BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1084
(110 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/92 (91%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKKSKPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 85 KKKSKPVNKDRFISKMFLRGDSVILVLRNPLA 116
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 37 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 96
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 97 KKKAKPVNKDRFISKMFLRGDSVILVLRNPLA 128
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVLRNPLA 115
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 26 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 85
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 86 KKKAKPVNKDRFISKMFLRGDSVILVLRNPLA 117
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 89/92 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+AGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK+SKPVNKDR+I+KMFLRGDSVIL+L+NPLA
Sbjct: 84 KKRSKPVNKDRYITKMFLRGDSVILVLRNPLA 115
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGDSVIL+++NPLA
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVVRNPLA 115
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 41 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 100
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFI KMFLRGDSVIL+L+NPLA
Sbjct: 101 KKKAKPVNKDRFIPKMFLRGDSVILVLRNPLA 132
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 73
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFI KMFLRGDSVIL+L+NPLA
Sbjct: 74 KKKAKPVNKDRFIPKMFLRGDSVILVLRNPLA 105
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDAPSKNEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 EETNVKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 6 EEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 66 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 106
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 2 EEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 61
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 62 MWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 102
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDTAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKKS+PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKSQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 94/105 (89%), Gaps = 1/105 (0%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA E ++EEEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 1 MADENEAGKKEEEE-FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 59
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
NV+EMWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 60 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ ++ EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENVKE
Sbjct: 7 EDMPEKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 6 EEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 66 MWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 106
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E + ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 4 EATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 63
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 64 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 93/102 (91%), Gaps = 1/102 (0%)
Query: 5 EEPKQ-QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
EEP ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 3 EEPATGKKEEEEFSTGPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 62
Query: 64 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
EMWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 EMWTEVPKTGKGKKKAHPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDAAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 103
Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 2 EEDVTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 61
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 62 MWTEVPKTGKGKKKAMPVNKDRFISKMFLRGDSVIIVLRNP 102
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 92/101 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+E ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 DENAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 94/105 (89%), Gaps = 1/105 (0%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA + ++EEEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 1 MADENQAGKKEEEE-FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 59
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
NV+EMWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 60 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 94/105 (89%), Gaps = 1/105 (0%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA + ++EEEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 1 MADENQAGKKEEEE-FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 59
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
NV+EMWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 60 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 104
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 EDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 90/96 (93%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
++EEE F+TGPLSIL SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 11 KKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 70
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 71 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 106
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 91/101 (90%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDTVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta CCMP2712]
Length = 99
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 87/97 (89%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+E +E F+ GPLS+L DSV+ N QVLINCRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 3 EEGKEDFSAGPLSLLADSVRKNCQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEA 62
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
PR GKGK KSKPVNKDRFISKMFLRGDSVI++LKNP+
Sbjct: 63 PRTGKGKAKSKPVNKDRFISKMFLRGDSVIMVLKNPV 99
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 90/96 (93%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 6 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 65
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 66 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 101
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
++ + E E F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 DDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 MWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 89/96 (92%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
++EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 9 KKEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 69 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
++ + E E F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 69 DDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 128
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 129 MWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNP 169
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 90/109 (82%), Gaps = 4/109 (3%)
Query: 1 MATREEPKQQE----EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCN 56
MAT P E EEE F TGPLS+LT SVK N+QVLINCRNN+KLLGRVKAFDRHCN
Sbjct: 1 MATVTNPSVDELEKREEELFRTGPLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCN 60
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
M+LENVKEMWTE P+ GKGKK S PVNKDRFI K+F+RGDSVIL+L+NP
Sbjct: 61 MILENVKEMWTEIPKTGKGKKGSTPVNKDRFIPKLFIRGDSVILVLRNP 109
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 86/92 (93%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F+TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 24 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK K VNKD+FISKMFLRGDSVIL+L+NPLA
Sbjct: 84 -KKGKAVNKDKFISKMFLRGDSVILVLRNPLA 114
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+E
Sbjct: 7 EDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+ PVN+DRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 86/92 (93%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F+TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 14 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 73
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK K VNKD+FISKMFLRGDSVIL+L+NPLA
Sbjct: 74 -KKGKAVNKDKFISKMFLRGDSVILVLRNPLA 104
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 89/101 (88%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + EEE F TGPLS+L SVK+NTQVLINCRNNKKLLGRV AFDRHCNMVLENV+E
Sbjct: 7 EDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVLENVRE 66
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MW E P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 67 MWAEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 87/94 (92%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE F TGPLS+L SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 15 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 74
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
GKGKKK+ PVN+DRFISKMFLRGDSVI++L+NP
Sbjct: 75 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 108
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/96 (80%), Positives = 85/96 (88%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+EE F TGPLS+LT SVK NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKE+WTE
Sbjct: 7 DKEENEFVTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEV 66
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKG K+KPVNKDRFISKMFLRGDSVIL+L+NP
Sbjct: 67 PKTGKGAAKAKPVNKDRFISKMFLRGDSVILVLRNP 102
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 87/94 (92%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE F TGPLS+L SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 15 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 74
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
GKGKKK+ PVN+DRFISKMFLRGDSVI++L+NP
Sbjct: 75 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 108
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 87/94 (92%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE F TGPLS+L SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 11 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 70
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
GKGKKK+ PVN+DRFISKMFLRGDSVI++L+NP
Sbjct: 71 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 104
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 85/92 (92%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKS 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK+ PVNKDR+ISKMFLRGDSVIL+LKNPLA
Sbjct: 84 -KKNNPVNKDRYISKMFLRGDSVILVLKNPLA 114
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 85/92 (92%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK+ PVNKDR+ISKMFLRGDSVIL+LKNPLA
Sbjct: 84 -KKNNPVNKDRYISKMFLRGDSVILVLKNPLA 114
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 85/92 (92%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK+ PVNKDR+ISKMFLRGDSVIL+LKNPLA
Sbjct: 84 -KKNNPVNKDRYISKMFLRGDSVILVLKNPLA 114
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/94 (79%), Positives = 86/94 (91%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
+EE F GPLS+L SV++NTQVLINCRNNKKLLGRV AFDRHCNMVLENV+EMWTE P+
Sbjct: 3 QEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPK 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 63 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 96
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/107 (84%), Positives = 97/107 (90%), Gaps = 1/107 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE Q+E+EE F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 13 TPEELAQREQEE-FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALK 109
KEMWTE P+ GKGKKKSKPVNKDRFISKMFLRGDSVIL+L+NPL K
Sbjct: 72 KEMWTEVPKTGKGKKKSKPVNKDRFISKMFLRGDSVILVLRNPLQSK 118
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 88/101 (87%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ +EE F GPLS+L SV++NTQVLINCRNNKKLLGRV AFDRHCNMVLENV+E
Sbjct: 58 EDAVIMNQEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVRE 117
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 118 MWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 158
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 87/96 (90%), Gaps = 1/96 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE F TGPLSILT +VK++ QVLINCRNN+K+L RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 72 EEELFNTGPLSILTQAVKNSDQVLINCRNNRKILARVKAFDRHCNMVLENVKEMWTETPR 131
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
GKG +K+KPVNKDR+ISKMFLRGDSVIL+LKNPL
Sbjct: 132 TGKG-RKAKPVNKDRYISKMFLRGDSVILVLKNPLT 166
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 96/105 (91%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE Q+E+EE F TGPLS+LT SVK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENV
Sbjct: 13 TPEELSQREQEE-FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKKSKPVNKDR+ISKMFLRGDSVILIL+NP+A
Sbjct: 72 KEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILILRNPMA 116
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 85/96 (88%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q EE F TGPLSILT +VK+++QVL+ CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 18 QALEEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P+ GKG KK+KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 78 TPQTGKGIKKAKPVNKDRFISKMFLRGDSVILVLRN 113
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS) [Ostreococcus
tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 82/90 (91%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKE+WTE P+ GKG
Sbjct: 13 FTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKG 72
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K+KPVNKDRF+SKMFLRGDSVIL+L+NP
Sbjct: 73 SAKAKPVNKDRFVSKMFLRGDSVILVLRNP 102
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 96/105 (91%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE Q+E+EE F TGPLS+LT SVK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENV
Sbjct: 9 TPEELAQREQEE-FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENV 67
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKKSKP+NKDR+ISKMFLRGDSVIL+L+NPLA
Sbjct: 68 KEMWTEVPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNPLA 112
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 97/105 (92%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE Q+E+EE F TGPLS+LT SVK+NTQVLINCRNN+KLL RVKAFDRHCNMVLENV
Sbjct: 13 TPEELAQREQEE-FNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P++GKGKKK+KPVNKDR+I+KMFLRGDSVIL+L+NPLA
Sbjct: 72 KEMWTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNPLA 116
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR KG
Sbjct: 23 FETGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
+K +PVNKDRFI KMFLRGDSVI++L+NPL
Sbjct: 83 -RKGQPVNKDRFIPKMFLRGDSVIIVLRNPL 112
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 85/92 (92%), Gaps = 1/92 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+L SVK+NTQVLINCRNN+KLLGRVKAFDRHCNMVLENVKEMW E P+ GKG
Sbjct: 24 FKTGPLSVLMTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KK+KP+NKDR+I+KMFLRGDSVIL+LKNP+A
Sbjct: 84 -KKAKPINKDRYIAKMFLRGDSVILVLKNPIA 114
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 98/105 (93%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T +E ++EEEE F+TGPLS+L+ SVK+NTQVLINCRNN+KLLGRVKAFDRHCNMVLENV
Sbjct: 2 TPDELSKREEEE-FSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENV 60
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE PR+GKGKKK+K VNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 61 KEMWTELPRSGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNPLA 105
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/101 (81%), Positives = 91/101 (90%), Gaps = 2/101 (1%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE ++EEE F GPLS+LT SVK NTQVLINCRNN+KLLGRVKAFDRHCNMVLENV+E
Sbjct: 1029 EEDTKKEEE--FNIGPLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVRE 1086
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ GKGKKK+KPVNKDRFISKMFLRGDSVI++LKNP
Sbjct: 1087 MWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLKNP 1127
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 94/103 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + E++ F TGPLS+LT++VK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENVKE
Sbjct: 14 EEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
MWTE PR GKGKKKSKPVNKDRFISK+FLRGDSVIL+L+NPLA
Sbjct: 74 MWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNPLA 116
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LTDSVK+NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FQTGPLSVLTDSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK +PVN+DRFISKMFLRGDSVI++LKNPLA
Sbjct: 84 KKKQQPVNRDRFISKMFLRGDSVIIVLKNPLA 115
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 81/90 (90%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
+ TGPLS+LT SVK N QVLINCRNN KLL RVKAFDRHCNM+LENVKEMWTE P+ GKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+K S+PVNKDRF+SKMFLRGDSVI++L+NP
Sbjct: 80 QKASRPVNKDRFVSKMFLRGDSVIMVLRNP 109
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 94/105 (89%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE +E+EE F T PLS+LT SVK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENV
Sbjct: 13 TPEELSAREQEE-FNTEPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKKSKPVNKDR+ISKMFLRGDSVIL+L+NPLA
Sbjct: 72 KEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNPLA 116
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 94/103 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + E++ F TGPLS+LT++VK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENVKE
Sbjct: 14 EEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
MWTE PR GKGKKKSKPVNKDRFISK+FLRGDSVIL+L+NPLA
Sbjct: 74 MWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNPLA 116
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT+SV++NTQVLINCRNN+KL+GRVKAFDRHCNMVLENVKEMW E P+ KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
K +PVN+DRFISKMFLRGDSVI++LKNPL
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNPL 114
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 80/90 (88%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
+ TGPLS+LT SVK N QVLINCRNN KLL RVKAFDRHCNM+LENVKEMWTE P+ GKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K S+PVNKDRF+SKMFLRGDSVI++L+NP
Sbjct: 80 SKGSRPVNKDRFVSKMFLRGDSVIMVLRNP 109
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT+SV++NTQVLINCRNN+KL+GRVKAFDRHCNMVLENVKEMW E P+ KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
K +PVN+DRFISKMFLRGDSVI++LKNPL
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNPL 114
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/103 (80%), Positives = 94/103 (91%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + E++ F TGPLS+LT++VK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENVKE
Sbjct: 15 EEELYELEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 74
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
MWTE PR GKGKKKSKPVNKDR+ISK+FLRGDSVIL+L+NPLA
Sbjct: 75 MWTEVPRPGKGKKKSKPVNKDRYISKLFLRGDSVILVLRNPLA 117
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 88
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKKSKPVNKDR+ISKMFLRGDSVIL+L+NPLA
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVILVLRNPLA 120
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 92/98 (93%)
Query: 8 KQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
+++ EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT
Sbjct: 1 QEKTEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 60
Query: 68 EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
E P+ GKGKKK+KPVNKDRFISKMFLRG+SVI++L+NP
Sbjct: 61 EVPKTGKGKKKAKPVNKDRFISKMFLRGESVIIVLRNP 98
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLE+VKEMWTE P+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDR+ISKMFLRGDSVIL+L+NPLA
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSVILVLRNPLA 114
>gi|339252990|ref|XP_003371718.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
gi|316967993|gb|EFV52337.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
Length = 118
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 83/96 (86%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q+E E F GPLS+LT +V+ N+QVLI+CR+N+KL+ RVKAFDRHCNM+LENVKEMWTE
Sbjct: 13 QKETEDFEVGPLSVLTHAVRTNSQVLIDCRHNRKLIARVKAFDRHCNMILENVKEMWTEI 72
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
PR GKG+K+ VNKDRFISKMFLRGD VIL++KNP
Sbjct: 73 PRVGKGQKRGNAVNKDRFISKMFLRGDIVILVMKNP 108
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGD+VI+I++NPLA
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIMIVRNPLA 114
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 81/96 (84%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E+E F GPLS+LT +V+ N QV INCRNN+KLL RVKAFDRH NM+LE+V+E WTE
Sbjct: 17 QHEKEEFEKGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTEG 76
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
RAGKGK KSKPVNKDRFISK+FLRGDSVI+IL NP
Sbjct: 77 TRAGKGKTKSKPVNKDRFISKLFLRGDSVIIILPNP 112
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLL RVKAFDRHCNMVLENVKEMWTE P+ GKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKKSKPVNKDR+ISKMFLRGDSVIL+L+NP+A
Sbjct: 85 KKKSKPVNKDRYISKMFLRGDSVILVLRNPMA 116
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 2 ATREEPKQQE----EEESFATGPLSILTDSV---KHNTQVLINCRNNKKLLGRVKAFDRH 54
AT +P E EE+ F TGPLS+LT S QVLINCRNN+KLLGRVKAFDRH
Sbjct: 4 ATAAQPSVDELEKKEEDLFRTGPLSVLTMSRCLRVACVQVLINCRNNRKLLGRVKAFDRH 63
Query: 55 CNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
CNMVLENVKE WTE P+ GKG K SKPVNKDRFISKMFLRGDSVIL+L+NP
Sbjct: 64 CNMVLENVKEFWTEIPKRGKGAKASKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 85/97 (87%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ E + F GPLS+L+ SVK + QVLI+CRNN+KLLGRVKAFDRHCNMVLENVKE+WTE
Sbjct: 4 QKNEGQDFQAGPLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTE 63
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKG KK++ ++KDRF+SKMF+RGDSVIL+L+NP
Sbjct: 64 IPKTGKGCKKARTISKDRFLSKMFIRGDSVILVLRNP 100
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F+TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GKG
Sbjct: 13 FSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 72
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KKK+KPVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 73 KKKAKPVNKDRFISKMFLRGDSVIIVLRNP 102
>gi|328768108|gb|EGF78155.1| hypothetical protein BATDEDRAFT_91018 [Batrachochytrium
dendrobatidis JAM81]
Length = 109
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 79/91 (86%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q EE F TGPLSILT +VK+++QVL+ CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 18 QALEEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVI 99
P+ GKG KK+KPVNKDRFISKMFLRGDS I
Sbjct: 78 TPQTGKGIKKAKPVNKDRFISKMFLRGDSGI 108
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 88/92 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCN+VLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDRFISKMFLRGD+VI++++NPLA
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIIVVRNPLA 114
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 4/105 (3%)
Query: 7 PKQQEEE----ESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
P QEE+ + F TGPLSIL +SVK+NTQ+LIN RNNKKLL RV+AFDRHCNMVLENV
Sbjct: 5 PMDQEEDRDDLKEFETGPLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMVLENV 64
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKK+KPVNKDRFISKMFLRGDSVIL+LKNPL
Sbjct: 65 KEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVILVLKNPLG 109
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
Length = 103
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 83/94 (88%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E++ F TGPLS+LT SVK N+QVLINCRNN+KLLG++KAFDRHCNMVLENVKE W E +
Sbjct: 9 EDQEFDTGPLSVLTQSVKTNSQVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEVSK 68
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
GKG K++ P++K+RFISKMFLRGDSVIL+L+NP
Sbjct: 69 TGKGVKRTTPIHKERFISKMFLRGDSVILVLRNP 102
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 94/98 (95%)
Query: 8 KQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
+++ EEE F+TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT
Sbjct: 1 QEKTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 60
Query: 68 EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
E P+AGKGKKK+KPVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 61 EVPKAGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNP 98
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/92 (84%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKK LGRVKAFDRHCNMVLE+VKEMWTE P+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+KPVNKDR+ISKMFLRGDS+IL+L+NPLA
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSIILVLRNPLA 114
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 32 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 91
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 92 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 123
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/99 (75%), Positives = 89/99 (89%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E++ F +GP+S+LT SVK NTQVLI CRNNKKLL RVKAFDRHCNMVLE VKEMWTE P+
Sbjct: 25 EQQEFESGPMSVLTQSVKSNTQVLIFCRNNKKLLARVKAFDRHCNMVLEQVKEMWTETPK 84
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
AGKG+KK KP+NKDRFISKMFLRGD+VIL+L+NP+A ++
Sbjct: 85 AGKGQKKKKPINKDRFISKMFLRGDTVILVLRNPMAAEE 123
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 28 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 87
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 88 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 119
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 84 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 115
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 114
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE +E+EE F GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 12 TAEELAAKEDEE-FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKK+K V KDRFISKMFLRGDSVIL++KNPLA
Sbjct: 71 KEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 85 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 116
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE +E+EE F GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 12 TAEELAAKEDEE-FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKK+K V KDRFISKMFLRGDSVIL++KNPLA
Sbjct: 71 KEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EE +E+EE F GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 12 TAEELAAKEDEE-FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P+ GKGKKK+K V KDRFISKMFLRGDSVIL++KNPLA
Sbjct: 71 KEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 92/101 (91%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E Q+ EEE F TGPLS+LT SVK NTQVLINCRNNKKLLGRVKAF RHCNMVLENVKEM
Sbjct: 14 EELQKREEEGFNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEM 73
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
WTE P++GKGKKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 74 WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 27 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 86
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 87 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 118
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 90/114 (78%), Gaps = 9/114 (7%)
Query: 1 MATREEPKQQ--------EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFD 52
M+T +PK + +EE F TGPLS+L SVK+N Q+LI+CRNN KLL RVKAFD
Sbjct: 1 MSTVNKPKSEMTEEELRQQEELEFNTGPLSVLQQSVKNNNQILISCRNNHKLLARVKAFD 60
Query: 53 RHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
RHCNMVLENVKEMWTE PR GKG K+KPVNKDRF+SKMFLRGD+V+L+L+N +
Sbjct: 61 RHCNMVLENVKEMWTETPRTGKG-SKAKPVNKDRFVSKMFLRGDTVVLVLRNTV 113
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PRAGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NP A
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQA 114
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 88
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 89 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 120
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 92/101 (91%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E Q+ EE F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM
Sbjct: 14 EELQKRAEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
WTE P++GKGKKKSKPVNKDR+ISKMFLRGD VI++L+NPL
Sbjct: 74 WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDLVIVVLRNPL 114
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
QQ E F TGPLS+L +V+++ QVLI+CRNN+KLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 QQLEAYEFDTGPLSVLQQAVRNHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
PR KG KK KPVNKDRFISKMFLRGDSVIL+L+N +
Sbjct: 78 TPRNSKG-KKGKPVNKDRFISKMFLRGDSVILVLRNTV 114
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGR KAFDRHCNM LENVKEMWTE P++GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKK KPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 75 KKKFKPVNKDRYISKMFLRGDSVIVVLQNPL 105
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 86/92 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NP A
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQA 114
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 87/98 (88%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
QE+EE F GPLS+L SVK+N+QVLIN RNN KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 QEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEV 85
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
P++GKGKK +KPVNKDRF+SKMFLRGDSVI++L+NP A
Sbjct: 86 PKSGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNPHA 123
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 86/92 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK KPVNKDRFISKMFLRGDSVIL+L+NP A
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQA 114
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 89/105 (84%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
+R + E++ + GPLSIL DSV +NTQVLIN RNNKKLLGRV+AFDRHCNMVLENV
Sbjct: 2 SRMNDETMEDKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENV 61
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KE+WTE P+ KGKKK+KP+NKDRFISKMFLRGDSVIL+LKNPL
Sbjct: 62 KEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLG 106
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T E + QE EE F GPLSIL SVK+N+QVLIN RNN KLL RVKAFDRHCNMVLENV
Sbjct: 6 TDEFKRVQENEEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENV 65
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KEMWTE P++GKGKK KPVNKDRF+SK+FLRGDSV+L+L+NP A
Sbjct: 66 KEMWTEVPKSGKGKKSGKPVNKDRFVSKLFLRGDSVVLVLRNPHA 110
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 85/97 (87%)
Query: 11 EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
E+ + GPLSIL DSV +NTQVLIN RNNKKLLGRV+AFDRHCNMVLENVKE+WTE P
Sbjct: 14 EDINDYEKGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVP 73
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
+ KGKKK+KP+NKDRFISKMFLRGDSVIL+LKNPL
Sbjct: 74 KTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLG 110
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 84/90 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GKG
Sbjct: 20 FHTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKG 79
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KK+KPVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 80 VKKAKPVNKDRFISKMFLRGDSVIIVLRNP 109
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 81
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 76/79 (96%)
Query: 27 SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
SV++NTQVLINCRNNKKLLGRV AFDRHCNMVLENV+EMWTE P+ GKGKKK++PVNKDR
Sbjct: 2 SVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 61
Query: 87 FISKMFLRGDSVILILKNP 105
FISKMFLRGDSVI++L+NP
Sbjct: 62 FISKMFLRGDSVIIVLRNP 80
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 86/105 (81%), Gaps = 5/105 (4%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA +P EE+++F GPLS+L VK N+QVLINCRNN+K+L RVKAFDRH NMVLE
Sbjct: 1 MADEAKP---EEKDNFDVGPLSVLQKCVKDNSQVLINCRNNRKILARVKAFDRHSNMVLE 57
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
NV+EMWTE P GKKK+KPVNKDRFI+K+FLRGDSVIL+L+NP
Sbjct: 58 NVREMWTEVPHG--GKKKAKPVNKDRFITKLFLRGDSVILVLRNP 100
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F +GPLSIL +V+ +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 15 EEHEFTSGPLSILQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPK 74
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 75 TS-GGKKGRPVNKDRFISKMFLRGDSVILVL 104
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 91/103 (88%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+E Q +E+E F GPLSILT SVK+N QV+INCRNN+KLLGRVKAFDRHCNMVLENVKE
Sbjct: 13 QEELQAKEQEEFNVGPLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKE 72
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
MWTE P+ GKGKKK+KPV KDRFISKMFLRGDSVIL+LKNPL
Sbjct: 73 MWTELPKTGKGKKKAKPVAKDRFISKMFLRGDSVILVLKNPLT 115
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLASG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 84/91 (92%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGR KAFDRHCNM LENVKEMWTE P++GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKK KPVNKDR+ISK FLRGDSVI++L+NPL
Sbjct: 75 KKKFKPVNKDRYISKKFLRGDSVIVVLQNPL 105
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ F +GPLSIL +V+ ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 27 EQHEFTSGPLSILQTAVRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 87 LA-GGKKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 84/90 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNN+KLL RVKAFDRH NMVLENVKEMWTE P+ GKG
Sbjct: 23 FNTGPLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KKK++PVNKDRFI+KMF+RGDSVIL+L+NP
Sbjct: 83 KKKARPVNKDRFIAKMFIRGDSVILVLRNP 112
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/103 (80%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T+EE +E+EE F GPLS+LT SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 12 TQEELAAKEQEE-FNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KEMWTE P+ GKGKKK+KPV KDRFI+KMFLRGDSVI+ILKNP
Sbjct: 71 KEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 113
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 86/92 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F+ GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+ GKG
Sbjct: 24 FSVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KKK+K V KDRFISKMFLRGDSVIL++KNPLA
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/103 (80%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T+EE +E+EE F GPLS+LT SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 2 TQEELAAKEQEE-FNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KEMWTE P+ GKGKKK+KPV KDRFI+KMFLRGDSVI+ILKNP
Sbjct: 61 KEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 103
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 46 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 105
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 106 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 136
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 30 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 89
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 90 KKKSKPVNKDRYISKMFLRGDSVIIVLRNPL 120
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F++GPLSIL +V+ +TQVLI+ R+N+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIIVLRNPL 114
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F++GPLSIL +V+ +TQVLI+ R+N+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 119
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T+EE +E+EE F GPLS+LT SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 12 TQEELAAKEQEE-FNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KEMWTE P+ GKGKKK+KPV KDRFI+KMFLRGDSVI++LKNP
Sbjct: 71 KEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIVLKNP 113
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+E K +E++F GPLS+LT +VK N+QVL+NCRNN+KLLGRVKAFDRH NMVLENV E
Sbjct: 3 DEKKHIPQEDTFHEGPLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ KG KK+ PVN++R+ISKMFLRGDSVI++++NP
Sbjct: 63 MWTETPKPHKG-KKAHPVNRERYISKMFLRGDSVIIVIRNP 102
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 55 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 114
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 115 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 145
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F +GPLS+L +V+ +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFTSGPLSLLQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P+ G K +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PKLANG-KPGRPVNKDRFISKMFLRGDSVILVL 116
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 83 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 113
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 83/89 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++ KG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKN 104
KKKSKPVNKDR+ISKMFL G SVI++L+N
Sbjct: 85 KKKSKPVNKDRYISKMFLCGGSVIVVLQN 113
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/95 (83%), Positives = 90/95 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL ++
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPLITRK 118
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E F +GPLS+L +V+++TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 28 ETHEFTSGPLSLLQTAVRNHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 87
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G K+ +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 88 LTDG-KRGRPVNKDRFISKMFLRGDSVILVL 117
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE FA GPLSIL +V+ + QVLI+CRNN+KLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 19 QLEEYEFANGPLSILQTAVRTHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTET 78
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR +G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 79 PRNAQG-KKGRPVNKDRFISKMFLRGDSVILVL 110
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Gorilla
gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Gorilla
gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 104
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 42 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 101
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 102 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 132
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEHEFSAGPLSILQTAVRSHAQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 85/91 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+L+ SVK+NTQVLINCRN KKLLGRVKAFDRHCNMVLENVKEMWTE P++ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISK+FLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNPL 114
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E F +GPLS+L +V+ +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 31 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPR 90
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 91 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 85/91 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+L+ SVK+NTQVLINCRN KKLLGRVKAFDRHCNMVLENVKEMWTE P++ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISK+FLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNPL 114
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 44 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 103
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 104 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 134
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 119
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E F +GPLS+L +V+ +TQVLI+CRNN+KLLGRVKAFDRHCNMVLENVKEMW+E PR
Sbjct: 30 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPR 89
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK + VNKDRFISKMFLRGDSVIL+L
Sbjct: 90 TSDG-KKGRVVNKDRFISKMFLRGDSVILVL 119
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR++SKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNPL 114
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 QLEEHEFSAGPLSILQTAVRSHIQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR++SKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNPL 114
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ F +GPLS+L +V+ +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 30 EQHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPR 89
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK + VNKDRFISKMFLRGDSVIL+L
Sbjct: 90 LADG-KKGRAVNKDRFISKMFLRGDSVILVL 119
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 14 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 104
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 62 QLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 121
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 122 PRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 153
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F +GPLSIL +VK +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMW E PR
Sbjct: 30 EEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPR 89
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 90 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 119
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 80/94 (85%), Gaps = 3/94 (3%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAG 73
+ F TGPLS+LT + + N+QVLINCRNN+K+LGRVKAFDRH NMVLENV+E+WTE P+ G
Sbjct: 18 DKFETGPLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGG 77
Query: 74 KGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
K KPVNKDRF+SKMFLRGDSVI++L+NP A
Sbjct: 78 SNK---KPVNKDRFVSKMFLRGDSVIMVLRNPKA 108
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVN+DR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNRDRYISKMFLRGDSVIVVLRNPL 114
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F +GPLS+L +V+ + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QIEEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G K +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 85 PRL-SGGGKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 148 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 207
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISKMFLRGDSVI++L+NPL
Sbjct: 208 KKKSKPVNKDHYISKMFLRGDSVIVVLRNPL 238
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L SV++++QVLI+ RNNKKLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 21 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKGK KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 81 -GKGK---KPVNKDRFISKMFLRGDSVILVLRN 109
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNK+LLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDS+I++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSIIVVLRNPL 114
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F T PLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTSPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E F +GPLS+L +V+++ QVLI+CRNN+K+L RVKAFDRHCNMVLENVKEMWTE PR
Sbjct: 31 ETHEFTSGPLSLLQTAVRNHAQVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPR 90
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 91 LTDG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGR KAFDRHCNMVLEN+KEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 4/100 (4%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE +Q EE + GPLS+L SVK+NTQ+L++ RNN+KLL RVKAFDRH NMVLENVKE
Sbjct: 14 EEQIRQLEEFELSQGPLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
MWTE P+ GKGK +P+NKDRFISKMFLRGDSVIL+L+N
Sbjct: 74 MWTETPK-GKGK---QPINKDRFISKMFLRGDSVILVLRN 109
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L SV++++QVLI+ RNNKKLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 75 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 134
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKGK KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 135 -GKGK---KPVNKDRFISKMFLRGDSVILVLRN 163
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAF+RHCNMVLENVKE WTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLR DSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRRDSVIVVLRNPL 114
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+N L
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNLL 114
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 84/90 (93%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGP+S+LT SV++NTQVLINCRNN+KLL R+KAFDRHCNMVLENV+EMWTE P+ GKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KKK+K V++D++ISKMFLRGDSVIL++KNP
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVKNP 114
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 83/91 (91%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++ KG
Sbjct: 45 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 104
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKP+NK +ISKMFL GDSVI++L+N L
Sbjct: 105 KKKSKPINKGHYISKMFLSGDSVIVVLRNLL 135
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 87/91 (95%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVL+NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR++SKMF RGDSVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYVSKMFQRGDSVIVVLRNPL 114
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 83/91 (91%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++ KG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 73
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKP+NK +ISKMFL GDSVI++L+N L
Sbjct: 74 KKKSKPINKGHYISKMFLSGDSVIVVLRNLL 104
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 88/91 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT S+K+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE+WTE P++GKG
Sbjct: 24 FNTGPLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRG+SVI++L+NPL
Sbjct: 84 KKKSKPVNKDRYISKMFLRGNSVIVVLRNPL 114
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLS+L +VK++ QVLINCRNNKKLL RVKAFDRH NMVLENVKEMWTE R
Sbjct: 21 EEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKR 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
G KK K +NKDRFISKMFLRGD V+L+++ P A
Sbjct: 81 TASG-KKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 86/91 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FHTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLR DSV+L+L+N L
Sbjct: 84 KKKSKPVNKDRYISKMFLRQDSVVLVLRNSL 114
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens]
Length = 104
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 85/100 (85%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E + E FATGPLS+L S+K N+QVLIN RNN KLL RVKAFDRHCNMVLENVKE+
Sbjct: 2 ESGEPSVENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEV 61
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
WTE P+ GKGKKKSKPVNK+R+ISKMFLRGDSVIL+L+NP
Sbjct: 62 WTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNP 101
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 77/91 (84%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
+GP S+L +VK NTQVL+N RNN KLLGRVKA+DRH N++LE+VKEMWTE+ + GKG+K
Sbjct: 12 SGPFSVLFKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGKGRK 71
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKNPLAL 108
+ +NKDR++SKMFLRGDSVIL++ NP AL
Sbjct: 72 RGTSINKDRYVSKMFLRGDSVILVVSNPAAL 102
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F++GPLS+L +VK++ QVLINCRNNKKLL RVKAFDRH NMVLENVKEMWTE +
Sbjct: 21 EEYEFSSGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G KK KP+N+DRFISKMFLRGD V+L+++ P
Sbjct: 81 TSSG-KKGKPINRDRFISKMFLRGDGVVLVVRIP 113
>gi|346975454|gb|EGY18906.1| small nuclear ribonucleoprotein Sm D2 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 78/98 (79%), Gaps = 6/98 (6%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV-----KE 64
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENV KE
Sbjct: 24 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVVRTRLKE 83
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
MWTE PR G KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 MWTETPRNADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 83/90 (92%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGP+S+LT SV++NTQVLINCRNN+KLL R+KAFDRHCNMVLENV+EMWTE P+ GKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
KKK+K V++D++ISKMFLRGDSVIL++ NP
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVMNP 114
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L SV+++TQ+LI+ RNN+KLL RVKAFDRH NMVLENVKEMWTE P+
Sbjct: 21 EEYEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVPK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKGK KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 81 -GKGK---KPVNKDRFISKMFLRGDSVILVLRN 109
>gi|355763191|gb|EHH62129.1| hypothetical protein EGM_20337, partial [Macaca fascicularis]
Length = 117
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 86/91 (94%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISKMFLR DSVI++L+NPL
Sbjct: 83 KKKSKPVNKDHYISKMFLRRDSVIVVLRNPL 113
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 80/96 (83%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 78 IP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 109
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E Q+ EEE F TGPLS+LT S+K+NTQVLI+CRNNKKLLG VKAFDRHCNMVLENVKEM
Sbjct: 14 EELQKREEEKFNTGPLSVLTQSIKNNTQVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEM 73
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
WTE KKSKPVNKD +ISKMFL G+SVI++L+NPL
Sbjct: 74 WTE-VPKSGKGKKSKPVNKDCYISKMFLHGESVIMVLRNPL 113
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLSIL +V+ ++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWTE PR
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK KPVNKDRFISKMFLRGDSVIL+L
Sbjct: 88 LANG-KKGKPVNKDRFISKMFLRGDSVILVL 117
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLSIL +V+ ++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWTE PR
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK KPVNKDRFISKMFLRGDSVIL+L
Sbjct: 88 LANG-KKGKPVNKDRFISKMFLRGDSVILVL 117
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE TGPLSIL +V+ TQVLI+CRNN+K+L RVKAFDRHCNMVLEN KEMWTE
Sbjct: 24 QVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G K VNKDRFISK+FLRGDSVIL+L
Sbjct: 84 PRLANGSYGRK-VNKDRFISKLFLRGDSVILVL 115
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLSIL +V+ ++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWTE PR
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK KPVNKDRFISKMFLRGDSVIL+L
Sbjct: 88 LANG-KKGKPVNKDRFISKMFLRGDSVILVL 117
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLSIL +V+ ++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWTE PR
Sbjct: 17 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 76
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G KK KPVNKDRFISKMFLRGDSVIL+L
Sbjct: 77 LANG-KKGKPVNKDRFISKMFLRGDSVILVL 106
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 77/87 (88%), Gaps = 1/87 (1%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS+L SVK N+QVLINCRNN+K+LGRVKAFDRHCN+VL +V+EMWTE + G GKKK
Sbjct: 18 GPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSKGG-GKKK 76
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
+ VNKDRFISK+FLRGD+VILIL+NP
Sbjct: 77 VRTVNKDRFISKLFLRGDAVILILRNP 103
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE TGPLSIL +V+ TQVLI+CRNN+K+L RVKAFDRHCNMVLEN KEMWTE
Sbjct: 24 QVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
PR G K VNKDRFISK+FLRGDSVIL+L
Sbjct: 84 PRLSNGSMGRK-VNKDRFISKLFLRGDSVILVL 115
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 80/96 (83%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 78 IP---KGKNK-KPVNKDRFISKMFLRGDSVILVLRN 109
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L SV+++TQ+LI+ RNN+KLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 32 EEHEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP- 90
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
+GK K KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 91 SGKNK---KPVNKDRFISKMFLRGDSVILVLRN 120
>gi|242762206|ref|XP_002340329.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723525|gb|EED22942.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 114
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
GKG + VNKDRFISKMFLRGDSVIL+L
Sbjct: 86 GGKG----RGVNKDRFISKMFLRGDSVILVL 112
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 76/100 (76%)
Query: 11 EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
E +GP SIL +V+ NTQVLIN RNN KLL RVKA+DRH N++LE+VKEMWTE
Sbjct: 13 EHATDLKSGPFSILYQAVRGNTQVLINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTEVS 72
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
+ GKG+ + VNKDR++SKMFLRGDSVIL++ NP AL Q
Sbjct: 73 KGGKGRTRGTAVNKDRYVSKMFLRGDSVILVVSNPAALAQ 112
>gi|119478615|ref|XP_001259398.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
gi|121713894|ref|XP_001274558.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119402711|gb|EAW13132.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119407552|gb|EAW17501.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
Length = 115
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
GKG+ VNKDRFISKMFLRGDSVIL+L
Sbjct: 87 GGKGRG----VNKDRFISKMFLRGDSVILVL 113
>gi|70997219|ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gi|66850998|gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
gi|159126913|gb|EDP52029.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus A1163]
Length = 122
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 34 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 93
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
GKG+ VNKDRFISKMFLRGDSVIL+L
Sbjct: 94 GGKGRG----VNKDRFISKMFLRGDSVILVL 120
>gi|212529806|ref|XP_002145060.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074458|gb|EEA28545.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
GKG + VNKDRFISKMFLRGDSVIL+L
Sbjct: 86 GGKG----RGVNKDRFISKMFLRGDSVILVL 112
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 73/91 (80%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 35 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 94
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
KGK VNKDRFISKMFLRGDSVILIL
Sbjct: 95 GAKGKG----VNKDRFISKMFLRGDSVILIL 121
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 80/96 (83%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSV+L+L+N
Sbjct: 78 VP---KGKNK-KPVNKDRFISKMFLRGDSVVLVLRN 109
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 72/79 (91%)
Query: 27 SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
SVK+NTQVLIN RNN KLL R+KAFDRHCNMVL +VKEMWTE P+ GKG+KK+K VNKDR
Sbjct: 3 SVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDR 62
Query: 87 FISKMFLRGDSVILILKNP 105
++SKMFLRGDSV+L+L+NP
Sbjct: 63 YVSKMFLRGDSVVLVLRNP 81
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTELP- 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
KGK K KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 80 --KGKNK-KPVNKDRFISKMFLRGDSVILVLRN 109
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EEFEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMP- 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 80 --KGKNK-KPVNKDRFISKMFLRGDSVILILRN 109
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ + GPLS+L SV+++TQ+LI RNNKKLL RVKAFDRH NMVLENVKEMWTE P+
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKGK KPVNKDRFISKMFLRGDSV+L+L+N
Sbjct: 81 -GKGK---KPVNKDRFISKMFLRGDSVVLVLRN 109
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E K+ +EE+ GP +LT +V HNTQVLI RNN+KLLGRVKAFDRH NM+LENV E
Sbjct: 3 ETQKRTAQEETLEKGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTE 62
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE P+ KG KK+ NK+RFI KMFLRGDSVI IL+NP
Sbjct: 63 MWTEIPKGNKG-KKAHATNKERFIPKMFLRGDSVIYILRNP 102
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ + GPLS+L SV+++TQ+LI RNNKKLL RVKAFDRH NMVLENVKEMWTE P+
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKGK KPVNKDRFISKMFLRGDSV+L+L+N
Sbjct: 81 -GKGK---KPVNKDRFISKMFLRGDSVVLVLRN 109
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 79/96 (82%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE + GPLS+L +V+++ QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 78 VP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 109
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 88
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
KGK VNKDRFISKMFLRGDSVIL+L
Sbjct: 89 GAKGKG----VNKDRFISKMFLRGDSVILVL 115
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 32 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKM 91
VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE P+ GKGKKK+ PVNKDRFISKM
Sbjct: 22 VAVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 81
Query: 92 FLRGDSVILILKNP 105
FLRGDSVI++L+NP
Sbjct: 82 FLRGDSVIIVLRNP 95
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 79/96 (82%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE + GPLS+L +V+++ QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 78 VP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 109
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G GK VNKDRFISKMFLRGDSVIL+L
Sbjct: 87 GGNGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|134081955|emb|CAK97221.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 88
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
G G K VNKDRFISKMFLRGDSVIL+L
Sbjct: 89 GGNG----KGVNKDRFISKMFLRGDSVILVL 115
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
KGK VNKDRFISKMFLRGDSVIL+L
Sbjct: 87 GSKGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 80/100 (80%), Gaps = 4/100 (4%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + EE ATGPLS+L SVK++TQ+LI RNN+KLL RVKAFDRH NMVL NVKE
Sbjct: 14 EEKIRALEEHEIATGPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVNVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
MWTE P KGK K KPVNKDRFISKMFLRGDSVIL+L++
Sbjct: 74 MWTELP---KGKNK-KPVNKDRFISKMFLRGDSVILVLRH 109
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE K+ EE+F+ GP S+L +VK NTQVLI RNN+K+L +V+AFDRH NMVLENV E
Sbjct: 2 EEEKKLTPEETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLE 61
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
MWTE PR G KKSKP+ K+R+I+K+FLRGDSVI +LKNP
Sbjct: 62 MWTEVPRGSHG-KKSKPMKKERYITKLFLRGDSVIFVLKNP 101
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 32 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKM 91
QVLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTE P+ GKGKKK+ PVNKDRFISKM
Sbjct: 30 NQVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 89
Query: 92 FLRGDSVILILKNP 105
FLRGDSVI++LKNP
Sbjct: 90 FLRGDSVIIVLKNP 103
>gi|441600622|ref|XP_004087625.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Nomascus leucogenys]
gi|441600625|ref|XP_004087626.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Nomascus leucogenys]
Length = 118
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 83/91 (91%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCR++KKLLG VKAF+RHCNMVLEN+KEMWTE P++ KG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRSSKKLLGHVKAFERHCNMVLENMKEMWTEVPKSSKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISKMFL GD VI++L+NPL
Sbjct: 84 KKKSKPVNKDCYISKMFLHGDLVIVVLRNPL 114
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 79/96 (82%), Gaps = 4/96 (4%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q EE+ + GPLS+L +V+++ QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMW E
Sbjct: 19 RQLEEQEISQGPLSVLLQAVRNHHQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWVE 78
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 79 VP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 110
>gi|349803317|gb|AEQ17131.1| putative small nuclear ribonucleoprotein sm d2 [Pipa carvalhoi]
Length = 116
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 86/91 (94%), Gaps = 2/91 (2%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLL VKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLL--VKAFDRHCNMVLENVKEMWTEVPKSGKG 81
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 82 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 112
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EEP+++ EEE T PLS+LT SVK+NTQVLIN R NK LLGRVKAFD H NMVLENV
Sbjct: 2 TAEEPQKRGEEE-LNTSPLSVLTPSVKNNTQVLINYRKNKNLLGRVKAFDGHYNMVLENV 60
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR-GDSVILILKNPL 106
+E+ TE P++ KG+KKSKPV+KDR+IS MF R GDSVI+ L++PL
Sbjct: 61 EELGTEVPKSDKGRKKSKPVHKDRYISAMFPRAGDSVIVGLRHPL 105
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMP- 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
KGK K K VNKDRFISKMFLRGDSVIL+L+N
Sbjct: 80 --KGKNK-KAVNKDRFISKMFLRGDSVILVLRN 109
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 73/91 (80%), Gaps = 5/91 (5%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E +TGPLSIL + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 13 EAHELSTGPLSILMTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 69
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K SK VNKDRFISKMFLRGDSVIL+L
Sbjct: 70 --KTKGNSKGVNKDRFISKMFLRGDSVILVL 98
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 83/85 (97%)
Query: 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKP 81
S+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKGKKKSKP
Sbjct: 1 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 60
Query: 82 VNKDRFISKMFLRGDSVILILKNPL 106
VNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 61 VNKDRYISKMFLRGDSVIVVLRNPL 85
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E+ F+ GPLSIL +V+ +TQVLI+ R+N+KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 24 QLEQWEFSNGPLSILQTAVRTHTQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 PVT--NGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 80/87 (91%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS+L +SV+ TQ+LI+CRNN+KLL RVKAFDRHCNMVLENV+EMWTE P++GKG+KK
Sbjct: 30 GPLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKK 89
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
SKP+NK RF +K+FLRGDSVIL+L+NP
Sbjct: 90 SKPINKTRFTNKLFLRGDSVILVLRNP 116
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L +V+++ QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP- 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
KGK K KPVNKDRFISKMFLRGDSVIL+L++
Sbjct: 80 --KGKNK-KPVNKDRFISKMFLRGDSVILVLRH 109
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
+ E F+ GPLS+L D VK T VLIN RN+KKLLG+VKAFDRH NM+LENVKE+WTE P+
Sbjct: 29 KSEEFSQGPLSLLVDCVKDGTPVLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIPK 88
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+ KK++PVNKDRFI KMFLRGDSV+L+LK P
Sbjct: 89 S----KKARPVNKDRFIPKMFLRGDSVVLVLKAP 118
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS LT SVK+NTQVLINC NNKKLLGRVKAFDRHCNMVLENVKEMWTE
Sbjct: 24 FNTGPLSELTQSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTE-VPKSGK 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKSKPVNKDR+ISKMFLRGD VI++L+NPL
Sbjct: 83 GKKSKPVNKDRYISKMFLRGDLVIVVLQNPL 113
>gi|444705722|gb|ELW47114.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 118
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 83/91 (91%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINC NNKKLLGRVKAFDRHCNM LEN+KEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTPSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMALENMKEMWTEDPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNKD +ISKMFL GDSVI++L NPL
Sbjct: 84 KKKSKPVNKDGYISKMFLHGDSVIVVLWNPL 114
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q ++++ + GPLS+LT+ VK NTQ+L+NCRNN+K+LGRVKAFDRHCN++L + +E+WTE
Sbjct: 10 QTTKKDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTE 69
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
++GK K +K +NKDRFISK+F+RGDSVILILK+P
Sbjct: 70 SMKSGK-KGSAKYINKDRFISKLFVRGDSVILILKSP 105
>gi|148709180|gb|EDL41126.1| mCG49198 [Mus musculus]
Length = 118
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 84/91 (92%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRN KKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKKSKPVNK+ +ISKMFL GDS I++L+NPL
Sbjct: 84 KKKSKPVNKNCYISKMFLHGDSFIVVLRNPL 114
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/93 (66%), Positives = 74/93 (79%), Gaps = 2/93 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE A GPLS+L +V+ +TQVLI+ R+ +KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 500 QIEEWEMANGPLSLLQTAVRSHTQVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTET 559
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P KK +PVNKDRFISKMFLRGDSV+++L
Sbjct: 560 PVT--NGKKGRPVNKDRFISKMFLRGDSVVIVL 590
>gi|57900175|dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 431
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/72 (84%), Positives = 68/72 (94%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTE P+ GKGKKK+ PVNKDRFISKMFL
Sbjct: 359 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 418
Query: 94 RGDSVILILKNP 105
RGDSVI++LKNP
Sbjct: 419 RGDSVIIVLKNP 430
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE F+ GPLS+L +V+++TQVLI+CRNNKKLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 21 QKLEEYEFSHGPLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTE 80
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
+ G K K V KDRFISKMFLRGD+VIL++
Sbjct: 81 KTKTASG-KPGKTVTKDRFISKMFLRGDTVILVV 113
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
E++F+TGP S+L +VK NTQVLI RNN+K+L RV+AFDRH NMVLENV EMWTE PR
Sbjct: 10 EDNFSTGPFSLLFKAVKANTQVLIALRNNRKILARVRAFDRHMNMVLENVLEMWTEVPRG 69
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G +KSKP+ K+R+ SKMFLRGDSVI +L+NP
Sbjct: 70 SHG-QKSKPMRKERYHSKMFLRGDSVIFVLRNP 101
>gi|169614612|ref|XP_001800722.1| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
gi|160702782|gb|EAT81846.2| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
Length = 133
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 74/109 (67%), Gaps = 17/109 (15%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE TGPLSIL +V+ TQVLI+CRNN+K+L RVKAFDRHCNMVLEN KEMWTE
Sbjct: 24 QVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKM----------------FLRGDSVILIL 102
PR G+ K VNKDRFISK+ FLRGDSVIL+L
Sbjct: 84 PRLANGQYGRK-VNKDRFISKLYVSSAFKTYAMLTASSFLRGDSVILVL 131
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M E + +EE+ GPLS+LT +VK N Q+L+NCRNN+KLL R KAFDRH NMVLE
Sbjct: 9 MTPEEAQRHVPQEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLE 68
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
NV EMWTE P + KK+KPVNK+RFI K+FLRGDSVIL++KNP
Sbjct: 69 NVCEMWTEMP-KKQKGKKTKPVNKERFIHKLFLRGDSVILVIKNP 112
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 75/87 (86%), Gaps = 2/87 (2%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS+L ++K N+QVLINCRNN+KLLGRVKAFDRH N++LENVKE+WT+ R + + K
Sbjct: 12 GPLSVLVSAIKTNSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTD--RNSQKESK 69
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
+ P NKDRFISK+FLRGDS+IL+LKNP
Sbjct: 70 TPPSNKDRFISKLFLRGDSIILVLKNP 96
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 47 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 103
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRFISKMFLRGDSVIL+L
Sbjct: 104 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 133
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 74/93 (79%), Gaps = 2/93 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E + GPLS+L +V+ ++QVLI+ R+N+KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 24 QLEAYEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P KK +PVNKDRFISKMFLRGDSVIL+L
Sbjct: 84 P--VHNGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%), Gaps = 4/89 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPLS+L +V++ +QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P+
Sbjct: 20 EEYEISQGPLSVLQQAVRNQSQVLISLRNNKKLLARVKAFDRHANMVLENVKEMWTETPK 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVIL 100
GKGK K +NKDRFISK+FLRGDSVIL
Sbjct: 80 -GKGK---KTINKDRFISKLFLRGDSVIL 104
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 86/149 (57%), Gaps = 53/149 (35%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQV----------------------------------- 34
+ + E F+TG LS+L SV++NT++
Sbjct: 20 KNKSEEFSTGSLSVLMMSVRNNTELGSYESGCNSPNTPLIYGPKFLAWLVKSTRLTWVCL 79
Query: 35 ---------LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE---------HPRAGKGK 76
INCRNNKKLLGRV+ FDRHCNMVLENV+EMWTE P+ GKGK
Sbjct: 80 PARLLLVLCSINCRNNKKLLGRVRTFDRHCNMVLENVREMWTEVYNYTLFIWVPKTGKGK 139
Query: 77 KKSKPVNKDRFISKMFLRGDSVILILKNP 105
KK++PVNKDRFISKMFLRGDSVI++L+NP
Sbjct: 140 KKAQPVNKDRFISKMFLRGDSVIIVLRNP 168
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRFISKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 112
>gi|432118204|gb|ELK38063.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 118
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
TGP S+LT SVK+NTQVLINCRNNKKLLG VKAFDRHCNMVLENVKEMWT P++GK K+
Sbjct: 26 TGPFSMLTQSVKNNTQVLINCRNNKKLLGWVKAFDRHCNMVLENVKEMWTGVPKSGKSKE 85
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKNPL 106
KSK VNKD +ISKMFL D VI++++NPL
Sbjct: 86 KSKTVNKDFYISKMFLHRDLVIVVMRNPL 114
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 74/93 (79%), Gaps = 2/93 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E + GPLS+L +V+ ++QVLI+ R+N+KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 24 QLESWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P KK +PVNKDRFISKMFLRGDSVI++L
Sbjct: 84 P--VHNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|302695697|ref|XP_003037527.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
gi|300111224|gb|EFJ02625.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
Length = 127
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 80/112 (71%), Gaps = 20/112 (17%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE---- 64
+Q EE + GPLS+L +V+++TQVLI+ RN+KKLL RVKAFDRH NMVLENVKE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHTQVLISLRNDKKLLARVKAFDRHSNMVLENVKEARQF 77
Query: 65 ------------MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
MWTE P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 78 TFSLPLNAYTQQMWTEIP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 125
>gi|328765680|gb|EGF75829.1| hypothetical protein BATDEDRAFT_15195 [Batrachochytrium
dendrobatidis JAM81]
Length = 74
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 27 SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
+VK+++QVL+ CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+ GKG KK+KPVNKDR
Sbjct: 1 AVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDR 60
Query: 87 FISKMFLRGDSVI 99
FISKMFLRGDS I
Sbjct: 61 FISKMFLRGDSGI 73
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 78/95 (82%), Gaps = 1/95 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE F GP+S+L D+VK+ T V+++CRNN KL+ RVKAFDRHCN++LENVKE+WTE
Sbjct: 18 QKLEEFEFTYGPMSLLQDAVKNGTPVVVSCRNNHKLVARVKAFDRHCNLILENVKELWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
R KG+K + ++K+RF+SKMFLRGDSVI++LK
Sbjct: 78 SVRNNKGQKVN-SISKERFVSKMFLRGDSVIIVLK 111
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 75/93 (80%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE + GPL++L SVK++TQ+L+ RN KLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLENVKEMWTEIP- 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
KGK K KPVNKDRFISK+FLRGDSVI++L++
Sbjct: 80 --KGKNK-KPVNKDRFISKLFLRGDSVIMVLRS 109
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E + GPLS+L +V+ + QVLI+ R+N+KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 24 QLEAWEMSNGPLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
P KK +PVNKDRFISKMFLRGDSVI++L
Sbjct: 84 P--VHNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 77/90 (85%), Gaps = 3/90 (3%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS+L++ V+ NTQ+L+NCRNN+K+LGRVKAFDRHCN++L +V+E+WTE + +KK
Sbjct: 21 GPLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEAVKTNSSQKK 80
Query: 79 ---SKPVNKDRFISKMFLRGDSVILILKNP 105
++ +NKDRFISK+F+RGDSVILILK+P
Sbjct: 81 KSSNRFINKDRFISKLFVRGDSVILILKSP 110
>gi|322696181|gb|EFY87977.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium acridum CQMa
102]
Length = 120
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E + Q EE F +GPLSIL +VK +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKE
Sbjct: 35 EYTQNQLEEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 94
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKM 91
MWTE PR G KK +PVNKDRFISKM
Sbjct: 95 MWTETPRLADG-KKGRPVNKDRFISKM 120
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 79/115 (68%), Gaps = 23/115 (20%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE---- 64
+Q EE + GPLS+L +V+++ QVLI+ RNNKKLL RVKAFDRH NMVLENVKE
Sbjct: 18 RQLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEERPS 77
Query: 65 ---------------MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
MWTE P KGK K KPVNKDRFISKMFLRGDSVIL+L+N
Sbjct: 78 PFTTIQEPRLMVNSQMWTETP---KGKNK-KPVNKDRFISKMFLRGDSVILVLRN 128
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 99 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 155
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 156 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 185
>gi|346325342|gb|EGX94939.1| small nuclear ribonucleoprotein Sm D2 [Cordyceps militaris CM01]
Length = 145
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F+ GPLSIL +V+ + QVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 49 QLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTET 108
Query: 70 PRAGKGKKKSKPVNKDRFISKMFL 93
PR G KK +PVNKDRFISKM++
Sbjct: 109 PRLADG-KKGRPVNKDRFISKMYV 131
>gi|281209973|gb|EFA84141.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 667
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 80/99 (80%), Gaps = 8/99 (8%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E ++++E++ F TGPLSIL DSV NTQVLIN RNNKKLLG V+AFDRHCNMVLENVKEM
Sbjct: 5 EQEERDEQKEFETGPLSILMDSVNKNTQVLINVRNNKKLLGTVRAFDRHCNMVLENVKEM 64
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
WTE P+ GKGKKK+KPVNKDRFISK ILIL N
Sbjct: 65 WTEIPKTGKGKKKAKPVNKDRFISK--------ILILSN 95
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 15 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 72 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 101
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 4/104 (3%)
Query: 3 TREEPKQQE-EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61
+++P E + + GPLSIL + V+ N QVLINCRNN+K+L RVKAFDRHCNM+L N
Sbjct: 5 VKQDPTPMELDNKDNPAGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTN 64
Query: 62 VKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
V+EMWT GKG K K KDRF+S++FLRGDSVI++LKNP
Sbjct: 65 VREMWTVR---GKGTGKKKLETKDRFLSRLFLRGDSVIVVLKNP 105
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 76/91 (83%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
+GP ++L +VK NTQVL+N RNN KLLGRVKA+DRH N++LE+VKEMWTE + GKGKK
Sbjct: 17 SGPFNVLYKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGKGKK 76
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKNPLAL 108
+ VNKDR++SKMFLRGDSVIL++ NP AL
Sbjct: 77 RGTSVNKDRYVSKMFLRGDSVILVVSNPAAL 107
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE FA GP+S++ ++V +NT ++I+CRNN KL+G+V+AFDRHCN++LENVKE+WTE
Sbjct: 18 QKLEEFEFAHGPMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+ KG K +K ++++RFISK+FLRGDS+++ILK
Sbjct: 78 TSKNNKG-KATKSISRERFISKLFLRGDSIVIILK 111
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 3/87 (3%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLSIL + V+ N QVLINCRNN+K+L RVKAFDRHCNM+L +V+EMWT GKG K
Sbjct: 22 GPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTDVREMWTVR---GKGTGK 78
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
K KDRFI+++FLRGDSVI++LKNP
Sbjct: 79 KKLETKDRFITRLFLRGDSVIVVLKNP 105
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE FA GP+S+L +++ +NT V+I+CRNN K++ RVKAFDRHCNMVLENVKE+WTE
Sbjct: 18 QKLEEFEFAHGPMSLLQNALDNNTPVVISCRNNHKMVARVKAFDRHCNMVLENVKELWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+ GKGK + V+K+RF+SK+FLRGDSV++++K
Sbjct: 78 SVKNGKGKVVN-SVSKERFVSKLFLRGDSVVIVVK 111
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 80/89 (89%), Gaps = 1/89 (1%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
TGPLS+LT SVK++TQVLINCRNNK+LLGRVKAF RHCNMVLENVKEMWTE P++ K
Sbjct: 26 TGPLSVLTQSVKNSTQVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEVPKS-SKGK 84
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKNPL 106
KSKPV+KDR +SKMFLRGDSV ++L+NPL
Sbjct: 85 KSKPVSKDRRVSKMFLRGDSVTVVLRNPL 113
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 79/97 (81%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
++ EE FA GPLSIL +VK+ T VLIN RNN KLL VKAFDRHCNMVLENVKE+WTE
Sbjct: 357 EKSEEAEFAQGPLSILYRAVKNGTSVLINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTE 416
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P++GKGKKK+K + KDRFI K+FLRGDSV+++ NP
Sbjct: 417 VPKSGKGKKKAKAITKDRFIPKLFLRGDSVVVVCSNP 453
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 71/74 (95%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLINCRNNKKLL RVKAFDRHCNMVLENVKEMWTE PR GKGKKKSKPVNKDRFISK+FL
Sbjct: 6 VLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFL 65
Query: 94 RGDSVILILKNPLA 107
RGDSVIL+L+NPLA
Sbjct: 66 RGDSVILVLRNPLA 79
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 78/96 (81%), Gaps = 3/96 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE F GP+S+L ++V +NT ++I+CRNN KL+ +VKAFDRHCN+VLENVKE+WTE
Sbjct: 18 QKLEEFEFTHGPMSLLQNAVNNNTPIVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTE 77
Query: 69 HPRAGKGKK-KSKPVNKDRFISKMFLRGDSVILILK 103
+ KGKK KS P K+RF+SKMFLRGDSVI+I+K
Sbjct: 78 TVKNNKGKKIKSTP--KERFVSKMFLRGDSVIIIVK 111
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 8/104 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
TR+E KQ EE E F GP+S++TDS+ V+I+ RNN K++ RVKAFDRHCNMVLENV
Sbjct: 14 TRDELKQLEEFE-FKHGPMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRHCNMVLENV 72
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KE+WTE KK VN++RFISK+FLRGDSVI+I+K PL
Sbjct: 73 KELWTE-------KKGKSTVNRERFISKLFLRGDSVIVIVKAPL 109
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 76/94 (80%), Gaps = 3/94 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E++ +GPLS+L V+ N+QVLINCR+N+KLLGRVKAFDRH NM+L +V+EMWTE
Sbjct: 71 EDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTE-VS 129
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G GKKK +NKDR+IS++FLRGDSV+++L NP
Sbjct: 130 GGGGKKKY--MNKDRYISRLFLRGDSVVVVLSNP 161
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 69/91 (75%), Gaps = 4/91 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI CR+N++LL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWTE--- 83
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
K K VNKDRFISKMFLRGDSVIL+L
Sbjct: 84 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 113
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 3/87 (3%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS++ + V N+QVLINCRNN+K+L RVKAFDRHCNM+L + +EMWT G K
Sbjct: 19 GPLSLIAECVMDNSQVLINCRNNRKILARVKAFDRHCNMILVDAREMWTVKSSGG---GK 75
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
K VNKDRFISKMFLRGDSVI++L+NP
Sbjct: 76 QKFVNKDRFISKMFLRGDSVIVVLRNP 102
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+EE ++ GP +LT++V+ + QVLINCRNNKKL+ RVKAFDRH NMVLEN+KE+WTE
Sbjct: 2 EEETKALVEGPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEM 61
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLAL 108
R GK K+K R ISKMFLRGDSVI+I+KNP L
Sbjct: 62 KRDSDGKLKAKLCQ--RSISKMFLRGDSVIVIVKNPAEL 98
>gi|297598393|ref|NP_001045506.2| Os01g0967000 [Oryza sativa Japonica Group]
gi|255674111|dbj|BAF07420.2| Os01g0967000 [Oryza sativa Japonica Group]
Length = 226
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 60/64 (93%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTE P+ GKGKKK+ PVNKDRFISKMFL
Sbjct: 155 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 214
Query: 94 RGDS 97
RGDS
Sbjct: 215 RGDS 218
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/77 (89%), Positives = 74/77 (96%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 76 KKKSKPVNKDRFISKMF 92
KKKSKPVNKDR+ISKMF
Sbjct: 83 KKKSKPVNKDRYISKMF 99
>gi|212529808|ref|XP_002145061.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074459|gb|EEA28546.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 117
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 4/90 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE GPLS+L + + +TQVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
GKG+ VNKDRFISKM+ S+++I
Sbjct: 86 GGKGRG----VNKDRFISKMYTSPASLLII 111
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 8/105 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
+REE Q EE E F GP+S++ DSV V+I+ RNN K++ RVKAFDRHCNMVLENV
Sbjct: 14 SREELNQLEEFE-FKHGPMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENV 72
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
KE+WTE KK + +N++RFISK+FLRGDS+I+ILK P+A
Sbjct: 73 KELWTE-------KKGKQIINRERFISKLFLRGDSIIVILKAPVA 110
>gi|119570508|gb|EAW50123.1| hCG2040270 [Homo sapiens]
Length = 117
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TG LS+LT SVK+NTQVLINCR+N KLLG VKAF RHCNMVLENVKE WTE
Sbjct: 24 FNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTE-VPKSGK 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KKSKPVNKD +IS+MFL GD VI++L+NPL
Sbjct: 83 GKKSKPVNKDCYISRMFLHGDLVIVVLRNPL 113
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E QQ EE F GP+S++ S+ +NT V+++CRNN K++G+VKAFDRHCN++LE+VKE
Sbjct: 14 EAELQQLEEFEFTHGPMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+WTE R KG K +K+RFISK+FLRGDSVI++LK
Sbjct: 74 LWTETTRNSKG-AVIKTASKERFISKLFLRGDSVIIVLK 111
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ EE F GP+S+L ++V + + V+I+CRNN KL+ +VKAFDRHCN++LENVKE+WTE
Sbjct: 18 QKLEEFEFTHGPMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKELWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+ KG KK K +K+RF+SKMFLRGDSV+++LK
Sbjct: 78 SVKNNKG-KKIKSTSKERFVSKMFLRGDSVVIVLK 111
>gi|154310658|ref|XP_001554660.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 116
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F +GPLS+L +V+ + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 25 QIEEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 70 PRAGKGKKKSKPVNKDRFISKM 91
PR G K +PVNKDRFISK+
Sbjct: 85 PRLS-GGGKGRPVNKDRFISKI 105
>gi|12718491|emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
Length = 126
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F+ GPLSIL +V+ ++QVLI+ RN +K+L RVKAFDRH NMVLENVKEMWTE PR
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 72 AGKGKKKSKPVNKDRFISKMFL 93
G KK KPVNKDRFISKMF+
Sbjct: 88 LANG-KKGKPVNKDRFISKMFV 108
>gi|109089899|ref|XP_001087489.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
gi|355745907|gb|EHH50532.1| hypothetical protein EGM_01380 [Macaca fascicularis]
Length = 118
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+ T SVK+NTQVLINC NNKKLLG VKAFDRH NMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLENVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKN-PLA 107
KKKSKPVNKD +ISKMFL DSVI++L+N P+A
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRNLPIA 116
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 76/104 (73%), Gaps = 5/104 (4%)
Query: 3 TREEPKQQE-EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61
T++E E + +GPLSIL + V+ N QVLINCRNN+K+L RVKAFDRH NM+L +
Sbjct: 5 TKQESSSMEVDNRDSPSGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHFNMILTD 64
Query: 62 VKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
V+EMWT + K K ++ KDRFI+++FLRGDSVI++LKNP
Sbjct: 65 VREMWTVKSKGNKKKMET----KDRFITRLFLRGDSVIVVLKNP 104
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+S++ + K NT V+I+CRNN KL+G+++AFDRHCN+VLENVKE+WTE +
Sbjct: 21 EEFEFLHGPMSLINQAQKQNTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+ KS V+++RFISKMFLRGDSVI+ILK
Sbjct: 81 NEFNQTKS--VSRERFISKMFLRGDSVIIILK 110
>gi|355562622|gb|EHH19216.1| hypothetical protein EGK_19888 [Macaca mulatta]
Length = 118
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGPLS+ T SVK+NTQVLINC NNKKLLG VKAFDRH NMVLE+VKEMWTE P++GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLEDVKEMWTEVPKSGKG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKN-PLA 107
KKKSKPVNKD +ISKMFL DSVI++L+N P+A
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRNLPIA 116
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 8/104 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
++EE Q EE E GP+S++ ++V T V+I+ RNN K++ RVKAFDRHCNMVLENV
Sbjct: 14 SKEELDQLEEFE-LRHGPMSLINEAVISRTPVIISLRNNHKIIARVKAFDRHCNMVLENV 72
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KE+WTE KK +K NK+RFISK+FLRGDSVI+ILK P+
Sbjct: 73 KELWTE-------KKHNKTTNKERFISKLFLRGDSVIIILKAPI 109
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba invadens
IP1]
Length = 100
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+EE ++ GP +LT++V+ ++QV+INCRNNKKL+ RVKAFDRH NMVLENVKE WTE
Sbjct: 2 EEEVKALVDGPFQLLTEAVEKHSQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEM 61
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLAL 108
+ +GK K K +++ +SKMFLRGDSVI+++K P +L
Sbjct: 62 QKMPEGKPKPKTCHRN--VSKMFLRGDSVIIVVKAPESL 98
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 7/98 (7%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
QQ EE F GP+S++ D++ V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE
Sbjct: 18 QQLEEFEFKHGPMSLINDAMVSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
K+ K VN++RFISK+FLRGDS+I++L+ P+
Sbjct: 78 -------KQNKKTVNRERFISKLFLRGDSIIIVLRAPV 108
>gi|444721759|gb|ELW62473.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 135
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 68/78 (87%), Gaps = 2/78 (2%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F TGP S+L SVK+NTQVLI+C +NKK++G +KAFDRHC+MVLENVKEMWTE P++ KG
Sbjct: 24 FNTGPHSVLMQSVKNNTQVLIHC-HNKKVMGHMKAFDRHCDMVLENVKEMWTEVPKSRKG 82
Query: 76 KKKSKPVNKDRFISKMFL 93
KKSKPVNKD +ISKMFL
Sbjct: 83 -KKSKPVNKDHYISKMFL 99
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 7/91 (7%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F GPLS++ DSV V+I+ RNN K++ RVKAFDRHCNM+LENVKE+WTE
Sbjct: 26 FKNGPLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWTE------- 78
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KK + VNK+RFISK+FLRGDSVI+ILK P+
Sbjct: 79 KKGKRVVNKERFISKLFLRGDSVIVILKAPV 109
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+S++ + K NT V+I+CRNN KL+G+++AFDRHCN+VLENVKE+WTE +
Sbjct: 21 EEFEFLHGPMSLINQAQKENTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVK 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+ KS V+++RFISK+FLRGDSVI+ILK
Sbjct: 81 NEFNQTKS--VSRERFISKLFLRGDSVIIILK 110
>gi|403414237|emb|CCM00937.1| predicted protein [Fibroporia radiculosa]
Length = 114
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 73/97 (75%), Gaps = 9/97 (9%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRH----CNMVLENVKEMWT 67
EE + GPLS+L +V+++TQVLI+ RNNKKLL RVKAFDRH C V + +MWT
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSTGKCKRV-QTFVQMWT 79
Query: 68 EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
E P KGK K KPVNKDRFISKMFLRGDSVILIL+N
Sbjct: 80 ELP---KGKNK-KPVNKDRFISKMFLRGDSVILILRN 112
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 4/84 (4%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE + GPLS+L +V+ NTQVLI+ R+N+KLL RVKAFDRH NMVLENVKEMWTE
Sbjct: 24 QIEEYELSNGPLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEP 83
Query: 70 PRAGKGKKKSKPVNKDRFISKMFL 93
+ GKG +PVNKDRFISKM+L
Sbjct: 84 QKGGKG----RPVNKDRFISKMYL 103
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 77/104 (74%), Gaps = 8/104 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T++E Q EE E F GP+S+L D++ + V+I+ RNN K++ R+K+FDRHCNMVLENV
Sbjct: 13 TQDELAQLEEFE-FKHGPMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KE+WTE K+ K NK+RFISK+FLRGDSVI++LK PL
Sbjct: 72 KELWTE-------KEGKKLTNKERFISKLFLRGDSVIVVLKAPL 108
>gi|255724860|ref|XP_002547359.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
gi|240135250|gb|EER34804.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
Length = 112
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+SIL ++VK+NT ++I+CRNN KL+G+V+AFDRHCN+VLENVK++W+E
Sbjct: 21 EEYEFNHGPMSILNNAVKNNTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKDLWSED-I 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
KK K V K+RFISK+FLRGDSVI+ILK
Sbjct: 80 KNNKGKKIKSVPKERFISKLFLRGDSVIIILK 111
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 71/92 (77%), Gaps = 7/92 (7%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F GP+S++ DS+ T V+I+ RNN K++ RVKAFD+HCNMVLENVKE+WTE
Sbjct: 25 FKHGPMSLINDSMIAKTPVIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE------- 77
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
K K K +NK+RFISK+FLRGDSVI++LK P++
Sbjct: 78 KNKDKVINKERFISKLFLRGDSVIIVLKAPIS 109
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 74/96 (77%), Gaps = 7/96 (7%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q EE F GP+S++ D++ T ++I+ RNN K++ RVKAFD+HCNMVLENVKE+WTE
Sbjct: 19 QLEEFEFKHGPMSLINDALISKTPIIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE- 77
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
R G +K +NK+RFISK+FLRGDSVI+ILK+P
Sbjct: 78 -RNG-----NKLINKERFISKLFLRGDSVIVILKSP 107
>gi|326472609|gb|EGD96618.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton tonsurans CBS
112818]
gi|326483579|gb|EGE07589.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton equinum CBS
127.97]
Length = 129
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 71/117 (60%), Gaps = 30/117 (25%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 15 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 72 AGKGKKKSKPVNKDRFISKM--------------------------FLRGDSVILIL 102
K K VNKDRFISKM FLRGDSVIL+L
Sbjct: 72 -KPKGGKGKGVNKDRFISKMYVYTKLARTFPSHRICDNTILTRPSRFLRGDSVILVL 127
>gi|351699571|gb|EHB02490.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
Length = 91
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
QVLINC +NKKLLG KAFDR CNMVLEN+KEMWTE P+ G+GKKK KPV KD +ISK+F
Sbjct: 15 QVLINC-HNKKLLGCAKAFDRDCNMVLENMKEMWTEVPKRGQGKKKFKPVRKDHYISKIF 73
Query: 93 LRGDSVILILKNPL 106
L GDSVI++L+NPL
Sbjct: 74 LHGDSVIMVLQNPL 87
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 8/104 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T++E Q EE E F GP+S++ +++ T V+I+ RNN K++ RVK+FDRHCNMVLENV
Sbjct: 13 TQDELAQLEEFE-FKHGPMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENV 71
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KE+W+E +GKK S NK+RFISK+FLRGDSVI++LK PL
Sbjct: 72 KEIWSER----EGKKIS---NKERFISKLFLRGDSVIVVLKAPL 108
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%), Gaps = 7/88 (7%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GPLS++ DSV T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE K+
Sbjct: 28 GPLSLINDSVVSKTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KRG 80
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNPL 106
+K NK+RFISK+FLRGDSVI++LK P+
Sbjct: 81 NKAENKERFISKLFLRGDSVIVVLKAPV 108
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 6/83 (7%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA E ++EEEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 1 MADENEAGKKEEEE-FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 59
Query: 61 NVKEMWTE-----HPRAGKGKKK 78
NV+EMWTE PR + K++
Sbjct: 60 NVREMWTEDFLSRSPRLARAKRR 82
>gi|296418693|ref|XP_002838960.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634953|emb|CAZ83151.1| unnamed protein product [Tuber melanosporum]
Length = 96
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 65/91 (71%), Gaps = 17/91 (18%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ F+ GPLSIL +V+ + QVLI+CRNN+KLL RVKAFDRHCNMVLEN
Sbjct: 21 EKYEFSAGPLSILQTAVRSHNQVLISCRNNRKLLARVKAFDRHCNMVLEN---------- 70
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
+PVNKDRFISKMFLRGDSVIL+L
Sbjct: 71 -------GRPVNKDRFISKMFLRGDSVILVL 94
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ Q E+ F GPL +LT+++ +N VLI+ RNN KLL +VKAFDRHCNM+LENVKE
Sbjct: 14 EKDLQDLEDYEFNNGPLRLLTNAIHNNATVLISLRNNHKLLAKVKAFDRHCNMILENVKE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+WTE + KK + ++RF+SKMFLRGDSVI++LK
Sbjct: 74 IWTETNPDDRNKK----MMRERFVSKMFLRGDSVIVVLK 108
>gi|444706234|gb|ELW47583.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 86
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 27 SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
SVK+NTQVLINCRNN+KLLG VKAF+RHCN+VLEN+KEMWTE P++GKGKKKSKPVNKD
Sbjct: 3 SVKNNTQVLINCRNNEKLLGHVKAFNRHCNVVLENLKEMWTEVPKSGKGKKKSKPVNKDC 62
Query: 87 FISKMFLRGDSVILILKNPL 106
+ISKMFL GDSVI++L NPL
Sbjct: 63 YISKMFLHGDSVIIVLGNPL 82
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 7/91 (7%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F GP+S++ +S+ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE
Sbjct: 25 FKHGPMSLIDESMVLRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 77
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KK +K +NK+RFISK+FLRGDS+I+ILK P+
Sbjct: 78 KKGNKTINKERFISKLFLRGDSIIVILKAPV 108
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+SIL ++VK+++ ++I+CRNN KL+G+V+AFDRHCN+VLENVKE+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDSPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
KK K ++K+RFISKMFLRGDSVI+ILK
Sbjct: 80 KNNKGKKIKSISKERFISKMFLRGDSVIIILK 111
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 68/91 (74%), Gaps = 7/91 (7%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F GPLS++ DSV V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE
Sbjct: 30 FKHGPLSLINDSVLTRRPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KK VN++RFISK+FLRGDSVI++LK P+
Sbjct: 83 KKGKSLVNRERFISKLFLRGDSVIVVLKAPV 113
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+SIL ++VK++T ++I+CRNN KL+G+V+AFDRHCN+VLENVKE+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
KK K ++K+RFISK+FLRGDSVI+ILK
Sbjct: 80 KNNKGKKIKSISKERFISKLFLRGDSVIIILK 111
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE ++EEE F+TGPLS+L SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 65 MWTEHPRAGKGKK 77
MWTE R + K
Sbjct: 63 MWTEVGRTERSLK 75
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%), Gaps = 7/91 (7%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F GP+S++ D++ V+I+ RNN KL+ RVKAFDRHCN+VLENVKE+WTE
Sbjct: 26 FKHGPMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE------- 78
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
KK + +N++RFISK+FLRGDSVI+ILK PL
Sbjct: 79 KKNKQTINRERFISKLFLRGDSVIVILKAPL 109
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 7/88 (7%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GP+S++ D++ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE KK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKG 81
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNPL 106
+N++RFISK+FLRGDSVI++LK P+
Sbjct: 82 KNVINRERFISKLFLRGDSVIVVLKTPV 109
>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 131
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE +GPLSIL + + + QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
K K VNKDRF+SKM+++ ++ +L N
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMYVQTNTCLLATGN 114
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
Query: 4 REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
+ E +E ++ GPL +L++ VK N QVLINCRNN+KLLGRVKAFDRHCN++L V+
Sbjct: 2 KSETANEENRDNPENGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVR 61
Query: 64 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
E+W E + K KKK KDR+IS +FLRGDSVILIL+NP
Sbjct: 62 EIWVEIIKDKKKKKKIN---KDRYISILFLRGDSVILILRNP 100
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GP+S+L ++V +NT V+I+CRNN KL+ +VKAFDRHCN++LENVKE+WTE + KG K
Sbjct: 53 GPMSLLKEAVANNTPVVISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKG-KV 111
Query: 79 SKPVNKDRFISKMFLRGDSVILILK 103
K K+RF+SK+FLRGDSVI+++K
Sbjct: 112 IKVNQKERFVSKLFLRGDSVIVVVK 136
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 3/100 (3%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E +E ++ GPL +L++ VK N QVLINCRNN+KLLGRVKAFDRHCN++L V+E+
Sbjct: 4 ETPTEENRDNPENGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREI 63
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
W E K KKK K +NKDR+IS +FLRGDSVILIL+NP
Sbjct: 64 WVE---VIKDKKKKKKINKDRYISILFLRGDSVILILRNP 100
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
QQ E F GP+SILT + + V+I+ RN+ KL+ +VKAFDRHCNMVLENVKE WT+
Sbjct: 18 QQLEAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTD 77
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G K V ++RF+SKMFLRGDSV++ILK+
Sbjct: 78 ---INNGTK----VTRERFVSKMFLRGDSVVVILKHS 107
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 4 REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
+ E +E ++ GPL +L++ VK N QVLINCRNN+KLLGRVKAFDRHCN++L V+
Sbjct: 2 KSETVVEENRDNPEDGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVR 61
Query: 64 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
E+W E K KKK K +NKDR+IS +FLRGDSVILIL+NP
Sbjct: 62 EIWVE---VVKDKKKKKKINKDRYISILFLRGDSVILILRNP 100
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
QQ E F GP+SILT + + V+I+ RN+ KL+ +VKAFDRHCNMVLENVKE WT+
Sbjct: 34 QQLEAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTD 93
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G K V ++RF+SKMFLRGDSV++ILK+
Sbjct: 94 ---INNGTK----VTRERFVSKMFLRGDSVVVILKHS 123
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 3/92 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE F GP+S++ + N ++I+CRNN KL+G+V+AFDRHCN+VLENVKE+WTE
Sbjct: 21 EEFEFLHGPMSLIHQAQTENLPIVISCRNNHKLVGKVRAFDRHCNLVLENVKELWTEKVT 80
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
GK K+ P ++RFISKMFLRGDSVI+++K
Sbjct: 81 EF-GKTKNVP--RERFISKMFLRGDSVIIVVK 109
>gi|302652082|ref|XP_003017901.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
gi|291181486|gb|EFE37256.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
Length = 111
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 36 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 92
Query: 72 AGKGKKKSKPVNKDRFISKM 91
K K VNKDRFISKM
Sbjct: 93 -KPKGGKGKGVNKDRFISKM 111
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 4 REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
+ E +E ++ GPL +L++ VK N QVLINCRNN+K+LGRVKAFDRHCN++L V+
Sbjct: 2 KSEVTIEENRDNPEDGPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVR 61
Query: 64 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
E+W E K KKK K +NKDR+IS +FLRGDSVILIL+NP
Sbjct: 62 EIWVE---VVKDKKKKKKINKDRYISILFLRGDSVILILRNP 100
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q E + GPLS+L +V+ ++QVLI+ R+N+KLL RVKAFDRHCNM+LENVKEMWTE
Sbjct: 24 QLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTET 83
Query: 70 PRAGKGKKKSKPVNKDRFISKM 91
P KK +PVNKDRFISKM
Sbjct: 84 P--VHNGKKGRPVNKDRFISKM 103
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi strain
B]
Length = 101
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
E +E ++ GPL +L++ VK N QVLINCRNN+KLL RVKAFDRHCN++L V+E+
Sbjct: 4 ETTVEENRDNPEDGPLGLLSECVKDNAQVLINCRNNRKLLARVKAFDRHCNLLLTEVREI 63
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
W E K KKK K +NKDR+IS +FLRGDSVILIL+NP
Sbjct: 64 WVE---VVKDKKKKKKINKDRYISILFLRGDSVILILRNP 100
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 76/101 (75%), Gaps = 8/101 (7%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
+R+E Q EE E GP+S++ +S+ T V+I+ RNN KL+ RVK+FD+HCNMVLENV
Sbjct: 17 SRDELTQLEEFE-MKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENV 75
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
KE+WTE+ GKK VN++RF++K+FLRGDSVI+++K
Sbjct: 76 KEIWTENV---NGKK----VNRERFVAKLFLRGDSVIIVVK 109
>gi|403287226|ref|XP_003934853.1| PREDICTED: uncharacterized protein LOC101043343 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q+ E E F TGPLS+LT SVK+NTQ L+NC +NKKLL VKA DRHCNMVLEN +EM TE
Sbjct: 17 QKHEGEEFNTGPLSVLTKSVKNNTQGLLNCHSNKKLLDPVKASDRHCNMVLEN-EEMRTE 75
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
P++GKGKKKSKPV+KDR+I+KMFL G+ I++L++PL
Sbjct: 76 VPKSGKGKKKSKPVDKDRYIAKMFLCGNWAIVVLRHPL 113
>gi|444729289|gb|ELW69714.1| Deleted in malignant brain tumors 1 protein [Tupaia chinensis]
Length = 1650
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 63/80 (78%), Positives = 73/80 (91%)
Query: 27 SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
++K+ TQVLINCRNNKKLLG VKAFDRH NMVLEN+KE+WTE P++GKGKKKSKPVNKDR
Sbjct: 1567 TLKNITQVLINCRNNKKLLGHVKAFDRHRNMVLENMKEIWTEVPKSGKGKKKSKPVNKDR 1626
Query: 87 FISKMFLRGDSVILILKNPL 106
+ISKMFL GDSVI++L N L
Sbjct: 1627 YISKMFLCGDSVIVVLWNLL 1646
>gi|320037519|gb|EFW19456.1| small nuclear ribonucleoprotein Sm D2 [Coccidioides posadasii str.
Silveira]
Length = 100
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE TGPLSIL + + ++QVLI+CRNN+KLL RVKAFDRHCNMVLENVKEMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 72 AGKGKKKSKPVNKDRFISK 90
K K VNKDRF+SK
Sbjct: 83 -KPKGGKGKGVNKDRFVSK 100
>gi|392297783|gb|EIW08882.1| Smd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 80
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 66/86 (76%), Gaps = 7/86 (8%)
Query: 21 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSK 80
+S++ D++ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE KK
Sbjct: 1 MSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKN 53
Query: 81 PVNKDRFISKMFLRGDSVILILKNPL 106
+N++RFISK+FLRGDSVI++LK P+
Sbjct: 54 VINRERFISKLFLRGDSVIVVLKTPV 79
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 69/108 (63%), Gaps = 8/108 (7%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E K+ EE + GP +LT ++ HNTQ + RNN+K LGRVKAFDRH NM+LEN+ E
Sbjct: 43 ETQKRTAEEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTE 102
Query: 65 MWTEHPRAGKGK----KKSKPVNKDR----FISKMFLRGDSVILILKN 104
MW E + KGK K+ K N+ + +I KMFLRGDSVI L+N
Sbjct: 103 MWIEISKETKGKSPCYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRN 150
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%), Gaps = 4/98 (4%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ Q+ E+ F GP+ +L+ +VK + +LI+ RNN KL+ +VKAFDRHCNM+LENV+E
Sbjct: 14 EKELQELEQYEFNHGPMRLLSKAVKDXSTILISLRNNHKLIAKVKAFDRHCNMILENVRE 73
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
W E + +K + ++RF+ KMFLRGDSVI+IL
Sbjct: 74 FWNETXPNDRKRK----IVRERFVLKMFLRGDSVIVIL 107
>gi|444720876|gb|ELW61643.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 144
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 66/84 (78%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+LT S K+NTQ LINC +KK+LG V+ FDRH MVLENVK M TE P+ GK KKKSKPV
Sbjct: 1 MLTQSAKNNTQELINCFYDKKILGCVETFDRHYTMVLENVKRMRTEFPKNGKDKKKSKPV 60
Query: 83 NKDRFISKMFLRGDSVILILKNPL 106
NKDR+ISKMFL + I++L+NPL
Sbjct: 61 NKDRYISKMFLHRNVGIVVLQNPL 84
>gi|403272537|ref|XP_003928113.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D2-like [Saimiri boliviensis
boliviensis]
Length = 221
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
F +GPLS+LT SVK+ QVLI+C NNKKLLG V AFD HCN VLENVKEM TE
Sbjct: 24 FNSGPLSVLTQSVKNTPQVLISCSNNKKLLGGVXAFDGHCNAVLENVKEMGTEV-PKSGK 82
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
KKSKPVNK R+I MFL D +N L Q
Sbjct: 83 GKKSKPVNKARYIPGMFLLRDPSSCPSQNSLLCSQ 117
>gi|164657289|ref|XP_001729771.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
gi|159103664|gb|EDP42557.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
Length = 104
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
E+ + GPLS+L SV++++QVLI+ RNNKKLL RVKAFDRH NMVLENVKEMWTE P
Sbjct: 21 EQYEISQGPLSVLQQSVRNHSQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP 79
>gi|444721316|gb|ELW62058.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 165
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 29 KHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFI 88
K++TQVL++CRN +KLLGR KA DR CNMV +NVKE+W E P++GKG KKSKPV+KD +
Sbjct: 70 KNSTQVLLDCRN-QKLLGRAKALDRRCNMVPDNVKELWAEVPQSGKG-KKSKPVHKDCHV 127
Query: 89 SKMFLRGDS 97
S+M L G S
Sbjct: 128 SRMLLPGLS 136
>gi|313233805|emb|CBY09974.1| unnamed protein product [Oikopleura dioica]
Length = 53
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
MVLENVKEMW E P+ KGK +PVN+DRFISKMFLRGDSVI++LKNPL
Sbjct: 1 MVLENVKEMWVERPKTSKGKG-GQPVNRDRFISKMFLRGDSVIIVLKNPL 49
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GP +L+ K N++++I+ +N K G ++ FD+HCN++LE+V E+W E + KK
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
K V K++FI K+F RGD+VILI
Sbjct: 76 -KVVIKEKFIPKLFFRGDAVILI 97
>gi|224137176|ref|XP_002327056.1| predicted protein [Populus trichocarpa]
gi|222835371|gb|EEE73806.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 14/98 (14%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE---HPRA 72
F TGPLS L S+K NTQVLIN NNKKLL H +V ++ H A
Sbjct: 21 FGTGPLSFLMISIKRNTQVLINLCNNKKLLA-----HSHHMVVWLAAGRLYPSCRFHAYA 75
Query: 73 ------GKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
GKG++K++ +N++RFISK+FLRGDSVI+IL N
Sbjct: 76 LLVEKTGKGEEKARTINRERFISKIFLRGDSVIVILMN 113
>gi|67522691|ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gi|40745811|gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N Q L+ ++ L RVKAFDRH NMVLENVKEMWTE + GKG +PVNKDRFISK
Sbjct: 5 NIQTLLQKPRSECTLARVKAFDRHSNMVLENVKEMWTEPQKGGKG----RPVNKDRFISK 60
Query: 91 MFL 93
M+L
Sbjct: 61 MYL 63
>gi|429327958|gb|AFZ79718.1| hypothetical protein BEWA_025670 [Babesia equi]
Length = 921
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 47/58 (81%), Gaps = 2/58 (3%)
Query: 48 VKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
VKAFDRHCNM+L + +E+WTE + G GKK+ + KDR +S++FLRGDSVI++LKNP
Sbjct: 865 VKAFDRHCNMILTDARELWTETVKVG-GKKQRSSI-KDRHLSRVFLRGDSVIVVLKNP 920
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 4 REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
+E P+ + E + GPLSIL + V+ N++VL++ RNN+K+LGR ++ N++LE
Sbjct: 6 KEAPQMEVENKDSPAGPLSILEECVRENSKVLVDLRNNRKILGRETRLEK--NVILE 60
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 10/91 (10%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
+ A GP S+L S+K N +V I CRN+K LL V AFD+H N+VL+ V+E+ H
Sbjct: 23 TVADGPFSLLDTSMKENKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEITESH----- 77
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G ++ K R I +FLRG+SV+ I+K P
Sbjct: 78 GSEQ-----KQRTIENLFLRGESVVFIVKLP 103
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
P +L +V N V+I RNN+KL+G ++AFD+H N++LENV+E+WT +
Sbjct: 7 SPFFLLVQAVISNRPVIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCV-------E 59
Query: 79 SKPVNKDRFISKMFLRGDSVILIL 102
+R+I+KM LRGDS++L+L
Sbjct: 60 KNIFYHERYIAKMILRGDSIVLLL 83
>gi|302408451|ref|XP_003002060.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
gi|261358981|gb|EEY21409.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
Length = 96
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE- 68
Q EE F+ GPLSIL +V+ +TQVLI+ RNN+KLL RVKAFDRHCNM + + + E
Sbjct: 24 QLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMCVPPLHRVSPEA 83
Query: 69 -HPRAG 73
PR G
Sbjct: 84 SSPRPG 89
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E+ + E + TGP++ + +V +LI R+N+KL G +KA DRH NM+LE+V E
Sbjct: 8 EDSMEPSEMTNLQTGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVDRHWNMILEHVIE 67
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+ T P A G+ + P+ R I+++FLRGD+VI I NP
Sbjct: 68 I-TPTP-AKPGQPAAAPIQ--RRINRLFLRGDNVICIYPNP 104
>gi|194745332|ref|XP_001955142.1| GF18622 [Drosophila ananassae]
gi|190628179|gb|EDV43703.1| GF18622 [Drosophila ananassae]
Length = 56
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 48/51 (94%)
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
MVLENVKEMWTE PR GKGKKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 1 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 51
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
+ A GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ H
Sbjct: 23 TVADGPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEITESH----- 77
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
G ++ K R I +FLRG+SVI I+K P
Sbjct: 78 GSEQ-----KQRTIENLFLRGESVIFIVKLP 103
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
++P ++E E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ KE
Sbjct: 8 DDPNEKETME--MKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ T + KG+KK + R + K+F+RGD+VIL+
Sbjct: 66 LGTTRGK-NKGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
++P ++E E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ KE
Sbjct: 8 DDPNEKETME--MKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ T + KG+KK + R + K+F+RGD+VIL+
Sbjct: 66 LGTTRGK-NKGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P ++L + L++CR+NKKL G ++A+D+H N+++E+V+E+W E +
Sbjct: 242 PFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQE------SQPDR 295
Query: 80 KPVNKDRFISKMFLRGDSVILILK 103
P ++RFIS++F+RGD VI I++
Sbjct: 296 PPDLRERFISRLFVRGDGVIFIVR 319
>gi|399949825|gb|AFP65482.1| small nuclear ribonucleoprotein SM D2 [Chroomonas mesostigmatica
CCMP1168]
Length = 85
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 6/85 (7%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
PL ++ + N V+I RNNKKLLG ++AFDRH N++++N KE+WT + KKK
Sbjct: 6 SPLDFFSEIIIGNRPVMIFIRNNKKLLGYIRAFDRHMNLIIDNGKEIWT----SKCSKKK 61
Query: 79 SKPVNKDRFISKMFLRGDSVILILK 103
K ++F K+ LRGDS+ILI++
Sbjct: 62 VK--FHEKFFPKLVLRGDSIILIVR 84
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E P ++E E GPLS++ ++ VL++ RNN+K++G+V A+DRH N+++E+ KE
Sbjct: 8 ESPNEKEAME--MKGPLSLVHRAMVKMMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
+ T + +GKKK + R + +F+RGD+VIL+ L++
Sbjct: 66 LGTMRGKN-RGKKKRQGCGFSRRLGNVFIRGDTVILVAGGAGGLQE 110
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+ P ++EE E GPLS++ ++ VL++ RNN+K++G+V A+DRH N+++ + KE
Sbjct: 8 DSPNEKEEME--MKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ R KGKKK + + R + +F+RGD+VIL+
Sbjct: 66 IGNMRGR-NKGKKKRQGCDFSRRLGNVFIRGDTVILV 101
>gi|402077069|gb|EJT72418.1| hypothetical protein GGTG_09284, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 142
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 5/57 (8%)
Query: 10 QEEEES-----FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61
QE EE F+ GPLSIL +V QVLI+ RNN+KLL RVKAFD HCNMVLEN
Sbjct: 86 QEREEGDLPHEFSAGPLSILQSAVCSRAQVLISIRNNRKLLARVKAFDYHCNMVLEN 142
>gi|443924031|gb|ELU43110.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 125
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMV 58
+Q EE + GPLS+L SV+++TQVLI+ RNNKKLL RVKAFDRH NMV
Sbjct: 65 RQLEEHEISQGPLSVLQQSVRNHTQVLISLRNNKKLLARVKAFDRHSNMV 114
>gi|449292825|gb|EMC90804.1| Small nuclear ribonucleoprotein Sm D2 [Columba livia]
Length = 54
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 49/50 (98%)
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
MVLENVKEMWTE P++GKGKKKSKPVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 50
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 7 PKQQEEEESFAT-GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
P E+ES GPLS++ ++ VLI+ RNN+K+ G+V A+DRH N+++ +E
Sbjct: 7 PDNPGEKESMEMKGPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREF 66
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T R KG+KK + R + +F+RGD+VIL+
Sbjct: 67 GTARGR-NKGRKKRQGSEFSRKLGNVFIRGDTVILV 101
>gi|342180098|emb|CCC89574.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma
congolense IL3000]
Length = 111
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
S A GP +L +VK+ T+V I R NK L+ V AFD+H N+VL + E+ +
Sbjct: 28 SVAEGPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELMMINDE--- 84
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K+R I MFLRG SV+ I+K P
Sbjct: 85 --------QKERSIRNMFLRGASVVFIVKLP 107
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GP S+L ++++ T+V I R NK L+ V AFD+H N+VL +V E+ + +
Sbjct: 32 GPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVELAMVNKQ------- 84
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
K+R I MFLRG SV+ I+K P
Sbjct: 85 ----QKERSIRNMFLRGGSVVFIVKLP 107
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
S A GP S+L +V+ T+V I R NK L+ V AFD+H N+VL + E+
Sbjct: 28 SVAAGPFSLLESAVRDGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVEL--------- 78
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K ++R I MFLRG SV+ ++K P
Sbjct: 79 --TMVKNEQRERSIRNMFLRGSSVVFVVKLP 107
>gi|14596019|gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 135
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 34/38 (89%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK 49
EEE F TGPLS+L SVK+NTQVLINCRNN+KLLGRV+
Sbjct: 15 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
GP S+L ++++ T+V I R NK L+ V AFD+H N+VL +V E+ +
Sbjct: 32 GPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVELAMVNKE------- 84
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
K+R I MFLRG SV+ I+K P
Sbjct: 85 ----QKERSIRNMFLRGGSVVFIVKLP 107
>gi|9837176|gb|AAG00462.1|AF280394_1 Sm-D2 [Trypanosoma brucei]
gi|261326673|emb|CBH09635.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei gambiense
DAL972]
Length = 111
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
S A GP +L +VK+ T+V I R NK L+ V AFD+H N+VL + E+ +
Sbjct: 28 SVAEGPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTMVNNE--- 84
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K+R I MFLRG SV+ I++ P
Sbjct: 85 --------QKERSIRNMFLRGASVVFIVRLP 107
>gi|84043878|ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|33348718|gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358544|gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
Length = 111
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
S A GP +L +VK+ T+V I R NK L+ V AFD+H N+VL + E+ +
Sbjct: 28 SVAEGPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTMVNNE--- 84
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
K+R I MFLRG SV+ I++ P
Sbjct: 85 --------QKERSIRNMFLRGASVVFIVRLP 107
>gi|313218736|emb|CBY43160.1| unnamed protein product [Oikopleura dioica]
Length = 58
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 33/34 (97%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK 49
F TGPLS+LT+SV++NTQVLINCRNN+KL+GRVK
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVK 58
>gi|165934067|gb|ABY74561.1| small nuclear ribonucleoprotein D2 (predicted) [Callithrix jacchus]
Length = 53
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
MVLENVKEMWTE KKSKPV+KDR+ISKMF RGDSVI++L+NPL
Sbjct: 1 MVLENVKEMWTE-VPKSGKGKKSKPVSKDRYISKMFRRGDSVIVVLRNPL 49
>gi|303314445|ref|XP_003067231.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106899|gb|EER25086.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 44
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 4/46 (8%)
Query: 57 MVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
MVLENVKEMWTE P+ K K VNKDRF+SKMFLRGDSVIL+L
Sbjct: 1 MVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMFLRGDSVILVL 42
>gi|301760133|ref|XP_002915871.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
Length = 182
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EEP++ E+ ES GPLS+LT S + NT +LI+ RN++K VKA D H +
Sbjct: 87 TPEEPEKWEDRESN-MGPLSVLTVS-QDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS- 143
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
WTE PRA + V+K +S++FL D V+L+ +N L Q
Sbjct: 144 ---WTESPRAARA------VSKVCHLSRLFLCRDLVVLVPQNTLIAGQ 182
>gi|281352778|gb|EFB28362.1| hypothetical protein PANDA_003898 [Ailuropoda melanoleuca]
Length = 107
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 3 TREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
T EEP++ E+ ES GPLS+LT S + NT +LI+ RN++K VKA D H +
Sbjct: 12 TPEEPEKWEDRES-NMGPLSVLTVS-QDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS- 68
Query: 63 KEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLALKQ 110
WTE PRA + V+K +S++FL D V+L+ +N L Q
Sbjct: 69 ---WTESPRAARA------VSKVCHLSRLFLCRDLVVLVPQNTLIAGQ 107
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 7/84 (8%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P ++ V+++ V+I RNNK+++G++ +D+H N++LENV E+ G+ S
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENVNEI------KFVGENFS 56
Query: 80 KPVN-KDRFISKMFLRGDSVILIL 102
+ + K +FI K+FLRGD+++LIL
Sbjct: 57 ELIKIKSKFIPKVFLRGDNIVLIL 80
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + QV + CR N++L G + A+D H NMVL NV+E + E +
Sbjct: 7 PLDLIRLSL--DEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + K R I +FLRGD +IL+
Sbjct: 65 KKLKKRR-IEMLFLRGDLIILV 85
>gi|442746065|gb|JAA65192.1| Putative small nuclear ribonucleoprotein d2 polypeptide, partial
[Ixodes ricinus]
Length = 131
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 16 FATGPLSILTDSVKHNTQVL---INCRNNKKL--LGRVKAFDRHCNMVLENVKEMWTEHP 70
F TGP + D+V+ T L NKKL +G +CNM +ENVKEMWTE
Sbjct: 13 FNTGP-PLRADAVRTKTNTLSSHTTAGTNKKLAWVGVKDIRTVYCNMFVENVKEMWTETS 71
Query: 71 RA-GKGKKKSKPV-NKDR--FISKMFLRGDSVILILKNP 105
+ ++++ PV KDR +MFLRGDSVIL+L P
Sbjct: 72 NERERYREETNPVRTKDRPTIYQRMFLRGDSVILVLNEP 110
>gi|242087889|ref|XP_002439777.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
gi|241945062|gb|EES18207.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
Length = 105
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ GKGKK + PVNKDRFISK+FLRG+ VI++L++P
Sbjct: 69 PKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDP 104
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata strain
Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
+ + C+N ++L+GR+ AFD HCNMVL +V E T K ++ V K R +F+
Sbjct: 22 IYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTKVTK-RDNGTIFV 80
Query: 94 RGDSVILI 101
RGDS++L+
Sbjct: 81 RGDSLVLL 88
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 15/97 (15%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH--- 69
+ S + PL ++ S+ N V + R ++L G + A+D HC+MVL NV+E E+
Sbjct: 5 DTSGGSEPLDLIGLSLNEN--VFVKLRGGRELYGLLHAYDIHCSMVLGNVEETVFEYVEG 62
Query: 70 -PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
P+ KKKS+ +F+RGDSVIL+ NP
Sbjct: 63 SPKLEARKKKSE---------MLFVRGDSVILVTSNP 90
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC 50439]
Length = 92
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P ++ S+ QV CR ++ L GR+ A+D H NMVL V+E+ P +G K
Sbjct: 10 PFELVKLSLDERIQV--KCRGDRYLRGRLVAYDSHLNMVLSEVEEVI--EPPVKEGVKHR 65
Query: 80 KPVNKDRFISKMFLRGDSVILILKNP 105
+P+ +D + +F+RGD +IL+ P
Sbjct: 66 RPIRRD--LDTIFVRGDGIILVNPPP 89
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ + +V + RN+++L GR++AFD+H NMVL +V+E T +
Sbjct: 17 PLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETIT-----------T 63
Query: 80 KPVNKDRF----------ISKMFLRGDSVILI 101
+ V++D F + +F+RGDSVIL+
Sbjct: 64 REVDEDTFEEIYRQSKRVVPMLFVRGDSVILV 95
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ + +V + RN+++L GR++AFD+H NMVL V+E T +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-----------T 63
Query: 80 KPVNKDRF----------ISKMFLRGDSVILI 101
+ V++D F + +F+RGDSVIL+
Sbjct: 64 REVDEDTFEEIYKQTKRVVPMLFVRGDSVILV 95
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ + +V + RN+++L GR++AFD+H NMVL V+E T +
Sbjct: 17 PLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-----------T 63
Query: 80 KPVNKDRF----------ISKMFLRGDSVILI 101
+ V++D F + +F+RGDSVIL+
Sbjct: 64 REVDEDTFEEIYRQSKRVVPMLFVRGDSVILV 95
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK-MF 92
+ + C+N ++L+GR+ AFD HCNMVL V E T G+ +P R S+ +F
Sbjct: 22 IYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITT--VDGEPNTNQQPNKVTRRDSRTVF 79
Query: 93 LRGDSVILI 101
+RGDS+IL+
Sbjct: 80 VRGDSLILL 88
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 17 ATGPLSILTDSVKHNTQ--VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE---HPR 71
TG L D ++ N + + C+ ++++GR+ A+D HCNM+L + KE T P
Sbjct: 3 TTGSLQQPLDMIRLNLDEVIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPT 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ KKS V +D +F+RGDS+IL+
Sbjct: 63 TNEEIKKS--VQRDS--GTVFIRGDSLILL 88
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW---TEHPRAGKGK 76
PL I+ V + +V I CR +++++G++ A+D H NMVL +V+E+ T P G +
Sbjct: 10 PLDIV--RVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDEQ 67
Query: 77 KKSKPVNKDRFISKMFLRGDSVILI 101
K R + +FLRGD++IL+
Sbjct: 68 TKKTT----RRLPLIFLRGDAIILV 88
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE---MWTEHPRAGKGKKKSKPVNKDRFISK 90
V I + N+++ G++ A+D HCN++LE+ E + TE P G N D
Sbjct: 22 VYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGTESTSVNTKNSD----V 77
Query: 91 MFLRGDSVILI 101
+F+RGDS+IL+
Sbjct: 78 LFVRGDSIILV 88
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW---TEHPRAGKGK 76
PL I+ V + +V I CR +++++G++ A+D H NMVL +V+E+ T P G +
Sbjct: 10 PLDIV--RVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQ 67
Query: 77 KKSKPVNKDRFISKMFLRGDSVILI 101
K R + +FLRGD++IL+
Sbjct: 68 TKKTT----RRLPLIFLRGDAIILV 88
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
Length = 96
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSK-PVNKDRFISKMF 92
VL+ R ++L G+++ +D HCNMVL + +E G + SK P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKEPIVKKT--AMVF 83
Query: 93 LRGDSVILI 101
+RGDSVILI
Sbjct: 84 VRGDSVILI 92
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P+ +L S+ + +V + RN++++ GR++AFD+H NMVL V+E T +
Sbjct: 17 PIDLLRLSL--DERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETIT-----------T 63
Query: 80 KPVNKDRF----------ISKMFLRGDSVILI 101
+ V++D F + +F+RGDSVIL+
Sbjct: 64 REVDEDTFEEIYRQTKRVVPMLFVRGDSVILV 95
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P+ ++ S+ N V I R +KL G+++AFD+H N++L NV EM+ E K ++
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRT 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
PV +++RGD VILI
Sbjct: 60 FPV--------LYIRGDLVILI 73
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + CRN+++L G++ AFD+H NMVL +V+E T +
Sbjct: 5 PLDLIKLSI--DERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITS--TEEDDETGE 60
Query: 80 KPVNK-DRFISKMFLRGDSVILI 101
+ VNK R + +F+RGD V+L+
Sbjct: 61 EIVNKRTRSVGMLFVRGDIVVLV 83
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 14/97 (14%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLG----RVKAFDRHCNMVLENVKEMWTEHPRA-- 72
GPLS+L ++ +V I RN + + G + AFD++ N V +++E ++ R
Sbjct: 115 GPLSLLYRALHEKKRVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEERYSVRVRKEK 174
Query: 73 ----GKGKKKSKP----VNKDRFISKMFLRGDSVILI 101
GKG+ K++ ++R +S+MFLRG+SV+L+
Sbjct: 175 EYVNGKGETKTRRRRVIEQRERKVSQMFLRGESVVLV 211
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 99
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQ--VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
E ++ AT P S D V+ + V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 3 EADAGATAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIV 62
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
++ K + K +F+RGDSV+LI
Sbjct: 63 EEDESEREMIKTIKKQE--EMLFVRGDSVVLI 92
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 64
+P+Q++EE PL ++ + + VL+ R +++ G+++ +D HCNMVL + E
Sbjct: 5 QPQQKQEE------PLDLI--RYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEY 56
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 107
++ E+ +GK +F+RGDSVILI +P+A
Sbjct: 57 IYAENQDKPQGKST----------DMVFIRGDSVILI--SPVA 87
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M+T + QQ +E PL ++ + + V++ R ++L G+++ +D HCNMVL
Sbjct: 1 MSTVKTEHQQLQE------PLDLI--RFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLS 52
Query: 61 NVKE-MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ E ++ + P KKK+ V F+RGDSVILI
Sbjct: 53 DATETIYGDSPDTKPVKKKTDMV---------FVRGDSVILI 85
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
++ + C+ +++L+G++ A+D H NM+L NV+E + + + K +R + +F
Sbjct: 21 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKM---ERNLDMVF 77
Query: 93 LRGDSVILI 101
+RGDS+IL+
Sbjct: 78 VRGDSIILV 86
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
+AT EE EE PL ++ S+ + ++L+ RN+++L GR+ A+D+H NMVL
Sbjct: 4 VATNEETSNTVEE------PLDLVRLSL--DERILVKMRNDRELRGRLHAYDQHLNMVLG 55
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+V+E T + ++ +K R I +++RGD VIL+
Sbjct: 56 DVEETITTVEIDDETFEELYKTSK-RQIPMLYVRGDGVILV 95
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P+ ++ S+ N V I R +KL G+++AFD+H N++L NV E++ E K ++
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEIYQE-------KTRT 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
PV +++RGD VILI
Sbjct: 60 FPV--------LYIRGDLVILI 73
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 9/83 (10%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
G + +L D V V + R +++L GR+ A+D HCN+VL +V+E T + + + +
Sbjct: 14 GLVRLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE--THYMQDEEDEAD 66
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
K V+ R + +F+RGDSV+LI
Sbjct: 67 LKTVS--RKLEMLFVRGDSVVLI 87
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETFEEL 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
NK R + MF+RGD VIL+
Sbjct: 74 FRTNK-RTVPMMFIRGDGVILV 94
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 9/83 (10%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
G + +L D V V + R +++L GR+ A+D HCN+VL +V+E T + + + +
Sbjct: 14 GLVRLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE--THYIQDEDDESE 66
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
K V+ R + +F+RGDSV++I
Sbjct: 67 LKTVS--RKLEMLFVRGDSVVMI 87
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA EEP E PL ++ S+ N V + R +++L GR+ A+D HCN+VL
Sbjct: 1 MADTEEPGADPVNE-----PLDLVRLSL--NETVFVKLRGDRELQGRLHAYDSHCNLVLG 53
Query: 61 NVKEMWTEHPRAGKG------KKKSKPVNKDRFISKMFLRGDSVILI 101
V E + G KK+S+ +F+RGDSV+LI
Sbjct: 54 EVTETIYQVAEEAGGEDVRTLKKQSE---------MLFVRGDSVVLI 91
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 100
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E G++ K + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETIKTIKKQE--EMLFV 85
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 86 RGDSVVLI 93
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE+S PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEDSAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ +K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVKTSK-RVVPYLFVRGDGVILV 90
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL I+ S+ H QVL+ N+K+ G + FD + NMVLENV+E E P+
Sbjct: 23 PLEIIDKSIGHKIQVLM--TNDKEFKGTLIGFDDYVNMVLENVEEFDNEGPKG------- 73
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
+ I KM L G V +++
Sbjct: 74 ------KVIKKMLLNGSQVAMLI 90
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFISKMF 92
VL+ R ++L G+++ +D HCNMVL + +E ++T + +P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEEPIVKKT--AMVF 83
Query: 93 LRGDSVILI 101
+RGDSVILI
Sbjct: 84 VRGDSVILI 92
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ SV ++ + CR +++L G ++A+D+H NMVL +V+E T + ++
Sbjct: 7 PLDLIKLSVAE--RIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEEL 64
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+K R I +F+RGD VIL+
Sbjct: 65 IKQSK-RTIEMLFVRGDVVILV 85
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFIS 89
+ QV + R +++L GR+ A+D HCN+VL +V+E ++T G ++ +
Sbjct: 22 DEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYT----VGDDEEDDSVKTIKKQSE 77
Query: 90 KMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 78 MLFVRGDSVVLI 89
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E G++ K + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLFV 85
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 86 RGDSVVLI 93
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ SV ++ + CR +++L G ++A+D+H NMVL +V+E T + ++
Sbjct: 7 PLDLIKLSVAE--RIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEEL 64
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+K R I +F+RGD VIL+
Sbjct: 65 IKQSK-RTIEMLFVRGDVVILV 85
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE+ PL ++ S+ + ++ + R++++L G++ AFD+H NM+L +V+E T
Sbjct: 4 EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + QV I + +++L G + A+D+H NMVL NV+E E K +
Sbjct: 9 PLDLIRLSL--DEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHE-IDIDKETNEQ 65
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPL 106
+ + R I +FLRGD VIL++ + L
Sbjct: 66 QMKSTTRKIGMLFLRGDGVILVVNSAL 92
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+E +QQ PL ++ S+ + +V + RN ++L GR+ A+D+H NMVL V+E
Sbjct: 4 DEDQQQAPASQTVEEPLDLIRLSL--DERVYVKMRNERELRGRLHAYDQHLNMVLGEVEE 61
Query: 65 MWT----EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T + + K++K R I +F+RGD VIL+
Sbjct: 62 TVTAVEIDEETYEEIYKQTK-----RTIPMLFVRGDGVILV 97
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S+ + ++ + R +++L GR+ A+D+H NM+L V+E T
Sbjct: 3 EEDATVKEPLDLIRLSL--DERIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEI 60
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ NK R + +F+RGD VIL+
Sbjct: 61 DDETYEEIIKTNK-RAVPFLFVRGDGVILV 89
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 5 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 63 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 91
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus ND90Pr]
Length = 96
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW--------TEHPRAGKGKKKSKPVNKD 85
V++ R +++L GR+ A+D HCN+VL +V+E + PR KK+S+
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRVRTIKKQSE----- 76
Query: 86 RFISKMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 77 ----MLFIRGDSVVLI 88
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW--------TEHPRAGKGKKKSKPVNKD 85
V++ R +++L GR+ A+D HCN+VL +V+E + PR KK+S+
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEEDDDQEPRVRTVKKQSE----- 76
Query: 86 RFISKMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 77 ----MLFVRGDSVVLI 88
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH--- 69
A GPL +L ++ T+V + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 110 AFGPLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKR 169
Query: 70 -------PRAGKGKKKSKP---VNK--------DRFISKMFLRGDSVILILK 103
P K K+ + P V K +R + +M LRG+ V +I+K
Sbjct: 170 KAPALGAPSGVKRKEDTAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M+T +QQ+E PL ++ + + VL+ R +++ G+++ +D HCNM+L
Sbjct: 1 MSTVRTEQQQQE-------PLDLV--RYQLDELVLVKLRGAREMKGKLQGYDSHCNMILS 51
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ E + P +PV K+ +F+RGDSVILI
Sbjct: 52 DAVEYIYDVPEG------QEPVTKN--TDMVFVRGDSVILI 84
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW--------TEHPRAGKGKKKSKPVNKD 85
V++ R +++L GR+ A+D HCN+VL +V+E + PR KK+S+
Sbjct: 22 VILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRVRTVKKQSE----- 76
Query: 86 RFISKMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 77 ----MLFIRGDSVVLI 88
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P + +++ VL+ R+ + G +KA+DRH N+V E W E+ K K
Sbjct: 7 ASPYAFFDEALALRKPVLVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIEYKEDK 66
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKN 104
KS LRGD+VI+++ N
Sbjct: 67 KS-----------FMLRGDNVIMVVSN 82
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAG 73
++ PL +L S+ + ++ + RN ++L GR+ AFD+H NM+L +V+E T
Sbjct: 13 QALVEEPLDLLRLSL--DERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDD 70
Query: 74 KGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 71 ETYEEIYRQVK-RSIPMLFVRGDGVILV 97
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 6 EPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
+P+Q+E+++ PL ++ + + VL+ R ++L G+++ +D HCNMVL + +E
Sbjct: 5 QPEQREDQQ-----PLDLI--RFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEF 57
Query: 66 WTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K K P+ K +F+RGDSVILI
Sbjct: 58 IYSLDENSKIK---DPIVKK--TDMVFVRGDSVILI 88
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S++ ++ + R++++L G++ AFD+H NM+L +V+E+ T
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH--- 69
A GPL +L ++ T+V + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 110 AFGPLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKR 169
Query: 70 -------PRAGKGKKKSKP---VNK--------DRFISKMFLRGDSVILILK 103
P K K+ + P V K +R + +M LRG+ V +I+K
Sbjct: 170 KAPALGAPSGVKRKEDTAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S++ ++ + R++++L G++ AFD+H NM+L +V+E+ T
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW--------TEHPRAGKGKKKSKPVNKD 85
V++ R +++L GR+ A+D HCN+VL +V+E + PR KK+S+
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVRTVKKQSE----- 76
Query: 86 RFISKMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 77 ----MLFVRGDSVVLI 88
>gi|156544183|ref|XP_001606444.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia
vitripennis]
Length = 225
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 25/112 (22%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH--- 69
A GPL +L +++ +V + RN + G V+A FDRH N+ LE+ E+WT
Sbjct: 112 ALGPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWTRKVKR 171
Query: 70 ------------------PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
PR +K+ K +R + ++ LRG+ V LI K
Sbjct: 172 KAPALGDPRPAELAPDNVPRVIVKEKQGKFETLERHVPQLLLRGEQVALIAK 223
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
Q ++EE PL ++ S+ + ++ + R +++L G++ A+D+H NM+L NV+E
Sbjct: 3 QSKKEEGSIEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSNVEETIK- 59
Query: 69 HPRAGKGKKKSKPVNKD--RFISKMFLRGDSVILI 101
K ++ + + K+ R I +F+RGD VILI
Sbjct: 60 --VVEKDEETDEEIVKNIKRNIDMLFVRGDGVILI 92
>gi|443924030|gb|ELU43109.1| hypothetical protein AG1IA_02870 [Rhizoctonia solani AG-1 IA]
Length = 50
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVIL 100
MWTE + K K VNKDRFISKMFLRGDSVIL
Sbjct: 1 MWTETQKG----KNGKTVNKDRFISKMFLRGDSVIL 32
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S++ ++ + R++++L G++ AFD+H NM+L +V+E+ T
Sbjct: 3 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 60
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 61 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 89
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ FD+H NM++ V+E T + ++
Sbjct: 17 PLDLVRLSL--DERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPL 106
+ R I +F+RGD VILI +PL
Sbjct: 75 YRTTQ-RTIPMIFIRGDGVILISPSPL 100
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 6 EPKQQEEEESFATG-PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+P EE A PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E
Sbjct: 1 QPAAMASEEDVAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 58
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ T + ++ +K R I +F+RGD VIL+
Sbjct: 59 IVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDGVILV 94
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT----EHPRAGKG 75
PL ++ S+ + ++ + RN++++ GR+ AFD+H NM+L V+E T + +
Sbjct: 20 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 77
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K++K R I +F+RGD++IL+
Sbjct: 78 HKQTK-----RHIPMLFVRGDAIILV 98
>gi|209736444|gb|ACI69091.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 59
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 24/26 (92%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNN 41
F TGPLS+LT SVK+NTQVL+NCRNN
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNN 49
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ + R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRATR-RTVPFLFVRGDGVILV 90
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ + R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q+ + + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 1 QQPQTAVVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV 58
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 59 EIDEETYEEIYKTTK-RNIPMLFVRGDGVILV 89
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans morsitans]
Length = 102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 17 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 75 YKTTK-RTIPMLFVRGDGVILV 95
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N V + R +++L GR+ A+D HCN+VL +V E T + + + + V K
Sbjct: 24 NETVFVKLRGDRELAGRLHAYDSHCNLVLGDVTE--TVYVWDDEDEDNVRAVKKQS--EM 79
Query: 91 MFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 80 LFVRGDSVVLI 90
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKTTK-RTIPMLFVRGDGVILV 96
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 15 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 73 YKTTK-RTIPMLFVRGDGVILV 93
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S+ + ++ + R++++L G++ AFD+H NM+L +V+E T
Sbjct: 4 EEDATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE---MWTEHPRAGKGKKKSKPVNKDRF 87
+ +V+I CR+ +++ G++ A+D+H NMV+ N KE + T P KK N R
Sbjct: 383 DEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNNEVKK----NVVRN 438
Query: 88 ISKMFLRGDSVILI 101
++LRGD+VILI
Sbjct: 439 FEALYLRGDAVILI 452
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 18 PLDLIRLSL--DERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEI 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKSTK-RSIQMLFVRGDGVILV 96
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 15 PLDLIRLSL--DEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+K R I +F+RGD VIL+
Sbjct: 73 YKTSK-RTIPMLFVRGDGVILV 93
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE-------HPRA 72
PL ++ S+ + ++ + RN ++L GR+ A+D+H NM+L +V+E T +
Sbjct: 16 PLDLVRLSL--DEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEV 73
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K K+S P+ +F+RGD VIL+
Sbjct: 74 YKSTKRSIPM--------LFVRGDGVILV 94
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 12 EEESFATGPLSILTDSVKH--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
EEE P+ D ++ + ++ + RN ++L GR+ AFD+H NMVL + +E T
Sbjct: 3 EEEQLPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTV 62
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 63 EIDEETYEEVYKTTK-RTIPMLFVRGDGVILV 93
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE S PL ++ + N V + R +++L G++ A+D HCN+VL +V+E
Sbjct: 6 EESSHVAEPLDLV--RLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDD 63
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ + K +++ +F+RGDSV+LI
Sbjct: 64 DEEEGDEVKTISRKS--EMLFVRGDSVVLI 91
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++ + R+N++L GR+ A+D+H NMVL +V+E+ T + ++ N R
Sbjct: 27 DERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDETYEEVYTKNT-RTFPM 85
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 86 LFIRGDGVILV 96
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE+S PL ++ S+ + ++ + R++++L G++ A+D+H NM+L V+E+ T
Sbjct: 4 EEDSAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ ++ R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTSR-RTVPYLFVRGDGVILV 90
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ ++ + CR +++L G + A+D+H NMVL V+E T + ++
Sbjct: 7 PLDLVKLSI--GERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVTVQELDEETYEEI 64
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+K R + +F+RGD+VIL+
Sbjct: 65 IKQSK-RQVEMLFIRGDAVILV 85
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 8 EQQQSSNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 65
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 66 VEIDEETYEELYKSTK-RNIPMLFVRGDGVVLV 97
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 63 DDETYEEIVRTTK-RTIPFLFVRGDGVILV 91
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL V+E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIEIDEETYEEV 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 74 YRTTK-RTIPMLFVRGDGVILV 94
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E T
Sbjct: 4 EEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ ++ R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVRTSR-RTVPFLFVRGDGVILV 90
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 13 EESFATGPLSILTDSVKH--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
E++ A P++ D V+ + V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 5 EDAGAGAPVNEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE 64
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
++ + V K +F+RGDSV+LI
Sbjct: 65 EDANEEEVVRTVKKQS--EMLFVRGDSVVLI 93
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 15/78 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT-------EHPRAGKGKKKSKPVN 83
+ ++ + RN+++L GR+ A+D+H NM+L +V+E T + K K++ P+
Sbjct: 25 DEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYEEVYKSTKRNIPM- 83
Query: 84 KDRFISKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 84 -------LFVRGDGVILV 94
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Leptosphaeria
maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Leptosphaeria
maculans JN3]
Length = 96
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 17/76 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW--------TEHPRAGKGKKKSKPVNKD 85
V++ R +++L GR+ A+D HCN+VL +V+E PR KK+S+
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRVRTVKKQSE----- 76
Query: 86 RFISKMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 77 ----MLFVRGDSVVLI 88
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT----EHPRAGKG 75
PL ++ S+ + ++ + RN++++ GR+ AFD+H NM+L V+E T + +
Sbjct: 18 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 75
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K++K R I +F+RGD++IL+
Sbjct: 76 HKQTK-----RQIPMLFVRGDAIILV 96
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Danio rerio]
Length = 102
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 6 EQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 64 VEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M + P G + + + K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGPEEHSTVNIAK-RKMDM 80
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 81 LFVRGDGVILV 91
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K + K +F+
Sbjct: 27 VFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Megachile
rotundata]
Length = 103
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL +E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R IS +F+RGD VIL+
Sbjct: 74 YRTTK-RNISMLFVRGDGVILV 94
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 6 EQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTT 63
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 64 IEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 6 EQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 64 IEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|71051464|gb|AAH14600.1| LOC645339 protein [Homo sapiens]
Length = 55
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 57 MVLENVKEMWTEHPRAGKGKKK---SKPVNKDRFISKMFLRGDSVI 99
MVLENVKEM TE P+ G G K SKP NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + C+ ++++ G++ A+D H NM+L N +E + + + K +R + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQSVTENDEESIKKI---ERNLDMVF 77
Query: 93 LRGDSVILI 101
+RGDS+IL+
Sbjct: 78 VRGDSIILV 86
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K + K +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLFV 83
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 84 RGDSVVLI 91
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ + + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDDENEEETIRTIKKQE--EMLFV 85
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 86 RGDSVVLI 93
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL +E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R IS +F+RGD VIL+
Sbjct: 74 YRTTK-RNISMLFVRGDGVILV 94
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 74 YKSTK-RNIPMLFVRGDGVILV 94
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana ARSEF
2860]
Length = 95
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N V + R +++L G++ A+D HCN+VL V+E T + ++++K V+ R
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE--TIYGVEEDDEEEAKSVS--RKSEM 78
Query: 91 MFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 79 LFVRGDSVVLI 89
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K + K +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLFV 83
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 84 RGDSVVLI 91
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici IPO323]
Length = 94
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ N V + R +++L GR+ A+D HCN+VL +V E T + + +
Sbjct: 15 PLDLVRLSL--NEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTE--TVYVVDEEDEDNV 70
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ V K +F+RGDSV+LI
Sbjct: 71 RTVKKQS--EMLFVRGDSVVLI 90
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K + K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 4 EQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 61
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 62 IEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 93
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ N V + R +++L GR+ A+D HCN+VL +V E T + + +
Sbjct: 15 PLDLVRLSL--NETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTE--TVYLVDEEDEDNV 70
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ V K +F+RGDSV+LI
Sbjct: 71 RTVKKQS--EMLFVRGDSVVLI 90
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 1 MAT-REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59
M+T R E +QQE PL ++ + + VL+ R +++ GR++ +D HCNMVL
Sbjct: 1 MSTIRTESQQQE--------PLDLI--RFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVL 50
Query: 60 ENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+E KK++ V F+RGDSVILI
Sbjct: 51 SEAEEYIYSAGDEETVVKKTEMV---------FVRGDSVILI 83
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++N R+N+KL G V+ D H NM+L +V E+ + KG KK + +R I
Sbjct: 20 NCPCIVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSK-NKGVKKREGTTVERKIKC 78
Query: 91 MFLRGDSVI 99
+ LRGD+VI
Sbjct: 79 LVLRGDNVI 87
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Brachypodium distachyon]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ + R I +F+RGD VIL+
Sbjct: 63 DDETYEEIVRTTR-RTIPFLFVRGDGVILV 91
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC 30864]
Length = 106
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 7 PKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66
P E + PL ++ S+ + ++L+ R +++L GR+ A+D+H NM+L +V+E
Sbjct: 8 PGHAEAVSTKVDVPLDLIKLSL--DERILVKMRGDRELRGRLHAYDQHLNMILSDVEETV 65
Query: 67 TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T + ++ K R + +F+RGD VIL+
Sbjct: 66 TTVEIDEETFEEMVKTTK-REVPMLFVRGDGVILV 99
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 20/100 (20%)
Query: 11 EEEESFAT---GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW- 66
E E++ AT PL ++ S+ N V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 3 ESEDAGATPVNEPLDLVRLSL--NEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVY 60
Query: 67 -----TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
E KK+S+ +F+RGDSV+LI
Sbjct: 61 VVDEEDEQENVRTVKKQSE---------MLFVRGDSVVLI 91
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
+ES PL ++ S+ + +V + RN+++L G++ ++D+H NM+L V+E+ T
Sbjct: 22 DESTVKEPLDLVRLSL--DERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVD 79
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ NK R + +F+RGD+V LI
Sbjct: 80 EETYEEIIKSNK-RSVPYLFVRGDAVTLI 107
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ + + K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQETLRTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride IMI
206040]
Length = 97
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE S PL ++ + N V + R +++L G++ A+D HCN+VL V+E
Sbjct: 6 EETSHVAEPLDLV--RLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDD 63
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ + K +++ +F+RGDSV+LI
Sbjct: 64 DEEESDEVKTISRKS--EMLFVRGDSVVLI 91
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 17/87 (19%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
G +S+L +S++ N VL+ + +++ G++K++D H N+VLEN +E+ +G
Sbjct: 4 GTISVLAESLEKN--VLVKLKGGREIRGQLKSYDYHLNLVLENAEEI--------RG--- 50
Query: 79 SKPVNKDRFISKMFLRGDSVILILKNP 105
+ R + + +RGD+VIL+ P
Sbjct: 51 ----TRTRQLGTIIVRGDNVILVSPAP 73
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + C+ ++++ G++ A+D H NM+L N +E + + + K +R + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESVKKI---ERNLDMVF 77
Query: 93 LRGDSVILI 101
+RGDS+IL+
Sbjct: 78 VRGDSIILV 86
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D H NMVL + +E+ T K K+ + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFV 80
Query: 94 RGDSVILI 101
RGDSVILI
Sbjct: 81 RGDSVILI 88
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K + K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEIIKTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE--- 68
EEE+ PL ++ S+ + +V + + ++L G++ A+D+H NM+L +V+E T
Sbjct: 3 EEENTVREPLDLIRLSL--DEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEI 60
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ K+ + R + +F+RGD VIL+
Sbjct: 61 DEETFEEIIKASEGDSSRMVPYLFVRGDGVILV 93
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R ++L+G ++AFD HCN+VL + E + G+ KS
Sbjct: 6 PLDLL--KLNLDERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQ---LESGELKS 60
Query: 80 KPVNKDRFISKMFLRGDSVILILKNP 105
N + +F+RGDSV LI P
Sbjct: 61 TEKNSE----MIFVRGDSVTLITTPP 82
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ + + K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEL 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL +E T + ++
Sbjct: 9 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 66
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R IS +F+RGD VIL+
Sbjct: 67 YRTTK-RNISMLFVRGDGVILV 87
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Takifugu
rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEL 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL + +E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYEEV 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 74 YKTTK-RTIPMLFVRGDGVILV 94
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 15/78 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE-------HPRAGKGKKKSKPVN 83
+ ++ + RN ++L GR+ A+D+H NM+L +V+E T + K K+S P+
Sbjct: 71 DEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTKRSIPM- 129
Query: 84 KDRFISKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 130 -------LFVRGDGVILV 140
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1 [Pan
troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Loxodonta
africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 171 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 228
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 229 YKTTK-RTIPMLFVRGDGVILV 249
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEL 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL I+ S+ H +VL+ N+K+ G++ FD NMVLE+V+E+ ++
Sbjct: 4 PLEIIDKSIGHEIRVLMT--NDKEFTGKLVGFDDFVNMVLEDVREIDSD----------- 50
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
V D+ I KM L G V +I+
Sbjct: 51 --VKSDKVIKKMLLNGGQVAMII 71
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS 421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS 421]
Length = 85
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + QV + R + L+G ++AFD HCN+VL + E T + +G +S
Sbjct: 6 PLDLL--KLNLDEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIE--TIYELDDEGDLQS 61
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
N + +F+RGD+V LI
Sbjct: 62 VERNSE----MIFVRGDTVTLI 79
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 1 QQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 58
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD V+L+
Sbjct: 59 EIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 89
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGK 76
A PL ++ S+ + ++ + RN ++L GR+ A+D+H NM+L +V+E T +
Sbjct: 14 AEEPLDLIRLSL--DERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTVEIDEETF 71
Query: 77 KKSKPVNKDRFISKMFLRGDSVILI 101
++ K R I +F+RGD VIL+
Sbjct: 72 EEIYKSTK-RNIPMLFVRGDGVILV 95
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V E + + K ++K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGETLKTIHKKS--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NM+L V+E T + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYEEV 76
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila ATCC
42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila ATCC
42464]
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E T + + + K V+K +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEE--TIYVVDDEDDEDVKTVSKKS--EMLFV 81
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 82 RGDSVVLI 89
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Cucumis sativus]
Length = 101
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQV--LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
EEES PL ++ S+ V L R++++L G++ A+D+H NM+L +V+E T
Sbjct: 4 EEESTVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESVTTV 63
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ ++ R + +F+RGD VIL+
Sbjct: 64 EIDDETYEEIVRTSR-RTVPFLFVRGDGVILV 94
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 10 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 67
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 68 YKSTK-RNIPMLFVRGDGVVLV 88
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL 8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL 8126]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E + K + V+K +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEVKLQTVSKKS--EMLFV 83
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 84 RGDSVVLI 91
>gi|380030070|ref|XP_003698681.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Apis
florea]
Length = 224
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH----- 69
GPL +L + +++ T++ + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 112 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWTRKVKRKA 171
Query: 70 -----------------PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
P+ K + K +R + +M LRG+ V +I+K
Sbjct: 172 PALGIPSGVNTIDEETAPKVIVKKIEGKMETLERHVPQMLLRGEQVAIIVK 222
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ +V++ R +++L G + A+D H NM+L +V+E +G K S V K R I
Sbjct: 19 SERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKPSIRVAK-RQIEM 77
Query: 91 MFLRGDSVILI 101
+++RGD VIL+
Sbjct: 78 LYVRGDGVILV 88
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++ + RN ++L GR+ A+D+H NMVL +V+E T + ++ ++ R I
Sbjct: 26 DERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEVYKTSR-RSIPM 84
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 85 LFVRGDGVILV 95
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 82 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 139
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 140 YKTTK-RTIPMLFVRGDGVILV 160
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N ++ + ++ ++L+G+ AFDRH N VL + +E P+ G GK++ +D R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDRRTLG 73
Query: 90 KMFLRGDSVI 99
+ LRG+ V+
Sbjct: 74 LILLRGEEVV 83
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
EE PL ++ S+ + ++ + R +++L G++ A+D+H NM+L +V+E
Sbjct: 5 EEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIK---VV 59
Query: 73 GKGKKKSKPV--NKDRFISKMFLRGDSVILI 101
K ++ + + N R I +F+RGD VILI
Sbjct: 60 EKDEETDEEIIRNIKRNIKMLFIRGDGVILI 90
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 23 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 80
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD V+L+
Sbjct: 81 YKSTK-RNIPMLFVRGDGVVLV 101
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S++ ++ + RN ++L G++ AFD+H NMVL +V+E+ + +
Sbjct: 16 PLDLIKLSLEE--RIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEE 72
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 73 IYRQKKRTIQMLFVRGDGVILV 94
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 7 PKQQEEEESFAT--GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
P+ + E S T P+ ++ SV + ++ + R++++L GR+ AFD+H NMVL +E
Sbjct: 6 PEGETEPVSLVTIKEPVDLIRLSV--DERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEE 63
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T + ++ K R I +F+RGD VIL+
Sbjct: 64 TITTIEVDEETFEEVYKTTK-RTIPMLFVRGDGVILV 99
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ R +++ GR++ +D HCNMVL + E + G+ + V K + F+
Sbjct: 25 VLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIYD---LGEEVNSNPTVKKSEMV---FV 78
Query: 94 RGDSVILILKNPL 106
RGDSVILI NP+
Sbjct: 79 RGDSVILI--NPI 89
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++ K R I
Sbjct: 26 DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPM 84
Query: 91 MFLRGDSVILI 101
+F+RGD V+L+
Sbjct: 85 LFVRGDGVVLV 95
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 8 KQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
+ E FA PL +L S++ +L+ +NN + G + +FD H N++L N +E T
Sbjct: 42 RASPEYTEFA-NPLYLLKTSLEDRITILL--QNNSSVTGLLASFDEHMNIILINAEE--T 96
Query: 68 EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
HP +RF +F+RGDS+I + +
Sbjct: 97 GHP-------------LNRFFPLLFIRGDSIIFVTR 119
>gi|328777216|ref|XP_001120196.2| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Apis
mellifera]
Length = 224
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH----- 69
GPL +L + +++ T++ + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 112 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWTRKVKRKA 171
Query: 70 -----------------PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
P+ K + K +R + +M LRG+ V +I+K
Sbjct: 172 PALGIPSDVSMMDEETAPKVIVRKIEGKMETLERHVPQMLLRGEQVAIIVK 222
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ + + K +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEILRTIKKQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 17/82 (20%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P+ ++ S+ N + I R +KL G+++AFD+H N++L +V E + E K ++
Sbjct: 30 PIDLIKLSLDDN--IFIKLRGGRKLKGKLRAFDQHLNIILTDVNETYQE-------KTRT 80
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
PV +++RGD V+LI
Sbjct: 81 FPV--------LYVRGDLVVLI 94
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D+H NM+L V E T + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEEV 76
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 11 EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
+E + A P + + + V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 3 DEADDMAPAPEPLDLVKLLLDEPVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYITD 62
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+ + + + R +F+RGDSV+LI P
Sbjct: 63 EDDEDESEQEVRTVSRKSEMLFVRGDSVVLISPVP 97
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
EE PL ++ S+ + ++ + R +++L G++ A+D+H NM+L +V+E
Sbjct: 5 EEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIK---VV 59
Query: 73 GKGKKKSKPV--NKDRFISKMFLRGDSVILI 101
K ++ + + N R I +F+RGD VILI
Sbjct: 60 EKDEETDEEIIRNIKRNIKMLFVRGDGVILI 90
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL + +E T + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEV 73
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
NK R I +F+RGD VIL+
Sbjct: 74 YRTNK-RNIPMLFVRGDGVILV 94
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum aestivum]
Length = 98
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
+EE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 5 DEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ + R I +F+RGD VIL+
Sbjct: 63 DDETYEEIVRTTR-RAIPFLFVRGDGVILV 91
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + C+ ++++ G++ A+D H NM+L N E + + + K +R + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVKKI---ERNLDMVF 77
Query: 93 LRGDSVILI 101
+RGDS+IL+
Sbjct: 78 VRGDSIILV 86
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ V + R +++L GR+ A+D HCN+VL +V+E ++ + + K
Sbjct: 24 DETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQE--EM 81
Query: 91 MFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 82 LFVRGDSVVLI 92
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|255075507|ref|XP_002501428.1| predicted protein [Micromonas sp. RCC299]
gi|226516692|gb|ACO62686.1| predicted protein [Micromonas sp. RCC299]
Length = 573
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLG----RVKAFDRHCNMVLENVKEMWT------- 67
GPLS+L + ++ + R+ + G +KAFD + NMVL++V E +T
Sbjct: 342 GPLSVLVKAFDEGRRIRVATRHRSGIRGVAVAYLKAFDVYMNMVLQDVHEAYTVRLRHSV 401
Query: 68 -EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ R G+ + K K ++ R ++++FLRG+ V+ I
Sbjct: 402 VDPKRPGRTRVKYKLEHRRRHMNQVFLRGEQVVTI 436
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS 2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS 2517]
Length = 85
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + V + R + L G ++AFD HCN+VL + E T + G G+ S
Sbjct: 5 PLDLL--KLNLDETVYVKLRGARALTGTLQAFDSHCNIVLSDAVE--TIYELDGNGELSS 60
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K K I F+RGDSV LI
Sbjct: 61 KE-KKSEMI---FVRGDSVTLI 78
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 14 ESFATGPLSILTDSVKHNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E A G +S D VK + +V I R ++ L G + A+D H N+VL V+E
Sbjct: 2 EQVAAGTISEPLDLVKLSLGERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEE-NIHIVD 60
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVIL 100
G+ + P + R +F+RGDSVIL
Sbjct: 61 VGEDGTAAPPRIERRGFEMLFIRGDSVIL 89
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 17/109 (15%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMWT-- 67
E GPL +L + ++V + R+ + + G + AFD+H N+VL +V+E +T
Sbjct: 103 ERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQYTVL 162
Query: 68 ------EHPRAG-KGKKKSKPV----NKDRFISKMFLRGDSVILILKNP 105
+ P G G ++++ V ++ R + ++F+RGDSV+L+ P
Sbjct: 163 LQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGDSVVLVSAGP 211
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ V + R +++L GR+ A+D HCN+VL +V+E ++ + + K
Sbjct: 24 DETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQE--EM 81
Query: 91 MFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 82 LFVRGDSVVLI 92
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
E+ PL ++ S+ + ++ + + N++L G + AFD H NM+L NV+E T
Sbjct: 11 EQPVLVEEPLDLIRLSL--DEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLEI 68
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 69 DEETYEEVYKTTK-RTIPMLFIRGDGVILV 97
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S+ + +V + R ++++ G++ A+D+H NM+L +V+E T
Sbjct: 3 EEDTTVKEPLDLIRLSL--DERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEI 60
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD+V L+
Sbjct: 61 DDETYEEIVKTTK-RAVRYLFVRGDAVTLV 89
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN++++ GR+ AFD+H NM+L V+E T + ++
Sbjct: 51 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 108
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD++IL+
Sbjct: 109 HKQTK-RQIPMLFVRGDAIILV 129
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+ E+ PL ++ S+ + ++ + + N++L G + AFD H NM+L NV+E T
Sbjct: 11 EAEQPVLVEEPLDLIRLSL--DEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTL 68
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+RGD VIL+
Sbjct: 69 EIDEETYEEVYKTTK-RTIPMLFIRGDGVILV 99
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
+E + EE T PL ++ S+ + ++ + R +++L G++ A+D+H NMVL V+E
Sbjct: 6 QEQRHMAEETVQTTEPLDLVRLSL--DERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEE 63
Query: 65 MWT-EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T H + ++ S+ V K+ +F+RGD VIL+
Sbjct: 64 SITVVHLDENEDEESSEIVTKN--YEMLFVRGDGVILV 99
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + R ++L GR+ AFD+H NMVL + +E T + ++
Sbjct: 15 PLDLIRLSL--DEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 73 YKTTK-RTIPMLFVRGDGVILV 93
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S++ ++ + RN ++L G++ AFD+H NMVL +V+E+ + +
Sbjct: 43 PLDLIKLSLEE--RIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEE 99
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 100 IYRQKKRTIQMLFVRGDGVILV 121
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT----EHPRAGKG 75
PL ++ S+ + ++ + RN++++ GR+ AFD+H NM+L V+E T + +
Sbjct: 51 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 108
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K++K R I +F+RGD++IL+
Sbjct: 109 HKQTK-----RQIPMLFVRGDAIILV 129
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + R ++L GR+ A+D+H NM+L V+E T + ++
Sbjct: 13 PLDLIRLSL--DERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEI 70
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 71 IKTQK-RVIPFLFVRGDGVILV 91
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M+ + QQEE PL ++ + + VL+ R +++ G+++ +D HCNMVL
Sbjct: 43 MSNIQTGAQQEE-------PLDLIRYQL--DESVLVKLRGAREMKGKLQGYDSHCNMVLS 93
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ +E KK++ V F+RGDSVILI
Sbjct: 94 DAQETIYGENEEDTVVKKTEMV---------FVRGDSVILI 125
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
+ + C+N ++L+GR++AFD HCNMVL V E T
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETIT 55
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member [Tribolium
castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++ + RN++++ GR+ A+D+H NM+L + +E T + ++ K R I
Sbjct: 25 DERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEVYRTTK-RNIPM 83
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 84 LFVRGDGVILV 94
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKK 78
PL ++ S++ +VL+ R +++L G + A+D+H NMVL NV E + T G++
Sbjct: 9 PLDLVRLSLEE--KVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGEEL 66
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
K R + +++RGD VIL+
Sbjct: 67 VK--TAKRVLPMLYVRGDGVILV 87
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R +KL G ++AFD HCN+VL + +E E G + ++
Sbjct: 5 PLDLL--RLNLDEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIYELVD-GNLRFET 61
Query: 80 KPVNKDRFISKM-FLRGDSVILILKNP 105
K S+M F+RGDSV L+ P
Sbjct: 62 KT-------SEMIFVRGDSVTLVTAQP 81
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK-GKKKSKPVNKDRFIS 89
+ ++L+ R +++L G+++AFD+H N+VL +V+E + + G++ K V R +
Sbjct: 14 DEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEELIKAVK--RKMP 71
Query: 90 KMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 72 MLFVRGDGVILV 83
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI R +++ G+++ +D HCNMVL +E KK++ V F+
Sbjct: 19 VLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVETKKTEMV---------FV 69
Query: 94 RGDSVILI 101
RGDSVILI
Sbjct: 70 RGDSVILI 77
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
P + + + VL+ R+ + + G +KA+DRH N+V E W E+ ++K
Sbjct: 49 SPYAFFDEVLALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERK 108
Query: 79 SKPVNKDRFISKMFLRGDSVILILKN 104
+ LRGD+VI+++ N
Sbjct: 109 N-----------FMLRGDNVIMVVSN 123
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + CR +++L G++ +D+H NM+L +V+E T + +
Sbjct: 4 PLDLIRLSI--DERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTS-TEIDEETDEQ 60
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ R + +F+RGD V+L+
Sbjct: 61 IVKKQTRKVGMLFVRGDIVVLV 82
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 36 INCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 95
+ CR +++L G + A+D H NMVL NVKE ++ + + + R I +FLRG
Sbjct: 31 VKCRGDRELEGILYAYDPHMNMVLGNVKE-TSQKITIDEVTGEESTMKVTRRIEMLFLRG 89
Query: 96 DSVILI 101
D VIL+
Sbjct: 90 DLVILV 95
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + ++
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 77 VRTTK-RTIPFLFVRGDGVILV 97
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + R ++L GR+ A+D+H NM+L V+E T + ++
Sbjct: 13 PLDLIRLSL--DERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEI 70
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD +IL+
Sbjct: 71 IKTQK-RVIPFLFVRGDGIILV 91
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 28 VKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE-HPRAGKGKKKSKPVNKDR 86
V + +V + C+ ++++G++ A+D HCNM+L + E +T ++ + +KD
Sbjct: 11 VNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEVTTITSKDS 70
Query: 87 FISKMFLRGDSVILI 101
+ +F+RGD++IL+
Sbjct: 71 GV--VFVRGDALILL 83
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 99
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 14 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 71
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F++GD V+L+
Sbjct: 72 YKSTK-RNIPMLFVQGDGVVLV 92
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 12 EEESFATGPLSI---LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWT 67
EE + + PL + L D V V + R +++L GR+ A+D HCN+VL +V+E ++
Sbjct: 6 EENTHVSEPLDLVKLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYV 60
Query: 68 EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ + K+ R +F+RGDSV+LI
Sbjct: 61 VDEDDDEEEAKTIS----RKSEMLFVRGDSVVLI 90
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMWTEHPR 71
F GPLS+L +++ +++ + R + G + AFD+H N++L +V+E +
Sbjct: 162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221
Query: 72 AGKGKKKSKPVNK--DRFISKMFLRGDSVILIL 102
+ +++P+ R+ ++F++GD+V+ ++
Sbjct: 222 LPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
+EE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 DEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 85
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ + R I +F+RGD VIL+
Sbjct: 86 DDETYEEIVRTTR-RTIPFLFVRGDGVILV 114
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D H N VL + +E+ T K K+ + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EXLFV 80
Query: 94 RGDSVILI 101
RGDSVILI
Sbjct: 81 RGDSVILI 88
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P +++ VL+ R+ + + G +KA+DRH N+V E W E+ ++K+
Sbjct: 9 PYMFFDEALALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKN 68
Query: 80 KPVNKDRFISKMFLRGDSVILILKN 104
LRGD+VI+++ N
Sbjct: 69 -----------FMLRGDNVIMVVSN 82
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 16/79 (20%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
IL DS+ + VL+ + ++ GR+K++D+H N+VLE+ +E++ +
Sbjct: 8 ILGDSI--GSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYED-------------- 51
Query: 83 NKDRFISKMFLRGDSVILI 101
+ R + + +RGD+V+LI
Sbjct: 52 GRTRKLGTIVIRGDTVLLI 70
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN ++L GR+ A+D++ NM+L V+E T + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYEEV 76
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + ++
Sbjct: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 72 YKTTK-RSIPMLFVRGDGVILV 92
>gi|307169174|gb|EFN61990.1| U7 snRNA-associated Sm-like protein LSm11 [Camponotus floridanus]
Length = 116
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 24/109 (22%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT-----EH 69
GPL +L +++ ++ + RN + + G V+A FD+H N+ LE+ E+W+ +
Sbjct: 6 GPLGMLHGCMENKIRIRVYTRNARGIRGHVEAYVVAFDKHWNLALEDCYEVWSRKVKRKA 65
Query: 70 PRAGKGKKKSKPVNK---------------DRFISKMFLRGDSVILILK 103
P G K + N +R + +M LRG+ V +I+K
Sbjct: 66 PVLGADAVKVEAANGIPKTVIRKERKMETLERHVPQMLLRGEQVAIIVK 114
>gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana
CCMP526]
gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana
CCMP526]
Length = 162
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 2 ATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKL----LGRVKAFDRHCNM 57
A R P Q ES TGP +L + V++ R L GR++ FDRH N+
Sbjct: 71 AARGPPLLQVLAESLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNL 130
Query: 58 VLENVKEMWTEHPRAGKGKKK 78
VLE +E R G+GK +
Sbjct: 131 VLEEAEEALFV--RRGEGKDR 149
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + RN ++L GR+ AFD+H N+VL + +E T + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVEIDEETYEEV 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+RGD VIL+
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL V+E T + + V K+ +F+
Sbjct: 26 VFVKLRGDRELRGRLHAYDSHCNLVLGEVEE--TIYVVDEDDDDTIRTVKKNS--EMLFV 81
Query: 94 RGDSVILI 101
RGDSV++I
Sbjct: 82 RGDSVVII 89
>gi|383848568|ref|XP_003699921.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like
[Megachile rotundata]
Length = 225
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH----- 69
GPL +L ++ T++ + RN + G V+A FD+H N+ LE+ E+WT
Sbjct: 112 GPLGMLYGYMESRTRIKVYTRNAYGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKTKRKA 171
Query: 70 ------------------PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
P+ K + K +R + +M LRG+ V +I+K
Sbjct: 172 PARGGTQDVIVKQEDDAAPKVVVKKIEGKKETLERHVPQMLLRGEQVAIIVK 223
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ + NK++ G++K++D H N+VLE+ +E++ P + R + + +
Sbjct: 17 VLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELF--------------PDGQARKLGTVII 62
Query: 94 RGDSVILI 101
RGD+VI+I
Sbjct: 63 RGDNVIII 70
>gi|426334164|ref|XP_004028631.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Gorilla gorilla gorilla]
Length = 55
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 57 MVLENVKEMWTEHPRAGKGKKK---SKPVNKDRFISKMFLRGDSVI 99
MVL+NVKEM TE P+ KG K SKP NKDRFISK+FL DSVI
Sbjct: 1 MVLKNVKEMCTEVPKGDKGGKGKKKSKPANKDRFISKLFLSRDSVI 46
>gi|387593780|gb|EIJ88804.1| hypothetical protein NEQG_00623 [Nematocida parisii ERTm3]
gi|387595086|gb|EIJ92712.1| hypothetical protein NEPG_02403 [Nematocida parisii ERTm1]
Length = 91
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 28 VKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF 87
+K +V + + N++++G ++ D+H N++L + E T+ P KGKK+ R
Sbjct: 14 LKSGDKVCVTVKGNREVVGTMELTDKHMNVLLRDAVETRTQLPSMLKGKKRQIKKVFTRT 73
Query: 88 ISKMFLRGDSVILI 101
+ +F+RG++VI I
Sbjct: 74 LGNVFIRGETVIAI 87
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R+ ++L+G ++AFD HCN+VL + KE E +G K+
Sbjct: 5 PLDLL--KLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGDLKT 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+RF +F+RG V L+
Sbjct: 60 ----TERFSEMIFVRGGLVALV 77
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ + NK++ G +K++D+H N+VL + +E+ ++ G GKK I + +
Sbjct: 17 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GSGKK----------IGTIVI 62
Query: 94 RGDSVILI 101
RGD+VILI
Sbjct: 63 RGDNVILI 70
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R +++ G ++AFD HCN+VL N E E G+ KS
Sbjct: 4 PLDLL--KLNLDEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYELV---DGELKS 58
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +F+RGDSV LI
Sbjct: 59 STKGSEM----VFVRGDSVTLI 76
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 121
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAG---KGKKKSKPVNKD 85
N +V + R +++L G + A+D H NM++ +V+E M + P G G K V K
Sbjct: 20 NERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGVLLPGAGSIK-VAKR 78
Query: 86 RFISKMFLRGDSVILI 101
R + +F+RGD VIL+
Sbjct: 79 R-LEMLFVRGDGVILV 93
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 16/81 (19%)
Query: 21 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSK 80
L IL+ SV + VL+ RN K L G +K +D+H N+VLE+ E+ E+ +
Sbjct: 7 LKILSKSV--GSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDENTQ--------- 55
Query: 81 PVNKDRFISKMFLRGDSVILI 101
NK + + +RGDS+++I
Sbjct: 56 --NK---LGTIVVRGDSIVMI 71
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDEENDEEVKTISRKSEM---LFV 82
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 83 RGDSVVLI 90
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++ + RN ++L G++ A+D+H NMVL + +E T + ++ K R I
Sbjct: 25 DERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTTK-RTIPM 83
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 84 LFVRGDGVILV 94
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nomascus
leucogenys]
Length = 102
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIETDEETYEEI 74
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R I +F+ GD V+L+
Sbjct: 75 YKSTK-RNIPMLFVWGDGVVLV 95
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
+E PL ++ S+ + ++ + R +++L G++ A+D+H NM+L +V+E
Sbjct: 5 DEGTIEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIR---VV 59
Query: 73 GKGKKKSKPVNKD--RFISKMFLRGDSVILI 101
K ++ + + K R I +F+RGD VILI
Sbjct: 60 EKDEETDEEIVKSIKRKIKMLFVRGDGVILI 90
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M + P + + V K R +
Sbjct: 21 RVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGAPESQGTVNVAK-RKMGM 79
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 80 LFVRGDGVILV 90
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ Q+ I RNN +L G + ++D H NM++ +E T K K+K
Sbjct: 7 PLDVLKFSIAQ--QIYIKMRNNIELKGTLVSYDNHLNMIISKAEE--TSFQEGIKTKRK- 61
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ ++LRGD +ILI
Sbjct: 62 --------LDALYLRGDGIILI 75
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 9 QQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT- 67
Q++ + PL ++ S+ N ++ + RN+++L R+ A+D+H NM+ +V+E T
Sbjct: 6 HQQQTTNAVEKPLDLIRLSL--NKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTT 63
Query: 68 ------EHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ K K++ P+ +F+RGD V+L+
Sbjct: 64 IEIDEETYEEIYKSTKRNIPM--------LFVRGDGVVLV 95
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R +KL G ++AFD HCN+VL + +E + G+ KS
Sbjct: 5 PLDLL--RLNLDERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETIYQLI---DGELKS 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + + +F+RGDSV L+
Sbjct: 60 ETKSSE----MVFVRGDSVTLV 77
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N Q+ + R +++L+G + A+D H N++L NV E T + + K R +
Sbjct: 17 NEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLESTTRFVK-RSMPM 75
Query: 91 MFLRGDSVILILKN 104
+++RGD VILI N
Sbjct: 76 LYIRGDGVILISPN 89
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL V+E + K +++ +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADEDDLKTISRKS--EMLFV 83
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 84 RGDSVVLI 91
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EEES PL+++ S+ + ++ + R++++L G++ A+D+H N+VL +V+E+ T
Sbjct: 4 EEESAVKEPLNLIWLSL--DERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K R + +F+RGD VIL+
Sbjct: 62 DDLLFSFLLQTTK-RTVPFLFVRGDGVILV 90
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ S+ + +V + R +++ G++ A+D+H NM+L +V+E T
Sbjct: 3 EEDTTVKEPLDLIRLSL--DERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEI 60
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD+V L+
Sbjct: 61 DDETYEEIIKTTK-RAVRFLFVRGDAVTLV 89
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM 5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera sedula
DSM 5348]
Length = 75
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 16/79 (20%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +SV + VL+ + NK++ G +K++D+H N+VL + +E+ ++ G+GKK
Sbjct: 8 LLAESV--GSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GEGKK----- 56
Query: 83 NKDRFISKMFLRGDSVILI 101
+ + +RGD+VILI
Sbjct: 57 -----MGTIVIRGDNVILI 70
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE++ PL ++ ++ + +V + R +++ GR+ A+D+H NM+L +V+E+ T
Sbjct: 5 EEDAAVREPLDLIRLAL--DEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTET 62
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD+V L+
Sbjct: 63 DEETFEEFTKTTK-RSVPFLFIRGDAVTLV 91
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N V + R +++L G++ A+D HCN+VL V+E G + + + IS+
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETI-------YGVDEEDDEEEAKTISR 75
Query: 91 ----MFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 76 KSEMLFVRGDSVVLI 90
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKTNEERDERRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+V+ +V+E ++ + + + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIYVVEEDENEEEIIRTIKRQE--EMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 12 EEESFATGPLSI---LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 68
+E S PL + L D V V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 6 DETSHVQEPLDLVKLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 69 HPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K +F+RGDSV+LI
Sbjct: 61 VDEDEEDEEVKTISRKSEM---LFVRGDSVVLI 90
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
PL +L + + +V + R ++L G ++AFD HCN+VL + E E G+ K
Sbjct: 5 APLDLL--KLNLDERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYELV---DGELK 59
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
S + + +F+RGDSV LI
Sbjct: 60 STEKSSEM----VFVRGDSVTLI 78
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ RNNK + G +K FD H N+ LEN +++ E P I K+ L
Sbjct: 20 VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP---------------IGKVLL 64
Query: 94 RGDSVILI 101
RGD+++ I
Sbjct: 65 RGDNILAI 72
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL V+E + ++ K +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTISRKSEM---LFV 82
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 83 RGDSVVLI 90
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 51/84 (60%), Gaps = 12/84 (14%)
Query: 20 PLSILTDSVKHNTQVLINCRNNK--KLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P++++ ++ T++ I +N +L GR+ FD + N++L++V+E++ GKK
Sbjct: 12 PINVIFKYLQQRTKIQIWLYDNVDCRLEGRIIGFDEYMNVILDDVEEVFY-------GKK 64
Query: 78 KSKPVNKDRFISKMFLRGDSVILI 101
+S+P N + ++ L+GD++ LI
Sbjct: 65 QSQPRNS---LGRILLKGDNITLI 85
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHP 70
EE + PL ++ + N V + R +++L G++ A+D HCN+VL V+E ++T
Sbjct: 6 EESHHVSEPLDLV--RLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDE 63
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ K+ R +F+RGDSV+LI
Sbjct: 64 DDEDDEVKT----ISRKSEMLFVRGDSVVLI 90
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M +H + + K R +
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAPEGHATVNIAK-RKMEM 80
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 81 LFVRGDGVILV 91
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N VL+ + NK++ G ++++D+H N+VL + +E+ ++ G GKK +
Sbjct: 14 NNLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 59
Query: 91 MFLRGDSVILI 101
+ +RGD+VILI
Sbjct: 60 IVIRGDNVILI 70
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS 6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS 6284]
Length = 82
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
PL +L + + ++ + R ++L G ++AFD HCN+VL + E E G+ K
Sbjct: 5 APLDLL--KLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYELV---DGELK 59
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
S N + +F+RGDSV LI
Sbjct: 60 STERNSEM----LFVRGDSVTLI 78
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum CS3096]
Length = 96
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFIS 89
N V + R +++L G++ A+D HCN+VL V+E ++T + K+ R
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDDDELKT----ISRKSE 78
Query: 90 KMFLRGDSVILI 101
+F+RGDSV+LI
Sbjct: 79 MLFVRGDSVVLI 90
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis subvermispora
B]
Length = 97
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M + + + + K R I
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQNTVNIAK-RKIDM 80
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 81 LFVRGDGVILV 91
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 39 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 98
RN+++L GR+ A+D+H NM+L +V+E T + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 99 ILI 101
+L+
Sbjct: 61 VLV 63
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS 4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS 4309]
Length = 84
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R + L G ++AFD HCN+VL + E E G KS
Sbjct: 6 PLDLL--KLNLDEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELE---DGDLKS 60
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+R +F+RGD+V LI
Sbjct: 61 ----TERQSEMIFVRGDTVTLI 78
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + +++ ++GR AFDRH N+VL + +E P+ G+ +++ ++ R +
Sbjct: 14 NYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEER---DQRRVLGL 70
Query: 91 MFLRGDSVI-LILKNP 105
+ LRGD VI L ++ P
Sbjct: 71 VLLRGDEVISLTVEGP 86
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 39 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 98
RN+++L GR+ A+D+H NM+L +V+E T + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 99 ILI 101
+L+
Sbjct: 61 VLV 63
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R + + G ++AFD HCN+VL + E E G+ KS
Sbjct: 6 PLDLL--KLNLDERVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETIYELV---DGELKS 60
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
++R +F+RGDSV LI
Sbjct: 61 ----QERASEMIFVRGDSVTLI 78
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ +++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKPAEGADREDRRTL 71
Query: 89 SKMFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 GLVLLRGEEVI 82
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N VL+ + NK++ G ++++D+H N+VL + +E+ ++ G GKK +
Sbjct: 14 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 59
Query: 91 MFLRGDSVILI 101
+ +RGD+VILI
Sbjct: 60 IVIRGDNVILI 70
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT--EHPRAGKGKKKSKPVNKDRFISK 90
+VLI R ++++ G + A+D H NMVL +V E T E P + + + V ++
Sbjct: 11 RVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIRIVKRN--CEM 68
Query: 91 MFLRGDSVILIL 102
+F+RGD V+L++
Sbjct: 69 LFVRGDGVVLVI 80
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS 4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS 4417]
Length = 85
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
S AT PL +L + + +V + R ++L+G ++AFD HCN VL + E +
Sbjct: 2 SLAT-PLDLL--KLNLDERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQLI---D 55
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNPL 106
G+ KS+ + + +F+RGD+V LI PL
Sbjct: 56 GELKSREKSSE----MIFVRGDTVALI-TTPL 82
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 10 QEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
Q++ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 7 QQQTTNTVEEPLDLIRLSL--DERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R I +F+ GD V+L+
Sbjct: 65 EIDEETYEEIYKSTK-RNIPMLFVWGDCVVLV 95
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 16/79 (20%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VL+ + NK++ G ++++D+H N+VL + +E+ ++ G GKK
Sbjct: 13 VLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----- 61
Query: 83 NKDRFISKMFLRGDSVILI 101
+ + +RGD+VILI
Sbjct: 62 -----LGTIVIRGDNVILI 75
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + R ++++G++ A+D HCN+VL + E + + K ++ KDR + ++
Sbjct: 132 KVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VY 185
Query: 93 LRGDSVILI 101
LRGDSVIL+
Sbjct: 186 LRGDSVILV 194
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + R ++++G++ A+D HCN+VL + E + + K ++ KDR ++
Sbjct: 17 KVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDR--PMVY 70
Query: 93 LRGDSVILI 101
LRGDSVIL+
Sbjct: 71 LRGDSVILV 79
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N VL+ + NK++ G ++++D+H N+VL + +E+ ++ G GKK +
Sbjct: 17 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 62
Query: 91 MFLRGDSVILI 101
+ +RGD+VILI
Sbjct: 63 IVIRGDNVILI 73
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT-------EHPRA 72
PL ++ S+ + ++ + RN+++L GR+ A+D++ NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEI 74
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K K++ P+ +F+RGD V+L+
Sbjct: 75 YKSMKRNIPM--------LFVRGDGVVLV 95
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V + R ++L+G ++AFD HCN+VL + E E G+ KS
Sbjct: 6 PLDLL--KLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYELV---DGELKS 60
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
++ +F+RGD+V LI
Sbjct: 61 ----NEKTSEMLFVRGDTVTLI 78
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M + P G +S R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPE-GVPPSQSVVNMAKRKVPM 80
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 81 LFVRGDGVILV 91
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + + + L G + A+D H NM++ +V+E + E +G + K R +
Sbjct: 22 RVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQTMK-----RAMEM 76
Query: 91 MFLRGDSVILI 101
+F+RGDSVIL+
Sbjct: 77 LFVRGDSVILV 87
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 2 ATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61
+ + E KQQ+E PL ++ + + V++ R ++ G+++ +D HCN+VL +
Sbjct: 3 SVQTEHKQQQE-------PLDLI--RFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSD 53
Query: 62 VKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
E K +P+ K +F+RGDSVILI
Sbjct: 54 ATETIF------SDKDGVEPIIKRT--EMVFVRGDSVILI 85
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT-------EHPRA 72
PL ++ S+ + ++ + RN+++L GR+ A+D++ NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEI 74
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K K++ P+ +F RGD V+L+
Sbjct: 75 YKSMKRNIPM--------LFFRGDGVVLV 95
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + R ++L G++ A+D+H NMVL +V+E T + ++
Sbjct: 18 PLDLIRLSL--DDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEI 75
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R + +F+RGD VIL+
Sbjct: 76 IKRRK-RTVEMLFVRGDGVILV 96
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ +V + R ++++ GR+ A+D H NMVL +V+E + + K +
Sbjct: 25 DERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVY---IVDIDETEEHISTKKKHSEM 81
Query: 91 MFLRGDSVILI 101
+F+RGDSVILI
Sbjct: 82 IFVRGDSVILI 92
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKG 75
T P ++ S+ +V + R +++L G + A+D H N++L +V+E ++ G
Sbjct: 22 VTEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 79
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K+ + V + +F+RGDSVIL+
Sbjct: 80 KETVRVVKRQS--EMLFVRGDSVILV 103
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ R N++L G+++AFD+H N+VL V E + R PV +++
Sbjct: 21 VLVKLRGNRQLKGKLRAFDQHLNLVLTEVTETYNSVSR-------DFPV--------LYI 65
Query: 94 RGDSVILI 101
RGD V+++
Sbjct: 66 RGDLVVIV 73
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 16/75 (21%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
QVLI ++N L G++++FD+H N+VL++ +E+ + R + +
Sbjct: 16 QVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTVV 61
Query: 93 LRGDSVILILKNPLA 107
+RGD+V+LI +PL
Sbjct: 62 IRGDTVVLI--SPLG 74
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISK 90
+V + R +++L G + A+D H N++L +V+E M + K + V K R +
Sbjct: 22 RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPEGKGTVNVAK-RKMEM 80
Query: 91 MFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 81 LFVRGDGVILV 91
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNNEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNNEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E + + P A KK S+ + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL I+ SV + +VL+ ++K+ G++ FD + NMVLE+V E+ E KS
Sbjct: 12 PLEIIDKSVGNKVKVLMT--SDKEFYGKLIGFDDYVNMVLEDVVEIDNE-------GTKS 62
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPLA 107
PV KM L G V +I+ + +A
Sbjct: 63 DPV------KKMLLNGGHVAMIIPDVVA 84
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 19/101 (18%)
Query: 2 ATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61
+ + E KQQ+E PL ++ + + V++ R ++ G+++ +D HCN+VL +
Sbjct: 3 SVQTEHKQQQE-------PLDLI--RFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSD 53
Query: 62 VKE-MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
E ++++ K+++ V F+RGDSVILI
Sbjct: 54 ATETIFSDKDGVDPIIKRTEMV---------FVRGDSVILI 85
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNNEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNNEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK----DRFI 88
+V I R ++++ G + A+D+H NM+L V+E T + ++PV R I
Sbjct: 24 RVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTI---VDLDESAAQPVGTLRQVKRQI 80
Query: 89 SKMFLRGDSVILI 101
+F+RGDSV+L+
Sbjct: 81 DCLFVRGDSVVLL 93
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK + +D R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKTTDGDREDRRTLG 71
Query: 90 KMFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 LVLLRGEEVI 81
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNNEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 19 GPLSILTDSVKHNTQVLINCRN----NKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
GP +L +++ V + R +G +KAFDRH N+VL + E T P +
Sbjct: 154 GPHGVLWRALRDRAAVKVVLRRVNCIRGSCVGLLKAFDRHMNLVLVDAAET-TVPPM--R 210
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+++PV RF+ ++ +RGD+V+L+ + P
Sbjct: 211 NPDRARPVT--RFLKQVLIRGDNVVLVCRAP 239
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ +++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKPAEGGDREDRRTL 71
Query: 89 SKMFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 GLVLLRGEEVI 82
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S++ VL+ +NN + G + +FD H N++L N +E T H
Sbjct: 53 PLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEE--TGH---------- 98
Query: 80 KPVNKDRFISKMFLRGDSVILILK 103
+ +RF + +RGDS+I + +
Sbjct: 99 ---SLNRFFPLLVIRGDSIIFVTR 119
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + ++++GR AFDRH N+VL + +E P+ G ++ + + R +
Sbjct: 13 NYRMRVTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDRE---QRRVLGL 69
Query: 91 MFLRGDSVI-LILKNP 105
+ LRGD V+ L ++ P
Sbjct: 70 VILRGDEVVDLTIEGP 85
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKINEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P+ IL D V + VLI+ + +++ G ++ +D H N+VL+ +E+ +G+ +S
Sbjct: 10 PMDIL-DQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIV-------QGQAQS 61
Query: 80 KPVNKDRFISKMFLRGDSVILILKNP 105
I + +RGD+VI I NP
Sbjct: 62 --------IGTLIIRGDNVIYISPNP 79
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 78
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAG 73
E+ + PL +L + VL+ +N + G++ AFD H N+ LEN +E
Sbjct: 3 ENVLSRPLDLLNSA--KGKMVLVELKNGHAITGKLVAFDVHINVTLENAEE--------- 51
Query: 74 KGKKKSKPVNKDRFISKMFLRGDSVILI 101
KK + + K + +F+RGD++ILI
Sbjct: 52 --KKDADTLRK---LGNVFIRGDTIILI 74
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KG KK+K ++ R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPP--AKGSKKTKEDREERRTLG 71
Query: 90 KMFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 LVLLRGEEVI 81
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKINEEREDRRTLGL 71
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ + NK++ G +K++D+H N+VL + +E+ ++ G GKK + + +
Sbjct: 20 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GGGKK----------MGTIVI 65
Query: 94 RGDSVILI 101
RGD+VILI
Sbjct: 66 RGDNVILI 73
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL++L + + +V + R + + G ++AFD HCN+VL + E E G+ +
Sbjct: 5 PLNLL--KLNLDERVYVKLRGARSMAGTLQAFDSHCNIVLSDAVETRYELV-DGELRSTE 61
Query: 80 KPVNKDRFISKM-FLRGDSVILI 101
+P S+M F+RGDSV L+
Sbjct: 62 RP-------SEMVFVRGDSVTLV 77
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE---MWTEHPRAGKGKKKSKPVN-KDRFI 88
+V + R +++L G + A+D H N++L +V+E + + AG+G++ VN R +
Sbjct: 21 RVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQQT---VNMAKRKM 77
Query: 89 SKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 78 EMLFVRGDGVILV 90
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S++ VL+ +NN + G + +FD H N++L N +E T H
Sbjct: 59 PLYLLKTSLEDRISVLL--QNNSSITGLLASFDEHMNLILINAEE--TGH---------- 104
Query: 80 KPVNKDRFISKMFLRGDSVILILK 103
+ +RF + +RGDS+I + +
Sbjct: 105 ---SLNRFFPLLVIRGDSIIFVTR 125
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW----TEHPRAGKGKKKSKPVNKDRFI 88
+V + R +++L G + A+D H N+++ +V+E T+ G+G + +K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQGLQVAK-----RKM 76
Query: 89 SKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 77 EMLFVRGDGVILV 89
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + +V + R N+ L G++ A+D+H NMVL +V E T + +
Sbjct: 8 PLDLIRLSL--DERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITTS-EIDEESYEE 64
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+R + +++RGD VIL+
Sbjct: 65 IIKTTERKMPMLYVRGDGVILV 86
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFISKM 91
+V + R +++++G + A+D H N++L +V+E + P G + R ++ +
Sbjct: 22 RVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSPNSEGTVKVAKRKMNML 81
Query: 92 FLRGDSVILI 101
F+RGD VIL+
Sbjct: 82 FVRGDGVILV 91
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
Length = 72
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L D++ N+ V++ + ++ G ++ +D H N+VLEN +E+
Sbjct: 5 PLDVLNDAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLENAEEL-------------- 48
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + R + + +RGD+V+ +
Sbjct: 49 KENEESRKLGTIIVRGDTVVYV 70
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 97
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+VLI R ++ L G + A+D H NMVL +V E T A + R +F
Sbjct: 23 RVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANPDDEPIIRTVKRNCEMLF 82
Query: 93 LRGDSVILI 101
+RGD V+L+
Sbjct: 83 VRGDGVVLV 91
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + L G++ AFDRH N+VL +E P+ G+ ++ PV + R +
Sbjct: 6 NWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLG 65
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 66 LVILRGETVV 75
>gi|2833357|sp|Q29329.1|SMD2_PIG RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
Length = 50
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNK 42
F TGPLS+ T S K TQVLINCRN K
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E ++ K ++K +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETVYVVEEDEDEEETVKTIHKKS--EMLFV 83
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 84 RGDSVVLI 91
>gi|323447461|gb|EGB03380.1| hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens]
Length = 129
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKP-VNKDRFIS 89
+ +VLI R+ + L+G +++FD+ N+VLE+ E P +S+P V D +
Sbjct: 21 DKKVLIILRDGRNLVGVMRSFDQFSNVVLEDTYERRVVIP-----DDESQPAVYGDVPLG 75
Query: 90 KMFLRGDSVILI 101
+RGDSV+L+
Sbjct: 76 LYVIRGDSVVLL 87
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
EEES PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVT 57
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 19/82 (23%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L S+ NT VL+ ++ + + GR+KA+D H N+ LEN K G++K
Sbjct: 7 PLDALGKSI--NTNVLVKLKDGQTVKGRLKAYDLHLNVALENAKF---------DGEEKE 55
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
P+ + +RGD+V+ I
Sbjct: 56 YPL--------IVVRGDNVLFI 69
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 4 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 54
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +R +F+RGD+V LI
Sbjct: 55 ELSESERRCEMVFIRGDTVTLI 76
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKG 75
T P ++ S+ +V + R +++L G + A+D H N++L +V+E ++ G
Sbjct: 26 VTEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 83
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
+ + V + +F+RGDSVIL+
Sbjct: 84 AETVRVVKRQS--EMLFVRGDSVILV 107
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting Novel
Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting Novel
Octameric Ring Organisation
Length = 96
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 11 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 61
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +R +F+RGD+V LI
Sbjct: 62 ELSESERRCEMVFIRGDTVTLI 83
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL IL +S+ N+ V++ ++ + G ++ +D H N+VLEN TE G
Sbjct: 1 MAQRPLDILNESL--NSPVIVRLKDGRAFRGELQGYDIHMNLVLEN-----TEEIAEGTA 53
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
+K I + +RGD+V+ I
Sbjct: 54 RK----------IGAVIVRGDNVVYI 69
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFISKM 91
V + R +++L GR+ A+D HCN+VL +V E E G++ K V K +
Sbjct: 26 VYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDDGEEIVKTVVKKS--EML 83
Query: 92 FLRGDSVILI 101
F+RGDSVILI
Sbjct: 84 FVRGDSVILI 93
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 75
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ RNNK + G ++ FD H N+ LEN +++ E P + K+ L
Sbjct: 17 VLLRLRNNKTIQGVLQDFDIHMNLTLENAEDVSEEKPDP---------------LGKVLL 61
Query: 94 RGDSVILI 101
RGD+++ I
Sbjct: 62 RGDNILAI 69
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
P +L + QVLI +NN + G+V +FD H N+VL+N +E+ G+ K+
Sbjct: 6 PFDLLNRVISQ--QVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEEL------DANGELKA 57
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + + LRG ++I +
Sbjct: 58 K-------LGTILLRGGNIIFV 72
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQ--VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
E ++ AT P S D V+ + V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 3 EADAGATAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H NM+L + +E P+ K +++ K R +
Sbjct: 14 NYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVEREEK-----RVLGF 68
Query: 91 MFLRGDSVI 99
+ LRG+S++
Sbjct: 69 VLLRGESIV 77
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H NM+L + +E P+ K +++ K R +
Sbjct: 12 NYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVEREEK-----RVLGF 66
Query: 91 MFLRGDSVI 99
+ LRG+S++
Sbjct: 67 VLLRGESIV 75
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E G++ K + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETVKTIKKQE--EMLFV 85
Query: 94 RG 95
RG
Sbjct: 86 RG 87
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL +S+ N V++ ++ + G ++ +D H N+VL+N TE R G+ KK
Sbjct: 5 PLDILNESL--NGPVIVKLKDGRAFRGELQGYDIHMNLVLDN-----TEEIREGEDSKK- 56
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + +RGD+V+ I
Sbjct: 57 --------LGTVVVRGDNVVYI 70
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 4 PLDLL--KLNLDERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 54
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +R +F+RGD+V LI
Sbjct: 55 ELSESERRCEMVFVRGDTVTLI 76
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFISKM 91
+V + R +++L G + A+D H N++L +V+E ++ G + + V + +
Sbjct: 37 RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGSETVRVVKRQS--EML 94
Query: 92 FLRGDSVILI 101
F+RGDSVIL+
Sbjct: 95 FVRGDSVILV 104
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
VLI ++N L G++++FD+H N+VL++ +E+ + R + +
Sbjct: 16 HVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTIV 61
Query: 93 LRGDSVILILKNPLA 107
+RGD+V+LI +PL
Sbjct: 62 IRGDTVVLI--SPLG 74
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 4 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 54
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +R +F+RGD+V LI
Sbjct: 55 ELSESERRCEMVFVRGDTVTLI 76
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
EE AT +L +S+ N VL+ + + + G++K FD+ N+V+ + E+ +
Sbjct: 21 EEGIAT---QLLQESIGKN--VLVKLKGRRSVRGKIKGFDKQMNIVITDATEIIEQQ--- 72
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILI 101
G + K ++ + + +RGD+VI I
Sbjct: 73 GNNNSEKKEQEQESQVGEALIRGDNVITI 101
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 32 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKM 91
Q+ + + N K+ G+++ FD + NMVLE+V+E++ KK+ + R + +
Sbjct: 29 VQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYV--------KKQER-----RALGTI 75
Query: 92 FLRGDSVILILKNP 105
L+GD++ LI P
Sbjct: 76 LLKGDAMALITAAP 89
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 7 PKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66
P SF PL+++ V V++ R +++L+G ++ FD + NMVL++V E +
Sbjct: 9 PTATATGPSFL--PLALVDKCVGSRIWVIM--RGDRELVGTLRGFDDYVNMVLDDVTE-Y 63
Query: 67 TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104
T P GK K I + L G SV +++
Sbjct: 64 TILPDGGKRVDK---------IESILLNGSSVAMLVPG 92
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E P KGKK + + R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNEE-REERRTLGL 70
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 71 VLLRGEEVI 79
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E + + P A KK ++ + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M+T E ++ +E PL ++ S+ H +VL+ N K+ G + FD + N+VLE
Sbjct: 1 MSTTEHSEEAKEISIENILPLEVIDKSIGHKIRVLLT--NTKEFHGTLVGFDDYVNVVLE 58
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
NV+E + A GK + KM L G + +++
Sbjct: 59 NVEEFDGD---ASSGK----------IVKKMLLNGGQIAMLV 87
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ VL+ + +K + G +K++D H N+VLEN +E+ ++ R +
Sbjct: 18 GSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRKVGT 63
Query: 91 MFLRGDSVILI 101
+ +RGD+VIL+
Sbjct: 64 IIIRGDNVILV 74
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 126
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 4 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 54
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ +R +F+RGD+V LI
Sbjct: 55 ELSESERRCEMVFVRGDTVTLI 76
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 28 VKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDR 86
V + +V + R +++L G + A+D H NM+L V+E ++ G + V ++
Sbjct: 15 VSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASGDNVVRTVKRN- 73
Query: 87 FISKMFLRGDSVILI 101
+F+RGD V+L+
Sbjct: 74 -CDMLFVRGDGVVLV 87
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ ++L+G+ AFDRH N+VL + +E + + P A KK ++ + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV----------KEMWTEH 69
PL ++ S+ + ++ + RN ++L GR+ A+D+H NMVL V +E + E
Sbjct: 17 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTVEIDEETYEEV 74
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
R K R I +F+RGD VIL+
Sbjct: 75 YRTTK-----------RNIPMLFVRGDGVILV 95
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis
subvermispora B]
Length = 184
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + +G++ AFDRH N+VL +E P+ G+ ++ PV + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAGPVQEMKRTLG 75
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus mucosus
DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 18/85 (21%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
IL DS+ VLI +++ L G++++FD+H N+VL++ +E+ G G
Sbjct: 8 ILEDSI--GRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIR------GDGSV----- 54
Query: 83 NKDRFISKMFLRGDSVILILKNPLA 107
R + + +RGD+V+LI +PL+
Sbjct: 55 ---RKLGTVVIRGDTVVLI--SPLS 74
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++ + L G++ AFDRH N+VL + +E P+ G++ + R +
Sbjct: 6 NWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGL 65
Query: 91 MFLRGDSVILI 101
+ LRG++V+ I
Sbjct: 66 VILRGEAVVSI 76
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
PL ++ S+ + +V + RN+++L G++ A+D+H NMVL +V+E+ T
Sbjct: 13 PLDLMKFSL--DEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIIT 58
>gi|330805691|ref|XP_003290812.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
gi|325079022|gb|EGC32643.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
Length = 250
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMWTEHP- 70
F GP+S+L +++ +++ I R+ + G + AFD+H N++L +V+E +TE+
Sbjct: 155 FTDGPISLLRKALETKSRIKIIIRDISSIRGYCQGYLVAFDKHWNIILRDVEEEYTEYHF 214
Query: 71 -RAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
A + +K ++ ++ ++F++GD+++ ++
Sbjct: 215 LSAEEQEKTNRHQKIKKYYGQLFIKGDTIVSVI 247
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris
suum]
Length = 165
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++ +G +AFD+H N++L +E P+ G KKS P + R +
Sbjct: 14 NYRMRVALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPG---KKSAPEEEMRTLGL 70
Query: 91 MFLRGDSVI 99
+ LRG+ ++
Sbjct: 71 VLLRGEHIV 79
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL V+E ++ K + + +F+
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETVYVVEEDENEEEIIKTIKRQE--DMLFV 84
Query: 94 RGDSVILI 101
RGDSV+LI
Sbjct: 85 RGDSVVLI 92
>gi|406602048|emb|CCH46368.1| hypothetical protein BN7_5961 [Wickerhamomyces ciferrii]
Length = 77
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 43 KLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+LL +A+D HCN+VL + E + +G + K K+ I +F+RGDSVILI
Sbjct: 18 RLLLDEQAYDSHCNIVLSDAIETIYD---IEEGSDELKSTTKNSEI--LFVRGDSVILI 71
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + ++L+G++ AFDRH N+VL +E P+ G++ R +
Sbjct: 16 NWRIKVTINDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGL 75
Query: 91 MFLRGDSVI 99
+ LRG++V+
Sbjct: 76 VILRGETVV 84
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + L G++ AFDRH N+VL + +E P+ G+ ++ P + R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALG 75
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + + L G++ AFDRH N+VL + +E P+ G++ + R +
Sbjct: 6 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGL 65
Query: 91 MFLRGDSVI 99
+ LRG++V+
Sbjct: 66 VILRGETVV 74
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE-MWTEHPRAGKGKKKSKPVNKDRFISKM 91
+V + R +++L G + A+D H N++L +V+E ++ G + + V + +
Sbjct: 31 RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGHETVRVVKRQS--EML 88
Query: 92 FLRGDSVILI 101
F+RGDSVIL+
Sbjct: 89 FVRGDSVILV 98
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + L G++ AFDRH N+VL +E P+ G+ ++ P + R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLG 75
Query: 90 KMFLRGDSVILI 101
+ LRG++V+ I
Sbjct: 76 LVILRGETVVSI 87
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L +S+ N VL+ + NK+ G + +D+H N+VL+NV+E+ +S
Sbjct: 7 PLHVLHESL--NKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIIN---------GES 55
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K V+ + + +RGD+VI I
Sbjct: 56 KGVH-----NVVIVRGDNVIYI 72
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + +G++ AFDRH N+VL +E P+ G+ ++ P + R +
Sbjct: 6 NWRLKVTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLG 65
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 66 LVILRGETVV 75
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L +S+ N VL+ + NK+ G + +D+H N+VL+NV+E+ +S
Sbjct: 7 PLHVLHESL--NKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIIN---------GES 55
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K V+ + + +RGD+VI I
Sbjct: 56 KGVH-----NVVIVRGDNVIYI 72
>gi|303279124|ref|XP_003058855.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460015|gb|EEH57310.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 403
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
Query: 4 REEP--KQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGR----VKAFDRHCNM 57
R+ P K EE GP+ ++ + + V++ ++ + G VKAFD++ NM
Sbjct: 258 RKNPIVKTLAEECKAKGGPIMVIVKAYEERRVVMVTTKHKLGIRGHAFAYVKAFDKYMNM 317
Query: 58 VLENVKEMWT---EH-----PRAGKGKKKSKP--VNKDRFISKMFLRGDSVILI 101
+L++V+E++T +H + GK + K K ++R + ++FLRG+ ++ +
Sbjct: 318 LLQDVREIYTVRLKHRVEYVDKNGKTRYKIKHRLEGRERTMDQVFLRGEQIVTV 371
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + + L G++ AFDRH N+VL + +E P+ G++ + R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGL 75
Query: 91 MFLRGDSVILI 101
+ LRG++V+ I
Sbjct: 76 VILRGETVVSI 86
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW----TEHPRAGKGKKKSKPVNKDRFI 88
+V + R +++L G + A+D H N+++ +V+E T+ G+G + V K R +
Sbjct: 22 RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTGQGVLQ---VAK-RKM 77
Query: 89 SKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 78 EMLFVRGDGVILV 90
>gi|297618799|ref|YP_003706904.1| small nuclear riboprotein-like protein [Methanococcus voltae A3]
gi|297377776|gb|ADI35931.1| Like-Sm ribonucleoprotein core [Methanococcus voltae A3]
Length = 69
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
PL L S+ NT + + ++ K++ GR+KA+D H N+ LEN K E+P
Sbjct: 7 PLDALGKSI--NTNITVFLKDGKEIKGRLKAYDLHMNVALENAKFEEKEYP 55
>gi|440801773|gb|ELR22778.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 135
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
+F G +S L + V H ++L+ ++ +KLLG +++FD++ N+VLE E R
Sbjct: 13 TFLPGTVS-LVEEVDH--RILVVLQDGRKLLGVLRSFDQYANLVLEQTIE------RIYV 63
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILI 101
G++ + ++ + +RGD+++L+
Sbjct: 64 GEQYA-----EKNLGLFLVRGDNIVLL 85
>gi|448084481|ref|XP_004195616.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359377038|emb|CCE85421.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
M+T + ++ +E PL ++ S+ H +VL+ N K+ G + FD + N+VLE
Sbjct: 1 MSTTDHSEEAKEISIENILPLEVIDKSIGHKIRVLLT--NTKEFHGTLVGFDDYVNVVLE 58
Query: 61 NVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 102
NV+E + A GK + KM L G + +++
Sbjct: 59 NVEEFDGD---AASGK----------IVKKMLLNGGQIAMLV 87
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL V+E +G++ K K +F+
Sbjct: 27 VFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEETVKTTKKQS--DMLFV 84
Query: 94 RG 95
RG
Sbjct: 85 RG 86
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T
Sbjct: 11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 56
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 16 FATGPLSILTDSVKHNTQ--VLINCRNNKKLLGR---------VKAFDRHCNMVLENVKE 64
F GPL D ++ N + + + C+ +++L G + A+D H NM+L N KE
Sbjct: 10 FYKGPL----DYIRLNMEEEIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKE 65
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ + ++ K + +R + +F+RGDS+IL+
Sbjct: 66 KYKQ-VTIENNEECVKQI--ERNLDMVFVRGDSIILV 99
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L D++ N+ V++ + ++ G ++ +D H N+VL+N +E+ K ++S
Sbjct: 5 PLDVLNDAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL--------KENEES 54
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + + +RGD+V+ +
Sbjct: 55 KK------LGTIIVRGDTVVYV 70
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + +G++ AFDRH N+VL +E P+ G+ ++ P+ + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLG 75
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD---RF 87
N ++ + + + L+G + AFDRH N+VL + +E P+ G+ P + R
Sbjct: 16 NWRLKVTLNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRT 75
Query: 88 ISKMFLRGDSVI 99
+ + LRG++V+
Sbjct: 76 LGLVILRGETVV 87
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + +G++ AFDRH N+VL +E P+ G+ ++ P+ + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLG 75
Query: 90 KMFLRGDSVI 99
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 36 INC--RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
I C ++ + +G KAFD+H N++L E R + K + P + R + + L
Sbjct: 17 IRCILQDGRTFIGTFKAFDKHMNLILSECDEY-----RKYRTKGDAPPREEKRTLGFVLL 71
Query: 94 RGDSVILI 101
RGDSV+ +
Sbjct: 72 RGDSVVTV 79
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
PL ++ S+ + ++ + RN++++ GR+ AFD+H NM+L V+E T
Sbjct: 20 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVT 65
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera aggregans
DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI +++ L G+++++D+H N+VL++V+E+ G+G K + + +
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVEEI-------GEGGSTRK-------LGTVVI 62
Query: 94 RGDSVILI 101
RGD+V+ I
Sbjct: 63 RGDTVVFI 70
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEH----PRAGKGKKKSKPVN- 83
N +V + R +++L G + A+D H N++L +V+E M + P AG+ +N
Sbjct: 20 NERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIMLVDSNEAAPPAGR-------INV 72
Query: 84 KDRFISKMFLRGDSVILI 101
R + +F+RGD VIL+
Sbjct: 73 AKRKMDMLFVRGDGVILV 90
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
+ +V + R +++L G + A+D H NMVL V+E T ++ + V + R
Sbjct: 27 DERVYVKLRGDRELTGILHAYDGHLNMVLGEVEETIT---MVDVNEETLEEVIRTVKRTF 83
Query: 89 SKMFLRGDSVILI 101
+F+RGD VIL+
Sbjct: 84 EMLFVRGDGVILV 96
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + ++++GR AFDRH N+VL + +E P+ G +++ + R +
Sbjct: 14 NYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEERQ---VRRVLGF 70
Query: 91 MFLRGDSVI-LILKNP 105
+ LRG+ V+ L ++ P
Sbjct: 71 LLLRGEEVVSLTVEGP 86
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + R +++L GR+ A+D HCN+VL +V+E G++ K + K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLFV 85
Query: 94 RGDS 97
RG S
Sbjct: 86 RGTS 89
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
G + +L D V V + R +++L GR+ A+D HCN+VL +V+E T + + + +
Sbjct: 14 GLVRLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE--THYIQDEDDESE 66
Query: 79 SKPVNKDRF 87
K N D +
Sbjct: 67 LKVRNSDDY 75
>gi|320163467|gb|EFW40366.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 304
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRNNK----KLLGRVKAFDRHCNMVLENVKEM 65
E GPLS+L VK + + + R++K ++L V FD+H NMV+ +V+E+
Sbjct: 173 EELQIGPLSVLYRCVKEHYRARLWIRDDKGIRSQMLATVLVFDKHFNMVVTDVQEI 228
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ +G
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR-------EG 51
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
+ SK S + +RGD+V+ +
Sbjct: 52 EVVSK-------FSSVVIRGDNVVYV 70
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus marinus
F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI + +++ G++K++D+H N+VL++ +E+ K R + + +
Sbjct: 17 VLIKLKGEREVRGKLKSYDQHLNIVLDDAEEI--------------KEDGSTRKLGTIVI 62
Query: 94 RGDSVILI 101
RGD+VILI
Sbjct: 63 RGDTVILI 70
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE--MWTEHPRAGKGKKKSKPVNKDRFI 88
N +V + ++N++ +G AFDRH N+VL + +E M + P +PV R +
Sbjct: 12 NYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEEYRMIKKQP------SDKEPVEIKRTL 65
Query: 89 SKMFLRGDSVI 99
+ LRG++V+
Sbjct: 66 GFVLLRGENVV 76
>gi|42557773|emb|CAF28746.1| hypothetical protein [uncultured crenarchaeote]
Length = 89
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ + + + G++K FD+ N+V+ E+ + +K K ++ + +
Sbjct: 19 VLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQETQVGDALI 78
Query: 94 RGDSVILI 101
RGD+VI I
Sbjct: 79 RGDNVITI 86
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N V + + + + G +K+FD+H N+VLEN +E+ R+ +
Sbjct: 19 NASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEELTERGSRS---------------LGT 63
Query: 91 MFLRGDSVILI 101
+ +RGDS++ I
Sbjct: 64 VLVRGDSIVAI 74
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ I + ++++GR AFDRH N+VL + +E P+ G ++ + V R +
Sbjct: 14 NYRMRITIVDGRQIVGRFMAFDRHMNLVLSDAEEFRKLPPKKGL-TEEDRAVR--RVLGF 70
Query: 91 MFLRGDSVI 99
+ LRG+ V+
Sbjct: 71 ILLRGEEVV 79
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + K + G + FD+H N++L++ +E+ TE G KS
Sbjct: 9 VLDESI--NQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTE------GNSKS--- 57
Query: 83 NKDRFISKMFLRGDSVILILKNPLA 107
+ + +RGD+V++I P A
Sbjct: 58 -----LGTIVVRGDNVVMISPPPAA 77
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 36 INCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 95
+ + ++L+G+ AFD+H N+VL + E + GKG+++ + R + + LRG
Sbjct: 8 VTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEEREEK----RSLGLVILRG 63
Query: 96 DSVI 99
+SV+
Sbjct: 64 ESVV 67
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ R + + G++K+FD+H N+VLE +E+ ++ R + + +
Sbjct: 17 VLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSD--------------GSTRKLGTLVI 62
Query: 94 RGDSVILI 101
RGD+V+LI
Sbjct: 63 RGDNVVLI 70
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 7 PKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66
P+ E+++ PL ++ ++ + +V + R +++ GR+ A+D+H NM+L V+E
Sbjct: 390 PRAMAEDDAAVREPLDLIRLAL--DERVYVKLRGDREARGRLHAYDQHLNMILGEVEETI 447
Query: 67 TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T + ++ K R + +F+RGD+V L+
Sbjct: 448 TSTETDEETFEEFTKTTKRR-VPYLFIRGDAVTLV 481
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea okayama7#130]
Length = 95
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW----TEHPRAGKGKKKSKPVN-KDRF 87
+V + R ++++ G + A+D H N++L +V+E T+ P G+G VN R
Sbjct: 22 RVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPN-GQGV-----VNIAKRK 75
Query: 88 ISKMFLRGDSVILI 101
+ +F+RGD VIL+
Sbjct: 76 MDMLFVRGDGVILV 89
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
Length = 78
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 16/83 (19%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + NK + G + FD+H N++L++ +E+ E G KS
Sbjct: 9 VLDESI--NQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GDSKS--- 57
Query: 83 NKDRFISKMFLRGDSVILILKNP 105
+ + +RGD+V++I P
Sbjct: 58 -----LGSIVVRGDNVVMISPPP 75
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + +++ RN+K+++G + FD NMVLE+V TE+ GKK +
Sbjct: 7 PLELVDKCIGSRIHIIM--RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKKIT 60
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + ++ L G+++ +++
Sbjct: 61 K-------LEQILLNGNNITMLV 76
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|241959080|ref|XP_002422259.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
gi|223645604|emb|CAX40263.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
Length = 125
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 35 LINCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS---KPVNKD 85
LIN R +N+ LG + +FD+H N+VL + +E + KK + +PV +
Sbjct: 19 LINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYEK 78
Query: 86 RFISKMFLRGDSVI 99
R + + LRGD V+
Sbjct: 79 RNLGLIILRGDQVV 92
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 78
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + NK + G + FD+H N++L++ +E+ E G G
Sbjct: 9 VLDESI--NQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGDSKGLG------- 59
Query: 83 NKDRFISKMFLRGDSVILILKNP 105
+ +RGD+V++I P
Sbjct: 60 -------TIVVRGDNVVMISPPP 75
>gi|307208061|gb|EFN85592.1| hypothetical protein EAI_15110 [Harpegnathos saltator]
Length = 96
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 36 INCRNNKKLLGRVKA----FDRHCNMVLENVKEMWTEH---------------------P 70
+ RN + + G V+A FD+H N+ LE+ E+W+ P
Sbjct: 2 VYTRNARNIRGYVEAYVVAFDKHWNLALEDCDEIWSRKVKRKAPAFGADAVKVEAPPNVP 61
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
+A K + K +R + +M LRG+ V +I+K
Sbjct: 62 KATVTKIEGKMETLERHVRQMLLRGEQVAIIIK 94
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + +++ RN+K+++G + FD NMVLE+V TE+ GKK +
Sbjct: 7 PLELVDKCIGSRIHIIM--RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKKIT 60
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + ++ L G+++ +++
Sbjct: 61 K-------LEQILLNGNNITMLV 76
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + NK + G + FD+H N++L++ +E+ E G G
Sbjct: 9 VLDESI--NQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLG------- 59
Query: 83 NKDRFISKMFLRGDSVILILKNP 105
+ +RGD+V++I P
Sbjct: 60 -------SIVVRGDNVVMISPPP 75
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ R G+
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEV 53
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K S + +RGD+V+ +
Sbjct: 54 VSK---------FSSVVIRGDNVVYV 70
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ VL+ + K + G +K++D H N+VLEN +E+ + R +
Sbjct: 14 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGT 59
Query: 91 MFLRGDSVILI 101
+ +RGD+VIL+
Sbjct: 60 IVIRGDNVILV 70
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella moellendorffii]
Length = 97
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 71
EE+ PL ++ S+ + ++ + R +++L G++ A+D+H NM+L V+E+ T
Sbjct: 4 EEDGAVKEPLDLIRLSL--DERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTEI 61
Query: 72 AGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ ++ K R + +F+RGD VIL+
Sbjct: 62 DDETYEEIVKTTK-RQVPYLFVRGDGVILV 90
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL D++ NT V++ + ++ G ++ +D H N+VL+ +E+ K
Sbjct: 5 PLDILNDAL--NTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEEL-----------KDG 51
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ V K I + +RGD+V+ +
Sbjct: 52 EIVRK---IGGVVIRGDNVVYV 70
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ + + + +G++ AFDRH N+V+ +E P+ G+ ++ P + R +
Sbjct: 16 NWRLKVTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRTLG 75
Query: 90 KMFLRGDSVILI 101
+ LRG++V+ I
Sbjct: 76 LVILRGETVVSI 87
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ N+QVLI + ++ G + +FD H N+VL + +E+ +
Sbjct: 12 PLDVLGKSL--NSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGE---------- 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
R + + +RGD+++ I
Sbjct: 60 ----SSRRLGVVLIRGDNIVYI 77
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 16/79 (20%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +SV + VL+ + NK++ G +K++D+H N+VL + E+
Sbjct: 8 LLAESV--GSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNN-------------- 51
Query: 83 NKDRFISKMFLRGDSVILI 101
N ++ + + +RGD+VILI
Sbjct: 52 NDEKKMGTIVIRGDNVILI 70
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 32/48 (66%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
N ++ + ++ ++L+G+ AFDRH N+VL + +E+ P+ GK +++
Sbjct: 14 NWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 67
EEE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 58
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT---EHPRAGKGKKKSK-PVNKD- 85
N ++ I+ + + G++ AFD+H N+VL + +E T + K K S+ VN+D
Sbjct: 49 NFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAKAKVGSQVKVNEDK 108
Query: 86 RFISKMFLRGDSVILIL 102
RF+ + LRG+ V+ ++
Sbjct: 109 RFLGLIILRGEQVVSVV 125
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
Length = 79
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ VL+ + K + G +K++D H N+VLEN +E+ + R +
Sbjct: 20 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGT 65
Query: 91 MFLRGDSVILI 101
+ +RGD+VIL+
Sbjct: 66 IVIRGDNVILV 76
>gi|281210655|gb|EFA84821.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 132
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++++ R+ KK +G ++ FD+ N++L++ E R G K S D+ +
Sbjct: 13 DKKLIVVLRDGKKFIGVMRTFDQFANIILQDTIE------RIYVGDKYS-----DKHLGV 61
Query: 91 MFLRGDSVILI 101
F+RGD+V+++
Sbjct: 62 FFIRGDTVVIL 72
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++++GR AFDRH N+VL + +E P+ GK +++ + + R +
Sbjct: 14 NFRMRVTLVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEEERE---ERRVLGL 70
Query: 91 MFLRGDSVI-LILKNP 105
+ LRG+ +I L ++ P
Sbjct: 71 VLLRGEEIISLTIEGP 86
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL D V + V+++ + ++L G ++ +D H N+VL+ +E+ R+
Sbjct: 5 PLDIL-DQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEEIEGGQSRS------- 56
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + +RGD+VI I
Sbjct: 57 --------VGTLIVRGDNVIYI 70
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 23/92 (25%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL----------ENVKEMWTEH 69
PL +L S+ + ++ + R +++L G++ A+D+H NMVL E ++ + EH
Sbjct: 12 PLDLLRLSL--DERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVEYDEDTFEEH 69
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+ K R I +++RGD VIL+
Sbjct: 70 VKMTK-----------RNIDMLYVRGDGVILV 90
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + ++N+K +G + AFDRH N+VL + +E R GK K++ R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEF-----RMTLGKDKNR-TEIKRTLGFVLL 69
Query: 94 RGDSVI 99
RG++++
Sbjct: 70 RGENIV 75
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ S+ + ++ + CR ++L G++ ++D+H NMVL +V+E T ++
Sbjct: 8 PLDLIRLSL--DERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEI 65
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+K R I +F+RGD VIL+
Sbjct: 66 VRTSK-RSIEMLFVRGDVVILV 86
>gi|238880160|gb|EEQ43798.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 110
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS---KPVNKDRF 87
N ++ I +N+ LG + +FD+H N+VL + +E + KK + +PV R
Sbjct: 6 NFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYDKRN 65
Query: 88 ISKMFLRGDSVI 99
+ + LRGD V+
Sbjct: 66 LGLIILRGDQVV 77
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + ++ +K +G AFD+H N+VL + +E GKG K K V R + +
Sbjct: 15 RVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITK---GKGPDKQK-VELKRTLGFIM 70
Query: 93 LRGDSVI 99
LRG++++
Sbjct: 71 LRGENIV 77
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ I ++++ +G KAFD+H N++L + +E P K SK +D R +
Sbjct: 6 NYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKP------KNSKEAERDEKRSL 59
Query: 89 SKMFLRGDSVI 99
+ LRG +++
Sbjct: 60 GFVLLRGQNIV 70
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
T P+ +L +++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 8 TKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGE-------- 57
Query: 78 KSKPVNKDRFISKMFLRGDSVILI 101
NK F ++ +RGD+VI +
Sbjct: 58 -----NKGVF-DRILVRGDNVIFV 75
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L S+ N+QVLI + ++ G +K+FD H N+VL +E+ G + +
Sbjct: 12 PLDVLGKSL--NSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL--------DGLETA 61
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + + +RGD+++ I
Sbjct: 62 KR------LGIVLIRGDNIVYI 77
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum Z-7303]
Length = 72
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL +++ NT V++ R +++ G ++ +D H N+VL+N +E+
Sbjct: 5 PLDILNNAL--NTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEEL-----------NDG 51
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ V K + + +RGD+V+ +
Sbjct: 52 EIVRK---LGSVVIRGDNVVYV 70
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L +++ N+ V++ + ++ G ++ +D H N+VL+N +E+
Sbjct: 5 PLDVLNEAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-------------- 48
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K R + + +RGD+V+ +
Sbjct: 49 KENEASRKLGTIIVRGDTVVYV 70
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 20 PLSILTDSVKHNTQVLINCRNN--KKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P++ + + + H T V ++ G+++ FD N+V+++ E+ + P++GK
Sbjct: 13 PINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAVD-PKSGKESD 71
Query: 78 KSKPVNKDRFISKMFLRGDSVILILKN 104
+K F+ ++ L+GD++ L++ N
Sbjct: 72 -----DKAVFLGRIMLKGDNITLVVAN 93
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V ++ ++ +K +G AFDRH N+VL + +E R K +P+ R + +
Sbjct: 15 RVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEF-----RLTLNKGLKEPIEVKRTLGFIL 69
Query: 93 LRGDSVI 99
LRG++++
Sbjct: 70 LRGENIV 76
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|353237452|emb|CCA69424.1| related to LSM1-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 136
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 24 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVN 83
L D V + +VL+ R+ +KL+G ++++D+ N+VLE E +K P
Sbjct: 13 LVDCV--DKKVLVILRDGRKLIGVLRSYDQFANLVLEGTIE-----------RKHLGPYF 59
Query: 84 KDRFISKMFLRGDSVILI 101
+ + M +RG++V+L+
Sbjct: 60 AELPVGVMVIRGENVVLL 77
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ I ++ ++++G+ AFD+ N+V+ + +E P+ KG++ V + R +
Sbjct: 10 NYRMRITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE----VEQKRSLGF 65
Query: 91 MFLRGDSVILIL 102
+ +RG+++I I+
Sbjct: 66 LLIRGENIISIV 77
>gi|299755906|ref|XP_002912145.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea okayama7#130]
gi|298411435|gb|EFI28651.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea okayama7#130]
Length = 87
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNN--KKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
++ P++++ +++ T+V+I +N +L GR+ FD N+V+++ E++
Sbjct: 5 QQRVMVQPINVIFKNLQQKTKVVIWLYDNIEMRLEGRIIGFDEFMNLVIDDAAEVYV--- 61
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K +KP R + ++ L+GD++ LI
Sbjct: 62 ------KDAKP---RRELGRILLKGDNITLI 83
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + K + G + FD+H N++LE+ +E+ E
Sbjct: 9 VLDESI--NKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVE-------------- 52
Query: 83 NKDRFISKMFLRGDSVILILKNP 105
+ R + + +RGD+V++I P
Sbjct: 53 GETRTLGTIVVRGDNVVIISPPP 75
>gi|193582435|ref|XP_001943900.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like
[Acyrthosiphon pisum]
Length = 217
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 46 GRVKAFDRHCNMVLENVKEMWTEHPRA-----GKGKKKSKPVNKD--------------R 86
G + AFD+H N+V+++V E+WT + G + PV K R
Sbjct: 138 GYIIAFDKHWNLVMDDVDEVWTRKNKYKSLAIGDARSLDDPVEKPYTVIKKIRGHQVCRR 197
Query: 87 FISKMFLRGDSVILILK 103
+ + +RG+ ++L+ K
Sbjct: 198 HVPRFLVRGEQIVLVAK 214
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + + + L+G A+D+H NMVL + +E T K KK + + R +
Sbjct: 14 NYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEEFRTV-----KAKKGTDEQTQKRALGF 68
Query: 91 MFLRGDSVI 99
+ LRG++V+
Sbjct: 69 ILLRGENVV 77
>gi|170033183|ref|XP_001844458.1| LSM11 protein [Culex quinquefasciatus]
gi|167873737|gb|EDS37120.1| LSM11 protein [Culex quinquefasciatus]
Length = 279
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 33/116 (28%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRV----KAFDRHCNMVLENVKEMW-------T 67
GPL + ++ +V + R K + G V + FD+H N+ L +V E W +
Sbjct: 130 GPLGEMRTWMRERVRVKVYTRKEKGVRGFVTGFIEVFDKHWNLALSDVFESWRRRKYRYS 189
Query: 68 EHPRAGKGKKKS-----------------KPVNK-----DRFISKMFLRGDSVILI 101
E+ RAG GK + K V++ R + K+ +RG+ V+L+
Sbjct: 190 ENKRAGLGKPQDCSELLRKMGISVPETAVKSVDRKYVMCSRRVPKLIVRGEQVVLV 245
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + +++ RN+K+++G + FD NMVLE+V TE+ GKK +
Sbjct: 7 PLELVDKCIGSRIHIIM--RNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKKIT 60
Query: 80 K 80
K
Sbjct: 61 K 61
>gi|358341144|dbj|GAA48892.1| small nuclear ribonucleoprotein B and B' [Clonorchis sinensis]
Length = 178
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 39 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 98
++ ++L+G KAFDRH N+VL + E H + KG K+ K + R + + LRG+ V
Sbjct: 2 QDGRQLVGTFKAFDRHMNLVLCDCDEF--RHVKV-KGSKQEKEKQEKRALGLVLLRGEHV 58
Query: 99 ILI 101
+ +
Sbjct: 59 VSV 61
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL +V+E
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
T P+ +L +++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 12 TKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGE-------- 61
Query: 78 KSKPVNKDRFISKMFLRGDSVILI 101
NK F ++ +RGD+VI +
Sbjct: 62 -----NKGVF-DRILVRGDNVIFV 79
>gi|154291173|ref|XP_001546172.1| hypothetical protein BC1G_15358 [Botryotinia fuckeliana B05.10]
gi|347441882|emb|CCD34803.1| hypothetical protein [Botryotinia fuckeliana]
Length = 181
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 7 PKQQEEEESFATGP-LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN-VKE 64
P QQ + F T L LTD +++I+ R+ +KL+G ++++D+ N+VL++ ++
Sbjct: 28 PNQQLPAQMFTTAAQLLDLTDK-----KLMISLRDGRKLIGILRSWDQFANIVLQSTIER 82
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFL-RGDSVILI 101
++ P + + ++P +FL RG++V+L+
Sbjct: 83 IFIAPPPSSSPQGATQPGLYADIPRGLFLVRGENVLLL 120
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L ++ N+QVLI + ++ G +++FD H N+VL + +E+ +
Sbjct: 12 PLDVLGRAL--NSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGE---------- 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
R + + +RGD+++ I
Sbjct: 60 ----SSRRLGVVLIRGDNIVYI 77
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI + +++ G++K++D+H N+VL++ +E+ + R + + +
Sbjct: 17 VLIKLKGEREVRGKLKSYDQHLNIVLDDAEEI--------------RENGSTRKLGTIVI 62
Query: 94 RGDSVILI 101
RGD+VILI
Sbjct: 63 RGDTVILI 70
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM 4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL IL +++ NT V++ + ++ G ++ +D H N+VL+N +E+
Sbjct: 1 MANRPLDILNNAL--NTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEEL---------- 48
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
K + V K + + +RGD+V+ +
Sbjct: 49 -KDGEIVRK---LGSVVIRGDNVVYL 70
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ + + ++L+G++ AFDRH N+VL + E R KG + K+ R +
Sbjct: 16 NYRLRVTLNDTRQLVGQMLAFDRHMNLVLVDTIEF-----RRLKGPSSQGDIPKEMKRAL 70
Query: 89 SKMFLRGDSVILI-LKNPLALKQ 110
+ LRG+++I I ++ P +K+
Sbjct: 71 GLIVLRGETIISISVEGPPPVKE 93
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 16/79 (20%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + NK + G + FD+H N++L+ +E+ ++ G S
Sbjct: 9 VLDESI--NKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSD------GDSNS--- 57
Query: 83 NKDRFISKMFLRGDSVILI 101
+ + +RGD+V++I
Sbjct: 58 -----LGSLVVRGDNVVMI 71
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|116783136|gb|ABK22805.1| unknown [Picea sitchensis]
Length = 172
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 6 EPKQQEEEESFATGPLSI-LTDSVKH--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62
E ++QEE S+A GP I L+ S+ + ++L+ R+ +KL+G +++FD+ N VLEN
Sbjct: 37 EFREQEEGMSWA-GPEDIFLSTSLASYLDKKLLVLLRDGRKLIGILRSFDQFANAVLENA 95
Query: 63 KE 64
E
Sbjct: 96 LE 97
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina barkeri
str. Fusaro]
Length = 72
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ +G
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR-------EG 51
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
+ SK + +RGD+V+ +
Sbjct: 52 EVVSK-------FGSVVIRGDNVVYV 70
>gi|145345208|ref|XP_001417111.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577337|gb|ABO95404.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 239
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNKKLLG----RVKAFDRHCNMVLENVKEMWT 67
GPL +L D+ + +V I R+ + + G V+AFD+ NM+L +V+E ++
Sbjct: 126 GPLRVLRDARERRERVKIVTRHARGVRGVATAYVEAFDKFSNMILTDVEETYS 178
>gi|367054976|ref|XP_003657866.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
gi|347005132|gb|AEO71530.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
Length = 179
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
++++ R+ +KLLG ++++D+ N+VL++ KE P + + + DR +
Sbjct: 53 KLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVPPGTAPNQTRGLYADIDRGL--FL 110
Query: 93 LRGDSVILI 101
+RG++V+L+
Sbjct: 111 VRGENVLLM 119
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM 15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM 15908]
Length = 79
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N+ VL+ + N+++ G + ++D+H N++LE +E+ K S+P +
Sbjct: 20 NSSVLVKMKGNREVKGILTSYDQHLNLILEKAEELE---------GKVSRP------LGL 64
Query: 91 MFLRGDSVILI 101
+ LRGD+VI +
Sbjct: 65 VLLRGDNVIAV 75
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N V + R +++L G++ A+D HCN+VL +V+E
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEE 56
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N VL+ +N + G +K++D H N++L+N +E+ G KK K V
Sbjct: 13 NGSVLVILKNGVYVRGILKSYDNHLNLILDNAEEIME-----GNAKKLGKRV-------- 59
Query: 91 MFLRGDSVILI 101
+RGD+VI I
Sbjct: 60 -LIRGDNVIAI 69
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
N ++ + ++ ++L+G+ AFDRH N+VL + +E+ P+ GK
Sbjct: 14 NWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGK 57
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 16/77 (20%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT--------EHPRAGKGKKKSKPVNK 84
+V + R ++++ G + A+D H N++L +V+E E RA K K
Sbjct: 22 RVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPLEERRAVKMAK------- 74
Query: 85 DRFISKMFLRGDSVILI 101
R + +F+RGD VIL+
Sbjct: 75 -RKMEMLFVRGDGVILV 90
>gi|150399222|ref|YP_001322989.1| small nuclear riboprotein-like protein [Methanococcus vannielii
SB]
gi|150011925|gb|ABR54377.1| Like-Sm ribonucleoprotein core [Methanococcus vannielii SB]
Length = 72
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
PL L S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKLVKGRLKAYDLHMNVALENAK 48
>gi|239790777|dbj|BAH71926.1| ACYPI006936 [Acyrthosiphon pisum]
Length = 209
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + ++++ +G KAFD+H N++L + +E +A ++P + R +
Sbjct: 14 NYRVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGF 73
Query: 91 MFLRGDSVILI 101
+ LRG +++ I
Sbjct: 74 VLLRGQNIVSI 84
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
+ P+ L +S++ N ++I+ + N+ G ++ +D + N+VL+N E
Sbjct: 8 GYVPKPMETLKNSLEKN--IMIDVKGNRMYSGILEGYDIYMNLVLKNATETINNE----- 60
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILI 101
NK F S M LRGD++I +
Sbjct: 61 --------NKGTF-SMMLLRGDNIIFV 78
>gi|193704556|ref|XP_001950622.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Acyrthosiphon pisum]
Length = 209
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + ++++ +G KAFD+H N++L + +E +A ++P + R +
Sbjct: 14 NYRVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGF 73
Query: 91 MFLRGDSVILI 101
+ LRG +++ I
Sbjct: 74 VLLRGQNIVSI 84
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL D V + V+++ + +++L G ++ +D H N+VL+ +E+ G +K
Sbjct: 5 PLDIL-DQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEVTD-----GATQK-- 56
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
I + +RGD+VI I
Sbjct: 57 --------IGTLIVRGDNVIYI 70
>gi|440493439|gb|ELQ75911.1| Small Nuclear ribonucleoprotein G [Trachipleistophora hominis]
Length = 79
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGK 76
NT V + R KK LG++ D HCN++L+N E ++ R G+
Sbjct: 15 NTDVTLYMRKKKKYLGKLIGMDEHCNVLLDNAYEECDDNVRVEIGR 60
>gi|45358711|ref|NP_988268.1| small nuclear ribonucleoprotein [Methanococcus maripaludis S2]
gi|340624470|ref|YP_004742923.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
gi|45047577|emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
gi|339904738|gb|AEK20180.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
Length = 72
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
PL L S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKVVKGRLKAYDLHMNVALENAK 48
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
I+T +K Q+ + + + ++ GR+ FD + N+VLE+ +E+ + +K KP
Sbjct: 9 IMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVK-------RKTHKP- 60
Query: 83 NKDRFISKMFLRGDSVILIL 102
+ ++ L+GD++ L++
Sbjct: 61 -----LGRILLKGDNITLMM 75
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
+V + R +++L G + A+D H N+++ +V+E + + V K R + +F
Sbjct: 24 RVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVENPENPENPNVKVAK-RNVEMLF 82
Query: 93 LRGDSVILI 101
+RGD VIL+
Sbjct: 83 VRGDGVILV 91
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + + VL+ +++K+L+G ++ FD + NM+L+NV E + G + +S
Sbjct: 15 PLELIDKCIGSSIFVLM--KDDKELVGTLRGFDDYINMILDNVTEY--SYSEDGSSRTES 70
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
K + + L G++V ++
Sbjct: 71 K-------LPSIILNGNNVAIL 85
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Rattus norvegicus]
Length = 177
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 20/107 (18%)
Query: 1 MATREEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60
MA +P+Q + A L +LT +++ Q+ + RN+++L GR+ +D+H NM+L
Sbjct: 1 MADDVDPQQTN---NTAEERLDLLTINLEE--QICMKTRNDRELSGRLHVYDQHLNMILG 55
Query: 61 NVKE--MWTE-----HPRAGKGKKKSKPVNKDRFISKMFLRGDSVIL 100
+ +E M E + K K + P+ +F++GD V+
Sbjct: 56 DAEETVMMIEIDEETYEEIDKSTKXNIPM--------LFIQGDDVLF 94
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++ ++G + AFDRH N+VL + +E + KK +P R +
Sbjct: 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYR-------RVKKGEEPKELKRSLGL 58
Query: 91 MFLRGDSVILIL 102
+ LRG++++ +
Sbjct: 59 IMLRGENIVTFV 70
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK-DRFIS 89
N ++ I + + L G++ AFDRH N+VL + +E + G++ P + R +
Sbjct: 16 NWRLKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIKRSLG 75
Query: 90 KMFLRGDSVI 99
+ LRG+SV+
Sbjct: 76 LVILRGESVV 85
>gi|339249835|ref|XP_003373905.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
gi|316969881|gb|EFV53916.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
Length = 199
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ I ++++ L+G +KAFD++ N+VL +E P+AG+ + + R +
Sbjct: 24 NYRMKIVLQDSRILVGYLKAFDKYLNIVLSECEEFRRYRPKAGRTVDR----EEKRTLGF 79
Query: 91 MFLRGDSVI 99
+ LRG+ ++
Sbjct: 80 VLLRGEHIV 88
>gi|328856685|gb|EGG05805.1| hypothetical protein MELLADRAFT_36483 [Melampsora larici-populina
98AG31]
Length = 152
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNK--DRFI 88
+ ++L++ R+ + L+G ++++D+ N+VL++ E H G GK + + + D +
Sbjct: 21 DKKILVSLRDGRSLIGVLRSYDQFANLVLQDAIERI--HVGVGVGKDEERKTGQYADIWR 78
Query: 89 SKMFLRGDSVILI 101
+RG++V+L+
Sbjct: 79 GIYLVRGENVVLL 91
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + +++ +N+K+L+G + FD + NMVLE+V TE+ + G++ +
Sbjct: 6 PLELIDKCIGSRIHIIM--KNDKELVGTLLGFDDYVNMVLEDV----TEYENSSDGRRVT 59
Query: 80 K 80
K
Sbjct: 60 K 60
>gi|367035444|ref|XP_003667004.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
gi|347014277|gb|AEO61759.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++++ R+ +KLLG ++++D+ N+VL++ KE P + + + DR +
Sbjct: 31 DKKLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVAPGTVPNQPRGLYADIDRGL-- 88
Query: 91 MFLRGDSVILI 101
+RG++V+L+
Sbjct: 89 FLVRGENVLLL 99
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD----R 86
N ++ I + + L+G + AFDRH N+VL + +E P+ KG + + ++++ R
Sbjct: 14 NYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPK--KGSEAAAGIHEEREEKR 71
Query: 87 FISKMFLRGDSV 98
+ + LRG++V
Sbjct: 72 VLGLVLLRGENV 83
>gi|261189603|ref|XP_002621212.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239591448|gb|EEQ74029.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239613021|gb|EEQ90008.1| LSM domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 113
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 34 VLINCRNNKKLLGRVK---------------AFDRHCNMVLENVKEMWTEHPRAGKGKKK 78
V + R +++L GR+ A+D HCN+VL +V+E ++
Sbjct: 27 VFVKLRGDRELKGRLHVSGSGIPAIVVDLRMAYDSHCNLVLGDVEETIYIVEEDESEQEI 86
Query: 79 SKPVNKDRFISKMFLRGDSVILI 101
K + K +F+RGDSV+LI
Sbjct: 87 IKTIKKQE--EMLFVRGDSVVLI 107
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N V + R +++L G++ A+D HCN+VL V+E
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L +S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVT-------- 63
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPLA 107
R + + +RGD+++ I + LA
Sbjct: 64 ------RRLGTVLIRGDNIVYISRGKLA 85
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L +S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVT-------- 63
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPLA 107
R + + +RGD+++ I + LA
Sbjct: 64 ------RRLGTVLIRGDNIVYISRGKLA 85
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE + PL ++ + N V + R +++L G++ A+D HCN+VL V+E
Sbjct: 6 EEPHHVSEPLDLV--RLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L ++ N+QVLI + ++ G +++FD H N+VL + +E+ +
Sbjct: 32 PLDVLGRAL--NSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGE---------- 79
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
R + + +RGD+++ I
Sbjct: 80 ----SSRRLGVVLIRGDNIVYI 97
>gi|389751358|gb|EIM92431.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 136
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 24 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVN 83
L D V + ++L+ R+ KKL G ++++D+ N+VLE E + SK
Sbjct: 13 LVDCV--DRKMLVILRDGKKLHGVLRSYDQFANLVLEETIE-----------RIYSKNHY 59
Query: 84 KDRFISKMFLRGDSVILI 101
D+++ +RG++V+L+
Sbjct: 60 ADKYVGLYLIRGENVVLL 77
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF--- 87
N ++ + ++++ L+G AFD+H N+VL + +E T K K KS V+++R
Sbjct: 14 NYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTL-----KAKVKSA-VSEERVEKR 67
Query: 88 -ISKMFLRGDSVI-LILKNP 105
+ + LRG+SV+ L ++ P
Sbjct: 68 HLGLVLLRGESVVSLTVEGP 87
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+++ + + +K+L+G +K FD + NMVLE+V TE+ +G++ +K + +
Sbjct: 19 GSKIWVIMKGDKELVGILKGFDVYVNMVLEDV----TEYEITAEGRRVTK-------LDQ 67
Query: 91 MFLRGDSVILIL 102
+ L G+++ +++
Sbjct: 68 ILLNGNNIAILV 79
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N +V I ++++ +G KAFD+H N++L + +E P K +P +D R +
Sbjct: 14 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP-----KNTKQPEREDKRVLG 68
Query: 90 KMFLRGDSVI 99
+ LRG++++
Sbjct: 69 FVLLRGENIV 78
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus 1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus 1633]
Length = 76
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 16/73 (21%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI + + G+++++D+H N+VL++ +E+ +G S R + + +
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEV--------RGDGSS------RKLGTLVI 63
Query: 94 RGDSVILILKNPL 106
RGD+V+LI +PL
Sbjct: 64 RGDTVVLI--SPL 74
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF--- 87
N ++ + ++++ L+G AFD+H N+VL + +E T K K KS V+++R
Sbjct: 14 NYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTL-----KAKVKSA-VSEERVEKR 67
Query: 88 -ISKMFLRGDSVI-LILKNP 105
+ + LRG+SV+ L ++ P
Sbjct: 68 HLGLVLLRGESVVSLTVEGP 87
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD----R 86
N ++ + ++++ L+G AFD+H N+VL + +E T K K K+ V+++ R
Sbjct: 14 NYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTL-----KSKLKTN-VSEERVEKR 67
Query: 87 FISKMFLRGDSVI 99
++ + LRG+SV+
Sbjct: 68 YLGLVLLRGESVV 80
>gi|331212255|ref|XP_003307397.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297800|gb|EFP74391.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 98
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 20 PLSILTDSVKHNTQVLINCRNNK--KLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P++++ ++ V I +N +L G++ FD N+VL+N E+W ++ KG
Sbjct: 12 PINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWV---KSKKGTP 68
Query: 78 KSKPVNKDRFIS--KMFLRGDSVILI 101
+ V K +S ++ L+G+++ LI
Sbjct: 69 HREAVEKGARVSLGRLLLKGENITLI 94
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit
Length = 85
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L +S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVT-------- 63
Query: 80 KPVNKDRFISKMFLRGDSVILILKNPLA 107
R + + +RGD+++ I + LA
Sbjct: 64 ------RRLGTVLIRGDNIVYISRGKLA 85
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N +V I ++++ +G KAFD+H N++L + +E P K +P +D R +
Sbjct: 14 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP-----KNTKQPEREDKRVLG 68
Query: 90 KMFLRGDSVI 99
+ LRG++++
Sbjct: 69 FVLLRGENIV 78
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
A PL +L +++ T VL+ + ++ G + +D H N+VL+N +E+ + G+
Sbjct: 1 MANRPLDVLNKALQ--TPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEI-----QGGEV 53
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILILKNP 105
+K + + +RGD+V+ + +P
Sbjct: 54 IRK---------LGSVVIRGDTVVFVSPSP 74
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+++ + + +K+L+G +K FD + NMVLE+V TE+ +G++ +K + +
Sbjct: 19 GSKIWVIMKGDKELVGILKGFDVYVNMVLEDV----TEYEITAEGRRVTK-------LDQ 67
Query: 91 MFLRGDSVILIL 102
+ L G+++ +++
Sbjct: 68 ILLNGNNIAILV 79
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VL+ R+ K + GR+K FD H N+VLE+ +E+ + R + + +
Sbjct: 17 VLVKLRDGK-VRGRLKTFDMHLNIVLEDAEEVREDQTRP---------------LGTILI 60
Query: 94 RGDSVILI 101
RGD V+ +
Sbjct: 61 RGDGVVFV 68
>gi|134045481|ref|YP_001096967.1| hypothetical protein MmarC5_0437 [Methanococcus maripaludis C5]
gi|150402324|ref|YP_001329618.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C7]
gi|159905904|ref|YP_001549566.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C6]
gi|132663106|gb|ABO34752.1| Small nuclear ribonucleoprotein, LSM family [Methanococcus
maripaludis C5]
gi|150033354|gb|ABR65467.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C7]
gi|159887397|gb|ABX02334.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C6]
Length = 72
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 63
PL L S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK 48
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
+ +V + ++ + L+G AFD+H N+VL +E R K K K +P + R +
Sbjct: 12 DYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEF-----RPIKPKTKGEPERQTKRILG 66
Query: 90 KMFLRGDSVILI 101
+ +RG++++ I
Sbjct: 67 LVIIRGENIVSI 78
>gi|401412392|ref|XP_003885643.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
gi|325120063|emb|CBZ55615.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
Length = 169
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE---MWTEHPRAGKGKKKSKPVNKDRF 87
N +V + ++++ L+G + AFDRH N+VL + +E + H + GK +++ R
Sbjct: 13 NYRVRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRH-KLADGKHQTEEKEVKRS 71
Query: 88 ISKMFLRGDSVILI 101
+ M +RG++++ +
Sbjct: 72 VGLMMIRGENILTL 85
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + V++ +N+K+++G + FD + NMVLE+V E+ +GK+ +
Sbjct: 14 PLELIDKCIGSKIWVIM--KNDKEIVGTLTGFDDYVNMVLEDV----VEYENTAEGKRMT 67
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + + L G+ + +++
Sbjct: 68 K-------LDTILLNGNHITMLV 83
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
VLI + +K + G + FD+H N++L++ +E+ E G KS + + +
Sbjct: 14 VLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEIPAE------GDSKS--------LGTIVV 59
Query: 94 RGDSVILILKNP 105
RGD+V++I P
Sbjct: 60 RGDNVVMISPPP 71
>gi|328699352|ref|XP_001945843.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Acyrthosiphon pisum]
Length = 235
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 11 EEEESFATGPLSILTDS-----VKH-NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
EE+++F L LT + ++H N +V + ++ + +G KAFD+H N++L + +E
Sbjct: 21 EEKKNFVPQLLEWLTFTKNNKMMQHINYRVRVTLQDFRMFIGTFKAFDKHMNLILADCEE 80
Query: 65 MWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
+A ++P + R + + LRG +++ I
Sbjct: 81 FRRLKRKAKGPTIPAEPRVEKRVLGFILLRGQNIVSI 117
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ + V++ +N+K+++G + FD + NMVLE+V E+ +GK+ +
Sbjct: 14 PLELIDKCIGSKIWVIM--KNDKEIVGTLTGFDDYVNMVLEDV----VEYENTAEGKRMT 67
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + + L G+ + +++
Sbjct: 68 K-------LDTILLNGNHITMLV 83
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + ++N+K +G + AFD++ N+VL + +E R GK K++ R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEF-----RMTLGKDKNR-TEVKRTLGFVLL 69
Query: 94 RGDSVI-LILKNPLALKQ 110
RG++++ K+P+ + Q
Sbjct: 70 RGENIVSFTAKSPVNVPQ 87
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + + + ++G+ AFD+H N+VL + +E + G + + V R +
Sbjct: 15 NYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK--RMLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+++I
Sbjct: 73 LILRGENII 81
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + + + ++G+ AFD+H N+VL + +E + G + + V R +
Sbjct: 15 NYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK--RMLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+++I
Sbjct: 73 LILRGENII 81
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 32 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKM 91
+++ + + +K+L+G +K FD + NMVLE+V TE+ +G++ +K + ++
Sbjct: 20 SKIWVIMKGDKELVGILKGFDVYVNMVLEDV----TEYEITAEGRRVTK-------LDQI 68
Query: 92 FLRGDSVILIL 102
L G+++ +++
Sbjct: 69 LLNGNNIAILV 79
>gi|403411704|emb|CCL98404.1| predicted protein [Fibroporia radiculosa]
Length = 87
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNN--KKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
++ P++++ +++ T+V+I +N ++ GR+ FD N+V++ E++
Sbjct: 5 QQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGRIIGFDEFMNVVIDEATEVYV--- 61
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K +KP R + ++ L+GD++ LI
Sbjct: 62 ------KDAKP---QRELGRILLKGDNITLI 83
>gi|389751015|gb|EIM92088.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 87
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNN--KKLLGRVKAFDRHCNMVLENVKEMWTEHP 70
++ P++++ +++ T+V++ +N ++ GR+ FD N+V+++ E++
Sbjct: 5 QQRVMVQPINVIFKNLQQRTKVVVWLYDNIEMRIEGRIIGFDEFMNIVIDDAAEVYV--- 61
Query: 71 RAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
K++KP R + ++ L+GD++ LI
Sbjct: 62 ------KEAKP---RRELGRIMLKGDNITLI 83
>gi|209882013|ref|XP_002142444.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209558050|gb|EEA08095.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 91
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 9 QQEEEESFATGPLSILTD--SVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66
QQ + T P++ + + K Q+ + L G+++ FD + N+VL++V E++
Sbjct: 3 QQRRTQKIMTQPINQIFRLFTSKQRVQIWLYDHPELSLEGKIQGFDEYMNIVLDDVTEVY 62
Query: 67 TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101
T+ + R I ++ LRG+++ LI
Sbjct: 63 TKKDEVSR-----------RDIGRLMLRGENISLI 86
>gi|328867402|gb|EGG15785.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 84
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 24 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVN 83
L D V V++ R+ KK +G ++ FD+ N++L++ E R G S
Sbjct: 8 LCDEVDKKLIVVL--RDGKKFIGVMRTFDQFANIILQDTVE------RIYVGNCYS---- 55
Query: 84 KDRFISKMFLRGDSVILI 101
D+++ F+RGD+V+++
Sbjct: 56 -DKYLGVFFIRGDNVVIL 72
>gi|358253572|dbj|GAA53446.1| hypothetical protein CLF_110244 [Clonorchis sinensis]
Length = 315
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 14 ESFATGPLSILTDSVKHNTQVLINCRN----NKKLLGRVKAFDRHCNMVLENVKE 64
E+ A GP++ L ++K+ VL+ R L G + AFDR+ N+VL N E
Sbjct: 46 ENRAVGPMARLWRAMKNTEPVLVMTRGLREPRASLTGNLVAFDRYWNLVLSNTTE 100
>gi|256083947|ref|XP_002578196.1| hypothetical protein [Schistosoma mansoni]
gi|353232715|emb|CCD80070.1| hypothetical protein Smp_160100 [Schistosoma mansoni]
Length = 475
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKK----LLGRVKAFDRHCNMVLENVKEMWTEHPRA--- 72
P++ L ++++ +Q+++ R K+ ++G + AFDR+ N++L+NV E P++
Sbjct: 191 PMASLWKAMQNQSQIMVMTRGLKEPRASIIGNLVAFDRYWNLILKNVTEYSVHLPKSALK 250
Query: 73 GKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
G GK +++ + K F R + + LK
Sbjct: 251 GNGKPGRSKKRREQRLRK-FQRNNDALFQLK 280
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL +++ NT V++ + ++ G ++ +D H N+VL+ +E+ K+
Sbjct: 5 PLDILNNAL--NTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEI-----------KEG 51
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + K I + +RGD+V+ +
Sbjct: 52 EIIRK---IGSVVVRGDNVVYV 70
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+++ + + +K+L+G ++ FD + NMVLE+V TE+ +G++ +K + +
Sbjct: 19 GSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV----TEYEITAEGRRITK-------LDQ 67
Query: 91 MFLRGDSVILIL 102
+ L G+++ +++
Sbjct: 68 ILLNGNNIAILV 79
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + + + ++G+ AFD+H N+VL + +E + G + + V R +
Sbjct: 15 NYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK--RMLGL 72
Query: 91 MFLRGDSVI 99
+ LRG+++I
Sbjct: 73 LILRGENII 81
>gi|261334071|emb|CBH17065.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 570
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKK--LLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P+SI V++ +L ++N++ L+ V++ D H M E +M +E A G K
Sbjct: 31 PVSIAKGEVEYPAVLLWRWKSNRQRHLVLSVQSPDSHVGMAPEAAAKMISEDRTAPNGGK 90
Query: 78 KSKPVNKDRFISKMFLR 94
S + D F ++FLR
Sbjct: 91 VSTDITGDYFFGRIFLR 107
>gi|71754689|ref|XP_828259.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833645|gb|EAN79147.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKK--LLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
P+SI V++ +L ++N++ L+ V++ D H M E +M +E A G K
Sbjct: 31 PVSIAKGEVEYPAVLLWRWKSNRQRHLVLSVQSPDSHVGMAPEAAAKMISEDRTAPNGGK 90
Query: 78 KSKPVNKDRFISKMFLR 94
S + D F ++FLR
Sbjct: 91 VSTDITGDYFFGRIFLR 107
>gi|171689342|ref|XP_001909611.1| hypothetical protein [Podospora anserina S mat+]
gi|170944633|emb|CAP70744.1| unnamed protein product [Podospora anserina S mat+]
Length = 193
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ +++I+ R+ +KL+G ++++D+ N+VL++ KE P + + + DR
Sbjct: 64 DKKLMISLRDGRKLIGILRSWDQFANLVLQSTKERIFVPPVLSEKEPTGIFADIDR--GT 121
Query: 91 MFLRGDSVILI 101
+RG++V+L+
Sbjct: 122 FLVRGENVLLL 132
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD-RFIS 89
N ++ I ++++ +G KAFD+H N++L + +E P K +P +D R +
Sbjct: 16 NYRIRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP-----KNTKQPEREDKRVLG 70
Query: 90 KMFLRGDSVI 99
+ LRG++++
Sbjct: 71 FVLLRGENIV 80
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
FAT + L DS+ QVL+ R++ ++ G +KAFD+H N++L++ +E+
Sbjct: 9 FATLG-ATLQDSI--GKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEI 55
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 28 VKH-NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDR 86
V+H N +V + ++++ +G KAFD+H N++L + +E + K + + R
Sbjct: 10 VQHLNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATEREEKR 69
Query: 87 FISKMFLRGDSVI 99
+ + LRG++++
Sbjct: 70 VLGLVLLRGENIV 82
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N V + R +++L G++ A+D HCN+VL V+E
Sbjct: 13 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 46
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L +V N+ VLI + ++ G +K+FD H N+VL++ +E+ KG+
Sbjct: 10 PLDALGKAV--NSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEELE-------KGEVL- 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
R + + +RGD+++ I
Sbjct: 60 ------RRLGTVLIRGDNIVYI 75
>gi|340506197|gb|EGR32392.1| lsm5 protein, putative [Ichthyophthirius multifiliis]
Length = 83
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
PL ++ + H +L+ +NNK+++G ++ FD NMVL+ KE
Sbjct: 8 PLELIDKCIGHKIWILL--KNNKEVVGTLRGFDDFFNMVLDEAKE 50
>gi|444318293|ref|XP_004179804.1| hypothetical protein TBLA_0C04890 [Tetrapisispora blattae CBS
6284]
gi|387512845|emb|CCH60285.1| hypothetical protein TBLA_0C04890 [Tetrapisispora blattae CBS
6284]
Length = 180
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 27 SVKHNTQV--LINCR------NNKKLLGRVKAFDRHCNMVLENVKEMW---TEHPRAGKG 75
SVKHN+++ LIN + ++K +G + +FD H N++L N E T+ P+
Sbjct: 5 SVKHNSRLSHLINYKIRVITIDDKVYIGELLSFDNHMNLILNNCIEQRIPKTQLPKLKDL 64
Query: 76 KKKSKPVNKDRFISKMFLRGDSVI 99
K K + R + + LRGD ++
Sbjct: 65 KSKDSIRIEKRTLGLIILRGDQIL 88
>gi|392574635|gb|EIW67771.1| hypothetical protein TREMEDRAFT_69713 [Tremella mesenterica DSM
1558]
Length = 93
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 17 ATGPLSILTDSVKHNTQVLINCR--NNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK 74
A P++++ ++ +T++ I N ++ + FD N+VL+ +E++ + GK
Sbjct: 7 AVQPINVIFSHLQKHTRITIWLYDSNEFRIEAFIVGFDEFMNLVLDEAEEVYDCAAKPGK 66
Query: 75 GKKKSKPVNKDRFISKMFLRGDSVILI 101
PV R + ++ L+GD++ LI
Sbjct: 67 ------PVKPRRELGRILLKGDNITLI 87
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 14 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPERE----EKRVLGF 69
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 70 VLLRGENIV 78
>gi|260819010|ref|XP_002604675.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
gi|229290003|gb|EEN60686.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
Length = 219
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++ +G KAFD+H N++L + E P++ K +++ + R +
Sbjct: 14 NYRMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQKQEER----EEKRVLGL 69
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 70 VLLRGENIV 78
>gi|391329361|ref|XP_003739143.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Metaseiulus occidentalis]
Length = 209
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++ +G KAFD+H N++L +E R K K+ + + R +
Sbjct: 14 NYRMRVTLQDSRSFIGTFKAFDKHMNLILTECEEF-----RKIKAKQGGQEREEKRVLGL 68
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 69 VLLRGENIV 77
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V + ++++ L+G + AFD+H N+VL + +E + + G+ K+ K R +
Sbjct: 6 NYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQE-YRSIKKKGEDLKEVK-----RSLGF 59
Query: 91 MFLRGDSVILI 101
+ LRG++++ I
Sbjct: 60 IVLRGENIVTI 70
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
+L +S+ N VLI + K + G + FD+H N++L++ +E+ E G KS
Sbjct: 9 VLDESI--NQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPVE------GNSKS--- 57
Query: 83 NKDRFISKMFLRGDSVILILKNP 105
+ + +RGD+V++I P
Sbjct: 58 -----LGTIVVRGDNVVMISPPP 75
>gi|116204657|ref|XP_001228139.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
gi|88176340|gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++++ R+ +KL+G ++++D+ N+VL++ KE P + + + DR +
Sbjct: 54 DKKLMLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDRGL-- 111
Query: 91 MFLRGDSVILI 101
+RG++V+L+
Sbjct: 112 FLVRGENVLLL 122
>gi|241562203|ref|XP_002401328.1| flagelliform silk protein, putative [Ixodes scapularis]
gi|215499857|gb|EEC09351.1| flagelliform silk protein, putative [Ixodes scapularis]
Length = 241
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ + ++++ +G KAFD+H N++L + +E R KGK ++K +++ R +
Sbjct: 14 NYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEF-----RKVKGKNQAKQGDREEKRVL 68
Query: 89 SKMFLRGDSVI 99
+ LRG++++
Sbjct: 69 GLVLLRGENIV 79
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
PL+++ + +++ I + +K+++G++ FD + NMVLE+V E
Sbjct: 12 PLALMDKCI--GSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L SV N+ VLI + +++ G +K+FD H N+VL + +E+
Sbjct: 9 PLDALGKSV--NSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQDGEVT-------- 58
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
R + + +RGD+++ I
Sbjct: 59 ------RRLGVVLIRGDNIVYI 74
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus salmonis]
Length = 95
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ ++ +++ +N+K+++G + FD NMVLE+V TE+ +G++ S
Sbjct: 15 PLELVDKAIGSRIHIIM--KNDKEIVGTLLGFDDFVNMVLEDV----TEYESTPEGRRVS 68
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + ++ L G+ + +++
Sbjct: 69 K-------LDQILLNGNHITMLV 84
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus salmonis]
Length = 95
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL ++ ++ +++ +N+K+++G + FD NMVLE+V TE+ +G++ S
Sbjct: 15 PLELVDKAIGSRIHIIM--KNDKEIVGTLLGFDDFVNMVLEDV----TEYESTPEGRRVS 68
Query: 80 KPVNKDRFISKMFLRGDSVILIL 102
K + ++ L G+ + +++
Sbjct: 69 K-------LDQILLNGNHITMLV 84
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL +++ NT V++ + ++ G+++ +D H N+VL+ +E+ K+
Sbjct: 5 PLDILNNAL--NTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEEL-----------KEG 51
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
V K + + +RGD+++ +
Sbjct: 52 DIVRK---LGSVVIRGDNIVYV 70
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
+L+ RNNK + G ++ FD H N+ LE+ +++ GK K + K+ L
Sbjct: 17 ILLRLRNNKSVRGNLQDFDVHMNLTLEDAEDISD-----GKTVK----------LGKILL 61
Query: 94 RGDSVILI 101
RGD+++ +
Sbjct: 62 RGDNILAV 69
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 6 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKRVLGF 61
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 62 VLLRGENIV 70
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 29 KHNT-QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF 87
+H+T Q+ + + ++ G+++ FD N+V+++ E+ + GKG+ + ++ R
Sbjct: 27 QHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEV----KQPGKGETEEDVKDQRRE 82
Query: 88 ISKMFLRGDSVILI 101
+ ++ L+GD+V LI
Sbjct: 83 VGQILLKGDNVCLI 96
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM 14429]
Length = 77
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 17/72 (23%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAG-KGKKKSKPVNKDRFIS 89
N +L+ RN ++ G + +D+H N++L N +E+ +P+ G KG
Sbjct: 17 NKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEEV---NPKGGVKG-------------G 60
Query: 90 KMFLRGDSVILI 101
M +RGD+V+ I
Sbjct: 61 LMIIRGDTVLFI 72
>gi|160331847|ref|XP_001712630.1| snrpD2 [Hemiselmis andersenii]
gi|159766079|gb|ABW98305.1| snrpD2 [Hemiselmis andersenii]
Length = 84
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
+ ++++ + KKL GR+ A+D + N++L++ + HP K K+K +
Sbjct: 20 DKKIIVITKIGKKLKGRIFAYDSYFNLILKSETILKKNHPIITKKKQK----------NL 69
Query: 91 MFLRGDSVILI 101
+F+RG+ ++LI
Sbjct: 70 IFIRGEQIVLI 80
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N V + R +++L G++ A+D HCN+VL V+E
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 6 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKRVLGF 61
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 62 VLLRGENIV 70
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 36 INCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV---NKDRFISKMF 92
+ + + L+G++ A+D+H N VL +E T + KG S+P + R + +
Sbjct: 11 VTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKG-SSSEPAPTTQQKRTLGLVI 69
Query: 93 LRGDSVILI 101
LRG++++ +
Sbjct: 70 LRGETIVSV 78
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ ++ + + ++G++ AFD+H N+VL + +E K KK+ K + R +
Sbjct: 14 NYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFR-------KLKKQDK--EEKRALGL 64
Query: 91 MFLRGDSVILI 101
+ LRG+SVI +
Sbjct: 65 VLLRGESVITM 75
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM-WTEHPRAGKGKKK 78
PL+++ + +++ I R ++++ G ++ FD + NMVL+ V+E +T KK
Sbjct: 22 PLALIDKCI--GSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASNKK 79
Query: 79 SKPVNKDRFISKMFLRGDSVILIL 102
K V +R + + L G+++ L++
Sbjct: 80 LKRVLVNR-LDTILLSGNNIALLI 102
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ + ++++ ++G + AFDRH N+VL + + E+ R KG++ + R +
Sbjct: 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQ----EYRRVKKGEESKE---LKRSLGL 58
Query: 91 MFLRGDSVILIL 102
+ LRG++++ +
Sbjct: 59 IMLRGENIVTFV 70
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
Length = 81
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L ++ N+QVLI + K+ G +++FD H N+VL + +E+ K
Sbjct: 13 PLDALGQAL--NSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI-----------KDG 59
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + + + + +RGD+++ I
Sbjct: 60 ESICR---LGVVLVRGDNIVYI 78
>gi|341902435|gb|EGT58370.1| hypothetical protein CAEBREN_14673 [Caenorhabditis brenneri]
Length = 159
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK---GKKKSKPVNKDRF 87
N ++ I ++ + +G KAFD+H N++L +E P+AGK G++K R
Sbjct: 14 NYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADGEEK-------RI 66
Query: 88 ISKMFLRGDSVI 99
+ + LRG+ ++
Sbjct: 67 LGLVLLRGEHIV 78
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 93
V + ++N+K +G + A+D++ N+VL + +E R GK K++ R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEF-----RMTLGKDKNR-TEVKRTLGFVLL 69
Query: 94 RGDSVI-LILKNPLALKQ 110
RG++++ K+P+ + Q
Sbjct: 70 RGENIVSFTAKSPVNVPQ 87
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
Length = 76
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 17/69 (24%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE-HPRAGKGKKKSKPVNKDRFISKMF 92
VL+ RN + + G ++ FD H N+ LE+ +++ E H + G K+
Sbjct: 17 VLLRLRNTRTVQGTLRDFDIHMNLTLEDAEDVTEEKHEKLG----------------KIL 60
Query: 93 LRGDSVILI 101
LRGD+++ +
Sbjct: 61 LRGDNILAV 69
>gi|255717679|ref|XP_002555120.1| KLTH0G01804p [Lachancea thermotolerans]
gi|238936504|emb|CAR24683.1| KLTH0G01804p [Lachancea thermotolerans CBS 6340]
Length = 192
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 13 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 72
E S G S L D +++ + + N + K +G + AFD H N+VL E +
Sbjct: 31 EMSVKVGHKSKLADLLRYRIRAVTN--DGKAFVGELLAFDAHMNLVLAECVEHRIPSTQV 88
Query: 73 GKGKKKSKPVN-----KDRFISKMFLRGDSVI 99
K K+K V+ + R + + LRGD V+
Sbjct: 89 QSLKAKAKEVDAQPKIETRTLGLVVLRGDQVL 120
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 13 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPERE----EKRVLGF 68
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 69 VLLRGENIV 77
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 142 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPERE----EKRVLGF 197
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 198 VLLRGENIV 206
>gi|315048339|ref|XP_003173544.1| methyltransferase [Arthroderma gypseum CBS 118893]
gi|311341511|gb|EFR00714.1| methyltransferase [Arthroderma gypseum CBS 118893]
Length = 499
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 55 CNMVLENVKEMW-TEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNP 105
C+ + + + W +HPR G K+ +PV K+ F S+ GD ++++ P
Sbjct: 444 CSKAADVLTDFWYKDHPRNGDMKEAFQPVLKEHFASRPLEVGDQAVILIAKP 495
>gi|268561770|ref|XP_002646524.1| C. briggsae CBR-SNR-2 protein [Caenorhabditis briggsae]
Length = 160
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK---GKKKSKPVNKDRF 87
N ++ I ++ + +G KAFD+H N++L +E P+AGK G++K R
Sbjct: 14 NYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADGEEK-------RI 66
Query: 88 ISKMFLRGDSVI 99
+ + LRG+ ++
Sbjct: 67 LGLVLLRGEHIV 78
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL +L +++ T VL+ + ++ G + +D H N+VLEN +E+ +
Sbjct: 5 PLDVLNKALQ--TPVLVRLKGGREFRGILNGYDIHMNIVLENAEEI-----------QNG 51
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ V K + + +RGD+V+ +
Sbjct: 52 EVVRK---LGSVVIRGDTVVFV 70
>gi|412985477|emb|CCO18923.1| small nuclear ribonucleoprotein E [Bathycoccus prasinos]
Length = 91
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 14 ESFATGPLSILTDSVKHNTQVLI----NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEH 69
+ T P++++ ++ ++V I + N L G++ FD + N+VL++ +E+
Sbjct: 6 QRIMTQPINLIFRFLQTKSRVQIWLYEHAANGDVLEGQIVGFDEYMNLVLDDCEEV---- 61
Query: 70 PRAGKGKKKSKPVNKDRFISKMFLRGDSVILILK 103
R G K+++ + ++ L+GDSV +++K
Sbjct: 62 KRVGGAKQRTS-------VGRVLLKGDSVTMMVK 88
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 29 KHNT-QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF 87
+H+T Q+ + + ++ G+++ FD N+V++ E+ + GKG+ ++ ++ R
Sbjct: 26 QHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEV----KQPGKGQTEADVKDQRRE 81
Query: 88 ISKMFLRGDSVILI 101
+ ++ L+GD+V LI
Sbjct: 82 LGQILLKGDNVCLI 95
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
+ L DS+ QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 14 ATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|329765753|ref|ZP_08257322.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137819|gb|EGG42086.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 76
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +L+ RNNK + G ++ FD H N+ L+N +++ NK + +
Sbjct: 14 NKVILLRLRNNKSVRGSLQDFDIHMNLTLDNAEDISD---------------NKVVSLGR 58
Query: 91 MFLRGDSVILI 101
+ LRGD+++ +
Sbjct: 59 ILLRGDNILAV 69
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPV 82
I+T +K Q+ + + + ++ GR+ FD + N+VLE+ +E+ K +KS
Sbjct: 9 IMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI-----NVKKNTRKS--- 60
Query: 83 NKDRFISKMFLRGDSVILIL 102
+ ++ L+GD++ L++
Sbjct: 61 -----LGRILLKGDNITLMM 75
>gi|219110255|ref|XP_002176879.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411414|gb|EEC51342.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 26/117 (22%)
Query: 11 EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMW 66
E + GP +++ ++ H +V + R + G V AFD+H N++L +V+E++
Sbjct: 207 EIAQDLQEGPFALMYNTFVHKQRVRVVLRYVNGIRGIVTGYLVAFDKHFNLILRDVEEVY 266
Query: 67 TEHPRAGKGKKKSKP--------------------VNKDRFISKMFLRGDSVILILK 103
++ RA +G ++S ++ R + ++ +RGD+V+++ +
Sbjct: 267 SK--RAERGFEQSNAEMELRRRRTNLYRATDHLDWCSRRRCMRQIMVRGDNVVIVYR 321
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
PL+++ + V++ + +K+++G++ FD + NMVLE+V E
Sbjct: 12 PLALMDKCIGSKIWVML--KGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 24 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
L DS+ QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 16 LQDSI--GKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEI 55
>gi|328858459|gb|EGG07571.1| hypothetical protein MELLADRAFT_71607 [Melampsora larici-populina
98AG31]
Length = 114
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG------KKKSKPVNK 84
N ++ + +++ L G++ AFDRH N+VL + +E + KG +S+ +
Sbjct: 6 NYRLRVTLNDSRTLTGQMLAFDRHLNLVLADCEEFRFIKQKKRKGLSTGPTPDESEELEM 65
Query: 85 DRFISKMFLRGDSVI 99
R + + LRG++++
Sbjct: 66 KRALGLVILRGETIV 80
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 24 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 65
L DS+ QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 16 LQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|256075617|ref|XP_002574114.1| small nuclear ribonucleoprotein-associated protein [Schistosoma
mansoni]
gi|353233403|emb|CCD80758.1| putative small nuclear ribonucleoprotein-associated protein
[Schistosoma mansoni]
Length = 199
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ ++ ++L+G KAFDRH N++L + E +A K+ K + R +
Sbjct: 14 NYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKNKA---AKQDKDRQEKRALGL 70
Query: 91 MFLRGDSVILI 101
+ LRG+ V+ +
Sbjct: 71 VLLRGEHVVTM 81
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSK-----PVNK-DR 86
++ + +N++L+G++ AFDRH N+VL + +E R K KKKS P + R
Sbjct: 8 RIRVTLNDNRQLVGQMLAFDRHMNLVLADCEEF-----RRVKQKKKSADDEAVPSQELKR 62
Query: 87 FISKMFLRGDSVI 99
+ + LRG+ ++
Sbjct: 63 SLGLVILRGEMIV 75
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N ++ I ++ + +G++ AFD+H N+VL +E P+ K + + R +
Sbjct: 13 NHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKT----KSQQEREEKRSLGL 68
Query: 91 MFLRGDSVI 99
+ LRG+++I
Sbjct: 69 VILRGETII 77
>gi|341038886|gb|EGS23878.1| hypothetical protein CTHT_0005870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 209
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92
++++ R+ +KL+G ++++D+ N+VL++ KE P + + + DR +
Sbjct: 83 KLMVALRDGRKLIGILRSWDQFANLVLQSTKERIFIPPNTMPNQPRGLYADIDRGL--FL 140
Query: 93 LRGDSVILI 101
+RG++V+L+
Sbjct: 141 VRGENVLLL 149
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL IL D V + V+++ + +++ G ++ +D H N+VL+ +E TE+ + K
Sbjct: 5 PLDIL-DLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEE--TENGQVVK----- 56
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + +RGD+VI I
Sbjct: 57 --------VGTLIVRGDNVIYI 70
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +V I ++++ +G KAFD+H N++L + +E P+ K ++ + R +
Sbjct: 14 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKRVLGF 69
Query: 91 MFLRGDSVI 99
+ LRG++++
Sbjct: 70 VLLRGENIV 78
>gi|302792517|ref|XP_002978024.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
gi|300154045|gb|EFJ20681.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
Length = 1100
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 5 EEPKQQEEEESFATGPLSILTDSVKHNTQ 33
EE ++EEE F GPLS+LT SVK NTQ
Sbjct: 929 EEDTKKEEE--FNIGPLSVLTSSVKQNTQ 955
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|452842154|gb|EME44090.1| hypothetical protein DOTSEDRAFT_130967 [Dothistroma septosporum
NZE10]
Length = 99
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 29 KHNT-QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRF 87
+HNT Q+ + + ++ G+++ FD N+V+++ E+ + P G+ ++ K ++ R
Sbjct: 26 QHNTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEV--KQPAKGQTEEDVK--DQRRE 81
Query: 88 ISKMFLRGDSVILI 101
+ ++ L+GD+V LI
Sbjct: 82 LGQILLKGDNVCLI 95
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|393794933|ref|ZP_10378297.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 76
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 90
N +L+ RNNK + G ++ FD H N+ L+N +++ K P + +
Sbjct: 14 NKVILLRLRNNKSVRGSLQDFDIHMNLTLDNAEDI---------SDNKVVP------LGR 58
Query: 91 MFLRGDSVILI 101
+ LRGD+++ +
Sbjct: 59 ILLRGDNILAV 69
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS-KPVNKD--RF 87
N ++ + +++ L G++ AFD+H N+VL + +E R K K KS P ++ R
Sbjct: 14 NYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEF-----RKVKSKAKSNNPTEQEMKRT 68
Query: 88 ISKMFLRGDSVILI 101
+ + LRG+++I I
Sbjct: 69 LGLVILRGETIISI 82
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 64
N ++ + ++ ++L+G+ AFDRH N+VL + +E
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|219117519|ref|XP_002179554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409445|gb|EEC49377.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 165
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 77
TG S L V+H +V ++ + + ++G AFD+H N+VL +E T + G
Sbjct: 3 TGKGSKLLRYVEHRLRVTLH--DGRSIVGTFLAFDKHLNLVLSEAEEFRTLKSKGGAALL 60
Query: 78 KSKPVNKDRFISKMFLRGDSVI-LILKNP 105
+ + + R + + +RG++V+ L ++ P
Sbjct: 61 EER--TEKRSLGLVLIRGENVVSLAVEGP 87
>gi|392580172|gb|EIW73299.1| hypothetical protein TREMEDRAFT_59464 [Tremella mesenterica DSM
1558]
Length = 215
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 7 PKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66
P Q + T PL+ L + + ++ + I R+ + GR+ D+ CN+VL +E
Sbjct: 5 PNPQPSSNTSPTNPLTYLQNLL--DSPLRITVRDGRVFTGRLLCVDKGCNVVLMPAEEFL 62
Query: 67 TEHPRAGKGKKKSK 80
+ R +G++ SK
Sbjct: 63 PDPSRMIRGERPSK 76
>gi|440297058|gb|ELP89788.1| hypothetical protein EIN_425100 [Entamoeba invadens IP1]
Length = 85
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 19 GPLSILTDSVKHNTQVLINCRNNK--KLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGK 76
P+ D +++ +V I N K+ GR+ AFD + N+ LE +E++
Sbjct: 11 APVRYYADLIRNKQKVTIWLYENTAMKIEGRITAFDTYMNITLEQAEEVYV--------- 61
Query: 77 KKSKPVNKDRFISKMFLRGDSVILILK 103
K N+ R I + L+GD++ ++ K
Sbjct: 62 ---KTSNR-RSIGNIMLKGDNIAVVQK 84
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD--RFI 88
N ++ + ++++ +G KAFD+H N++L + +E R KGK +++ +++ R +
Sbjct: 14 NYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEF-----RKVKGKSQARHGDREEKRVL 68
Query: 89 SKMFLRGDSVI 99
+ LRG++++
Sbjct: 69 GLVLLRGENIV 79
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 79
PL L +S+ N+ V+I + +++ G +K+FD H N+VL + +E+ G+ ++
Sbjct: 11 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR- 62
Query: 80 KPVNKDRFISKMFLRGDSVILI 101
+ + +RGD+++ I
Sbjct: 63 --------LGTVLIRGDNIVYI 76
>gi|119174705|ref|XP_001239694.1| hypothetical protein CIMG_09315 [Coccidioides immitis RS]
Length = 108
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 34 VLINCRNNKKLLGRVKAFDRHCNMVL 59
V + R +++L GR+ A+D HCN+VL
Sbjct: 27 VFVKLRGDRELKGRLHAYDSHCNLVL 52
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 15/86 (17%)
Query: 18 TGPLSILTDSVKHNTQVLINC--RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 75
T P++++ +++ T+V+I N ++ GR+ FD + N+VL+ E W
Sbjct: 8 TQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVE-W--------N 58
Query: 76 KKKSKPVNKDRFISKMFLRGDSVILI 101
KK+ +N + ++ L+GD++ LI
Sbjct: 59 VKKNTRIN----LGRILLKGDTITLI 80
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,665,870,668
Number of Sequences: 23463169
Number of extensions: 59469778
Number of successful extensions: 146659
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 145507
Number of HSP's gapped (non-prelim): 1021
length of query: 110
length of database: 8,064,228,071
effective HSP length: 78
effective length of query: 32
effective length of database: 6,234,100,889
effective search space: 199491228448
effective search space used: 199491228448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)