RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10839
(232 letters)
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural
genomics center for infect disease, parasitic protozoan,
dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A*
3ily_A 3ido_A*
Length = 161
Score = 120 bits (304), Expect = 8e-35
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 15 GKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERC 74
G +LF+C N RSP +++ K+++ + T ++I +SAG + G+ D R ++
Sbjct: 3 GSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVG 62
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+ G + + R + DF FDYI A D + L P ++ K+ F K
Sbjct: 63 KSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDRCPEQYKQKIFKMVDFCTTIKT 122
Query: 135 QGPSDLPDPFF 145
++PDP++
Sbjct: 123 T---EVPDPYY 130
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, hydrolase, protein-ligand complex; HET:
NLA; 1.50A {Homo sapiens} PDB: 5pnt_A* 1xww_A 1bvh_A
1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Length = 157
Score = 114 bits (289), Expect = 1e-32
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
+ KSVLF+C N RSP+ +++F++++ N + W V+SA +++G D R +
Sbjct: 3 QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSC 62
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAP--PDSSAQLVKLGTFTRK 131
+ +G+ HV R+ITK+DF FDYI+ DE++L L ++ A++ LG++
Sbjct: 63 MKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDP- 121
Query: 132 AKFQGPSDLPDPFF 145
Q + DP++
Sbjct: 122 ---QKQLIIEDPYY 132
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase;
HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP:
c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Length = 161
Score = 113 bits (286), Expect = 4e-32
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKE 72
+ K SV F+ N+ RSPM +++FK + AN N + ++S G + VG+ D R
Sbjct: 5 KPKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVS 64
Query: 73 RCEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKA 132
C+ +G+ H ++I F ++DYII DE++++ L+ P S A++ G +
Sbjct: 65 ICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTND 124
Query: 133 KFQGPSDLPDPFF 145
+ + DP++
Sbjct: 125 GTVQ-TIIEDPWY 136
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, structural genomics; 1.90A {Thermus
thermophilus}
Length = 161
Score = 111 bits (279), Expect = 5e-31
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
VLF+C N RSPM + +F+++L + + V+SAG G W VG+ MDPRA+ E
Sbjct: 4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLE 63
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQ 135
G HV R +T++D +D+I+ D +L + P++ ++ +
Sbjct: 64 EEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVL-RRFPEARGKVRLVLEEL------ 116
Query: 136 GPSDLPDPFF 145
G ++ DP++
Sbjct: 117 GGGEVQDPYY 126
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight,
protein tyrosine phosphatase, bacterial phosphatase; NMR
{Campylobacter jejuni}
Length = 156
Score = 106 bits (268), Expect = 2e-29
Identities = 29/130 (22%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
K +LF+C N RSPM + + K+++ AN E+ + SAG G+GM K +
Sbjct: 2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEHDGEGMHYGTKNKLAQ 61
Query: 77 YGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQ 135
++ +++T+ + D++I D ++ + ++ +++K+ F+
Sbjct: 62 LNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNF-TNTQNKVLKITDFSPSL--- 117
Query: 136 GPSDLPDPFF 145
++PDP++
Sbjct: 118 NYDEVPDPWY 127
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas
foetus} SCOP: c.44.1.1
Length = 146
Score = 104 bits (262), Expect = 1e-28
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 30/166 (18%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK+VLF+C N RSP + + ++M+ ++ I++SA + VG+ D R+++ C+
Sbjct: 4 KKAVLFVCLGNICRSPACEGICRDMVG-----DKLIIDSAATSGFHVGQSPDTRSQKVCK 58
Query: 76 MYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
G+D ++ R+ITK DF KFD I A D++ LS + P + A++V
Sbjct: 59 SNGVDISKQRARQITKADFSKFDVIAALDQSILSDINSMKPSNCRAKVVLFNPP------ 112
Query: 135 QGPSDLPDPF-----FLKTKELINALDDIIHRGYWYLRGFLDTLGI 175
+ + DP+ F I+ ++ FL G+
Sbjct: 113 ---NGVDDPYYSSDGFPTMFASISK----------EMKPFLTEHGL 145
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase;
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
1u2q_A
Length = 163
Score = 104 bits (261), Expect = 2e-28
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
V F+C N RSPM + +F + L + V SAG G W VG D RA
Sbjct: 4 PLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLR 63
Query: 76 MYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQ 135
+G T+H ++ + D ++A D LR + ++ L +F ++
Sbjct: 64 AHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQLGVEAARVRM--LRSFDPRSGTH 120
Query: 136 GPSDLPDPFF 145
D+ DP++
Sbjct: 121 A-LDVEDPYY 129
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate
binding, hydrolase; NMR {Escherichia coli K12}
Length = 167
Score = 103 bits (260), Expect = 4e-28
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
++L +C N RSP + L + E VESAG+G VGKG DP A
Sbjct: 22 FNNILVVCVGNICRSPTAERLLQRYHP------ELKVESAGLGAL-VGKGADPTAISVAA 74
Query: 76 MYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+ L H R+I++ +D I+ ++ + L A P+ +++ G +
Sbjct: 75 EHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMA-PEMRGKVMLFG------HW 127
Query: 135 QGPSDLPDPFF 145
++PDP+
Sbjct: 128 DNECEIPDPYR 138
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 101 bits (253), Expect = 7e-27
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 24/166 (14%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
G ++F+C N RSPM ++LFK + V SAG+ GK P A E
Sbjct: 32 RGSMDIIFVCTGNTSRSPMAEALFKSIAEREGL--NVNVRSAGVFASPNGK-ATPHAVEA 88
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAK 133
+ HV +T++ D ++A + ++ L +
Sbjct: 89 LFEKHIALNHVSSPLTEELMESADLVLAMTHQHKQIIA-SQFGRYRDKVFTLKEYVT--- 144
Query: 134 FQGPSDLPDPF------FLKTKELINALDDIIHRGYWYLRGFLDTL 173
D+ DPF + +T++ + L LR L
Sbjct: 145 -GSHGDVLDPFGGSIDIYKQTRDELEEL----------LRQLAKQL 179
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase,
hydrolase; 1.03A {Staphylococcus aureus}
Length = 158
Score = 97.5 bits (244), Expect = 7e-26
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 12 LFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAK 71
F+G V F+C N RSPM +++ ++ L N + V S G G W++G+ +
Sbjct: 2 YFQGMVDVAFVCLGNICRSPMAEAIMRQRLKDRNIH-DIKVHSRGTGSWNLGEPPHEGTQ 60
Query: 72 ERCEMYGLDTEHVV-REITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTR 130
+ + + + ++ D FDYI+A D++++ ++ P+ QL KL F+
Sbjct: 61 KILNKHNIPFDGMISELFEATD--DFDYIVAMDQSNVDNIK-SINPNLKGQLFKLLEFSN 117
Query: 131 KAKFQGPSDLPDPFF 145
SD+PDP++
Sbjct: 118 ----MEESDVPDPYY 128
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia
coli}
Length = 150
Score = 96.0 bits (240), Expect = 2e-25
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
S+L +C N RSP+ + L + +L + SAG+G V D A E
Sbjct: 8 FDSILVICTGNICRSPIGERLLRRLLP------SKKINSAGVGAL-VDHTADESAIRVAE 60
Query: 76 MYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
GL H + T ++D ++ + + L + P++ + + G +
Sbjct: 61 KNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQIS-RIAPEARGKTMLFG------HW 113
Query: 135 QGPSDLPDPFF 145
++PDP+
Sbjct: 114 LDSKEIPDPYR 124
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Length = 168
Score = 96.1 bits (240), Expect = 4e-25
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
S+L +C N RSP+ + L + +L + SAG+G V D A E
Sbjct: 26 FDSILVICTGNICRSPIGERLLRRLLP------SKKINSAGVGAL-VDHAADESAIRVAE 78
Query: 76 MYGLD-TEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
GL H + T ++D ++ + + L + P++ + + G +
Sbjct: 79 KNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQIS-RIAPEARGKTMLFG------HW 131
Query: 135 QGPSDLPDPFF 145
++PDP+
Sbjct: 132 LDSKEIPDPYR 142
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase;
1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A
1z2e_A 2ipa_B
Length = 139
Score = 47.6 bits (114), Expect = 2e-07
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
K + FLC N RS M + K+ L +EW V SAGI G++P A + +
Sbjct: 3 NKIIYFLCTGNSCRSQMAEGWAKQYLG-----DEWKVYSAGI----EAHGLNPNAVKAMK 53
Query: 76 MYGLDTE-HVVREITKDDFYKFDYII 100
G+D I D D ++
Sbjct: 54 EVGIDISNQTSDIIDSDILNNADLVV 79
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium
glutamicum}
Length = 148
Score = 47.7 bits (114), Expect = 3e-07
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KSVLF+C N +S M +L ++ + + + SAG +G++ + E
Sbjct: 20 MKSVLFVCVGNGGKSQMAAALAQKYAS-----DSVEIHSAGT---KPAQGLNQLSVESIA 71
Query: 76 MYGLDTE-HVVREITKDDFYKFDYII 100
G D + + I + D ++
Sbjct: 72 EVGADMSQGIPKAIDPELLRTVDRVV 97
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid,
oxidoreductase; 1.12A {Staphylococcus aureus} SCOP:
c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A
2cd7_A 1lk0_A
Length = 131
Score = 45.6 bits (109), Expect = 1e-06
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+ N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 3 KKTIYFISTGNSARSQMAEGWGKEILG-----EGWNVYSAGI----ETHGVNPKAIEAMK 53
Query: 76 MYGLDTE-HVVREITKDDFYKFDYII 100
+D H I D + D ++
Sbjct: 54 EVDIDISNHTSDLIDNDILKQSDLVV 79
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form,
structural genomics, PSI, protein structure initiative;
2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Length = 124
Score = 44.1 bits (105), Expect = 3e-06
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
VLF+C N RS M ++LF M W ESAG+ + + +D K G
Sbjct: 2 VLFVCIHNTARSVMAEALFNAM------AKSWKAESAGV---EKAERVDETVKRLLAERG 52
Query: 79 LDTEHVVREITKDDFYKFDYII 100
L + R + + + FD I+
Sbjct: 53 LKAKEKPRTVDEVNLDDFDLIV 74
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase;
NMR {Synechocystis} PDB: 2l18_A 2l19_A
Length = 134
Score = 42.6 bits (101), Expect = 1e-05
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGI--GWWDVGKGMDPRAKER 73
K V+F+C+ N RS M + K + A + V S G+ + P A
Sbjct: 4 MKKVMFVCKRNSCRSQMAEGFAKTLGA-----GKIAVTSCGLESS------RVHPTAIAM 52
Query: 74 CEMYGLDTE-HVVREITKDDFYKFDYII 100
E G+D I + +D +I
Sbjct: 53 MEEVGIDISGQTSDPIENFNADDYDVVI 80
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 40.5 bits (95), Expect = 1e-04
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
VLF+C N RS + +L + V SAG + P E
Sbjct: 79 SPVPQVLFICVHNAGRSQIASALLSHYAG-----SSVEVRSAGS---LPASEIHPLVLEI 130
Query: 74 CEMYGLDTEHVV-REITKDDFYKFDYII 100
G++ + +T D DY+I
Sbjct: 131 LSERGVNISDAFPKPLTDDVIRASDYVI 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.018
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 42/126 (33%)
Query: 24 RDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKE-RCEMYGLDTE 82
D Y S + + W+ RA + YG
Sbjct: 1633 MDLYKTSKAAQDV-----------------------WN-------RADNHFKDTYGFSIL 1662
Query: 83 HVVREITKDDFYKFDYI----IATDETDLSFLRLEAPPDSSAQLVK----LGTFTRKAKF 134
+V + F I + + + F E D + K + + F
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 135 QGPSDL 140
+ L
Sbjct: 1720 RSEKGL 1725
Score = 32.3 bits (73), Expect = 0.13
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 26/140 (18%)
Query: 86 REITKDDFYK---FDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQGPSDLPD 142
R++ + Y D I + ET L + ++ G + PS+ PD
Sbjct: 174 RDLYQT--YHVLVGDLIKFSAET---LSELIRTTLDAEKVFTQG-LNILEWLENPSNTPD 227
Query: 143 PFFLKTKEL---INALDDIIHRGYWYLRGFLDTLGIEVPE-TTTLKIVTVRTSPKI---- 194
+L + + + + + H Y+ LG E + LK T + +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAH----YVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 195 --KSSTWNAWRLEMSSLQAL 212
++ +W ++ +S +A+
Sbjct: 283 IAETDSWESF--FVSVRKAI 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.082
Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 70/227 (30%)
Query: 26 NYMRSPMIKSLFKEMLAMANQTNEWIVESA-GIGWWDVGKGMDPRAKERCEMYGLDTEHV 84
N + + +F + L++ + I + W+DV + M ++ H
Sbjct: 364 NVLEPAEYRKMF-DRLSVFPP-SAHIPTILLSLIWFDV--------IKSDVMVVVNKLHK 413
Query: 85 VREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVK--LGTFTRKAKFQGPSDLPD 142
+ K I + +L L+ ++ L + + + F DL
Sbjct: 414 YSLVEKQPKESTISI-----PSI-YLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIP 466
Query: 143 PFFLKTKELINALDDIIHRGYWY------LRG-------------FLDTLGIEVPETTTL 183
P+ LD Y+Y L+ FLD +E
Sbjct: 467 PY----------LD-----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ------ 505
Query: 184 KIVTVRTSPKIKSSTWNAWRLEMSSLQALVSRTKFKDRITVKSTHRK 230
KI+ + AW S L L +K I +
Sbjct: 506 ---------KIRHDS-TAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 32.9 bits (74), Expect = 0.095
Identities = 41/266 (15%), Positives = 75/266 (28%), Gaps = 101/266 (37%)
Query: 9 GGFLFEGKKSVLFL--CRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGM 66
G GK + + L C +K M I W ++
Sbjct: 159 LGS---GK-TWVALDVCLS-----------YKVQCKMDF----------KIFWLNLK--- 190
Query: 67 DPRAKERCEMYGLDTEHVVREITKDDFYKFD--YIIATDETDLSFLRLEAPPDSSAQLVK 124
C ++ V E+ + Y+ D + +D + LR+ A+L +
Sbjct: 191 ------NC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRR 236
Query: 125 LGTFTRKAKFQGPSDL-----------PDPFFLKTKELI-----NALDDIIHRGYWYLRG 168
L K + L + F L K L+ D + ++
Sbjct: 237 L--LKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 169 FLDTLGIEVPETTTL--KIVTVR----------TSP----------KIKSSTWNAWR--- 203
++ + E +L K + R T+P + +TW+ W+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 204 -------LEMS--SLQALVSRTKFKD 220
+E S L+ R F
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDR 377
Score = 27.1 bits (59), Expect = 5.5
Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 59/239 (24%)
Query: 6 EVWGGFLFEGKKSVLFLCRD----NYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWD 61
+ W F K +L R +++ + + + +M +E V+S + + D
Sbjct: 257 KAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLD 312
Query: 62 VGKGMDPRAKERCE-------MYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEA 114
PR E + E + + D +K S L +
Sbjct: 313 CRPQDLPR--EVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 115 PPDSSAQLVKLGTFTRKAKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLG 174
P + +L F P P L W+
Sbjct: 368 PAEYRKMFDRLSVF--------PPSAHIP--TILLSL-----------IWF--------- 397
Query: 175 IEVPETTTLKIVT--VRTSPKIKSSTWNAWRLEMSSLQALVSRTKFKDRITVKSTHRKL 231
+V ++ + +V + S K + + S+ L + K ++ + HR +
Sbjct: 398 -DVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIY-LELKVKLENEYAL---HRSI 449
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.5
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 108 SFLRLEAPPDSSAQL-VK 124
+ L+L A DS+ L +K
Sbjct: 27 ASLKLYAD-DSAPALAIK 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 28.0 bits (62), Expect = 3.0
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 22 LCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81
+ RD M+ P+ K + DP A E M
Sbjct: 344 IVRDALMQ-PVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGD 402
Query: 82 EHVVREITKDDF 93
+ + ++ D
Sbjct: 403 KLLEPVVSMWDM 414
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 27.7 bits (62), Expect = 3.3
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 22 LCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDT 81
+ RD M+ P+ K + DP A E M
Sbjct: 222 IVRDALMQ-PVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGD 280
Query: 82 EHVVREITKDDF 93
+ + ++ D
Sbjct: 281 KLLEPVVSMSDM 292
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function;
2.10A {Legionella pneumophila} PDB: 3fxe_A
Length = 57
Score = 25.5 bits (55), Expect = 3.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 147 KTKELINALDDIIHRGYWYLRGFLDTLG 174
+ + ++ AL+D I +G W FL +G
Sbjct: 9 QKETILKALNDAIEKGPWDKSNFLRVIG 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,614,581
Number of extensions: 208846
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 32
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)