Query psy1084
Match_columns 110
No_of_seqs 114 out of 1024
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_B Protein (small nuclear 100.0 8.2E-30 2.8E-34 175.2 9.1 106 4-109 12-117 (118)
2 4emg_A Probable U6 snRNA-assoc 99.9 5.9E-25 2E-29 145.5 9.6 86 16-104 6-91 (93)
3 1i4k_A Putative snRNP SM-like 99.9 1.2E-24 4.1E-29 138.7 9.8 74 17-106 2-75 (77)
4 1h64_1 SnRNP SM-like protein; 99.9 1.6E-24 5.3E-29 137.7 9.9 73 17-105 2-74 (75)
5 1th7_A SnRNP-2, small nuclear 99.9 7.1E-25 2.4E-29 141.3 8.4 79 12-106 2-80 (81)
6 4emk_A U6 snRNA-associated SM- 99.9 2.1E-24 7.2E-29 143.4 10.6 77 15-106 16-92 (94)
7 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.3E-24 1.1E-28 142.5 10.4 83 17-108 8-90 (96)
8 1ljo_A Archaeal SM-like protei 99.9 3.9E-24 1.3E-28 136.6 9.7 73 17-105 3-76 (77)
9 4emk_B U6 snRNA-associated SM- 99.9 1.7E-24 5.7E-29 137.9 7.4 73 17-105 2-74 (75)
10 1i8f_A Putative snRNP SM-like 99.9 7.7E-24 2.6E-28 136.5 9.9 74 15-105 7-80 (81)
11 1mgq_A SM-like protein; LSM, R 99.9 9.4E-24 3.2E-28 136.8 9.5 71 17-103 13-83 (83)
12 3s6n_F Small nuclear ribonucle 99.9 1.3E-23 4.3E-28 137.3 10.1 76 17-108 4-79 (86)
13 3s6n_E Small nuclear ribonucle 99.9 4.7E-24 1.6E-28 141.1 7.5 77 14-105 11-91 (92)
14 1d3b_A Protein (small nuclear 99.9 3.2E-23 1.1E-27 132.1 9.7 73 17-105 3-75 (75)
15 1d3b_B Protein (small nuclear 99.9 8.6E-24 2.9E-28 138.6 6.9 85 17-107 2-86 (91)
16 1n9r_A SMF, small nuclear ribo 99.9 2.2E-23 7.6E-28 138.0 8.6 76 14-105 16-92 (93)
17 2fwk_A U6 snRNA-associated SM- 99.9 1.1E-23 3.9E-28 145.1 6.6 89 16-108 25-116 (121)
18 3s6n_G Small nuclear ribonucle 99.9 3.7E-23 1.3E-27 132.0 8.0 73 18-106 3-75 (76)
19 4emh_A Probable U6 snRNA-assoc 99.9 1.2E-22 4.1E-27 137.3 8.3 76 18-108 15-90 (105)
20 4emk_C U6 snRNA-associated SM- 99.9 1.9E-22 6.6E-27 137.7 9.1 82 17-107 21-102 (113)
21 1b34_A Protein (small nuclear 99.9 6.3E-22 2.1E-26 136.1 9.0 73 18-106 1-73 (119)
22 3pgw_B SM B; protein-RNA compl 99.9 2.5E-21 8.4E-26 145.9 11.2 82 17-104 2-83 (231)
23 2y9a_D Small nuclear ribonucle 99.8 1.2E-20 4.2E-25 131.0 9.1 74 17-106 3-76 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 9.6E-20 3.3E-24 127.1 8.0 66 22-107 3-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.2 7E-06 2.4E-10 53.2 8.0 64 17-103 6-70 (86)
26 1u1s_A HFQ protein; SM-like ba 97.5 0.00016 5.4E-09 46.4 4.7 38 22-59 10-47 (82)
27 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00017 5.8E-09 45.4 4.0 38 22-59 12-49 (74)
28 3sb2_A Protein HFQ; SM-like, R 97.4 0.00027 9.2E-09 45.1 4.7 37 22-58 11-47 (79)
29 3ahu_A Protein HFQ; SM-like mo 97.3 0.00037 1.3E-08 44.3 4.6 38 22-59 14-51 (78)
30 2qtx_A Uncharacterized protein 97.2 0.00035 1.2E-08 43.7 4.0 38 23-60 17-54 (71)
31 2y90_A Protein HFQ; RNA-bindin 97.2 0.00046 1.6E-08 46.1 4.7 40 22-61 12-51 (104)
32 1kq1_A HFQ, HOST factor for Q 97.2 0.00063 2.1E-08 43.1 4.9 38 22-59 10-47 (77)
33 3hfo_A SSR3341 protein; HFQ, S 95.1 0.053 1.8E-06 33.6 5.3 39 21-59 11-49 (70)
34 3hfn_A ASL2047 protein; HFQ, S 94.8 0.089 3.1E-06 32.7 5.8 40 21-60 13-52 (72)
35 1ycy_A Conserved hypothetical 94.6 0.18 6.1E-06 30.8 6.6 42 22-66 9-50 (71)
36 2fb7_A SM-like protein, LSM-14 94.3 0.41 1.4E-05 31.2 8.3 80 23-109 13-93 (95)
37 2vxe_A CG10686-PA; EDC3, CAR-1 91.1 2 6.9E-05 27.5 10.0 71 27-104 11-82 (88)
38 4a53_A EDC3; RNA binding prote 90.8 0.38 1.3E-05 32.8 4.7 36 25-63 8-45 (125)
39 1y96_B Gemin7, SIP3, GEM-assoc 88.2 3.5 0.00012 26.2 7.4 65 19-104 19-84 (85)
40 2vc8_A Enhancer of mRNA-decapp 85.8 1.6 5.4E-05 27.8 4.8 37 25-63 5-43 (84)
41 1ib8_A Conserved protein SP14. 82.8 1.3 4.5E-05 30.9 3.8 33 24-59 99-135 (164)
42 3rux_A BIRA bifunctional prote 82.2 2.6 8.7E-05 31.5 5.4 33 30-62 223-255 (270)
43 2e12_A SM-like motif, hypothet 75.3 4.6 0.00016 26.1 4.3 26 23-48 20-45 (101)
44 2xk0_A Polycomb protein PCL; t 64.6 16 0.00055 22.3 4.8 40 29-68 17-57 (69)
45 2dxu_A Biotin--[acetyl-COA-car 57.7 10 0.00034 27.6 3.7 30 30-61 188-217 (235)
46 2ej9_A Putative biotin ligase; 57.6 20 0.0007 25.8 5.3 41 20-61 177-221 (237)
47 1bia_A BIRA bifunctional prote 56.0 23 0.0008 26.5 5.6 31 30-61 272-302 (321)
48 2eay_A Biotin [acetyl-COA-carb 54.0 12 0.0004 27.1 3.5 30 30-61 187-216 (233)
49 3rkx_A Biotin-[acetyl-COA-carb 53.7 20 0.00068 27.2 4.9 31 30-61 278-308 (323)
50 2rm4_A CG6311-PB, DM EDC3; enh 52.3 37 0.0013 22.1 5.2 37 25-64 8-45 (103)
51 4hcz_A PHD finger protein 1; p 52.2 23 0.00078 20.9 3.9 39 29-67 5-46 (58)
52 3by7_A Uncharacterized protein 50.3 49 0.0017 21.4 7.6 66 35-105 7-76 (100)
53 1ky9_A Protease DO, DEGP, HTRA 49.9 20 0.00068 28.3 4.5 31 31-61 110-140 (448)
54 4a8c_A Periplasmic PH-dependen 49.6 21 0.0007 28.0 4.5 33 30-62 86-118 (436)
55 3bfm_A Biotin protein ligase-l 47.9 34 0.0012 24.5 5.1 27 30-61 193-219 (235)
56 3stj_A Protease DEGQ; serine p 41.9 31 0.001 26.2 4.3 30 31-60 87-116 (345)
57 1sg5_A ORF, hypothetical prote 39.8 16 0.00056 22.8 2.1 26 22-47 16-41 (86)
58 1te0_A Protease DEGS; two doma 39.0 51 0.0018 24.3 5.1 31 31-61 65-95 (318)
59 3pv2_A DEGQ; trypsin fold, PDZ 38.8 27 0.00093 27.6 3.6 31 31-61 101-131 (451)
60 1x4r_A PARP14 protein; WWE dom 38.6 2.3 8E-05 27.7 -2.2 19 45-63 34-52 (99)
61 1lcy_A HTRA2 serine protease; 37.8 54 0.0019 24.3 5.1 31 31-61 70-100 (325)
62 3lgi_A Protease DEGS; stress-s 36.8 63 0.0022 22.7 5.1 31 30-60 75-105 (237)
63 3sti_A Protease DEGQ; serine p 36.4 37 0.0013 24.5 3.8 30 31-60 87-116 (245)
64 1nvp_D Transcription initiatio 35.6 37 0.0013 22.2 3.3 27 39-65 52-81 (108)
65 3tjo_A Serine protease HTRA1; 33.7 56 0.0019 23.0 4.4 30 31-60 86-115 (231)
66 1y8t_A Hypothetical protein RV 33.3 45 0.0016 24.6 4.0 30 32-61 64-93 (324)
67 1nh2_D Transcription initiatio 31.7 46 0.0016 22.2 3.3 29 39-67 56-87 (121)
68 3qo6_A Protease DO-like 1, chl 30.3 86 0.0029 23.5 5.1 30 31-60 76-105 (348)
69 3fb9_A Uncharacterized protein 29.9 62 0.0021 20.5 3.6 26 23-50 19-48 (90)
70 2m0o_A PHD finger protein 1; t 27.2 14 0.00048 23.0 0.1 39 29-67 28-69 (79)
71 4fln_A Protease DO-like 2, chl 26.5 55 0.0019 26.8 3.6 31 30-60 95-126 (539)
72 3num_A Serine protease HTRA1; 25.4 97 0.0033 22.9 4.6 30 31-60 69-98 (332)
73 3mkv_A Putative amidohydrolase 22.2 10 0.00035 26.5 -1.4 25 31-55 398-422 (426)
74 2w5e_A Putative serine proteas 21.6 1.8E+02 0.0061 19.5 5.0 28 30-59 41-68 (163)
75 2eqj_A Metal-response element- 20.4 1.5E+02 0.0051 17.7 3.8 38 29-66 15-55 (66)
76 2qqr_A JMJC domain-containing 20.0 1E+02 0.0036 20.3 3.4 22 30-51 8-29 (118)
No 1
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.96 E-value=8.2e-30 Score=175.18 Aligned_cols=106 Identities=80% Similarity=1.218 Sum_probs=69.2
Q ss_pred CccccchhhhhhcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcc
Q psy1084 4 REEPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVN 83 (110)
Q Consensus 4 ~~~~~~~~e~~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~ 83 (110)
++++.++||++.+..+|+++|+.++..+++|+|+|++|+.|.|+|+|||+||||+|+||+|++...++++++.+..+...
T Consensus 12 ~~~~~~~~e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~ 91 (118)
T 1b34_B 12 TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVN 91 (118)
T ss_dssp --------------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC------------------
T ss_pred ChhhhhhhhhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccc
Confidence 35666889999999999999999996669999999999999999999999999999999999865433222111112233
Q ss_pred eeeeeCeEEEeCCcEEEEeeCCccCC
Q psy1084 84 KDRFISKMFLRGDSVILILKNPLALK 109 (110)
Q Consensus 84 ~~r~lg~i~IRGd~Vv~I~~~~~~~~ 109 (110)
..|++|.+|||||||++|++++..++
T Consensus 92 ~~r~lg~v~IRG~nVv~I~~~~~~~~ 117 (118)
T 1b34_B 92 KDRYISKMFLRGDSVIVVLRNPLIAG 117 (118)
T ss_dssp -CEEEEEEEECGGGEEEEEECCCCCC
T ss_pred cccCcCeEEEcCCEEEEEEeCchhhc
Confidence 46789999999999999999988765
No 2
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.92 E-value=5.9e-25 Score=145.50 Aligned_cols=86 Identities=33% Similarity=0.492 Sum_probs=65.3
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeC
Q psy1084 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 95 (110)
Q Consensus 16 ~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRG 95 (110)
....|+++|+.++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|++...+++++..+. ......+.+|.+||||
T Consensus 6 ~~~~Pl~lL~~~~--~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~-~~~~~~r~lG~v~iRG 82 (93)
T 4emg_A 6 AVAEPLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDK-ALKTIRKHYEMLFVRG 82 (93)
T ss_dssp ---CTTHHHHTTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEECG
T ss_pred ccCCCHHHHHHhC--CCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccc-cccccEeEeceEEECC
Confidence 4569999999999 999999999999999999999999999999999998654332211000 0012367899999999
Q ss_pred CcEEEEeeC
Q psy1084 96 DSVILILKN 104 (110)
Q Consensus 96 d~Vv~I~~~ 104 (110)
|||++|+++
T Consensus 83 ~nVv~I~p~ 91 (93)
T 4emg_A 83 DSVILIAPP 91 (93)
T ss_dssp GGEEEEECC
T ss_pred CeEEEEEec
Confidence 999999985
No 3
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.92 E-value=1.2e-24 Score=138.74 Aligned_cols=74 Identities=24% Similarity=0.510 Sum_probs=66.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
+..|+++|++++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|++.. + ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v~iRG~ 65 (77)
T 1i4k_A 2 PPRPLDVLNRSL--KSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG----E----------VVRKVGSVVIRGD 65 (77)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT----E----------EEEEEEEEEECGG
T ss_pred CccHHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC----C----------cEeECCEEEECCC
Confidence 468999999999 99999999999999999999999999999999998732 1 2567999999999
Q ss_pred cEEEEeeCCc
Q psy1084 97 SVILILKNPL 106 (110)
Q Consensus 97 ~Vv~I~~~~~ 106 (110)
+|++|++++.
T Consensus 66 ~I~~i~~~d~ 75 (77)
T 1i4k_A 66 TVVFVSPAPG 75 (77)
T ss_dssp GEEEEEECC-
T ss_pred EEEEEEeCCC
Confidence 9999999875
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.92 E-value=1.6e-24 Score=137.68 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=65.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
+..|+++|.+++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|++.. + ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v~iRG~ 65 (75)
T 1h64_1 2 AERPLDVIHRSL--DKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG----E----------VVKRYGKIVIRGD 65 (75)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT----E----------EEEEEEEEEECGG
T ss_pred CchHHHHHHHHC--CCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC----C----------ceeECCEEEECCC
Confidence 458999999999 99999999999999999999999999999999998632 1 2567999999999
Q ss_pred cEEEEeeCC
Q psy1084 97 SVILILKNP 105 (110)
Q Consensus 97 ~Vv~I~~~~ 105 (110)
+|++|++++
T Consensus 66 ~I~~i~~~~ 74 (75)
T 1h64_1 66 NVLAISPTE 74 (75)
T ss_dssp GEEEEEEC-
T ss_pred EEEEEEeCC
Confidence 999999865
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.92 E-value=7.1e-25 Score=141.31 Aligned_cols=79 Identities=29% Similarity=0.535 Sum_probs=69.1
Q ss_pred hhhhcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeE
Q psy1084 12 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKM 91 (110)
Q Consensus 12 e~~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i 91 (110)
+|+.++..|+++|.+++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|++.. + ..+.+|.+
T Consensus 2 ~m~~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v 65 (81)
T 1th7_A 2 AMNFLAETAHKVLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----G----------SGKKLGTI 65 (81)
T ss_dssp CCCTTCHHHHHHHHHHT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS----S----------CEEEEEEE
T ss_pred cccccccchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC----C----------ceeECCEE
Confidence 45666779999999999 99999999999999999999999999999999998632 1 24679999
Q ss_pred EEeCCcEEEEeeCCc
Q psy1084 92 FLRGDSVILILKNPL 106 (110)
Q Consensus 92 ~IRGd~Vv~I~~~~~ 106 (110)
+|||++|++|++++.
T Consensus 66 ~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 66 VIRGDNVILISPLQT 80 (81)
T ss_dssp EECGGGEEEEEEC--
T ss_pred EECCCEEEEEEecCC
Confidence 999999999998764
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.91 E-value=2.1e-24 Score=143.35 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=65.2
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEe
Q psy1084 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR 94 (110)
Q Consensus 15 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IR 94 (110)
.....|+++|++++ +++|+|.|++|+.|.|+|+|||+||||+|+||+|++.. +. ..+.+|.++||
T Consensus 16 ~~~~~Pl~lL~~~l--~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~IR 80 (94)
T 4emk_A 16 SMTILPLELIDKCI--GSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEMLLN 80 (94)
T ss_dssp ----CHHHHHHHTT--TSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEEEC
T ss_pred cccccCHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEEEc
Confidence 45679999999999 99999999999999999999999999999999998721 11 24679999999
Q ss_pred CCcEEEEeeCCc
Q psy1084 95 GDSVILILKNPL 106 (110)
Q Consensus 95 Gd~Vv~I~~~~~ 106 (110)
|+||++|++...
T Consensus 81 G~nI~~i~p~~~ 92 (94)
T 4emk_A 81 GNGMCMLIPGGK 92 (94)
T ss_dssp STTEEEEEECC-
T ss_pred CCEEEEEEeCCC
Confidence 999999998754
No 7
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.3e-24 Score=142.47 Aligned_cols=83 Identities=30% Similarity=0.494 Sum_probs=69.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+.+|..++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++...++++. ....+.+|.+||||+
T Consensus 8 ~~~p~~~L~~~i--~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IRG~ 78 (96)
T 3bw1_A 8 METPLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIRGD 78 (96)
T ss_dssp CCCHHHHHGGGT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEECGG
T ss_pred hhhHHHHHHHHC--CCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEECCC
Confidence 468999999999 99999999999999999999999999999999999865332110 123578999999999
Q ss_pred cEEEEeeCCccC
Q psy1084 97 SVILILKNPLAL 108 (110)
Q Consensus 97 ~Vv~I~~~~~~~ 108 (110)
||++|++.+...
T Consensus 79 nVv~I~~~d~~~ 90 (96)
T 3bw1_A 79 TVTLISTPSEDD 90 (96)
T ss_dssp GEEEEECCC---
T ss_pred EEEEEEecCccc
Confidence 999999987653
No 8
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.91 E-value=3.9e-24 Score=136.56 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=65.5
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNN-KKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 95 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~g-r~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRG 95 (110)
...|+++|.+++ +++|+|.|++| +.|.|+|+|||+||||+|+||+|++.. . ..+.+|.++|||
T Consensus 3 m~~P~~~L~~~~--~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG 66 (77)
T 1ljo_A 3 MVLPNQMVKSMV--GKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-----E---------KVRSLGEIVLRG 66 (77)
T ss_dssp CCCHHHHHHHTT--TSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECG
T ss_pred ccchHHHHHHHC--CCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-----C---------cEeECCeEEEeC
Confidence 468999999999 99999999999 999999999999999999999998631 1 256799999999
Q ss_pred CcEEEEeeCC
Q psy1084 96 DSVILILKNP 105 (110)
Q Consensus 96 d~Vv~I~~~~ 105 (110)
+||++|++++
T Consensus 67 ~nI~~i~~~d 76 (77)
T 1ljo_A 67 NNVVLIQPQE 76 (77)
T ss_dssp GGEEEEEEC-
T ss_pred CeEEEEEeCC
Confidence 9999999875
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=1.7e-24 Score=137.85 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=65.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
+..|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~---------~~~~lg~v~iRG~ 65 (75)
T 4emk_B 2 DSSPNEFLNKVI--GKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-----GK---------KTNVYGDAFIRGN 65 (75)
T ss_dssp CSHHHHHHHHTT--TSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-----TE---------EEEEEEEEEEEGG
T ss_pred CCchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-----CC---------cccEecEEEEcCC
Confidence 468999999999 9999999999999999999999999999999999852 11 2467999999999
Q ss_pred cEEEEeeCC
Q psy1084 97 SVILILKNP 105 (110)
Q Consensus 97 ~Vv~I~~~~ 105 (110)
||++|++.+
T Consensus 66 ~I~~i~~~~ 74 (75)
T 4emk_B 66 NVLYVSALD 74 (75)
T ss_dssp GSSEEEEC-
T ss_pred eEEEEEecC
Confidence 999999875
No 10
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.91 E-value=7.7e-24 Score=136.51 Aligned_cols=74 Identities=28% Similarity=0.496 Sum_probs=65.2
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEe
Q psy1084 15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR 94 (110)
Q Consensus 15 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IR 94 (110)
+....|+++|.+++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|+ .. . ..+.+|.++||
T Consensus 7 ~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~-----~---------~~~~lg~v~iR 69 (81)
T 1i8f_A 7 KCFATLGATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID-----G---------NVYKRGTMVVR 69 (81)
T ss_dssp ---CCHHHHHHTTT--TSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET-----T---------EEEEEEEEEEC
T ss_pred ccccchHHHHHHHC--CCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC-----C---------cccCCCEEEEC
Confidence 34679999999999 99999999999999999999999999999999998 21 1 25679999999
Q ss_pred CCcEEEEeeCC
Q psy1084 95 GDSVILILKNP 105 (110)
Q Consensus 95 Gd~Vv~I~~~~ 105 (110)
|++|++|++++
T Consensus 70 G~~I~~i~~~d 80 (81)
T 1i8f_A 70 GENVLFISPVP 80 (81)
T ss_dssp GGGEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99999999876
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=9.4e-24 Score=136.76 Aligned_cols=71 Identities=30% Similarity=0.570 Sum_probs=64.5
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+++|.+++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|++.. + ..+.+|.++|||+
T Consensus 13 ~~~P~~~L~~~~--~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v~IRG~ 76 (83)
T 1mgq_A 13 VQRPLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG----E----------VTRRLGTVLIRGD 76 (83)
T ss_dssp TTCTTHHHHHTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT----E----------EEEEEEEEEECGG
T ss_pred CcChHHHHHHhC--CCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC----C----------cccCCCEEEECCC
Confidence 568999999999 99999999999999999999999999999999998632 1 3567999999999
Q ss_pred cEEEEee
Q psy1084 97 SVILILK 103 (110)
Q Consensus 97 ~Vv~I~~ 103 (110)
+|++|+|
T Consensus 77 ~I~~i~p 83 (83)
T 1mgq_A 77 NIVYISP 83 (83)
T ss_dssp GEEEEEC
T ss_pred EEEEEEC
Confidence 9999975
No 12
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=1.3e-23 Score=137.28 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 4 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 4 PLNPKPFLNGLT--GKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCN 67 (86)
T ss_dssp CCCHHHHHHHHT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGG
T ss_pred CcCcHHHHHHhC--CCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCC
Confidence 468999999999 9999999999999999999999999999999999752 21 2467999999999
Q ss_pred cEEEEeeCCccC
Q psy1084 97 SVILILKNPLAL 108 (110)
Q Consensus 97 ~Vv~I~~~~~~~ 108 (110)
||++|++++...
T Consensus 68 nI~~i~~~d~~~ 79 (86)
T 3s6n_F 68 NVLYIRGVEEEE 79 (86)
T ss_dssp GEEEEEECC---
T ss_pred eEEEEEeCCccc
Confidence 999999987654
No 13
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.90 E-value=4.7e-24 Score=141.12 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=64.6
Q ss_pred hhcCCCcHHHHHhhhhCCcEEEEEe----cCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeC
Q psy1084 14 ESFATGPLSILTDSVKHNTQVLINC----RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFIS 89 (110)
Q Consensus 14 ~~~~~~Pl~~L~~~~~~~krV~V~l----~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg 89 (110)
.+....|+++|++++ +++|+|.+ ++|++|.|+|+|||+||||+|+||+|++.. ++ ..+.+|
T Consensus 11 ~~~m~~Pl~lL~~~l--~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg 75 (92)
T 3s6n_E 11 QKVMVQPINLIFRYL--QNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----TK---------SRKQLG 75 (92)
T ss_dssp ---CCCHHHHHHHHH--HHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----SC---------CEEEEE
T ss_pred ceeccCCHHHHHHHh--CCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----CC---------ceeEcC
Confidence 346789999999999 78877777 999999999999999999999999998632 11 246799
Q ss_pred eEEEeCCcEEEEeeCC
Q psy1084 90 KMFLRGDSVILILKNP 105 (110)
Q Consensus 90 ~i~IRGd~Vv~I~~~~ 105 (110)
.++|||+||++|++.+
T Consensus 76 ~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 76 RIMLKGDNITLLQSVS 91 (92)
T ss_dssp EEEECGGGEEEEEEC-
T ss_pred eEEEeCCEEEEEEeCC
Confidence 9999999999999876
No 14
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.90 E-value=3.2e-23 Score=132.15 Aligned_cols=73 Identities=12% Similarity=0.294 Sum_probs=64.8
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+++|+.++ +++|+|+|++|++|+|+|.|||+|||++|+||+|+.. ++ ..+.+|.+||||+
T Consensus 3 ~~~P~~~L~~~~--g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~----~~----------~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DG----------RVAQLEQVYIRGC 66 (75)
T ss_dssp -CCHHHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT----TS----------CEEEEEEEEECGG
T ss_pred ccCHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECC----CC----------cEEEcCeEEEeCC
Confidence 457999999999 9999999999999999999999999999999999852 11 1457999999999
Q ss_pred cEEEEeeCC
Q psy1084 97 SVILILKNP 105 (110)
Q Consensus 97 ~Vv~I~~~~ 105 (110)
+|.+|+.++
T Consensus 67 nI~~i~lPd 75 (75)
T 1d3b_A 67 KIRFLILPD 75 (75)
T ss_dssp GEEEEEECC
T ss_pred EEEEEEcCC
Confidence 999999875
No 15
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.89 E-value=8.6e-24 Score=138.65 Aligned_cols=85 Identities=20% Similarity=0.402 Sum_probs=65.2
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
+.+|.+.|.+++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++...+.+++. ......+.+|.++|||+
T Consensus 2 ~~~~~~~L~~~~--~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~----~~~~~~~~lg~v~iRG~ 75 (91)
T 1d3b_B 2 TVGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGE 75 (91)
T ss_dssp -----CCCGGGT--TSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTS----CCEEEEEEEEEEEECGG
T ss_pred CCChhHHHHHHc--CCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeecccccccc----ccCccEeECCEEEECCC
Confidence 356778899999 999999999999999999999999999999999987442221110 01124678999999999
Q ss_pred cEEEEeeCCcc
Q psy1084 97 SVILILKNPLA 107 (110)
Q Consensus 97 ~Vv~I~~~~~~ 107 (110)
+|++|++.+.+
T Consensus 76 ~I~~i~~~~~~ 86 (91)
T 1d3b_B 76 NLVSMTVEGPP 86 (91)
T ss_dssp GEEEEEEEECC
T ss_pred eEEEEEcCCCC
Confidence 99999887544
No 16
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=2.2e-23 Score=138.03 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=60.0
Q ss_pred hhcCCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEE
Q psy1084 14 ESFATGPLSILTDSVKHNTQVLINCRNN-KKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 92 (110)
Q Consensus 14 ~~~~~~Pl~~L~~~~~~~krV~V~l~~g-r~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~ 92 (110)
......|+++|..++ +++|+|+|++| +.|.|+|+|||+||||+|+||+|++. ++ ..+.+|.+|
T Consensus 16 ~~~~~~P~~~L~~~i--~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-----~~---------~~~~lg~v~ 79 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLV--NHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-----GV---------SHGTLGEIF 79 (93)
T ss_dssp ----------CGGGT--TSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-----TE---------EEEECCSEE
T ss_pred ccccCChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-----CC---------eEeEcCEEE
Confidence 445678999999999 99999999999 99999999999999999999999862 11 246799999
Q ss_pred EeCCcEEEEeeCC
Q psy1084 93 LRGDSVILILKNP 105 (110)
Q Consensus 93 IRGd~Vv~I~~~~ 105 (110)
|||++|++|.+++
T Consensus 80 IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 80 IRCNNVLYIRELP 92 (93)
T ss_dssp ECGGGEEEEEECC
T ss_pred EcCCeEEEEEeCC
Confidence 9999999999876
No 17
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.89 E-value=1.1e-23 Score=145.10 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=68.6
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCC---CCcccCCCcceeeeeCeEE
Q psy1084 16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAG---KGKKKSKPVNKDRFISKMF 92 (110)
Q Consensus 16 ~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~---~~~~~~~~~~~~r~lg~i~ 92 (110)
....|+++|.+++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++...+... .+.. ......+.+|.+|
T Consensus 25 ~~~~Pl~lL~~~l--~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~--~~~~~~r~lG~v~ 100 (121)
T 2fwk_A 25 NIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKK--LKRVMVNRLETIL 100 (121)
T ss_dssp CCCCHHHHHHHTB--TSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC-----------------CEECCCCSEEE
T ss_pred cccCcHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcc--cccccceEcceEE
Confidence 5579999999999 9999999999999999999999999999999999985421110 0000 0011256799999
Q ss_pred EeCCcEEEEeeCCccC
Q psy1084 93 LRGDSVILILKNPLAL 108 (110)
Q Consensus 93 IRGd~Vv~I~~~~~~~ 108 (110)
|||++|++|++.+.+.
T Consensus 101 IRG~nVv~I~~~~~~~ 116 (121)
T 2fwk_A 101 LSGNNVAMLVPGGDPD 116 (121)
T ss_dssp ECGGGEEEEESSSCC-
T ss_pred ECCCEEEEEEecCCCC
Confidence 9999999999876553
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.89 E-value=3.7e-23 Score=131.97 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=52.3
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCc
Q psy1084 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 97 (110)
Q Consensus 18 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~ 97 (110)
..|-++|.+++ +++|+|.|++|+.|.|+|.|||+||||+|+||+|++.. + ..+.+|.++|||++
T Consensus 3 ~~~~~~L~~~~--~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~lg~v~iRG~~ 66 (76)
T 3s6n_G 3 KAHPPELKKFM--DKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----G----------QQNNIGMVVIRGNS 66 (76)
T ss_dssp -------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSS
T ss_pred CcchHHHHHhC--CCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----C----------cEeEcCEEEECCCe
Confidence 44677999999 99999999999999999999999999999999998632 1 13569999999999
Q ss_pred EEEEeeCCc
Q psy1084 98 VILILKNPL 106 (110)
Q Consensus 98 Vv~I~~~~~ 106 (110)
|++|++.+.
T Consensus 67 I~~i~~~d~ 75 (76)
T 3s6n_G 67 IIMLEALER 75 (76)
T ss_dssp EEEEEC---
T ss_pred EEEEEeccC
Confidence 999998764
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.2e-22 Score=137.26 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=53.9
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCc
Q psy1084 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 97 (110)
Q Consensus 18 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~ 97 (110)
-.|+.+|++++ +++|+|+|++|+.|+|+|.|||+||||+|+||+|++.. ++ ..+.+|.+||||++
T Consensus 15 ~~p~~lL~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d----g~---------~~~~lg~v~IRG~n 79 (105)
T 4emh_A 15 MLPLTLLNATQ--GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD----GD---------KFFRLPECYIRGNN 79 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----SC---------EEEEEEEEEECGGG
T ss_pred CcHHHHHHHhC--CCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccC----Cc---------eeeEcCeEEEeCCe
Confidence 47899999999 99999999999999999999999999999999998521 21 24679999999999
Q ss_pred EEEEeeCCccC
Q psy1084 98 VILILKNPLAL 108 (110)
Q Consensus 98 Vv~I~~~~~~~ 108 (110)
|++|+.++..+
T Consensus 80 I~~I~~pd~l~ 90 (105)
T 4emh_A 80 IKYLRIQDEVL 90 (105)
T ss_dssp EEEEEC-----
T ss_pred EEEEecCHHHh
Confidence 99999987543
No 20
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.88 E-value=1.9e-22 Score=137.74 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+..|.+++ +++|+|.|+|||.|.|+|+|||+||||+|+||+|++... . +. ......+.+|.+||||+
T Consensus 21 kke~i~~L~~~l--~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~-~-~~-----~~~~~~r~lG~v~IRG~ 91 (113)
T 4emk_C 21 RKESILDLSRYQ--DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP-E-DG-----KLTGAIRKLGLVVVRGT 91 (113)
T ss_dssp -----------C--CSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEECTT
T ss_pred ccchHHHHHHHc--CCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCC-C-Cc-----ccccceeEccEEEECCC
Confidence 346888999999 999999999999999999999999999999999987531 1 10 01123678999999999
Q ss_pred cEEEEeeCCcc
Q psy1084 97 SVILILKNPLA 107 (110)
Q Consensus 97 ~Vv~I~~~~~~ 107 (110)
||++|++.+..
T Consensus 92 nIv~I~~~d~~ 102 (113)
T 4emk_C 92 TLVLIAPMDGS 102 (113)
T ss_dssp TEEEEEECC--
T ss_pred eEEEEEecCcc
Confidence 99999998753
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.87 E-value=6.3e-22 Score=136.09 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCc
Q psy1084 18 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 97 (110)
Q Consensus 18 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~ 97 (110)
+.|+++|..++ +++|+|+|++|++|.|+|.+||+||||+|+||+|+.. ++ ..+.+|.+||||+|
T Consensus 1 M~p~~~L~~~~--gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~----~~----------~~~~lg~v~IRG~n 64 (119)
T 1b34_A 1 MKLVRFLMKLS--HETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLK----NR----------EPVQLETLSIRGNN 64 (119)
T ss_dssp -CHHHHHHTCT--TCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECT----TS----------CCEEEEEEEECGGG
T ss_pred CChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecC----CC----------ceeEcceEEEcCCe
Confidence 36999999999 9999999999999999999999999999999999742 11 13579999999999
Q ss_pred EEEEeeCCc
Q psy1084 98 VILILKNPL 106 (110)
Q Consensus 98 Vv~I~~~~~ 106 (110)
|++|++++.
T Consensus 65 I~~I~~pd~ 73 (119)
T 1b34_A 65 IRYFILPDS 73 (119)
T ss_dssp EEEEECCTT
T ss_pred EEEEEeccc
Confidence 999999876
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=2.5e-21 Score=145.91 Aligned_cols=82 Identities=21% Similarity=0.431 Sum_probs=67.3
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
++++-+.|.+++ +++|+|+|+|||+|+|+|++||+||||||+||+|++...+++++. ......+++|.+|||||
T Consensus 2 ~v~k~~kL~klI--dKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~----~~~~~~R~LGlV~IRGd 75 (231)
T 3pgw_B 2 TVGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGE 75 (231)
T ss_pred CcCchHHHHHhc--CCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCccccc----ccccceeEeceEEECCC
Confidence 457788999999 999999999999999999999999999999999987533222211 01124678999999999
Q ss_pred cEEEEeeC
Q psy1084 97 SVILILKN 104 (110)
Q Consensus 97 ~Vv~I~~~ 104 (110)
||++|+..
T Consensus 76 nIV~Isve 83 (231)
T 3pgw_B 76 NLVSMTVE 83 (231)
T ss_pred cEEEEEec
Confidence 99999854
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.83 E-value=1.2e-20 Score=131.00 Aligned_cols=74 Identities=12% Similarity=0.319 Sum_probs=65.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 96 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 96 (110)
...|+.+|+.++ +++|+|.|++|++|+|+|.+||.||||+|+||+|+.. +++ ...++.+||||+
T Consensus 3 ~~~P~~~L~~~~--gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~----~g~----------~~~l~~v~IRGn 66 (126)
T 2y9a_D 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DGR----------VAQLEQVYIRGS 66 (126)
T ss_dssp -CCSHHHHHSCS--SCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECT----TSC----------CEEEEEEEECGG
T ss_pred cccHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcC----CCc----------EeecccEEEeCC
Confidence 358999999999 9999999999999999999999999999999999742 121 346899999999
Q ss_pred cEEEEeeCCc
Q psy1084 97 SVILILKNPL 106 (110)
Q Consensus 97 ~Vv~I~~~~~ 106 (110)
||.+|..++.
T Consensus 67 nI~~I~lpd~ 76 (126)
T 2y9a_D 67 KIRFLILPDM 76 (126)
T ss_dssp GEEEEECCSS
T ss_pred EEEEEEcccc
Confidence 9999998764
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.80 E-value=9.6e-20 Score=127.09 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCcEEEE
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~Vv~I 101 (110)
++|..++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|+. + +.+|.++|||+||++|
T Consensus 3 ~~L~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------~------------~~lg~v~IRG~nI~~I 62 (130)
T 1m5q_A 3 AELNNLL--GREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVHI 62 (130)
T ss_dssp HHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------C------------CEEEEEEECGGGEEEE
T ss_pred hHHHHhC--CCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------C------------CEeceEEEeCCeEEEE
Confidence 6899999 999999999999999999999999999999999961 1 2589999999999999
Q ss_pred eeCCcc
Q psy1084 102 LKNPLA 107 (110)
Q Consensus 102 ~~~~~~ 107 (110)
++++..
T Consensus 63 ~~~d~~ 68 (130)
T 1m5q_A 63 DSTERR 68 (130)
T ss_dssp EECCCC
T ss_pred EcCCcc
Confidence 998764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.23 E-value=7e-06 Score=53.24 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=52.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEec-cccceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeC
Q psy1084 17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFD-RHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 95 (110)
Q Consensus 17 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRG 95 (110)
..+|+ -|..++ +|.|.|.|.+|+.|+|.|.+|| ...|++|.|+ .. ++ ....++|-|
T Consensus 6 ~~~p~-el~~li--~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~---~~-------------~~~~~iI~G 62 (86)
T 1y96_A 6 KKGPL-EWQDYI--YKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LE---DG-------------SMSVTGIMG 62 (86)
T ss_dssp HSCHH-HHHHTT--TCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CT---TS-------------CEEEEEECG
T ss_pred hCCHH-HHHhhc--CCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----cc---CC-------------eEEEEEEec
Confidence 45777 458888 9999999999999999999999 9999999987 11 11 246789999
Q ss_pred CcEEEEee
Q psy1084 96 DSVILILK 103 (110)
Q Consensus 96 d~Vv~I~~ 103 (110)
..|.-|-.
T Consensus 63 ~aI~eI~v 70 (86)
T 1y96_A 63 HAVQTVET 70 (86)
T ss_dssp GGEEEEEE
T ss_pred ceEEEEEE
Confidence 99887743
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.48 E-value=0.00016 Score=46.44 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
.+|..+...+.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 46788888899999999999999999999999985554
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.40 E-value=0.00017 Score=45.43 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.7
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
.+|..+..++.+|+|.|.+|-.++|.+.+||+|+=++-
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 57888888899999999999999999999999985443
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.37 E-value=0.00027 Score=45.06 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.3
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceE
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMV 58 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlv 58 (110)
.+|..+..++.+|+|.|.+|-.++|.+.+||+|+=|+
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 4788888889999999999999999999999998544
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.28 E-value=0.00037 Score=44.34 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=33.2
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
.+|..+...+.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 46777777899999999999999999999999985554
No 30
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.00035 Score=43.71 Aligned_cols=38 Identities=21% Similarity=0.051 Sum_probs=32.5
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 23 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
+|......+.+|+|.|.+|-.++|.+.|||+|+=++-.
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 55666778999999999999999999999999865543
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.22 E-value=0.00046 Score=46.09 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=34.7
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.+|..+..++.+|.|.|.+|-.++|.+.+||+|+=|+-++
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 5788888889999999999999999999999998555433
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.18 E-value=0.00063 Score=43.11 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=33.5
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
.+|..+..++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~ 47 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLN 47 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 46788888899999999999999999999999985554
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.08 E-value=0.053 Score=33.57 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=35.8
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 21 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 21 l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
...|..+..+...|.|.|.+|..+.|.+.-+|.|+=++-
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 778999999999999999999999999999999985554
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.84 E-value=0.089 Score=32.72 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 21 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 21 l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
...|..++++...|.|.|.+|..+.|.+.-+|.|+=++.+
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~ 52 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIAD 52 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEc
Confidence 7789999999999999999999999999999999855543
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.58 E-value=0.18 Score=30.83 Aligned_cols=42 Identities=17% Similarity=0.424 Sum_probs=33.4
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEeceeEEEe
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 66 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~ 66 (110)
..|.+|. ++||-|...+.-.|.|+|.-||+-. +.|+|++.+.
T Consensus 9 ktL~~WK--g~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 9 KVLKEWK--GHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHHT--TSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHHhC--CcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 4688888 9999999999999999999999975 7789998874
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=94.32 E-value=0.41 Score=31.20 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEeccc-cceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCcEEEE
Q psy1084 23 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRH-CNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 101 (110)
Q Consensus 23 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~-mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~Vv~I 101 (110)
--..++ |++|.+..+.+-.|.|+|...|.- .-+.|.+|.-+-++..+... .. + ....-...|+.||+.|--+
T Consensus 13 ~~~~~I--Gs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~---~i-p-p~~~vyeyIvFrGsDIKDL 85 (95)
T 2fb7_A 13 GGTPYI--GSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR---PI-A-PRDETFEYIIFRGSDIKDL 85 (95)
T ss_dssp ---CCS--SEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS---CC-C-SCCCCSSCEEECSTTEEEE
T ss_pred ccCccc--CCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC---cc-C-CCCcceeEEEEcCCCcceE
Confidence 335677 999999999999999999999854 46888887655443221110 00 1 1123468999999999988
Q ss_pred eeCCccCC
Q psy1084 102 LKNPLALK 109 (110)
Q Consensus 102 ~~~~~~~~ 109 (110)
.....++.
T Consensus 86 ~V~e~p~~ 93 (95)
T 2fb7_A 86 TVCEPPKP 93 (95)
T ss_dssp EESCCSCS
T ss_pred EEecCCCC
Confidence 77555443
No 37
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=91.07 E-value=2 Score=27.51 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=51.0
Q ss_pred hhhCCcEEEEEecCCeEEEEEEEEeccc-cceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCcEEEEeeC
Q psy1084 27 SVKHNTQVLINCRNNKKLLGRVKAFDRH-CNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKN 104 (110)
Q Consensus 27 ~~~~~krV~V~l~~gr~i~G~L~~fD~~-mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~Vv~I~~~ 104 (110)
++ |++|.+..+.+-.|.|+|...|.. .-+.|.+|.-+-++..+... .. + ....-...++.||+.|--+...
T Consensus 11 yI--Gs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~---~i-p-p~~~vy~yIvFrgsDIKdL~V~ 82 (88)
T 2vxe_A 11 EL--GSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQF---QI-A-PQSQIYDYILFRGSDIKDIRVV 82 (88)
T ss_dssp CT--TCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSS---CC-C-CCCSCEEEEEEETTTEEEEEEC
T ss_pred cc--CCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCc---cc-C-CCCceeeEEEEccCCccEEEEe
Confidence 55 999999999999999999999976 47889998876544222110 00 1 1122368899999999887654
No 38
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=90.83 E-value=0.38 Score=32.80 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=30.7
Q ss_pred HhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe--ceeE
Q psy1084 25 TDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL--ENVK 63 (110)
Q Consensus 25 ~~~~~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL--~d~~ 63 (110)
..++ |+.|.|.|++|..++|++..+|. -+|.| ++|.
T Consensus 8 sqFl--Gy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~ 45 (125)
T 4a53_A 8 ADFY--GSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAN 45 (125)
T ss_dssp HHHT--TCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETT
T ss_pred HHhc--CceEEEEECCCCEeeEEEEeecC-CeeEEeccccc
Confidence 5677 99999999999999999999984 46777 8773
No 39
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=88.18 E-value=3.5 Score=26.24 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=48.8
Q ss_pred CcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecccc-ceEeceeEEEeeccCCCCCCcccCCCcceeeeeCeEEEeCCc
Q psy1084 19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHC-NMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 97 (110)
Q Consensus 19 ~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~~m-NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd~ 97 (110)
.-+.+|.... +++|.+.+.++-.+.|...|+|... |+..++-. .|- ..++..++|+.-
T Consensus 19 RfLr~l~~m~--~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-----TPi--------------Gv~~eAlLR~~D 77 (85)
T 1y96_B 19 RYLRSLLAMV--GHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-----TPI--------------GVQAEALLRCSD 77 (85)
T ss_dssp HHHHHHHHHT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-----CTT--------------CCEEEEEEEGGG
T ss_pred HHHHHHHHhC--CCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-----CCc--------------ccchhhhhhcCC
Confidence 3455666666 9999999999999999999999765 66655411 111 126789999999
Q ss_pred EEEEeeC
Q psy1084 98 VILILKN 104 (110)
Q Consensus 98 Vv~I~~~ 104 (110)
|++++..
T Consensus 78 ii~~sF~ 84 (85)
T 1y96_B 78 IISYTFK 84 (85)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9999863
No 40
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=85.79 E-value=1.6 Score=27.78 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=33.2
Q ss_pred HhhhhCCcEEEEEecCCe-EEEEEEEEecccc-ceEeceeE
Q psy1084 25 TDSVKHNTQVLINCRNNK-KLLGRVKAFDRHC-NMVLENVK 63 (110)
Q Consensus 25 ~~~~~~~krV~V~l~~gr-~i~G~L~~fD~~m-NlvL~d~~ 63 (110)
..|+ |+.|.+.++++- .|+|.|...|..- ||.|.+|.
T Consensus 5 ~~~i--Gs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWL--GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTT--TCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccc--CCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 4678 999999999998 9999999999874 89999984
No 41
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=82.79 E-value=1.3 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=25.5
Q ss_pred HHhhhhCCcEEEEEec----CCeEEEEEEEEeccccceEe
Q psy1084 24 LTDSVKHNTQVLINCR----NNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 24 L~~~~~~~krV~V~l~----~gr~i~G~L~~fD~~mNlvL 59 (110)
+.++. |+.|.|.++ +.+.+.|.|.++|.- ++.|
T Consensus 99 f~r~~--G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 99 VAGAV--GKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp HHHHC--SEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred HHHhC--CcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 34566 999999994 458999999999875 3444
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=82.16 E-value=2.6 Score=31.49 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecee
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~ 62 (110)
.|++|+|.+.++..+.|+..|.|..-.|+|++.
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 589999998888999999999999999999653
No 43
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=75.28 E-value=4.6 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.3
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEE
Q psy1084 23 ILTDSVKHNTQVLINCRNNKKLLGRV 48 (110)
Q Consensus 23 ~L~~~~~~~krV~V~l~~gr~i~G~L 48 (110)
-+...+.-..+|++.|.||+.+.|++
T Consensus 20 ~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 20 HWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 34455566789999999999999987
No 44
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=64.60 E-value=16 Score=22.26 Aligned_cols=40 Identities=20% Similarity=0.461 Sum_probs=31.1
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccccceEe-ceeEEEeec
Q psy1084 29 KHNTQVLINCRNNKKLLGRVKAFDRHCNMVL-ENVKEMWTE 68 (110)
Q Consensus 29 ~~~krV~V~l~~gr~i~G~L~~fD~~mNlvL-~d~~E~~~~ 68 (110)
..+..|.++-.||+.|-|+++...+.-=||. +|-.+.|..
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 4599999999999999999977776655554 666666653
No 45
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=57.69 E-value=10 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.+++|+|...++ +.|+..|.|..-.|+|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 599999987766 999999999999999964
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=57.57 E-value=20 Score=25.82 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=32.1
Q ss_pred cHHHHHhhhh----CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 20 PLSILTDSVK----HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 20 Pl~~L~~~~~----~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.-.++..|.. .+++|+|...++..+.|+..|.|..-.|+ ++
T Consensus 177 ~~~~~~~~~~~~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 177 DYEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp HHHHHHHHHHHBSSTTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred HHHHHHHHHHhhCccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 3445554432 59999999887776999999999999999 64
No 47
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=55.96 E-value=23 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.|++|+|... +..+.|+..|.|..-.|+|++
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 6999999865 558999999999999999964
No 48
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=54.03 E-value=12 Score=27.06 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.+++|+|...++ +.|+..|.|..-.|+|++
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 599999876554 999999999999999964
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.75 E-value=20 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.|++|+|... +..+.|+..|.|..-.|+|++
T Consensus 278 ~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 278 WNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 5899999764 567999999999999999954
No 50
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=52.28 E-value=37 Score=22.07 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=31.4
Q ss_pred HhhhhCCcEEEEEecCCe-EEEEEEEEeccccceEeceeEE
Q psy1084 25 TDSVKHNTQVLINCRNNK-KLLGRVKAFDRHCNMVLENVKE 64 (110)
Q Consensus 25 ~~~~~~~krV~V~l~~gr-~i~G~L~~fD~~mNlvL~d~~E 64 (110)
..|+ |+-|.|.+.+.- .|+|.+...|. -++.|.+|..
T Consensus 8 edwi--G~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 8 QDWI--GCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGGT--TCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred ccee--ceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 3688 999999999886 99999999996 4488888764
No 51
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=52.22 E-value=23 Score=20.85 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecccc---ceEeceeEEEee
Q psy1084 29 KHNTQVLINCRNNKKLLGRVKAFDRHC---NMVLENVKEMWT 67 (110)
Q Consensus 29 ~~~krV~V~l~~gr~i~G~L~~fD~~m---NlvL~d~~E~~~ 67 (110)
..|.-|.+.-.||+.|-|+++.+|..- =+...|-.+.|.
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 358889999999999999999988763 333355555554
No 52
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=50.33 E-value=49 Score=21.39 Aligned_cols=66 Identities=11% Similarity=0.205 Sum_probs=43.8
Q ss_pred EEEecCCeEEEEEEEEeccccceEeceeEEEeeccCCCCCC----cccCCCcceeeeeCeEEEeCCcEEEEeeCC
Q psy1084 35 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG----KKKSKPVNKDRFISKMFLRGDSVILILKNP 105 (110)
Q Consensus 35 ~V~l~~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~----~~~~~~~~~~r~lg~i~IRGd~Vv~I~~~~ 105 (110)
.|+|++|.++.|.+.--|.. +.++|..+.+..+..+++. -.++-+.+. -..++||.+.|+.++...
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsd---e~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTD---DKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBC---CSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCc---CceEEEchhhEEEEEeCC
Confidence 36799999999999866664 8889999987543211211 111222322 478999999999998653
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.89 E-value=20 Score=28.32 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=27.4
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
...+.|.+.+|+.+.+.++++|...+|.|=.
T Consensus 110 a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlk 140 (448)
T 1ky9_A 110 ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQ 140 (448)
T ss_dssp EEEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 3578999999999999999999999998743
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=49.62 E-value=21 Score=28.02 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecee
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 62 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d~ 62 (110)
....+.|.+.+|+.+.+.++++|...+|.|=.+
T Consensus 86 ~a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 86 QAQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 346899999999999999999999999887443
No 55
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=47.90 E-value=34 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.9
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
.|++|+| ++ +.|+..|.|..-.|+|++
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 5899999 45 999999999999999964
No 56
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=41.87 E-value=31 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=26.8
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
...+.|.+.+|+.+.+.++++|...+|.|=
T Consensus 87 ~~~i~V~~~dg~~~~a~vv~~d~~~DlAlL 116 (345)
T 3stj_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALL 116 (345)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCcEEEEEEEEEcCCCCEEEE
Confidence 457899999999999999999999998873
No 57
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=39.77 E-value=16 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEE
Q psy1084 22 SILTDSVKHNTQVLINCRNNKKLLGR 47 (110)
Q Consensus 22 ~~L~~~~~~~krV~V~l~~gr~i~G~ 47 (110)
+.|.-+...+.+|+|.++||..+.|+
T Consensus 16 D~LElAc~~~~~l~l~l~dGe~~~g~ 41 (86)
T 1sg5_A 16 DNLELACQHHLMLTLELKDGEKLQAK 41 (86)
T ss_dssp HHHHHHHTTTTCEEEECTTTCCEEES
T ss_pred hHHHHHHHcCCeEEEEEeCCCEEEEE
Confidence 45666666799999999999988884
No 58
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=39.01 E-value=51 Score=24.32 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=26.7
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
...+.|.+.+|+.+.+.+++||...+|.|=.
T Consensus 65 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 65 ADQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 4568899999999999999999999988733
No 59
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=38.80 E-value=27 Score=27.57 Aligned_cols=31 Identities=10% Similarity=0.264 Sum_probs=27.3
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
...+.|.+.+|+.+.+.++++|...+|.|=.
T Consensus 101 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 131 (451)
T 3pv2_A 101 ASLITVTLQDGRRLKARLIGGDSETDLAVLK 131 (451)
T ss_dssp EEEEEEECTTSCEEECEEEEEETTTTEEEEE
T ss_pred CCEEEEEEcCCCEEEEEEEecCcCCcEEEEE
Confidence 3578899999999999999999999998744
No 60
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.61 E-value=2.3 Score=27.73 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.6
Q ss_pred EEEEEEeccccceEeceeE
Q psy1084 45 LGRVKAFDRHCNMVLENVK 63 (110)
Q Consensus 45 ~G~L~~fD~~mNlvL~d~~ 63 (110)
-|....||+-.||.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999998876
No 61
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=37.81 E-value=54 Score=24.35 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=26.9
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
...+.|.+.+|+.+.+.++++|....|.|=.
T Consensus 70 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 70 RRRVRVRLLSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEEEECCCCCEEEEE
Confidence 4678999999999999999999998888733
No 62
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=36.77 E-value=63 Score=22.69 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=27.1
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
....+.|.+.+|+.+.+.++++|...+|.|=
T Consensus 75 ~~~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 75 DADQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp TCSEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 3568999999999999999999999988773
No 63
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=36.37 E-value=37 Score=24.48 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=25.4
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
..++.|.+.+|+.+.+.++++|....|.|=
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlL 116 (245)
T 3sti_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALL 116 (245)
T ss_dssp --CEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCEEEE
Confidence 357889999999999999999999888773
No 64
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=35.64 E-value=37 Score=22.17 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=21.1
Q ss_pred cCCeEEEEEE---EEeccccceEeceeEEE
Q psy1084 39 RNNKKLLGRV---KAFDRHCNMVLENVKEM 65 (110)
Q Consensus 39 ~~gr~i~G~L---~~fD~~mNlvL~d~~E~ 65 (110)
++...|.|.| +-.|+.|.++|.|++-.
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 3447788888 45699999999998854
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=33.69 E-value=56 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.8
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
...+.|.+.+|+.+.+.++++|....|.|=
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL 115 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALI 115 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEE
Confidence 568899999999999999999999888873
No 66
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=33.31 E-value=45 Score=24.60 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=26.3
Q ss_pred cEEEEEecCCeEEEEEEEEeccccceEece
Q psy1084 32 TQVLINCRNNKKLLGRVKAFDRHCNMVLEN 61 (110)
Q Consensus 32 krV~V~l~~gr~i~G~L~~fD~~mNlvL~d 61 (110)
..+.|.+.+|+.+.+.+++||...+|.|=.
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllk 93 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVR 93 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEE
Confidence 479999999999999999999999988733
No 67
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=31.70 E-value=46 Score=22.22 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=22.3
Q ss_pred cCCeEEEEEEE---EeccccceEeceeEEEee
Q psy1084 39 RNNKKLLGRVK---AFDRHCNMVLENVKEMWT 67 (110)
Q Consensus 39 ~~gr~i~G~L~---~fD~~mNlvL~d~~E~~~ 67 (110)
++...|.|.|. -.|..|.++|.|++-...
T Consensus 56 ksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 56 QSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred ccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34477888884 569999999999986543
No 68
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=30.30 E-value=86 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=26.8
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
...+.|.+.+|+.+.+.++++|....|.|=
T Consensus 76 ~~~i~V~~~~g~~~~a~~v~~d~~~DlAlL 105 (348)
T 3qo6_A 76 ASDLRVTLADQTTFDAKVVGFDQDKDVAVL 105 (348)
T ss_dssp CSEEEEECTTSCEEEEEEEEEEGGGTEEEE
T ss_pred CcEEEEEECCCCEEEEEEEEEcCcCCEEEE
Confidence 467899999999999999999999988873
No 69
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=29.94 E-value=62 Score=20.50 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHhhhhCCcEEEEEecCCe----EEEEEEEE
Q psy1084 23 ILTDSVKHNTQVLINCRNNK----KLLGRVKA 50 (110)
Q Consensus 23 ~L~~~~~~~krV~V~l~~gr----~i~G~L~~ 50 (110)
-|..++ |++|.+..+.|| +-.|.|..
T Consensus 19 ~l~~~v--G~~V~l~An~GRkK~~er~GvL~e 48 (90)
T 3fb9_A 19 EIKAHE--GQVVEMTLENGRKRQKNRLGKLIE 48 (90)
T ss_dssp HHHHTT--TSEEEEEECCSSSCCSCEEEEEEE
T ss_pred HHHHcC--CCEEEEEecCCcccEEEEEEEEEE
Confidence 366777 999999999997 46898864
No 70
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=27.25 E-value=14 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecccc---ceEeceeEEEee
Q psy1084 29 KHNTQVLINCRNNKKLLGRVKAFDRHC---NMVLENVKEMWT 67 (110)
Q Consensus 29 ~~~krV~V~l~~gr~i~G~L~~fD~~m---NlvL~d~~E~~~ 67 (110)
..|.-|.+.-.||+.|-|+++..|..- =+...|-.+.|.
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 569999999999999999999888643 333455555554
No 71
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=26.54 E-value=55 Score=26.80 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=26.5
Q ss_pred CCcEEEEEec-CCeEEEEEEEEeccccceEec
Q psy1084 30 HNTQVLINCR-NNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 30 ~~krV~V~l~-~gr~i~G~L~~fD~~mNlvL~ 60 (110)
....|.|.+. ||+.+.+.++++|....|.|=
T Consensus 95 ~a~~i~V~~~~dg~~~~A~vv~~D~~~DLAvL 126 (539)
T 4fln_A 95 HDTQVKVKRRGDDRKYVAKVLVRGVDCDIALL 126 (539)
T ss_dssp TEEEEEEECTTCCCCEEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEEccCCEEEEEEEEEECCCCCEEEE
Confidence 3467889885 899999999999999998873
No 72
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=25.44 E-value=97 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.7
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEec
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHCNMVLE 60 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~mNlvL~ 60 (110)
...+.|.+.+|+.+.+.++++|...+|.|=
T Consensus 69 ~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL 98 (332)
T 3num_A 69 KHRVKVELKNGATYEAKIKDVDEKADIALI 98 (332)
T ss_dssp TSEEEEEETTSCEEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCeEEE
Confidence 467899999999999999999999988873
No 73
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.19 E-value=10 Score=26.47 Aligned_cols=25 Identities=4% Similarity=0.299 Sum_probs=14.8
Q ss_pred CcEEEEEecCCeEEEEEEEEecccc
Q psy1084 31 NTQVLINCRNNKKLLGRVKAFDRHC 55 (110)
Q Consensus 31 ~krV~V~l~~gr~i~G~L~~fD~~m 55 (110)
...|.-..++|+.|...|.|.|.|-
T Consensus 398 ~~~v~~Vi~~G~vv~~~l~g~~G~~ 422 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVNELEGHEGHH 422 (426)
T ss_dssp STTCCEEEETTEEEEECCC------
T ss_pred CCCccEEEECCEEEECCccCCCCCC
Confidence 4456666788999999888888763
No 74
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=21.61 E-value=1.8e+02 Score=19.51 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAFDRHCNMVL 59 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~fD~~mNlvL 59 (110)
....+.|.+ +|+.+.+.++ +|.-..|.|
T Consensus 41 ~~~~i~V~~-dg~~~~a~vv-~d~~~DlAl 68 (163)
T 2w5e_A 41 NNTFVNVCY-EGLMYEAKVR-YMPEKDIAF 68 (163)
T ss_dssp TCSEEEEEE-TTEEEEEEEE-ECCSSSEEE
T ss_pred CCceEEEEE-CCEEEEEEEE-EECCCCEEE
Confidence 346788888 9999999999 898777766
No 75
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.40 E-value=1.5e+02 Score=17.68 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=27.5
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccc---cceEeceeEEEe
Q psy1084 29 KHNTQVLINCRNNKKLLGRVKAFDRH---CNMVLENVKEMW 66 (110)
Q Consensus 29 ~~~krV~V~l~~gr~i~G~L~~fD~~---mNlvL~d~~E~~ 66 (110)
..|.-|+..=.||+.|.|+++..|+. +=+...|-.+.|
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w 55 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSW 55 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEE
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEE
Confidence 34788888889999999999999975 223334555554
No 76
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=20.03 E-value=1e+02 Score=20.29 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCcEEEEEecCCeEEEEEEEEe
Q psy1084 30 HNTQVLINCRNNKKLLGRVKAF 51 (110)
Q Consensus 30 ~~krV~V~l~~gr~i~G~L~~f 51 (110)
.|.+|..+-++|+.|.|++.+.
T Consensus 8 vGq~V~akh~ngryy~~~V~~~ 29 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRL 29 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEE
Confidence 3899999999999999988654
Done!