RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10839
(232 letters)
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 159
Score = 78.8 bits (193), Expect = 5e-19
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWI-VESAGIGWWDVGKGMDPRAKERC 74
K SV F+ N+ RSPM +++FK + AN N + ++S G + VG+ D R C
Sbjct: 5 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSIC 64
Query: 75 EMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+ +G+ H ++I F ++DYII DE++++ L+ P S A++ G +
Sbjct: 65 KQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGT 124
Query: 135 QGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLD 171
+ DP++ ++ I + + FL
Sbjct: 125 VQT-IIEDPWYGDIQDFEYNFKQITYF----SKQFLK 156
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 157
Score = 78.4 bits (192), Expect = 6e-19
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 14 EGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKER 73
+ KSVLF+C N RSP+ +++F++++ N ++ W+++S + W+VG+ DPRA
Sbjct: 3 QVTKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSC 62
Query: 74 CEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAP--PDSSAQLVKLGTFTRK 131
+G++T H R++TK+DF FDYI+ DE++L L ++ + A++ LG++
Sbjct: 63 LRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDP- 121
Query: 132 AKFQGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTL 173
Q + DP++ + + R FL+ +
Sbjct: 122 ---QKQLIIEDPYYGNDADFETVYQQCVRC----CRAFLEKV 156
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus
[TaxId: 5724]}
Length = 146
Score = 72.9 bits (178), Expect = 6e-17
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK+VLF+C N RSP + + ++M+ ++ I++SA + VG+ D R+++ C+
Sbjct: 4 KKAVLFVCLGNICRSPACEGICRDMVG-----DKLIIDSAATSGFHVGQSPDTRSQKVCK 58
Query: 76 MYG-LDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
G ++ R+ITK DF KFD I A D++ LS + P + A++ F
Sbjct: 59 SNGVDISKQRARQITKADFSKFDVIAALDQSILSDINSMKPSNCRAKV---------VLF 109
Query: 135 QGPSDLPDPFFLKTKELINALDDIIHRGYWYLRGFLDTLGI 175
P+ + DP++ + I ++ FL G+
Sbjct: 110 NPPNGVDDPYY-SSDGFPTMFASISKE----MKPFLTEHGL 145
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 44.5 bits (104), Expect = 1e-06
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 12/139 (8%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEM 76
K + FLC N RS M + K+ L + + K E+
Sbjct: 2 KIIYFLCTGNSCRSQMAEGWAKQYLG------DEWKV--YSAGIEAHGLNPNAVKAMKEV 53
Query: 77 YGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKFQG 136
+ I D D ++ + P F A+ QG
Sbjct: 54 GIDISNQTSDIIDSDILNNADLVVTLCGDAADKCPMTPPHVKREHW----GFDDPARAQG 109
Query: 137 PSDLPDPFFLKTKELINAL 155
+ FF + ++ I
Sbjct: 110 TEEEKWAFFQRVRDEIGNR 128
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus
aureus [TaxId: 1280]}
Length = 130
Score = 43.7 bits (102), Expect = 2e-06
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 26/147 (17%)
Query: 16 KKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCE 75
KK++ F+ N RS M + KE+L W V SAGI G++P+A E +
Sbjct: 2 KKTIYFISTGNSARSQMAEGWGKEILGE-----GWNVYSAGIETH----GVNPKAIEAMK 52
Query: 76 MYGLDTEHVV-REITKDDFYKFDYIIATDETDLSFLRLEAPPDSSAQLVKLGTFTRKAKF 134
+D + I D + D ++ + + P
Sbjct: 53 EVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPP----------------NVK 96
Query: 135 QGPSDLPDPFFLKTKELINALDDIIHR 161
+ DP + E D+I
Sbjct: 97 KEHWGFDDPAGKEWSEFQRVRDEIKLA 123
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 124
Score = 38.3 bits (88), Expect = 2e-04
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 19 VLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYG 78
VLF+C N RS M ++LF AMA + + +D K G
Sbjct: 2 VLFVCIHNTARSVMAEALFN---AMAKSWKAESAG------VEKAERVDETVKRLLAERG 52
Query: 79 LDTEHVVREITKDDFYKFDYII 100
L + R + + + FD I+
Sbjct: 53 LKAKEKPRTVDEVNLDDFDLIV 74
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.4 bits (75), Expect = 0.013
Identities = 17/112 (15%), Positives = 35/112 (31%)
Query: 3 CCEEVWGGFLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDV 62
+ G + SV + + I + + + N + A D+
Sbjct: 69 EWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDL 128
Query: 63 GKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEA 114
K ++ R E E E+ + D +I D+ D ++ L+
Sbjct: 129 KKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKD 180
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.6 bits (58), Expect = 1.7
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 17 KSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWWDVGK---GMD-----P 68
+ V + + P+ ++ + N + A W G+D
Sbjct: 50 RVVSLPDFFTFDKQPLE---YRLSVLPDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASG 106
Query: 69 RAKERCEMYGLDTEHVVREITK 90
+A E + +G E V K
Sbjct: 107 KAPEVFKFFGFTPEGVAERAQK 128
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 26.7 bits (58), Expect = 2.5
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 10/54 (18%)
Query: 141 PDPFF--------LKTKELINALDDI-IHRGYWYLRGFLD-TLGIEVPETTTLK 184
P PFF + + AL + H R + + E +
Sbjct: 371 PKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEE 424
>d1es6a2 b.31.1.1 (A:201-321) EV matrix protein {Ebola virus [TaxId:
205488]}
Length = 121
Score = 25.4 bits (55), Expect = 3.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 173 LGIEVPETTTLKIVTVRTSPK 193
+GIEVPET LK+ + + K
Sbjct: 59 MGIEVPETLVLKLTGKKVTSK 79
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 25.6 bits (55), Expect = 4.5
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 59 WWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKFDYIIATDETDLSFLRLEA 114
++ + + R ++ E+ V E++ + ++DY+I D+ D + L+
Sbjct: 126 KIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH--YAEYDYLIVNDDFDTALTDLKT 179
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 25.0 bits (54), Expect = 6.7
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 32 MIKSLFKEMLAMANQTNEW-IVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITK 90
++ + + A + W A +G G A + +G+ E VVR +
Sbjct: 68 VLPAGVPVVSVEAYVSFGWEKYSHAHVGMSGFGASAP--AGVLYKKFGITVEEVVRTGRE 125
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 365
Score = 25.3 bits (54), Expect = 8.3
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 30 SPMIKSLFKEMLAM-ANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEH 83
SP I +F E+L + + + E + ++G G + +
Sbjct: 53 SPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPIL 107
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 24.4 bits (52), Expect = 8.6
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 1 MRCCEEVWGGFLFEGKKSVLFLCRDNYMRSPMIKSLFKEMLAMANQTNEWIVESAGIGWW 60
+ + EG K+ + + + +L A + W+
Sbjct: 34 VELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWY 93
Query: 61 DV--------GKGMDPR---AKERCEMYGLDTEHVVREITK 90
G A+ E +G ++VV + +
Sbjct: 94 KYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKE 134
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 25.1 bits (54), Expect = 9.1
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 37 FKEMLAMANQTNEWIVESAGIGWWDVGKGMDPRAKERCEMYGLDTEHVVREITKDDFYKF 96
F + + + ++E + ++ P R G E + ++ D K+
Sbjct: 250 FNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKY 309
Query: 97 DYIIATDETDLSFLRL 112
+ D F +
Sbjct: 310 LAGLHIDLYKFFFNKA 325
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 909,326
Number of extensions: 41174
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 18
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)