RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10839
(232 letters)
>gnl|CDD|238063 cd00115, LMWPc, Low molecular weight phosphatase family;.
Length = 141
Score = 103 bits (258), Expect = 5e-28
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
K VLF+C N RSPM +++F+ + + V+SAG W VG DPRA
Sbjct: 1 KKVLFVCTGNICRSPMAEAIFRHLAP----KLDIEVDSAGTSGWHVGGRPDPRAIAVLAE 56
Query: 77 YGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQ 135
+G+D + H R++T+DDF +FD II DE++L+ L E PP A++ LG +
Sbjct: 57 HGIDISGHRARQLTEDDFDEFDLIITMDESNLAELL-EPPPGGRAKVELLGEYA------ 109
Query: 136 GPSDLPDPF 144
G ++PDP+
Sbjct: 110 GDREVPDPY 118
>gnl|CDD|223471 COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction
mechanisms].
Length = 139
Score = 85.4 bits (212), Expect = 3e-21
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
VLF+C N RSPM ++L + + + V+SAG G G+ DPRA E
Sbjct: 2 MMKVLFVCTGNICRSPMAEALLRHLAP-----DNVEVDSAGTGGH-PGEPPDPRAVEVLA 55
Query: 76 MYGLDT-EHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+G+D H +++T++DF +FD II DE++ + L AP +
Sbjct: 56 EHGIDISGHRSKQLTEEDFDEFDLIITMDESNAADLCPLAPGN------------TLLLE 103
Query: 135 QGPSDLPDPFFLKTKELINALDDI 158
++PDP++ +E I
Sbjct: 104 YEHWEVPDPYYGSGEEFEEVYRLI 127
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein
phosphatase.
Length = 138
Score = 83.5 bits (207), Expect = 2e-20
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
VLF+C N RSPM ++LF+ +L A ++ V+SAG G DPRA E + +G
Sbjct: 1 VLFVCTGNICRSPMAEALFRALLPKA-LGDKIEVDSAGTEAL-PGGSADPRAVEVMKEHG 58
Query: 79 LDT-EHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGP 137
+D H R++T++ FD I+ D + + AP A+++ LG
Sbjct: 59 IDISGHRARQLTEELLKSFDLILTMDGEHIRDICPIAPGGRRAKVMLLGHHW-------- 110
Query: 138 SDLPDPF 144
D+PDP+
Sbjct: 111 -DIPDPY 116
>gnl|CDD|197586 smart00226, LMWPc, Low molecular weight phosphatase family.
Length = 134
Score = 78.3 bits (193), Expect = 2e-18
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
+LF+C N RSPM ++LFK + + ++SAG G W VG G DPRA + + +G
Sbjct: 1 ILFVCTGNICRSPMAEALFKAYVG-----DRVKIDSAGTGAW-VGGGADPRAVKVLKEHG 54
Query: 79 LDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPS 138
+D H ++T DF D ++A D + L + PP S A++ G +
Sbjct: 55 IDLSHHASQLTSSDFKNADLVLAMDGSHLRNICRLKPP-SRAKVELFGHYV--------- 104
Query: 139 DLPDPFF 145
D+ DP++
Sbjct: 105 DVDDPYY 111
>gnl|CDD|182256 PRK10126, PRK10126, tyrosine phosphatase; Provisional.
Length = 147
Score = 49.1 bits (117), Expect = 1e-07
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
+L +C N RSP + L + E VESAG+G VGKG DP A +
Sbjct: 5 ILVVCVGNICRSPTAERLLQRYHP------ELKVESAGLGAL-VGKGADPTAISVAAEHQ 57
Query: 79 LDTE-HVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGP 137
L E H R+I++ +D I+ ++ + L E P+ +++ G +
Sbjct: 58 LSLEGHCARQISRRLCRNYDLILTMEKRHIERL-CEMAPEMRGKVMLFG------HWDNE 110
Query: 138 SDLPDPFFLKTKELINALDDIIHR 161
++PDP + K++E A+ ++ R
Sbjct: 111 CEIPDP-YRKSREAFEAVYTLLER 133
>gnl|CDD|138553 PRK11391, etp, phosphotyrosine-protein phosphatase; Provisional.
Length = 144
Score = 41.5 bits (97), Expect = 6e-05
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 18 SVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMY 77
S+L +C N RSP+ + L ++ L V+SAG+ V D A + +
Sbjct: 4 SILVVCTGNICRSPIGERLLRKRLPGVK------VKSAGVHGL-VKHPADATAADVAANH 56
Query: 78 GLDTE-HVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQG 136
G+ E H R++T + +D I+A + ++ + AP ++ G +
Sbjct: 57 GVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTML-FGQWLE------ 109
Query: 137 PSDLPDPFFLKTKELINALDDIIHR 161
++PDP + K+++ + ++ R
Sbjct: 110 QKEIPDP-YRKSQDAFEHVYGMLER 133
>gnl|CDD|237415 PRK13530, PRK13530, arsenate reductase; Provisional.
Length = 133
Score = 37.4 bits (87), Expect = 0.002
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
KK++ FLC N RS M + K+ L ++W V SAGI G++P A +
Sbjct: 1 MNKKTIYFLCTGNSCRSQMAEGWGKQYLG-----DKWNVYSAGIE----AHGVNPNAIKA 51
Query: 74 CEMYGLD-TEHVVREITKDDFYKFDYII 100
+ G+D + I D D ++
Sbjct: 52 MKEVGIDISNQTSDIIDNDILNNADLVV 79
>gnl|CDD|131738 TIGR02691, arsC_pI258_fam, arsenate reductase (thioredoxin). This
family describes the well-studied thioredoxin-dependent
arsenate reductase of Staphylococcus aureaus plasmid
pI258 and other mechanistically similar arsenate
reductases. The mechanism involves an intramolecular
disulfide bond cascade, and aligned members of this
family have four absolutely conserved Cys residues. This
group of arsenate reductases belongs to the
low-molecular weight protein-tyrosine phosphatase family
(pfam01451), as does a group of glutathione/glutaredoxin
type arsenate reductases (TIGR02689). At least two
other, non-homologous groups of arsenate reductases
involved in arsenical resistance are also known. This
enzyme reduces arsenate to arsenite, which may be more
toxic but which is more easily exported [Cellular
processes, Detoxification].
Length = 129
Score = 34.8 bits (80), Expect = 0.011
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
+ FLC N RS M + K+ L +EW V SAGI G++P A + + G
Sbjct: 1 IYFLCTGNSCRSQMAEGWGKKYLG-----DEWEVYSAGIE----AHGLNPNAVKAMKEVG 51
Query: 79 LD-TEHVVREITKDDFYKFDYII 100
+D + I D K D ++
Sbjct: 52 IDISNQTSDLIDLDILNKADLVV 74
>gnl|CDD|203546 pfam06917, Pectate_lyase_2, Periplasmic pectate lyase. This family
consists of several Enterobacterial periplasmic pectate
lyase proteins (EC:4.2.2.2). A major virulence
determinant of the plant-pathogenic enterobacterium
Erwinia chrysanthemi is the production of pectate lyase
enzymes that degrade plant cell walls.
Length = 533
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 126 GTFTRKAKFQGPSDLPD-PFFLKTKEL--INALDDIIHRGYWYLR 167
G + + S P F TK L +NA +D+I+ +
Sbjct: 167 GEYGKPMGALWQSKFEQQPPFFATKGLSFLNAGNDLIYSASLLYK 211
>gnl|CDD|226924 COG4551, COG4551, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 109
Score = 27.5 bits (61), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKE 39
K +LF+C N +RSP + +F
Sbjct: 2 KRILFICSRNRLRSPTAEVMFAT 24
>gnl|CDD|164890 PHA02085, PHA02085, hypothetical protein.
Length = 87
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 38 KEMLAMANQTNEWIVESAGIGWWD 61
K M A + N+WI + G WW+
Sbjct: 11 KAMFARRHDCNQWIADKMGTDWWE 34
>gnl|CDD|223230 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide
(SAICAR) synthase [Nucleotide transport and metabolism].
Length = 247
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 134 FQGPSDLPDPFF---------LKTKELINALDDIIHRGYWYLRGFLDTLGIEVPET 180
+LPDP + T E I + ++ + L+ GI + +
Sbjct: 121 LYKNDELPDPIVTDEHISALGIATPEEIEEIKELALKINEVLKDLFAKRGIILVDF 176
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2.
E1, a highly conserved small protein present universally
in eukaryotic cells, is part of cascade to attach
ubiquitin (Ub) covalently to substrate proteins. This
cascade consists of activating (E1), conjugating (E2),
and/or ligating (E3) enzymes and then targets them for
degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Ubiquitin-E1 is a
single-chain protein with a weakly conserved two-fold
repeat. This CD represents the second repeat of Ub-E1.
Length = 435
Score = 28.0 bits (63), Expect = 5.0
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 142 DPFFLKTKELINALDDIIHRGY------WYLRGFLD--TLG 174
D F+ K + NALD++ R Y +Y + L+ TLG
Sbjct: 93 DEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLG 133
>gnl|CDD|113458 pfam04690, YABBY, YABBY protein. YABBY proteins are a group of
plant-specific transcription involved in the
specification of abaxial polarity in lateral organs.
Length = 170
Score = 27.1 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 168 GFLDT-LGIEVPETTTLKIVTVR 189
F T L + VP T+ IVTVR
Sbjct: 16 NFCTTILAVSVPYTSLFNIVTVR 38
>gnl|CDD|107271 cd06276, PBP1_FucR_like, Ligand-binding domain of a transcription
repressor, FucR, which functions as a molecular sensor
of L-fucose availability. Ligand-binding domain of a
transcription repressor, FucR, which functions as a
molecular sensor of L-fucose availability. FcuR acts as
an inducer of fucRRIAK and as a corepressor of another
locus that regulates production of fucosylated glycans.
FcuR and its close homologs in this group are a member
of the LacI-GalR family repressors that are composed of
two functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal ligand-binding
domain, which is homologous to the sugar-binding domain
of ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 247
Score = 27.2 bits (61), Expect = 6.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 63 GKGMDPRAKER-----CEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFL 110
K P+ +R C+ Y ++TE ++ + + K D I +TDL FL
Sbjct: 126 NKTAIPKEIKRGFERFCKDYNIETE-IINDYENREIEKGDLYIILSDTDLVFL 177
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 27.6 bits (62), Expect = 6.8
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 146 LKTKELINALDDIIHRGYWYLRGFLDTLGIEVPETTTLKIVT 187
+K LINA +R +L LD LG++ P+ L
Sbjct: 68 VKVLRLINA-----YRSRGHLHANLDPLGLKRPDVPELDPEF 104
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat
2-like. E1, a highly conserved small protein present
universally in eukaryotic cells, is part of cascade to
attach ubiquitin (Ub) covalently to substrate proteins.
This cascade consists of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes and then targets them
for degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. A set of novel molecules
with a structural similarity to Ub, called Ub-like
proteins (Ubls), have similar conjugation cascades. In
contrast to ubiquitin-E1, which is a single-chain
protein with a weakly conserved two-fold repeat, many of
the Ubls-E1are a heterodimer where each subunit
corresponds to one half of a single-chain E1. This CD
represents the family homologous to the second repeat of
Ub-E1.
Length = 234
Score = 26.8 bits (59), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 138 SDLPDPFFLKTKELINALDDIIHRGY 163
D D FF + ++NALD+II R Y
Sbjct: 82 QDFNDTFFEQFHIIVNALDNIIARRY 107
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 27.2 bits (61), Expect = 9.3
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 154 ALDDIIHRGYWYLRGFLDTLGIEVPETTTLK 184
+D H YL TL IE ET T +
Sbjct: 360 LIDGGFHAPTMYLPV-DGTLMIEPTETETKE 389
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,766,747
Number of extensions: 1093996
Number of successful extensions: 1051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 23
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)