecCCc
Q psy10839 50 WIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETD 106 (232)
Q Consensus 50 i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl~hrsr~lt~~dl~~aDlII~Md~~~ 106 (232)
+.+.+.|+... ...-....++|+++||++.+.++ ...++.+++...+
T Consensus 4 i~i~~~~~~~~---~g~~~~IF~~La~~~I~vDmI~~-------s~~~isftv~~~~ 50 (75)
T cd04935 4 VSMETLGMWQQ---VGFLADVFAPFKKHGVSVDLVST-------SETNVTVSLDPDP 50 (75)
T ss_pred EEEEcCCCCCc---cCHHHHHHHHHHHcCCcEEEEEe-------CCCEEEEEEeCcc
Confidence 66778887542 23567778899999999987764 2267888887653
No 206
>KOG0820|consensus
Probab=20.34 E-value=1.7e+02 Score=26.91 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHc--CCCCCCceeccC----ccccCCccEEEEecCCcHHH--HHHhCCCC--CCccEEE-ecccccccC
Q psy10839 65 GMDPRAKERCEMY--GLDTEHVVREIT----KDDFYKFDYIIATDETDLSF--LRLEAPPD--SSAQLVK-LGTFTRKAK 133 (232)
Q Consensus 65 ~~dp~Ai~vL~e~--GIdl~hrsr~lt----~~dl~~aDlII~Md~~~~~~--L~~~~P~~--~~~Kv~l-l~~f~~~~~ 133 (232)
++||+.+..+++. |.|.+++=+-+. .-|+..||.+|+--..++.. +..+.+.. .+..+.. -.+|+..
T Consensus 87 E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~R-- 164 (315)
T KOG0820|consen 87 EIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALR-- 164 (315)
T ss_pred ecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhh--
Confidence 5899999999885 566556555443 23567899999844433321 22222221 1222222 2245432
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccceeeeeccCccc
Q psy10839 134 FQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGIEVPETTTLKIVTVRTSPKI 194 (232)
Q Consensus 134 ~~~~~dIpDP~~~~~~~~fe~~~~~~~~I~~~v~~ll~~L~~~l~~~~~~~~~~~~~~~~~ 194 (232)
-...-.|++|..... +-|+...|+.+..-=+..+.++.-+..--||..||.
T Consensus 165 --Lva~pgd~~Ycrlsi--------n~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~ 215 (315)
T KOG0820|consen 165 --LVARPGDSLYCRLSI--------NVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKN 215 (315)
T ss_pred --hccCCCCchhceeeh--------hhHHhhcchhheeecccccCCCCccccceeEeecCC
Confidence 123445666665443 667777888887766666766655555555555553
No 207
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=20.22 E-value=1.2e+02 Score=26.90 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccC
Q psy10839 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60 (232)
Q Consensus 16 ~~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~ 60 (232)
...|+|.|.++...+..+-.+|+.+ |. .++.+..+|+..|
T Consensus 87 d~~VVvyc~~~~~~a~~~~~~l~~~----G~-~~v~~l~GG~~~W 126 (281)
T PRK11493 87 DKHLVVYDEGNLFSAPRAWWMLRTF----GV-EKVSILAGGLAGW 126 (281)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHh----cC-CcEEEcCCCHHHH
Confidence 4589999998876555554555443 44 4688889998876
No 208
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=20.17 E-value=3.9e+02 Score=24.11 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=48.2
Q ss_pred CeEEEEcC--CCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC---C-Cc-eeccC
Q psy10839 17 KSVLFLCR--DNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT---E-HV-VREIT 89 (232)
Q Consensus 17 ~~ILFVCt--gNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl---~-hr-sr~lt 89 (232)
|||||+.- |-..|-.+.+.+=+- -.+..+ ++.+.-+--.+ -|.++.+...+.|.+.|+|. + |. .+.--
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~l-k~kyk~--dfvI~N~ENaa--~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei 75 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQL-KSKYKI--DFVIVNGENAA--GGFGITEKIYKELLEAGADVITLGNHTWDQKEI 75 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHH-HHhhcC--cEEEEcCcccc--CCcCCCHHHHHHHHHhCCCEEecccccccchHH
Confidence 58999864 888888887766322 222222 34444333222 37889999999999999996 2 62 22211
Q ss_pred ccccCCccEEE
Q psy10839 90 KDDFYKFDYII 100 (232)
Q Consensus 90 ~~dl~~aDlII 100 (232)
-+.+.+.|.||
T Consensus 76 ~~~i~~~~~il 86 (266)
T COG1692 76 LDFIDNADRIL 86 (266)
T ss_pred HHHhhccccee
Confidence 23455666654
No 209
>PRK11539 ComEC family competence protein; Provisional
Probab=20.12 E-value=1.5e+02 Score=30.36 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=43.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEeeeccCCCCCCCCHHHHHHHHHcCCCC
Q psy10839 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81 (232)
Q Consensus 17 ~~ILFVCtgNicRSpmAEailr~l~~~~gl~~~i~V~SAG~~~~~~G~~~dp~Ai~vL~e~GIdl 81 (232)
-.||.|-++.+-.|- .+.++++.- .++.|.|+|-.+. -|. ||+++++-+++.|+.+
T Consensus 658 ~dvL~vpHHGS~tSs-s~~fl~~v~------P~~aiiS~g~~Nr-ygh-P~~~v~~rl~~~g~~~ 713 (755)
T PRK11539 658 ATLLQVPHHGSNTSS-SLPFIRAVN------GKVALASASRYNA-WRL-PSVKVKQRYQQQGYQW 713 (755)
T ss_pred CCEEEeCCCCCCCCC-hHHHHHhcC------CCEEEEeCCCCCC-CCC-CCHHHHHHHHHcCCeE
Confidence 468999888766663 345666653 6899999997653 365 8999999999999986
No 210
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=20.11 E-value=1.2e+02 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=25.6
Q ss_pred CeEEEEcCCCchHHH--HHHHHHHHHHHhcCCCCcEEEEEeeecc
Q psy10839 17 KSVLFLCRDNYMRSP--MIKSLFKEMLAMANQTNEWIVESAGIGW 59 (232)
Q Consensus 17 ~~ILFVCtgNicRSp--mAEailr~l~~~~gl~~~i~V~SAG~~~ 59 (232)
|++|++|.||.-|.= ..-.+.+.+ +++.. +++.+..+|+.+
T Consensus 1 ~~~lVlGiGN~L~gDDGvG~~v~~~L-~~~~~-~~v~vid~gt~~ 43 (156)
T PRK11544 1 MTDVVLTVGNSMMGDDGAGPLLAEKL-AAAPK-GGWVVIDGGSAP 43 (156)
T ss_pred CcEEEEEeCccccccCcHHHHHHHHH-hccCC-CCeEEEECCCCH
Confidence 468999999999862 111222222 22333 378999999854
Done!