AmiGO: BLAST Results


BLAST match view associations BLAST with SmD2 SmD2 SmD2 Small ribonucleoprotein particle protein SmD2	protein from Drosophila melanogaster	1.7e-36
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Bos taurus	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Bos taurus	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	2.4e-35
BLAST match view associations BLAST with Snrpd2 Snrpd2 Snrpd2 small nuclear ribonucleoprotein D2	protein from Mus musculus	2.4e-35
BLAST match view associations BLAST with Snrpd2 Snrpd2 Snrpd2 small nuclear ribonucleoprotein D2 polypeptide	gene from Rattus norvegicus	2.4e-35
BLAST match view associations BLAST with snrpd2 snrpd2 snrpd2 small nuclear ribonucleoprotein D2 polypeptide	gene_product from Danio rerio	2.4e-35
BLAST match view associations BLAST with snr-4 snr-4 snr-4	gene from Caenorhabditis elegans	1.5e-33
BLAST match view associations BLAST with snr-4 snr-4 snr-4 Probable small nuclear ribonucleoprotein Sm D2	protein from Caenorhabditis elegans	1.5e-33
BLAST match view associations BLAST with snrpD2 snrpD2 snrpD2 putative small nuclear ribonucleoprotein D2	gene from Dictyostelium discoideum	4.1e-33
BLAST match view associations BLAST with AT2G47640 AT2G47640 AT2G47640	protein from Arabidopsis thaliana	5.2e-33
BLAST match view associations BLAST with AT3G62840 AT3G62840 AT3G62840	protein from Arabidopsis thaliana	5.2e-33
BLAST match view associations BLAST with MGG_04013 MGG_04013 MGG_04013 Small nuclear ribonucleoprotein Sm D2	protein from Magnaporthe oryzae 70-15	1.2e-28
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Uncharacterized protein	protein from Canis lupus familiaris	6.4e-28
BLAST match view associations BLAST with PFB0865w PFB0865w PFB0865w small nuclear ribonucleoprotein, putative	gene from Plasmodium falciparum	2.6e-24
BLAST match view associations BLAST with PFB0865w PFB0865w PFB0865w Small nuclear ribonucleoprotein, putative	protein from Plasmodium falciparum 3D7	2.6e-24
BLAST match view associations BLAST with SMD2 SMD2 SMD2 Core Sm protein Sm D2	gene from Saccharomyces cerevisiae	2.6e-22
BLAST match view associations BLAST with I3LGQ4 I3LGQ4 I3LGQ4 Uncharacterized protein	protein from Sus scrofa	4.4e-20
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	2.3e-14
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	7.1e-13
BLAST match view associations BLAST with lsm-3 lsm-3 lsm-3	gene from Caenorhabditis elegans	3.3e-08
BLAST match view associations BLAST with PF08_0049 PF08_0049 PF08_0049 ribonucleoprotein, putative	gene from Plasmodium falciparum	2.9e-07
BLAST match view associations BLAST with LSm3 LSm3 LSm3	protein from Drosophila melanogaster	2.6e-06
BLAST match view associations BLAST with MGG_16841 MGG_16841 MGG_16841 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	3.4e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 U6 snRNA-associated Sm-like protein LSm3	protein from Bos taurus	4.3e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 U6 snRNA-associated Sm-like protein LSm3	protein from Homo sapiens	4.3e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 Uncharacterized protein	protein from Sus scrofa	4.3e-06
BLAST match view associations BLAST with Lsm3 Lsm3 Lsm3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein from Mus musculus	4.3e-06
BLAST match view associations BLAST with Lsm3 Lsm3 Lsm3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	gene from Rattus norvegicus	4.3e-06
BLAST match view associations BLAST with LSM3A LSM3A LSM3A AT1G21190	protein from Arabidopsis thaliana	4.3e-06
BLAST match view associations BLAST with LSM3B LSM3B LSM3B AT1G76860	protein from Arabidopsis thaliana	9.0e-06
BLAST match view associations BLAST with lsm3 lsm3 lsm3 putative U6 small nuclear ribonucleoparticle-associated protein	gene from Dictyostelium discoideum	2.4e-05
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Sus scrofa	6.3e-05
BLAST match view associations BLAST with DDB_G0289453 DDB_G0289453 DDB_G0289453 putative small nuclear ribonucleoparticle-associated protein	gene from Dictyostelium discoideum	8.7e-05
BLAST match view associations BLAST with Lsm11 Lsm11 Lsm11	protein from Drosophila melanogaster	0.00061
BLAST match view associations BLAST with LSM3 LSM3 LSM3 Lsm (Like Sm) protein	gene from Saccharomyces cerevisiae	0.00072

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1084
        (110 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0261789 - symbol:SmD2 "Small ribonucleoprotein par...   393  1.7e-36   1
UNIPROTKB|G3X6Z3 - symbol:SNRPD2 "Small nuclear ribonucle...   382  2.4e-35   1
UNIPROTKB|Q3SZF8 - symbol:SNRPD2 "Small nuclear ribonucle...   382  2.4e-35   1
UNIPROTKB|F1PSI7 - symbol:SNRPD2 "Uncharacterized protein...   382  2.4e-35   1
UNIPROTKB|P62316 - symbol:SNRPD2 "Small nuclear ribonucle...   382  2.4e-35   1
MGI|MGI:98345 - symbol:Snrpd2 "small nuclear ribonucleopr...   382  2.4e-35   1
RGD|1593018 - symbol:Snrpd2 "small nuclear ribonucleoprot...   382  2.4e-35   1
ZFIN|ZDB-GENE-040914-10 - symbol:snrpd2 "small nuclear ri...   382  2.4e-35   1
WB|WBGene00004917 - symbol:snr-4 species:6239 "Caenorhabd...   365  1.5e-33   1
UNIPROTKB|Q18786 - symbol:snr-4 "Probable small nuclear r...   365  1.5e-33   1
DICTYBASE|DDB_G0285395 - symbol:snrpD2 "putative small nu...   361  4.1e-33   1
TAIR|locus:2043323 - symbol:AT2G47640 "AT2G47640" species...   360  5.2e-33   1
TAIR|locus:2081685 - symbol:AT3G62840 "AT3G62840" species...   360  5.2e-33   1
UNIPROTKB|G4NGW0 - symbol:MGG_04013 "Small nuclear ribonu...   319  1.2e-28   1
UNIPROTKB|E2RTK0 - symbol:E2RTK0 "Uncharacterized protein...   312  6.4e-28   1
POMBASE|SPAC2C4.03c - symbol:smd2 "Sm snRNP core protein ...   312  6.4e-28   1
GENEDB_PFALCIPARUM|PFB0865w - symbol:PFB0865w "small nucl...   278  2.6e-24   1
UNIPROTKB|O96265 - symbol:PFB0865w "Small nuclear ribonuc...   278  2.6e-24   1
SGD|S000004265 - symbol:SMD2 "Core Sm protein Sm D2" spec...   259  2.6e-22   1
ASPGD|ASPL0000050456 - symbol:AN1802 species:162425 "Emer...   242  1.7e-20   1
UNIPROTKB|I3LGQ4 - symbol:SNRPD2 "Small nuclear ribonucle...   238  4.4e-20   1
UNIPROTKB|K7EJB5 - symbol:SNRPD2 "Small nuclear ribonucle...   184  2.3e-14   1
UNIPROTKB|K7ERG4 - symbol:SNRPD2 "Small nuclear ribonucle...   170  7.1e-13   1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd...   126  3.3e-08   1
GENEDB_PFALCIPARUM|PF08_0049 - symbol:PF08_0049 "ribonucl...   117  2.9e-07   1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel...   108  2.6e-06   1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot...   107  3.4e-06   1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ...   106  4.3e-06   1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li...   106  4.3e-06   1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li...   106  4.3e-06   1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ...   106  4.3e-06   1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc...   106  4.3e-06   1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear...   106  4.3e-06   1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370...   106  4.3e-06   1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370...   103  9.0e-06   1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme...   101  1.5e-05   1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n...    99  2.4e-05   1
UNIPROTKB|Q29329 - symbol:SNRPD2 "Small nuclear ribonucle...    95  6.3e-05   1
POMBASE|SPBC9B6.05c - symbol:lsm3 "U6 snRNP-associated pr...    95  6.3e-05   1
DICTYBASE|DDB_G0289453 - symbol:DDB_G0289453 "putative sm...    99  8.7e-05   1
FB|FBgn0033450 - symbol:Lsm11 "Lsm11" species:7227 "Droso...    67  0.00061   2
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec...    85  0.00072   1


>FB|FBgn0261789 [details] [associations]
            symbol:SmD2 "Small ribonucleoprotein particle protein SmD2"
            species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR027248 INTERPRO:IPR001163
            EMBL:AE014297 GO:GO:0007067 GO:GO:0007052 GO:GO:0022008
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
            SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 eggNOG:COG1958 KO:K11096 PANTHER:PTHR12777
            GeneTree:ENSGT00390000017608 OMA:VKELWTE EMBL:AY069315
            RefSeq:NP_649645.1 UniGene:Dm.9898 ProteinModelPortal:Q9VI10
            SMR:Q9VI10 DIP:DIP-20721N IntAct:Q9VI10 MINT:MINT-768757
            STRING:Q9VI10 PaxDb:Q9VI10 PRIDE:Q9VI10 EnsemblMetazoa:FBtr0081737
            GeneID:40781 KEGG:dme:Dmel_CG1249 UCSC:CG1249-RA CTD:40781
            FlyBase:FBgn0261789 InParanoid:Q9VI10 OrthoDB:EOG4K98VQ
            PhylomeDB:Q9VI10 GenomeRNAi:40781 NextBio:820557 Bgee:Q9VI10
            GermOnline:CG1249 Uniprot:Q9VI10
        Length = 119

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 76/92 (82%), Positives = 80/92 (86%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR    
Sbjct:    23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPLA 107
                  PVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct:    83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 114


>UNIPROTKB|G3X6Z3 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0071013
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 UniGene:Bt.46839 NextBio:20871576
            PANTHER:PTHR12777 GeneTree:ENSGT00390000017608 OMA:VKELWTE
            EMBL:DAAA02047376 Ensembl:ENSBTAT00000016153 Uniprot:G3X6Z3
        Length = 117

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    83 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 113


>UNIPROTKB|Q3SZF8 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0030532 "small
            nuclear ribonucleoprotein complex" evidence=IEA] InterPro:IPR027248
            INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 EMBL:BC102877
            IPI:IPI00687015 RefSeq:NP_001029648.1 UniGene:Bt.46839
            ProteinModelPortal:Q3SZF8 SMR:Q3SZF8 STRING:Q3SZF8 PRIDE:Q3SZF8
            GeneID:514932 KEGG:bta:514932 CTD:6633 HOGENOM:HOG000223545
            HOVERGEN:HBG054415 InParanoid:Q3SZF8 KO:K11096 OrthoDB:EOG4PC9TN
            NextBio:20871576 PANTHER:PTHR12777 Uniprot:Q3SZF8
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>UNIPROTKB|F1PSI7 [details] [associations]
            symbol:SNRPD2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0030532 "small nuclear ribonucleoprotein
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR027248 INTERPRO:IPR001163 InterPro:IPR010920
            SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            CTD:6633 KO:K11096 PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
            OMA:VKELWTE EMBL:AAEX03000871 RefSeq:NP_001239341.1
            ProteinModelPortal:F1PSI7 Ensembl:ENSCAFT00000007082
            GeneID:100685983 KEGG:cfa:100685983 Uniprot:F1PSI7
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>UNIPROTKB|P62316 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9606 "Homo sapiens" [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0000245 "spliceosomal complex assembly"
            evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
            [GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027248
            INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
            EMBL:CH471126 GO:GO:0003676 GO:GO:0030529 GO:GO:0000387
            GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
            GO:GO:0030532 GO:GO:0000245 GO:GO:0005689 EMBL:AC007191 PDB:3S6N
            PDBsum:3S6N Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            eggNOG:COG1958 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1
            PDB:3PGW PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D
            PDBsum:3CW1 PDBsum:3PGW PDB:1B34 PDBsum:1B34 CleanEx:HS_SNRPD1
            CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
            OrthoDB:EOG4PC9TN PANTHER:PTHR12777 OMA:VKELWTE EMBL:U15008
            EMBL:AK291912 EMBL:BC000486 EMBL:BC001930 EMBL:BU531743
            IPI:IPI00017963 PIR:I38861 RefSeq:NP_004588.1 RefSeq:NP_808210.2
            UniGene:Hs.515472 ProteinModelPortal:P62316 SMR:P62316
            DIP:DIP-31219N IntAct:P62316 MINT:MINT-5002672 STRING:P62316
            PhosphoSite:P62316 DMDM:51338666 PaxDb:P62316 PeptideAtlas:P62316
            PRIDE:P62316 DNASU:6633 Ensembl:ENST00000342669
            Ensembl:ENST00000391932 GeneID:6633 KEGG:hsa:6633 UCSC:uc002pcv.3
            GeneCards:GC19M046190 HGNC:HGNC:11159 HPA:HPA041437 MIM:601061
            neXtProt:NX_P62316 PharmGKB:PA36000 InParanoid:P62316
            PhylomeDB:P62316 EvolutionaryTrace:P62316 GenomeRNAi:6633
            NextBio:25839 Bgee:P62316 CleanEx:HS_SNRPD2 Genevestigator:P62316
            GermOnline:ENSG00000125743 Uniprot:P62316
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>MGI|MGI:98345 [details] [associations]
            symbol:Snrpd2 "small nuclear ribonucleoprotein D2"
            species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=ISO] InterPro:IPR027248 MGI:MGI:98345
            INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:6633
            HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096 OrthoDB:EOG4PC9TN
            PANTHER:PTHR12777 OMA:VKELWTE EMBL:AK007389 EMBL:AK045968
            EMBL:AK088105 EMBL:BC043014 EMBL:BC051208 IPI:IPI00119220
            RefSeq:NP_081219.1 UniGene:Mm.29135 ProteinModelPortal:P62317
            SMR:P62317 MINT:MINT-124854 STRING:P62317 PhosphoSite:P62317
            PaxDb:P62317 PRIDE:P62317 Ensembl:ENSMUST00000049294 GeneID:107686
            KEGG:mmu:107686 InParanoid:P62317 NextBio:359250 Bgee:P62317
            CleanEx:MM_SNRPD2 Genevestigator:P62317
            GermOnline:ENSMUSG00000040824 Uniprot:P62317
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>RGD|1593018 [details] [associations]
            symbol:Snrpd2 "small nuclear ribonucleoprotein D2 polypeptide"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030532
            "small nuclear ribonucleoprotein complex" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027248
            RGD:1593018 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0071013
            InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473979 GO:GO:0005689
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
            CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
            OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
            OMA:VKELWTE EMBL:BC168781 IPI:IPI00364045 RefSeq:NP_001102869.1
            RefSeq:XP_214847.2 UniGene:Rn.110465 UniGene:Rn.145735 SMR:B5DES0
            STRING:B5DES0 Ensembl:ENSRNOT00000021221 GeneID:292688
            GeneID:680309 KEGG:rno:292688 KEGG:rno:680309 UCSC:RGD:1593018
            CTD:292688 NextBio:718422 Genevestigator:B5DES0 Uniprot:B5DES0
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>ZFIN|ZDB-GENE-040914-10 [details] [associations]
            symbol:snrpd2 "small nuclear ribonucleoprotein D2
            polypeptide" species:7955 "Danio rerio" [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR027248 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040914-10
            GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
            CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
            OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
            OMA:VKELWTE EMBL:BX663502 EMBL:BC093003 EMBL:AL928979
            IPI:IPI00493498 RefSeq:NP_001017582.1 UniGene:Dr.129790 SMR:Q567V5
            STRING:Q567V5 Ensembl:ENSDART00000059194 GeneID:550244
            KEGG:dre:550244 InParanoid:Q567V5 NextBio:20879507 Uniprot:Q567V5
        Length = 118

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/91 (79%), Positives = 80/91 (87%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:    84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114


>WB|WBGene00004917 [details] [associations]
            symbol:snr-4 species:6239 "Caenorhabditis elegans"
            [GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
            regulation of vulval development" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] InterPro:IPR027248
            INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0040007 GO:GO:0006915 GO:GO:0016477 GO:GO:0008406
            GO:GO:0002119 GO:GO:0032940 GO:GO:0008380 GO:GO:0006397
            GO:GO:0030529 GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920
            SUPFAM:SSF50182 EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096
            PANTHER:PTHR12777 PIR:T20151 RefSeq:NP_506004.1
            ProteinModelPortal:Q18786 SMR:Q18786 DIP:DIP-27008N IntAct:Q18786
            MINT:MINT-1076870 STRING:Q18786 PaxDb:Q18786
            EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
            EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
            UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
            GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
            NextBio:906258 Uniprot:Q18786
        Length = 118

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 72/92 (78%), Positives = 77/92 (83%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F  GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+    
Sbjct:    24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPLA 107
                   V KDRFISKMFLRGDSVIL++KNPLA
Sbjct:    84 KKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115


>UNIPROTKB|Q18786 [details] [associations]
            symbol:snr-4 "Probable small nuclear ribonucleoprotein Sm
            D2" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR027248 INTERPRO:IPR001163
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
            GO:GO:0032940 GO:GO:0008380 GO:GO:0006397 GO:GO:0030529
            GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182
            EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
            PIR:T20151 RefSeq:NP_506004.1 ProteinModelPortal:Q18786 SMR:Q18786
            DIP:DIP-27008N IntAct:Q18786 MINT:MINT-1076870 STRING:Q18786
            PaxDb:Q18786 EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
            EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
            UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
            GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
            NextBio:906258 Uniprot:Q18786
        Length = 118

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 72/92 (78%), Positives = 77/92 (83%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F  GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P+    
Sbjct:    24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPLA 107
                   V KDRFISKMFLRGDSVIL++KNPLA
Sbjct:    84 KKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115


>DICTYBASE|DDB_G0285395 [details] [associations]
            symbol:snrpD2 "putative small nuclear
            ribonucleoprotein D2" species:44689 "Dictyostelium discoideum"
            [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=IEA;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR027248 dictyBase:DDB_G0285395 INTERPRO:IPR001163
            GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0000398
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11096
            PANTHER:PTHR12777 OMA:VKELWTE RefSeq:XP_638255.1 HSSP:P62316
            ProteinModelPortal:Q54NC5 SMR:Q54NC5 STRING:Q54NC5
            EnsemblProtists:DDB0233193 GeneID:8625063 KEGG:ddi:DDB_G0285395
            Uniprot:Q54NC5
        Length = 112

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 69/90 (76%), Positives = 76/90 (84%)

Query:    17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXX 76
             + GPLSIL DSV +NTQVLIN RNNKKLLGRV+AFDRHCNMVLENVKE+WTE P+     
Sbjct:    16 SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGK 75

Query:    77 XXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                 P+NKDRFISKMFLRGDSVIL+LKNPL
Sbjct:    76 KKAKPINKDRFISKMFLRGDSVILVLKNPL 105


>TAIR|locus:2043323 [details] [associations]
            symbol:AT2G47640 "AT2G47640" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
            methylation" evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163
            GO:GO:0005829 EMBL:CP002686 EMBL:CP002685 GO:GO:0005730
            GO:GO:0003676 EMBL:AC005309 GO:GO:0030529 EMBL:AC002535
            InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
            OMA:VKELWTE HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
            RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
            UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
            ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
            PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
            EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
            KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
            InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
            ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
        Length = 109

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 67/90 (74%), Positives = 77/90 (85%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+L  SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE P+    
Sbjct:    19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 78

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNP 105
                  PVN+DRFISKMFLRGDSVI++L+NP
Sbjct:    79 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 108


>TAIR|locus:2081685 [details] [associations]
            symbol:AT3G62840 "AT3G62840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
            evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0005829
            EMBL:CP002686 EMBL:CP002685 GO:GO:0005730 GO:GO:0003676
            EMBL:AC005309 GO:GO:0030529 EMBL:AC002535 InterPro:IPR010920
            SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777 OMA:VKELWTE
            HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
            RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
            UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
            ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
            PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
            EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
            KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
            InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
            ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
        Length = 109

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 67/90 (74%), Positives = 77/90 (85%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+L  SVK+NTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE P+    
Sbjct:    19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 78

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNP 105
                  PVN+DRFISKMFLRGDSVI++L+NP
Sbjct:    79 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 108


>UNIPROTKB|G4NGW0 [details] [associations]
            symbol:MGG_04013 "Small nuclear ribonucleoprotein Sm D2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR027248
            INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 EMBL:CM001236
            InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 KO:K11096 PANTHER:PTHR12777 RefSeq:XP_003719837.1
            ProteinModelPortal:G4NGW0 SMR:G4NGW0 EnsemblFungi:MGG_04013T0
            GeneID:2677446 KEGG:mgr:MGG_04013 Uniprot:G4NGW0
        Length = 117

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 64/87 (73%), Positives = 71/87 (81%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F+ GPLSIL  +V+ +TQVLI+ RNN+KLL RVKAFDRHCNMVLENVKEMWTE PR    
Sbjct:    30 FSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASG 89

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILIL 102
                  PVNKDRFISKMFLRGDSVIL+L
Sbjct:    90 KKGR-PVNKDRFISKMFLRGDSVILVL 115


>UNIPROTKB|E2RTK0 [details] [associations]
            symbol:E2RTK0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0030532 "small nuclear ribonucleoprotein
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR027248 INTERPRO:IPR001163 InterPro:IPR010920
            SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            PANTHER:PTHR12777 GeneTree:ENSGT00390000017608 EMBL:AAEX03008695
            ProteinModelPortal:E2RTK0 Ensembl:ENSCAFT00000000979
            NextBio:20856686 Uniprot:E2RTK0
        Length = 117

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 62/91 (68%), Positives = 72/91 (79%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK+NTQVLINC N KKLLGRVKAF RHCNMVLENVKEMWT+ P++   
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCCN-KKLLGRVKAFKRHCNMVLENVKEMWTKVPKSSKG 82

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                  PVNKD +ISKMFL G S+I++L+  L
Sbjct:    83 KKKSKPVNKDHYISKMFLCGHSIIVVLRKLL 113


>POMBASE|SPAC2C4.03c [details] [associations]
            symbol:smd2 "Sm snRNP core protein Smd2" species:4896
            "Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
            recognition" evidence=IC] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=NAS] [GO:0005685 "U1 snRNP"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
            evidence=ISO] InterPro:IPR027248 PomBase:SPAC2C4.03c
            INTERPRO:IPR001163 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
            GO:GO:0005685 GO:GO:0000395 HOGENOM:HOG000223545 KO:K11096
            PANTHER:PTHR12777 OMA:VKELWTE PIR:T38514 RefSeq:NP_594506.1
            ProteinModelPortal:O14036 SMR:O14036 IntAct:O14036 STRING:O14036
            EnsemblFungi:SPAC2C4.03c.1 GeneID:2542480 KEGG:spo:SPAC2C4.03c
            OrthoDB:EOG43247T NextBio:20803535 Uniprot:O14036
        Length = 115

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/92 (66%), Positives = 71/92 (77%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F+ GPLS+L  +VK++ QVLINCRNNKKLL RVKAFDRH NMVLENVKEMWTE  R    
Sbjct:    25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG 84

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPLA 107
                   +NKDRFISKMFLRGD V+L+++ P A
Sbjct:    85 KKGKA-INKDRFISKMFLRGDGVVLVVRIPSA 115


>GENEDB_PFALCIPARUM|PFB0865w [details] [associations]
            symbol:PFB0865w "small nuclear
            ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
            GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
            SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
            HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
            ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
            EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
            EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
            Uniprot:O96265
        Length = 101

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query:    19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXX 78
             GPL +L++ VK N QVLINCRNN+K+LGRVKAFDRHCN++L  V+E+W E          
Sbjct:    17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVE---VVKDKKK 73

Query:    79 XXPVNKDRFISKMFLRGDSVILILKNP 105
                +NKDR+IS +FLRGDSVILIL+NP
Sbjct:    74 KKKINKDRYISILFLRGDSVILILRNP 100


>UNIPROTKB|O96265 [details] [associations]
            symbol:PFB0865w "Small nuclear ribonucleoprotein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
            splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
            GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
            SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
            HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
            ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
            EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
            EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
            Uniprot:O96265
        Length = 101

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query:    19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXX 78
             GPL +L++ VK N QVLINCRNN+K+LGRVKAFDRHCN++L  V+E+W E          
Sbjct:    17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVE---VVKDKKK 73

Query:    79 XXPVNKDRFISKMFLRGDSVILILKNP 105
                +NKDR+IS +FLRGDSVILIL+NP
Sbjct:    74 KKKINKDRYISILFLRGDSVILILRNP 100


>SGD|S000004265 [details] [associations]
            symbol:SMD2 "Core Sm protein Sm D2" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0003674
            "molecular_function" evidence=ND] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
            evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540
            "U4/U6 x U5 tri-snRNP complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IPI] InterPro:IPR027248
            SGD:S000004265 INTERPRO:IPR001163 GO:GO:0005682 EMBL:BK006945
            GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
            GO:GO:0046540 GO:GO:0071004 EMBL:U17245 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
            HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
            GeneTree:ENSGT00390000017608 OMA:VKELWTE OrthoDB:EOG43247T
            PIR:S69326 RefSeq:NP_013377.1 ProteinModelPortal:Q06217 SMR:Q06217
            DIP:DIP-1421N IntAct:Q06217 MINT:MINT-368970 STRING:Q06217
            PaxDb:Q06217 PRIDE:Q06217 EnsemblFungi:YLR275W GeneID:850981
            KEGG:sce:YLR275W CYGD:YLR275w NextBio:967495 Genevestigator:Q06217
            GermOnline:YLR275W Uniprot:Q06217
        Length = 110

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/91 (54%), Positives = 67/91 (73%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F  GP+S++ D++   T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE       
Sbjct:    26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNV- 84

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                   +N++RFISK+FLRGDSVI++LK P+
Sbjct:    85 ------INRERFISKLFLRGDSVIVVLKTPV 109


>ASPGD|ASPL0000050456 [details] [associations]
            symbol:AN1802 species:162425 "Emericella nidulans"
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
            prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
            [GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] InterPro:IPR027248
            INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676 GO:GO:0030529
            InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 HOGENOM:HOG000223545 PANTHER:PTHR12777 OMA:VKELWTE
            EnsemblFungi:CADANIAT00008450 Uniprot:C8VPG1
        Length = 113

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/77 (64%), Positives = 59/77 (76%)

Query:    17 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXX 76
             + GPLS+L  +V+ NTQVLI+ R+N+KLL RVKAFDRH NMVLENVKEMWTE  +     
Sbjct:    31 SNGPLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR 90

Query:    77 XXXXPVNKDRFISKMFL 93
                 PVNKDRFISKM+L
Sbjct:    91 ----PVNKDRFISKMYL 103


>UNIPROTKB|I3LGQ4 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0071013
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR12777
            GeneTree:ENSGT00390000017608 Ensembl:ENSSSCT00000032366 OMA:SKIAIRQ
            Uniprot:I3LGQ4
        Length = 104

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/91 (56%), Positives = 63/91 (69%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXX 75
             F TGPLS+LT SVK++ +  +N  +  + LG  + F RHCNMVLENVKEMWTE       
Sbjct:    23 FNTGPLSVLTQSVKNSRKGSVNVTHGHQALGGFQGFSRHCNMVLENVKEMWTE------- 75

Query:    76 XXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
                   V KDR+ISKMFLRGDSVI++L+NPL
Sbjct:    76 ------VXKDRYISKMFLRGDSVIVVLRNPL 100


>UNIPROTKB|K7EJB5 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR027248 INTERPRO:IPR001163
            InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AC007191 Pfam:PF01423
            PANTHER:PTHR12777 HGNC:HGNC:11159 Ensembl:ENST00000585392
            Uniprot:K7EJB5
        Length = 54

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query:    57 MVLENVKEMWTEHPRAXXXXXXXXPVNKDRFISKMFLRGDSVILILKNPL 106
             MVLENVKEMWTE P++        PVNKDR+ISKMFLRGDSVI++L+NPL
Sbjct:     1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 50


>UNIPROTKB|K7ERG4 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR027248 InterPro:IPR010920 SUPFAM:SSF50182
            EMBL:AC007191 PANTHER:PTHR12777 HGNC:HGNC:11159
            Ensembl:ENST00000590212 Uniprot:K7ERG4
        Length = 78

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFD 52
             F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFD
Sbjct:    24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60


>WB|WBGene00003077 [details] [associations]
            symbol:lsm-3 species:6239 "Caenorhabditis elegans"
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
            InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
            GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
            EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
            ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
            MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
            EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
            GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
            WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
        Length = 102

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL +L  S+  + +V +  RN+++L GR++AFD+H NMVL  V+E  T            
Sbjct:    17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R +  +F+RGDSVIL+
Sbjct:    75 YKQTK-RVVPMLFVRGDSVILV 95


>GENEDB_PFALCIPARUM|PF08_0049 [details] [associations]
            symbol:PF08_0049 "ribonucleoprotein, putative"
            species:5833 "Plasmodium falciparum" [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
            KO:K12622 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 HOGENOM:HOG000223550 RefSeq:XP_002808862.1
            ProteinModelPortal:C0H4W2 PRIDE:C0H4W2
            EnsemblProtists:PF08_0049:mRNA GeneID:2655500 KEGG:pfa:PF08_0049
            EuPathDB:PlasmoDB:PF3D7_0819900 ProtClustDB:CLSZ2444967
            Uniprot:C0H4W2
        Length = 91

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 22/70 (31%), Positives = 43/70 (61%)

Query:    33 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXXXPVNK-DRFISKM 91
             ++ + C+ +++L+G++ A+D H NM+L NV+E +    +          V K +R +  +
Sbjct:    21 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY----KYSVKENDEETVKKMERNLDMV 76

Query:    92 FLRGDSVILI 101
             F+RGDS+IL+
Sbjct:    77 FVRGDSIILV 86


>FB|FBgn0051184 [details] [associations]
            symbol:LSm3 species:7227 "Drosophila melanogaster"
            [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
            HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
            ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
            PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
            ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
        Length = 103

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + +V +  RN ++L GR+ AFD+H NMVL + +E  T            
Sbjct:    18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD VIL+
Sbjct:    76 YKTAK-RTIPMLFVRGDGVILV 96


>UNIPROTKB|G4N3U5 [details] [associations]
            symbol:MGG_16841 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
            evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
            ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
            KEGG:mgr:MGG_16841 Uniprot:G4N3U5
        Length = 95

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query:    19 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXX 78
             G + +L D V     V +  R +++L GR+ A+D HCN+VL +V+E  T + +       
Sbjct:    14 GLVRLLLDEV-----VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE--THYIQDEDDESE 66

Query:    79 XXPVNKDRFISKMFLRGDSVILI 101
                V+  R +  +F+RGDSV++I
Sbjct:    67 LKTVS--RKLEMLFVRGDSVVMI 87


>UNIPROTKB|F1P280 [details] [associations]
            symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
            IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
        Length = 96

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 68

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    69 YKSTK-RNIPMLFVRGDGVVLV 89


>UNIPROTKB|Q32PE9 [details] [associations]
            symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
            species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
            SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
            UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
            STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
            KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
            GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
            HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
            NextBio:20899271 Uniprot:Q32PE9
        Length = 102

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    75 YKSTK-RNIPMLFVRGDGVVLV 95


>UNIPROTKB|P62310 [details] [associations]
            symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
            process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
            "cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
            binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
            EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
            GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
            SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
            HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
            OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
            EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
            ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
            MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
            PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
            Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
            GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
            neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
            PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
            ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
            Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
        Length = 102

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    75 YKSTK-RNIPMLFVRGDGVVLV 95


>UNIPROTKB|F2Z5S4 [details] [associations]
            symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
            GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
            RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
            SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
            KEGG:ssc:100514071 Uniprot:F2Z5S4
        Length = 102

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    75 YKSTK-RNIPMLFVRGDGVVLV 95


>MGI|MGI:1914928 [details] [associations]
            symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
            (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
            3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
            SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 CTD:27258 eggNOG:NOG236203
            GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
            HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
            EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
            IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
            UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
            STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
            REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
            Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
            UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
            Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
        Length = 102

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    75 YKSTK-RNIPMLFVRGDGVVLV 95


>RGD|1305971 [details] [associations]
            symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
            INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
            EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
            OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
            UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
            GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
            Uniprot:D4A7U6
        Length = 102

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T            
Sbjct:    17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD V+L+
Sbjct:    75 YKSTK-RNIPMLFVRGDGVVLV 95


>TAIR|locus:2014922 [details] [associations]
            symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
            InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
            HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
            PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
            ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
            EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
            TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
            ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
        Length = 97

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 25/82 (30%), Positives = 47/82 (57%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S++   ++ +  R++++L G++ AFD+H NM+L +V+E+ T            
Sbjct:    12 PLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R +  +F+RGD VIL+
Sbjct:    70 VRTTK-RTVPFLFVRGDGVILV 90


>TAIR|locus:2036257 [details] [associations]
            symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
            GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
            KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
            HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
            EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
            ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
            PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
            KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
            PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
            Uniprot:Q9C6K5
        Length = 98

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  R++++L G++ AFD+H NM+L +V+E  T            
Sbjct:    12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                 K R I  +F+RGD VIL+
Sbjct:    70 VRTTK-RTIEFLFVRGDGVILV 90


>ASPGD|ASPL0000060673 [details] [associations]
            symbol:AN10007 species:162425 "Emericella nidulans"
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
            "small nucleolar ribonucleoprotein complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
            tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
            EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
            GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
            Uniprot:C8VRD4
        Length = 96

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%)

Query:    15 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXX 74
             S  + PL ++  S+  +  V +  R +++L GR+ A+D HCN+VL +V+E          
Sbjct:    10 SSVSEPLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDEN 67

Query:    75 XXXXXXPVNKDRFISKMFLRGDSVILI 101
                    + K      +F+RGDSV+LI
Sbjct:    68 EQEHIRTIKKQE--EMLFVRGDSVVLI 92


>DICTYBASE|DDB_G0277107 [details] [associations]
            symbol:lsm3 "putative U6 small nuclear
            ribonucleoparticle-associated protein" species:44689 "Dictyostelium
            discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
            "U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
            ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
            INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
            GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
            GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
            SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
            ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
            GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
            Uniprot:Q1ZXK3
        Length = 97

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/82 (30%), Positives = 45/82 (54%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL ++  S+  + ++ +  R +++L G++ A+D+H NM+L +V+E      +        
Sbjct:    12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                N  R I  +F+RGD VILI
Sbjct:    70 IR-NIKRNIKMLFVRGDGVILI 90


>UNIPROTKB|Q29329 [details] [associations]
            symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
            species:9823 "Sus scrofa" [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=IEA] InterPro:IPR027248
            GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 PANTHER:PTHR12777
            EMBL:F14730 Uniprot:Q29329
        Length = 50

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 19/27 (70%), Positives = 20/27 (74%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNK 42
             F TGPLS+ T S K  TQVLINCRN K
Sbjct:    24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50


>POMBASE|SPBC9B6.05c [details] [associations]
            symbol:lsm3 "U6 snRNP-associated protein Lsm3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
            snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005732 "small nucleolar ribonucleoprotein complex"
            evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046540
            "U4/U6 x U5 tri-snRNP complex" evidence=ISS] PomBase:SPBC9B6.05c
            INTERPRO:IPR001163 GO:GO:0005730 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0006402
            InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540
            GO:GO:0045292 KO:K12622 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
            InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
            HOGENOM:HOG000223550 OMA:MVFVRGD PIR:T40786 RefSeq:NP_595747.1
            PDB:4EMG PDBsum:4EMG ProteinModelPortal:Q9Y7M4 IntAct:Q9Y7M4
            STRING:Q9Y7M4 EnsemblFungi:SPBC9B6.05c.1 GeneID:2540212
            KEGG:spo:SPBC9B6.05c OrthoDB:EOG4JQ77D NextBio:20801344
            Uniprot:Q9Y7M4
        Length = 93

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query:    34 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXXXPVNKDRFISKMFL 93
             V +  R +++L GR+ A+D H NMVL + +E+ T                +  +   +F+
Sbjct:    22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFV 80

Query:    94 RGDSVILI 101
             RGDSVILI
Sbjct:    81 RGDSVILI 88


>DICTYBASE|DDB_G0289453 [details] [associations]
            symbol:DDB_G0289453 "putative small nuclear
            ribonucleoparticle-associated protein" species:44689 "Dictyostelium
            discoideum" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            dictyBase:DDB_G0289453 INTERPRO:IPR001163 EMBL:AAFI02000141
            GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
            Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
            RefSeq:XP_636207.1 EnsemblProtists:DDB0233195 GeneID:8627145
            KEGG:ddi:DDB_G0289453 eggNOG:NOG242281 OMA:DNIHKAR Uniprot:Q54HH8
        Length = 257

 Score = 99 (39.9 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 22/93 (23%), Positives = 48/93 (51%)

Query:    16 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMWTEHPR 71
             F  GPLS+L  +++  +++ +  R    + G  +    AFD+H N++L +V+E +     
Sbjct:   162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221

Query:    72 AXXXXXXXXPVNKD--RFISKMFLRGDSVILIL 102
                      P+     R+  ++F++GD+V+ ++
Sbjct:   222 LPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254


>FB|FBgn0033450 [details] [associations]
            symbol:Lsm11 "Lsm11" species:7227 "Drosophila melanogaster"
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC;IDA]
            [GO:0035363 "histone locus body" evidence=IDA] [GO:0005683 "U7
            snRNP" evidence=NAS] [GO:0016604 "nuclear body" evidence=IDA]
            [GO:0071254 "cytoplasmic U snRNP body" evidence=IDA] [GO:0006398
            "histone mRNA 3'-end processing" evidence=IMP] INTERPRO:IPR001163
            EMBL:AE013599 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000381
            GO:GO:0006398 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            CTD:134353 eggNOG:NOG43702 GO:GO:0071254 GO:GO:0035363
            EMBL:BT044235 RefSeq:NP_610522.1 UniGene:Dm.29452 SMR:A1Z802
            STRING:A1Z802 EnsemblMetazoa:FBtr0088485 GeneID:36013
            KEGG:dme:Dmel_CG12924 UCSC:CG12924-RA FlyBase:FBgn0033450
            InParanoid:A1Z802 OMA:YQNLAAF OrthoDB:EOG4DV43X GenomeRNAi:36013
            NextBio:796341 Uniprot:A1Z802
        Length = 256

 Score = 67 (28.6 bits), Expect = 0.00061, Sum P(2) = 0.00061
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query:    17 ATGPLSILTDSVK---HNT-----QVLINCRNNKKLLGRVK----AFDRHCNMVLENVKE 64
             A GPL +LT  +    HN      +V +  R +  + G V+    AFD+  N++L NV E
Sbjct:   127 AVGPLELLTKCISPASHNESNERRRVRVVIRKHGSVGGSVEGELLAFDKQWNLLLRNVTE 186

Query:    65 MW 66
              W
Sbjct:   187 TW 188

 Score = 42 (19.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query:    62 VKEMWTEHPRAXXXXXXXXPVNKDRFISKMFLRGDSVILI 101
             +KE+    PR          V   R + ++ +RG++V+L+
Sbjct:   211 LKELGITLPRTVVKNLNRKNVEIRRELPQILIRGENVVLV 250


>SGD|S000006434 [details] [associations]
            symbol:LSM3 "Lsm (Like Sm) protein" species:4932
            "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
            evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
            evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
            complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0000956 "nuclear-transcribed mRNA catabolic process"
            evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
            GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
            GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
            SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
            GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
            GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
            eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
            OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
            RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
            SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
            STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
            EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
            CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
            Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
        Length = 89

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query:    20 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAXXXXXXX 79
             PL +L   +  + +V I  R  + L+G ++AFD HCN+VL +  E   +           
Sbjct:     4 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS---- 57

Query:    80 XPVNKDRFISKMFLRGDSVILI 101
                  +R    +F+RGD+V LI
Sbjct:    58 ---ESERRCEMVFIRGDTVTLI 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110        92   0.00091  102 3  11 22  0.44    29
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  42
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  112 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.44u 0.10s 9.54t   Elapsed:  00:00:04
  Total cpu time:  9.44u 0.10s 9.54t   Elapsed:  00:00:04
  Start:  Thu Aug 15 11:21:59 2013   End:  Thu Aug 15 11:22:03 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with SmD2 SmD2 SmD2 Small ribonucleoprotein particle protein SmD2	protein from Drosophila melanogaster	1.7e-36
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Bos taurus	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Bos taurus	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-35
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	2.4e-35
BLAST match view associations BLAST with Snrpd2 Snrpd2 Snrpd2 small nuclear ribonucleoprotein D2	protein from Mus musculus	2.4e-35
BLAST match view associations BLAST with Snrpd2 Snrpd2 Snrpd2 small nuclear ribonucleoprotein D2 polypeptide	gene from Rattus norvegicus	2.4e-35
BLAST match view associations BLAST with snrpd2 snrpd2 snrpd2 small nuclear ribonucleoprotein D2 polypeptide	gene_product from Danio rerio	2.4e-35
BLAST match view associations BLAST with snr-4 snr-4 snr-4	gene from Caenorhabditis elegans	1.5e-33
BLAST match view associations BLAST with snr-4 snr-4 snr-4 Probable small nuclear ribonucleoprotein Sm D2	protein from Caenorhabditis elegans	1.5e-33
BLAST match view associations BLAST with snrpD2 snrpD2 snrpD2 putative small nuclear ribonucleoprotein D2	gene from Dictyostelium discoideum	4.1e-33
BLAST match view associations BLAST with AT2G47640 AT2G47640 AT2G47640	protein from Arabidopsis thaliana	5.2e-33
BLAST match view associations BLAST with AT3G62840 AT3G62840 AT3G62840	protein from Arabidopsis thaliana	5.2e-33
BLAST match view associations BLAST with MGG_04013 MGG_04013 MGG_04013 Small nuclear ribonucleoprotein Sm D2	protein from Magnaporthe oryzae 70-15	1.2e-28
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Uncharacterized protein	protein from Canis lupus familiaris	6.4e-28
BLAST match view associations BLAST with PFB0865w PFB0865w PFB0865w small nuclear ribonucleoprotein, putative	gene from Plasmodium falciparum	2.6e-24
BLAST match view associations BLAST with PFB0865w PFB0865w PFB0865w Small nuclear ribonucleoprotein, putative	protein from Plasmodium falciparum 3D7	2.6e-24
BLAST match view associations BLAST with SMD2 SMD2 SMD2 Core Sm protein Sm D2	gene from Saccharomyces cerevisiae	2.6e-22
BLAST match view associations BLAST with I3LGQ4 I3LGQ4 I3LGQ4 Uncharacterized protein	protein from Sus scrofa	4.4e-20
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	2.3e-14
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Homo sapiens	7.1e-13
BLAST match view associations BLAST with lsm-3 lsm-3 lsm-3	gene from Caenorhabditis elegans	3.3e-08
BLAST match view associations BLAST with PF08_0049 PF08_0049 PF08_0049 ribonucleoprotein, putative	gene from Plasmodium falciparum	2.9e-07
BLAST match view associations BLAST with LSm3 LSm3 LSm3	protein from Drosophila melanogaster	2.6e-06
BLAST match view associations BLAST with MGG_16841 MGG_16841 MGG_16841 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	3.4e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 U6 snRNA-associated Sm-like protein LSm3	protein from Bos taurus	4.3e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 U6 snRNA-associated Sm-like protein LSm3	protein from Homo sapiens	4.3e-06
BLAST match view associations BLAST with LSM3 LSM3 LSM3 Uncharacterized protein	protein from Sus scrofa	4.3e-06
BLAST match view associations BLAST with Lsm3 Lsm3 Lsm3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein from Mus musculus	4.3e-06
BLAST match view associations BLAST with Lsm3 Lsm3 Lsm3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	gene from Rattus norvegicus	4.3e-06
BLAST match view associations BLAST with LSM3A LSM3A LSM3A AT1G21190	protein from Arabidopsis thaliana	4.3e-06
BLAST match view associations BLAST with LSM3B LSM3B LSM3B AT1G76860	protein from Arabidopsis thaliana	9.0e-06
BLAST match view associations BLAST with lsm3 lsm3 lsm3 putative U6 small nuclear ribonucleoparticle-associated protein	gene from Dictyostelium discoideum	2.4e-05
BLAST match view associations BLAST with SNRPD2 SNRPD2 SNRPD2 Small nuclear ribonucleoprotein Sm D2	protein from Sus scrofa	6.3e-05
BLAST match view associations BLAST with DDB_G0289453 DDB_G0289453 DDB_G0289453 putative small nuclear ribonucleoparticle-associated protein	gene from Dictyostelium discoideum	8.7e-05
BLAST match view associations BLAST with Lsm11 Lsm11 Lsm11	protein from Drosophila melanogaster	0.00061
BLAST match view associations BLAST with LSM3 LSM3 LSM3 Lsm (Like Sm) protein	gene from Saccharomyces cerevisiae	0.00072