BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10849
         (267 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
          Length = 472

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 202/296 (68%), Gaps = 38/296 (12%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N+ + C     R++GVKC+RCGDRLLPHEMVMRAQ HV+HLPCFVCV+CCQPLQKGEQ
Sbjct: 168 TRNTKLYCKADYDRIFGVKCSRCGDRLLPHEMVMRAQQHVFHLPCFVCVVCCQPLQKGEQ 227

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F+LR+GQLFCRQDFEKEMYLMQQ+S  DD MLDEN RPRDGRRGPKRPRTILTSAQRRQF
Sbjct: 228 FVLRAGQLFCRQDFEKEMYLMQQASSGDDDMLDENSRPRDGRRGPKRPRTILTSAQRRQF 287

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRR-----QFKSSFEISSMPCRKVG 171
           K+SFEVSPKPCRKV       T  S R   +   NQR      Q K+  +    P  K  
Sbjct: 288 KASFEVSPKPCRKVREALAKETGLSVRVVQVWFQNQRAKMKKIQRKAKQDDGKSPGDKDK 347

Query: 172 V---------------HGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSND 216
                           HGH++ +G    + SDS F SS++PLNPN PYSPDD+Y  HS +
Sbjct: 348 GDKDDKIIKQESPSSDHGHFMGMG----NLSDSHFPSSSQPLNPNIPYSPDDAYPAHSGE 403

Query: 217 SFCSSDISLDESTN---LDEGGSDSLSL-DLGPPSN----HDTMLSSLGQINPIDK 264
           SFCSSDISLD+STN   LDE  SD+LSL +L   S+    HD +  S    NPIDK
Sbjct: 404 SFCSSDISLDDSTNFDHLDEATSDTLSLQNLELQSSHSHQHDNVPPSGSIANPIDK 459


>gi|270002859|gb|EEZ99306.1| LIM homeobox transcription factor 1, beta [Tribolium castaneum]
          Length = 388

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 202/296 (68%), Gaps = 38/296 (12%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N+ + C     R++GVKC+RCGDRLLPHEMVMRAQ HV+HLPCFVCV+CCQPLQKGEQ
Sbjct: 84  TRNTKLYCKADYDRIFGVKCSRCGDRLLPHEMVMRAQQHVFHLPCFVCVVCCQPLQKGEQ 143

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F+LR+GQLFCRQDFEKEMYLMQQ+S  DD MLDEN RPRDGRRGPKRPRTILTSAQRRQF
Sbjct: 144 FVLRAGQLFCRQDFEKEMYLMQQASSGDDDMLDENSRPRDGRRGPKRPRTILTSAQRRQF 203

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRR-----QFKSSFEISSMPCRKVG 171
           K+SFEVSPKPCRKV       T  S R   +   NQR      Q K+  +    P  K  
Sbjct: 204 KASFEVSPKPCRKVREALAKETGLSVRVVQVWFQNQRAKMKKIQRKAKQDDGKSPGDKDK 263

Query: 172 V---------------HGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSND 216
                           HGH++ +G    + SDS F SS++PLNPN PYSPDD+Y  HS +
Sbjct: 264 GDKDDKIIKQESPSSDHGHFMGMG----NLSDSHFPSSSQPLNPNIPYSPDDAYPAHSGE 319

Query: 217 SFCSSDISLDESTN---LDEGGSDSLSL-DLGPPSN----HDTMLSSLGQINPIDK 264
           SFCSSDISLD+STN   LDE  SD+LSL +L   S+    HD +  S    NPIDK
Sbjct: 320 SFCSSDISLDDSTNFDHLDEATSDTLSLQNLELQSSHSHQHDNVPPSGSIANPIDK 375


>gi|357612982|gb|EHJ68260.1| hypothetical protein KGM_10626 [Danaus plexippus]
          Length = 327

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 193/298 (64%), Gaps = 47/298 (15%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N+ + C P   RL+GVKC RCGDRLLP EMVMRAQ +V+H+ CFVCV+CCQPLQKGEQ
Sbjct: 28  TRNAKLYCKPDYDRLFGVKCTRCGDRLLPQEMVMRAQQYVFHIQCFVCVMCCQPLQKGEQ 87

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           +++R+GQ+FCRQDFEKEMYLMQ +   DDM++D++ RPRDGRRGPKRPRTILTSAQRRQF
Sbjct: 88  YVIRAGQIFCRQDFEKEMYLMQHAE--DDMIIDDSERPRDGRRGPKRPRTILTSAQRRQF 145

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGV---- 172
           K+SFEVSPKPCRKV       T  S R   +   NQR + K     +     K       
Sbjct: 146 KASFEVSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQEGDKNNDKDKD 205

Query: 173 --------------HGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSF 218
                         HG+YL L        D+ +++S++PLNPN PYSPDD Y  HS DSF
Sbjct: 206 KDEKSIKQESPSSEHGNYLGL--------DNSYSASSQPLNPNLPYSPDD-YPAHSGDSF 256

Query: 219 CSSDISLDEST--NLDEGGSDSLSLD---------LGPPSNHDTM-LSSLGQINPIDK 264
           CSSDISLD S    LDEG SD++SL           G  S+H+ + L +   +NPIDK
Sbjct: 257 CSSDISLDGSNFDQLDEGTSDTMSLQNLEVPHLPHHGNHSSHEPLNLGTGAVVNPIDK 314


>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
 gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
          Length = 389

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/256 (53%), Positives = 171/256 (66%), Gaps = 35/256 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKC+RCGDR+LPHE+VMRAQ  V+HL CF C+ C Q LQKGEQF+L++GQLFCR D
Sbjct: 82  RIFGVKCSRCGDRILPHELVMRAQHLVFHLQCFCCIACGQHLQKGEQFVLKAGQLFCRPD 141

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           FEKE+YL+  S   +D+ LD+  R RDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCRK
Sbjct: 142 FEKEIYLL-HSPTGEDLDLDDGIRHRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRK 200

Query: 136 V------STMNSKRAKNILTPNQRRQFK--------------------SSFEISSMPCRK 169
           V       T  S R   +   NQR + K                     S ++ S    +
Sbjct: 201 VREALAKETGLSVRVVQVWFQNQRAKVKKIQRKAKQEQDKGLDKDKDEKSIKVESPDSDQ 260

Query: 170 VGVHGHYLSL-GMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES 228
           V    HYL L G++ QD+  +  +S+   +NP  P+SP+D+Y  +SNDSFCSSDISLD S
Sbjct: 261 V----HYLGLSGLNYQDNDTTTASSAQSSVNPIIPFSPEDNYHTNSNDSFCSSDISLDGS 316

Query: 229 T---NLDEGGSDSLSL 241
           T    LDEGGSDSLS+
Sbjct: 317 TQFEGLDEGGSDSLSV 332


>gi|328715997|ref|XP_001946565.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
           [Acyrthosiphon pisum]
          Length = 407

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 174/267 (65%), Gaps = 40/267 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQ-SHVYHLPCFVCVICCQPLQKGEQFILRSG--QLFC 72
           RL+GVKC RCG+ L   E+VMRA  SHVYH+ CF CV C QPLQKG+Q+++++G  QLFC
Sbjct: 86  RLFGVKCGRCGEPLGARELVMRAGPSHVYHVGCFACVACMQPLQKGQQYVVKAGGGQLFC 145

Query: 73  RQDFEKEMYLMQQS----SPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEV 128
           R DFEKE++LMQQ+     P D + LDENCRPRDGRRGPKRPRTILTS QRRQFK+SFEV
Sbjct: 146 RTDFEKEIFLMQQTVGSPQPDDSLTLDENCRPRDGRRGPKRPRTILTSVQRRQFKASFEV 205

Query: 129 SPKPCRKV------STMNSKRAKNILTPNQRRQFK-----------------------SS 159
           SPKPCRKV       T  S R   +   NQR + K                       + 
Sbjct: 206 SPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKSKQDDKNTNNNNANNTDKNE 265

Query: 160 FEISSMPCRKVGVHGHYLSLG-MSLQDSSDSIFASSTKPLNPNHPYSPDDSYAM-HSNDS 217
            E ++     V    HYLSL  +S+ DSSDS + +S +PLNPN PYSP+ +Y   HS DS
Sbjct: 266 TEHATNTTSSVCSGDHYLSLSTLSMHDSSDSNYQNS-QPLNPNIPYSPEGTYTGDHSVDS 324

Query: 218 FCSSDISLDESTN-LDEGGSDSLSLDL 243
           FCSSD+SLD ST   DE GSD++SLDL
Sbjct: 325 FCSSDVSLDGSTTAADEIGSDTMSLDL 351


>gi|307204532|gb|EFN83212.1| LIM homeobox transcription factor 1 beta [Harpegnathos saltator]
          Length = 402

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/247 (50%), Positives = 160/247 (64%), Gaps = 25/247 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +++GVKCARC +++   ++VMR  S V+H+ CF+C +C QPL +G  FILR GQ  CR+D
Sbjct: 112 KIFGVKCARCMEKISCSDLVMRVASLVFHVECFMCCMCGQPLPRGAHFILRQGQPICRRD 171

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           FE E+YL   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCRK
Sbjct: 172 FEHELYL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRK 227

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 228 VREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 287

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEGG 235
           L+  ++++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD +    D G 
Sbjct: 288 LN-ALNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLDGTEAGFDIGE 346

Query: 236 SDSLSLD 242
           +D    D
Sbjct: 347 NDGGGAD 353


>gi|350402518|ref|XP_003486514.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
           impatiens]
          Length = 402

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 151/230 (65%), Gaps = 24/230 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKCARC +++   + V+RA   V+H+ CF C +C QPL  G Q+ LR GQ  CR+D
Sbjct: 111 RIFGVKCARCMEKISCSDFVLRAPGLVFHVECFACCMCGQPLLPGTQYFLRQGQPICRRD 170

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           +E E+YL   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK++FEVSPKPCRK
Sbjct: 171 YEHELYL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKAAFEVSPKPCRK 226

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 227 VREALAKETGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 286

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLD 226
           L+  M+++D   S F SST+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD
Sbjct: 287 LN-AMNMRDGESSSFPSSTQPLNPNNPYSPDDAYPGHSGESFCSSDLSLD 335


>gi|340711972|ref|XP_003394539.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
           terrestris]
          Length = 402

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 151/230 (65%), Gaps = 24/230 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKCARC +++   + V+RA   V+H+ CF C +C QPL  G Q+ LR GQ  CR+D
Sbjct: 111 RIFGVKCARCMEKISCSDFVLRAPGLVFHVECFACCMCGQPLLPGTQYFLRQGQPICRRD 170

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           +E E+YL   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK++FEVSPKPCRK
Sbjct: 171 YEHELYL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKAAFEVSPKPCRK 226

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 227 VREALAKETGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 286

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLD 226
           L+  M+++D   S F SST+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD
Sbjct: 287 LN-AMNMRDGESSSFPSSTQPLNPNNPYSPDDAYPGHSGESFCSSDLSLD 335


>gi|383861320|ref|XP_003706134.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Megachile
           rotundata]
          Length = 402

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 24/230 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKCARC +++   + V+R    V+H+ CF C +C QPL  G Q+ LR GQ  CR+D
Sbjct: 111 RIFGVKCARCMEKISCSDFVLRTPGLVFHVECFACCMCGQPLPPGTQYFLRQGQPICRRD 170

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           +E E+YL   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCRK
Sbjct: 171 YEHELYL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRK 226

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 227 VREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 286

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLD 226
           L+  M+++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD
Sbjct: 287 LN-AMNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLD 335


>gi|307189897|gb|EFN74141.1| LIM homeobox transcription factor 1 beta [Camponotus floridanus]
          Length = 402

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 159/248 (64%), Gaps = 26/248 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSH-VYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           R++GVKCARC +++   ++VMR  S  V+H+ CF C +C QPL +G  +ILR GQ  CR+
Sbjct: 111 RIFGVKCARCMEKISCSDLVMRPVSGLVFHVECFACCMCGQPLPRGAHYILRQGQPICRR 170

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           DFE E++L   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCR
Sbjct: 171 DFEHELFL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCR 226

Query: 135 KV------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGH 175
           KV       T  S R   +   NQR       R+ K+       P  +         H H
Sbjct: 227 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSH 286

Query: 176 YLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEG 234
           YL+  ++++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD +    D G
Sbjct: 287 YLN-ALNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLDGTDGGFDIG 345

Query: 235 GSDSLSLD 242
            +D    D
Sbjct: 346 ENDGGGAD 353


>gi|332025158|gb|EGI65338.1| LIM homeobox transcription factor 1-beta [Acromyrmex echinatior]
          Length = 400

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/248 (49%), Positives = 159/248 (64%), Gaps = 26/248 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSH-VYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           R++GVKCARC +++   ++VMR  S  ++H+ CF C +C QPL +G  +ILR GQ  CR+
Sbjct: 109 RIFGVKCARCMEKISCSDLVMRPVSGLIFHVECFACCMCGQPLPRGAHYILRQGQPICRR 168

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           DFE E++L   +SP DD +LDEN RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCR
Sbjct: 169 DFEHELFL---NSPQDDDLLDEN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCR 224

Query: 135 KV------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGH 175
           KV       T  S R   +   NQR       R+ K+       P  +         H H
Sbjct: 225 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSH 284

Query: 176 YLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEG 234
           YL+  ++++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD +    D G
Sbjct: 285 YLN-ALNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLDGTDGGFDIG 343

Query: 235 GSDSLSLD 242
            +D    D
Sbjct: 344 ENDGGGAD 351


>gi|328779726|ref|XP_001120677.2| PREDICTED: LIM homeobox transcription factor 1-beta-like [Apis
           mellifera]
          Length = 402

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 155/243 (63%), Gaps = 25/243 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKCARC +++   + V+R    V+H+ CF C +C QPL  G  + LR GQ  CR+D
Sbjct: 111 RIFGVKCARCMEKISCSDFVLRTPGSVFHVECFACCMCGQPLPPGAHYFLRQGQPICRRD 170

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           +E E+YL   +SP DD +LD+N RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCRK
Sbjct: 171 YEHELYL---NSPQDDDLLDDN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRK 226

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 227 VREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 286

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEGG 235
           L+  M+++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD +    D G 
Sbjct: 287 LN-AMNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLDGTEAGFDIGE 345

Query: 236 SDS 238
           ++S
Sbjct: 346 NES 348


>gi|380030211|ref|XP_003698747.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-beta-like [Apis florea]
          Length = 402

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 155/243 (63%), Gaps = 25/243 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++GVKCARC +++   + V+R    V+H+ CF C +C QPL  G  + LR GQ  CR+D
Sbjct: 111 RIFGVKCARCMEKISCSDFVLRTPGSVFHVECFACCMCGQPLPPGAHYXLRQGQPICRRD 170

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           +E E+YL   +SP DD +LD+N RPRDGRRGPKRPRTILTSAQRRQFK+SFEVSPKPCRK
Sbjct: 171 YEHELYL---NSPQDDDLLDDN-RPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRK 226

Query: 136 V------STMNSKRAKNILTPNQR-------RQFKSSFEISSMPCRKVGV------HGHY 176
           V       T  S R   +   NQR       R+ K+       P  +         H HY
Sbjct: 227 VREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERRTESPHSDHSHY 286

Query: 177 LSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEGG 235
           L+  M+++D   S F S+T+PLNPN+PYSPDD+Y  HS +SFCSSD+SLD +    D G 
Sbjct: 287 LN-AMNMRDGESSSFPSATQPLNPNNPYSPDDAYPGHSGESFCSSDLSLDGTEAGFDIGE 345

Query: 236 SDS 238
           ++S
Sbjct: 346 NES 348


>gi|170032119|ref|XP_001843930.1| lim homeobox protein [Culex quinquefasciatus]
 gi|167871879|gb|EDS35262.1| lim homeobox protein [Culex quinquefasciatus]
          Length = 400

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/291 (45%), Positives = 166/291 (57%), Gaps = 62/291 (21%)

Query: 3   SHNSHVSCHPRGFRLYGV------------------KCARCGDRLLPHEMVMRAQSHVYH 44
           + N+ V C    +R+YG+                  +C  CG+R+ P+EMVMRA++HV+H
Sbjct: 58  TKNTKVYCKDDYYRIYGLSQLQQKQQNQQHQQKVSRECYGCGERIAPNEMVMRAKNHVFH 117

Query: 45  LPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPS------DDMMLDENC 98
           L CF+C  C +PLQKGE F L+SG+L C+ D EK+MY       S      DD ++++  
Sbjct: 118 LNCFLCYTCNRPLQKGEPFSLKSGKLICQHDLEKDMYSSLHPIHSHHLYGDDDYLMEDGL 177

Query: 99  RPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQ 152
           R RDGRRGPKRPRTILTSAQRRQFK+SF+VSPKPCRKV       T  S R   +   NQ
Sbjct: 178 RSRDGRRGPKRPRTILTSAQRRQFKASFDVSPKPCRKVREALAKDTGLSVRVVQVWFQNQ 237

Query: 153 RRQFK------SSFEISSMPCRK---------------VGVHGHYLSLGMSLQDSSDSIF 191
           R + K       S + SS    K                  HGHYLS+  S        +
Sbjct: 238 RAKMKKISRKSKSNQNSSADADKNHSDKDEKSIKLESPSSDHGHYLSVEGS--------Y 289

Query: 192 ASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES-TNLDEGGSDSLSL 241
            SS +PLNPN PYSPD  +A +S+ S CSSDISLDES  NLDE  SD++SL
Sbjct: 290 GSSGQPLNPNLPYSPD--FAENSDASMCSSDISLDESFDNLDEATSDTMSL 338


>gi|156543668|ref|XP_001605174.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Nasonia
           vitripennis]
          Length = 419

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 156/261 (59%), Gaps = 33/261 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRA--------QSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           R+YG KCARC  ++  +E+VMR            V+H+ CFVC IC   L +G  +ILR 
Sbjct: 112 RIYGAKCARCRQKIESNELVMRVPNCSQSALNGPVFHVDCFVCCICGDQLLRGAHYILRH 171

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
           G   C+++F+ ++Y M  +SP DD +LD++ RPRDGRRGPKRPRTILTS QRRQFK+SFE
Sbjct: 172 GLPLCKREFQNDIYNM--NSPQDDDLLDDS-RPRDGRRGPKRPRTILTSVQRRQFKASFE 228

Query: 128 VSPKPCRKV------STMNSKRAKNILTPNQRR-----QFKSSFEISS--------MPCR 168
           +SPKPCRKV       T  S R   +   NQR      Q K+  E  S         P  
Sbjct: 229 ISPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSDKEPKEERKPES 288

Query: 169 KVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES 228
               H HY++  M  +D   S F S+T+PLNPN+PYSPDD+Y  HS DS+CSSDIS+D +
Sbjct: 289 PHSDHSHYMNAMM--RDGESSNFPSATQPLNPNNPYSPDDAYPGHSGDSYCSSDISIDGT 346

Query: 229 TNLDEGGSDSLSLDLGPPSNH 249
               E G +S S   GP  +H
Sbjct: 347 EAAFELGGESES-GAGPDGSH 366


>gi|195012851|ref|XP_001983760.1| GH15398 [Drosophila grimshawi]
 gi|193897242|gb|EDV96108.1| GH15398 [Drosophila grimshawi]
          Length = 618

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/313 (45%), Positives = 171/313 (54%), Gaps = 57/313 (18%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQS-HVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKCA C   +LP E+VMR  S +V+HLPCFVC  C  PLQKGEQF
Sbjct: 297 NSKLYCKQDYDRLFGVKCAACCHAILPQELVMRPISNYVFHLPCFVCYACRLPLQKGEQF 356

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 357 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 416

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK---------------- 157
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K                
Sbjct: 417 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGGTGGT 476

Query: 158 ----------SSFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPD 207
                     +S +  S    +  V   +    ++     DS FAS  +PLNPN P+SPD
Sbjct: 477 GNGRGNSNANASDDKDSSEKEEKCVKQEHGVDNVNFLSGMDSAFAS--QPLNPNLPFSPD 534

Query: 208 DSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDL--------------GPPSNHDTML 253
           D Y  +SNDSFCSSD+SLD S N D+   D+ SL L                 SN   ML
Sbjct: 535 D-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGHHNQHSNPHDML 592

Query: 254 SSLGQ--INPIDK 264
           ++L    INPIDK
Sbjct: 593 ANLNTSLINPIDK 605


>gi|157118344|ref|XP_001653181.1| lim homeobox protein [Aedes aegypti]
 gi|108883304|gb|EAT47529.1| AAEL001373-PA [Aedes aegypti]
          Length = 391

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/276 (45%), Positives = 158/276 (57%), Gaps = 50/276 (18%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N+ + C    +R+    C  CG+R+ P+EMVMRA++ VYHL CF+C  C +PLQKGE F 
Sbjct: 61  NTKLYCKDDYYRV-SRDCYGCGERIAPNEMVMRAKALVYHLNCFLCYTCNRPLQKGEPFS 119

Query: 65  LRSGQLFCRQDFEKEMY-LMQQSSP---------SDDMMLDENCRPRDGRRGPKRPRTIL 114
           LR+G+L C+ D EK+MY  +    P          DD +L++  R RDGRRGPKRPRTIL
Sbjct: 120 LRAGKLICQHDLEKDMYSTLHPMHPHHNQHTLFSEDDYLLEDGLRSRDGRRGPKRPRTIL 179

Query: 115 TSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK----------- 157
           TS QRRQFK+SF+VSPKPCRKV       T  S R   +   NQR + K           
Sbjct: 180 TSVQRRQFKASFDVSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKISRKSKAAQS 239

Query: 158 ----------SSFEISSMPCRK-VGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSP 206
                     S  E  S+     V  H HYL +        D  F S+++PLNPN PYSP
Sbjct: 240 NGNSDGDKSHSDKEDKSIKLESPVSDHSHYLGV--------DGSFGSTSQPLNPNLPYSP 291

Query: 207 DDSYAMHSNDSFCSSDISLDES-TNLDEGGSDSLSL 241
           D  +  +S+ S CSSDISLDES  NLDE  SD++SL
Sbjct: 292 D--FPENSDASMCSSDISLDESFDNLDEATSDTMSL 325


>gi|195376257|ref|XP_002046913.1| GJ13148 [Drosophila virilis]
 gi|194154071|gb|EDW69255.1| GJ13148 [Drosophila virilis]
          Length = 588

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/314 (44%), Positives = 170/314 (54%), Gaps = 58/314 (18%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKCA C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF
Sbjct: 266 NSKLYCKLDYDRLFGVKCAACCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQF 325

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 326 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 385

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK---------------- 157
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K                
Sbjct: 386 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGTAGGS 445

Query: 158 -----------SSFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSP 206
                      S  + +S    K     H +          DS FAS  +PLNPN P+SP
Sbjct: 446 GNGRGNSSAGASDDKDASEKEEKCVKQEHGVDNVGGFLSGMDSAFAS--QPLNPNLPFSP 503

Query: 207 DDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG--------PPSNHDT------M 252
           DD Y  +SNDSFCSSD+SLD S N D+   D+ SL L            NH+       M
Sbjct: 504 DD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNHNQHSNPHDM 561

Query: 253 LSSLGQ--INPIDK 264
           L++L    INPIDK
Sbjct: 562 LANLNTSLINPIDK 575


>gi|195126146|ref|XP_002007535.1| GI13003 [Drosophila mojavensis]
 gi|193919144|gb|EDW18011.1| GI13003 [Drosophila mojavensis]
          Length = 607

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/314 (44%), Positives = 171/314 (54%), Gaps = 59/314 (18%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKCA C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF
Sbjct: 286 NSKLYCKLDYDRLFGVKCAGCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQF 345

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D +KEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 346 MLRDGQLFCYRHDLDKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 405

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK---------------- 157
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K                
Sbjct: 406 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGATGGS 465

Query: 158 -----------SSFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSP 206
                      S  + +S    K     H +   +      DS FAS  +PLNPN P+SP
Sbjct: 466 GSGRGNSSAGASDDKDASEKDEKCVKQEHGVD-NVGFLGGMDSAFAS--QPLNPNLPFSP 522

Query: 207 DDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG--------PPSNHDT------M 252
           DD Y  +SNDSFCSSD+SLD S N D+   D+ SL L            NH+       M
Sbjct: 523 DD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNHNQHSNPHDM 580

Query: 253 LSSLGQ--INPIDK 264
           L++L    INPIDK
Sbjct: 581 LANLNTSLINPIDK 594


>gi|195440764|ref|XP_002068210.1| GK10148 [Drosophila willistoni]
 gi|194164295|gb|EDW79196.1| GK10148 [Drosophila willistoni]
          Length = 636

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/280 (46%), Positives = 160/280 (57%), Gaps = 52/280 (18%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKCA C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF
Sbjct: 312 NSKLYCKLDYDRLFGVKCAACCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQF 371

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 372 MLRDGQLFCFRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 431

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVH 173
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K   +I     RK   +
Sbjct: 432 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMK---KIQ----RKAKQN 484

Query: 174 GHYLSLGMSLQDSS------------------------------DSIFASSTKPLNPNHP 203
           G   + G    +S+                              D+ FAS  +PLNPN P
Sbjct: 485 GGTTTNGRGNGNSNAADDKDTNEKEEKSIKQELGTESGSYLGGLDNAFAS--QPLNPNLP 542

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDL 243
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L
Sbjct: 543 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSL 580


>gi|194747127|ref|XP_001956004.1| GF24815 [Drosophila ananassae]
 gi|190623286|gb|EDV38810.1| GF24815 [Drosophila ananassae]
          Length = 613

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 167/318 (52%), Gaps = 66/318 (20%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKCA C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 291 NSKLYCKMDYDRLFGVKCASCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 350

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 351 LLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 410

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 411 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGG 470

Query: 166 ---------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
                                 C K  + G        L    DS FAS  +PLNPN P+
Sbjct: 471 SGRGAGNSSATDDKDTNDKEDKCVKQEIGGDSSGYLGGL----DSTFAS--QPLNPNLPF 524

Query: 205 SPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG----------------PPSN 248
           SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L                   SN
Sbjct: 525 SPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSN 582

Query: 249 HDTMLSSLGQ--INPIDK 264
              ML++L    INPIDK
Sbjct: 583 PHDMLANLNNSLINPIDK 600


>gi|195160505|ref|XP_002021116.1| GL25169 [Drosophila persimilis]
 gi|194118229|gb|EDW40272.1| GL25169 [Drosophila persimilis]
          Length = 613

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/306 (44%), Positives = 164/306 (53%), Gaps = 65/306 (21%)

Query: 16  RLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC-R 73
           RL+GVKCA C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF+LR GQLFC R
Sbjct: 303 RLFGVKCASCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYR 362

Query: 74  QDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSP 130
            D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR+QFK+SF+ SP
Sbjct: 363 HDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSP 422

Query: 131 KPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM------------------- 165
           KPCRKV       T  S R   +   NQR + K     +                     
Sbjct: 423 KPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSSGGSGGGRGTGNSSA 482

Query: 166 -----------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHS 214
                       C K  + G        L    D+ FAS  +PLNPN P+SPDD Y  +S
Sbjct: 483 ADDKESNEKEDKCVKQEMGGDSSGYLGGL----DNAFAS--QPLNPNLPFSPDD-YPANS 535

Query: 215 NDSFCSSDISLDESTNLDEGGSDSLSLDLG--------------PPSNHDTMLSSLGQ-- 258
           NDSFCSSD+SLD S N D+   D+ SL L                 SN   ML++L    
Sbjct: 536 NDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSNPHDMLANLNTSL 594

Query: 259 INPIDK 264
           INPIDK
Sbjct: 595 INPIDK 600


>gi|195327101|ref|XP_002030260.1| GM25340 [Drosophila sechellia]
 gi|194119203|gb|EDW41246.1| GM25340 [Drosophila sechellia]
          Length = 637

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/317 (44%), Positives = 169/317 (53%), Gaps = 65/317 (20%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+G+KC+ C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 316 NSKLYCKMDYDRLFGIKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 375

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 376 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 435

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 436 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 495

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 496 GSGRGTGSSSATDDKDTNDKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 549

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLD--EGGSDSLSL------------DLGPPSNH 249
           +SPDD Y  +SNDSFCSSD+SLD S N D  E  +DSLSL            +    SN 
Sbjct: 550 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLEDDADSLSLNNLELQSTSSSGNQHSHSNP 607

Query: 250 DTMLSSLGQ--INPIDK 264
             ML++L    INPIDK
Sbjct: 608 HDMLANLNNSLINPIDK 624


>gi|198464782|ref|XP_001353366.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
 gi|198149877|gb|EAL30873.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
          Length = 620

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/306 (44%), Positives = 164/306 (53%), Gaps = 65/306 (21%)

Query: 16  RLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC-R 73
           RL+GVKCA C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF+LR GQLFC R
Sbjct: 310 RLFGVKCASCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYR 369

Query: 74  QDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSP 130
            D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR+QFK+SF+ SP
Sbjct: 370 HDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSP 429

Query: 131 KPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM------------------- 165
           KPCRKV       T  S R   +   NQR + K     +                     
Sbjct: 430 KPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSSGGSGGGRGTGNSSA 489

Query: 166 -----------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHS 214
                       C K  + G        L    D+ FAS  +PLNPN P+SPDD Y  +S
Sbjct: 490 ADDKESNEKEDKCVKQEMGGDSSGYLGGL----DNAFAS--QPLNPNLPFSPDD-YPANS 542

Query: 215 NDSFCSSDISLDESTNLDEGGSDSLSLDLG--------------PPSNHDTMLSSLGQ-- 258
           NDSFCSSD+SLD S N D+   D+ SL L                 SN   ML++L    
Sbjct: 543 NDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSNPHDMLANLNTSL 601

Query: 259 INPIDK 264
           INPIDK
Sbjct: 602 INPIDK 607


>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
 gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
          Length = 639

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 167/319 (52%), Gaps = 67/319 (21%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKC+ C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 316 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 375

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 376 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 435

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 436 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 495

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 496 GSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 549

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG----------------PPS 247
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L                   S
Sbjct: 550 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHS 607

Query: 248 NHDTMLSSLGQ--INPIDK 264
           N   ML++L    INPIDK
Sbjct: 608 NPHDMLANLNNSLINPIDK 626


>gi|24663250|ref|NP_729801.1| CG32105, isoform B [Drosophila melanogaster]
 gi|23093601|gb|AAF49930.2| CG32105, isoform B [Drosophila melanogaster]
 gi|28316896|gb|AAO39470.1| RE70810p [Drosophila melanogaster]
          Length = 640

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 167/319 (52%), Gaps = 67/319 (21%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKC+ C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 317 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 376

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 377 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 436

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 437 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 496

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 497 GSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 550

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG----------------PPS 247
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L                   S
Sbjct: 551 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHS 608

Query: 248 NHDTMLSSLGQ--INPIDK 264
           N   ML++L    INPIDK
Sbjct: 609 NPHDMLANLNNSLINPIDK 627


>gi|195589796|ref|XP_002084635.1| GD14373 [Drosophila simulans]
 gi|194196644|gb|EDX10220.1| GD14373 [Drosophila simulans]
          Length = 642

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 167/319 (52%), Gaps = 67/319 (21%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKC+ C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 319 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 378

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 379 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 438

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 439 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 498

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 499 GSGRGTGSSSATDDKDTNDKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 552

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLG----------------PPS 247
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L                   S
Sbjct: 553 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHS 610

Query: 248 NHDTMLSSLGQ--INPIDK 264
           N   ML++L    INPIDK
Sbjct: 611 NPHDMLANLNNSLINPIDK 629


>gi|195493808|ref|XP_002094572.1| GE21898 [Drosophila yakuba]
 gi|194180673|gb|EDW94284.1| GE21898 [Drosophila yakuba]
          Length = 642

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/321 (43%), Positives = 167/321 (52%), Gaps = 69/321 (21%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKC+ C   +LP E+VMR   ++V+HLPCFVC  C  PLQKGEQF
Sbjct: 317 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQF 376

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 377 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 436

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 437 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 496

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 497 GSGRGTASSSATDDKDTNEKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 550

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDLGPPSNHDT------------ 251
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L       T            
Sbjct: 551 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHS 608

Query: 252 ------MLSSLGQ--INPIDK 264
                 ML++L    INPIDK
Sbjct: 609 HSNPHDMLANLNNSLINPIDK 629


>gi|194869797|ref|XP_001972523.1| GG15572 [Drosophila erecta]
 gi|190654306|gb|EDV51549.1| GG15572 [Drosophila erecta]
          Length = 652

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/280 (46%), Positives = 154/280 (55%), Gaps = 49/280 (17%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQF 63
           NS + C     RL+GVKC+ C   +LP E+VMR   + V+HLPCFVC  C  PLQKGEQF
Sbjct: 325 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 384

Query: 64  ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CRPRDGRRGPKRPRTILTSAQR 119
           +LR GQLFC R D EKEM+L   ++     + LDE    RPRDGRRGPKRPRTILTS QR
Sbjct: 385 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 444

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM-------- 165
           +QFK+SF+ SPKPCRKV       T  S R   +   NQR + K     +          
Sbjct: 445 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS 504

Query: 166 ----------------------PCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHP 203
                                  C K  + G        L    DS FAS  +PLNPN P
Sbjct: 505 GSGRGTGSSSATDDKDTNEKEDKCVKQELGGDSSGYLGGL----DSTFAS--QPLNPNLP 558

Query: 204 YSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLSLDL 243
           +SPDD Y  +SNDSFCSSD+SLD S N D+   D+ SL L
Sbjct: 559 FSPDD-YPANSNDSFCSSDLSLDGS-NFDQLDDDADSLSL 596


>gi|321473071|gb|EFX84039.1| hypothetical protein DAPPUDRAFT_24627 [Daphnia pulex]
          Length = 225

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 14/169 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHV-YHLPCFVCVICCQPLQKGE 61
           + +  V C     R+YG KC RCG+RL PHE+VMRA S + +HLPCF C IC +PLQKG+
Sbjct: 42  TRSGRVYCRQDYDRVYGAKCGRCGERLYPHELVMRAGSSLAFHLPCFGCFICGRPLQKGD 101

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP------SDDMMLDENCRPR-DGRRGPKRPRTIL 114
           QF++R+GQL CR D EK+++L+Q ++        DD   D++ RPR DGRRGPKRPRTIL
Sbjct: 102 QFVVRAGQLLCRDDLEKDLFLIQSTTNNNNNNNGDDSAADDSSRPRHDGRRGPKRPRTIL 161

Query: 115 TSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           TSAQRRQFK+SFE+SPKPCRKV       T  S R   +   NQR + K
Sbjct: 162 TSAQRRQFKASFEISPKPCRKVREALAKETGLSVRVVQVWFQNQRAKMK 210


>gi|158292633|ref|XP_558527.3| AGAP005137-PA [Anopheles gambiae str. PEST]
 gi|157017083|gb|EAL40471.3| AGAP005137-PA [Anopheles gambiae str. PEST]
          Length = 432

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 159/334 (47%), Gaps = 101/334 (30%)

Query: 3   SHNSHVSCHPRGFRLYGVK-------------------------CARCGDRLLPHEMVMR 37
           + N+ V C    +R++GV                          C  CG+R+ P EMVMR
Sbjct: 60  TKNTKVYCKDDYYRIFGVSSVHQQNQQHHQQHGQQQQQQQHQRDCYGCGERIAPIEMVMR 119

Query: 38  AQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY---------------- 81
           A+  VYHL CF+C  C +PLQKGE F +R+G+L C+ D EK+ Y                
Sbjct: 120 AKHLVYHLHCFLCYTCNRPLQKGEPFSIRAGKLICQHDLEKDFYGSAAAAAAAAAAAAAA 179

Query: 82  -------------------LMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
                                      DD +LD+  R RDGRRGPKRPRTILTSAQRRQF
Sbjct: 180 AMHHHHGGAGAGLGPHLPPAAHLYGDGDDYLLDDGLRTRDGRRGPKRPRTILTSAQRRQF 239

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV------ 170
           K+SF+VSPKPCRKV       T  S R   +   NQR + K     S             
Sbjct: 240 KASFDVSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKILRKSKANANGATDGEKN 299

Query: 171 ---------------GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSN 215
                            H HYL L        DS ++SS++PLNPN PYSPD  +  +S+
Sbjct: 300 HSDKEDKSIKLESPSSDHSHYLGL--------DSSYSSSSQPLNPNLPYSPD--FPDNSD 349

Query: 216 DSFCSSDISLDES-TNLDEGGSDSLS---LDLGP 245
            S CSSDISLDES  N+DE  SD++S   LDL P
Sbjct: 350 ASLCSSDISLDESFDNVDEATSDTMSLQNLDLQP 383


>gi|312370935|gb|EFR19233.1| hypothetical protein AND_22857 [Anopheles darlingi]
          Length = 411

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 144/270 (53%), Gaps = 51/270 (18%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG+R+ P E+VMRA+  VYHL CF+C  C +PLQKGE F +R+G+L C+ D EK+ Y
Sbjct: 72  CYGCGERIAPSELVMRAKHLVYHLHCFLCYTCNRPLQKGEPFSIRAGKLVCQHDLEKDFY 131

Query: 82  ---LMQQSSP------------------------------SDDMMLDENCRPRDGRRGPK 108
               M Q                                  DD +L++  R RDGRRGPK
Sbjct: 132 GAAAMHQHHHGAGAGATGGVTSAGGAGGLHPPLHPVHMYGEDDYLLEDGLRTRDGRRGPK 191

Query: 109 RPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEI 162
           RPRTILTSAQRRQFK+SF+VSPKPCRKV       T  S R   +   +QR + K   +I
Sbjct: 192 RPRTILTSAQRRQFKASFDVSPKPCRKVREALAKDTGLSVRVVQVWFQDQRAKMK---KI 248

Query: 163 SSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSD 222
           S    RK   +G+      +  D  D      +   + +H Y   D++  +S+ S  SSD
Sbjct: 249 S----RKSKSNGNGGDAEKNHSDKDDKSIKLESPSSDHSH-YLGLDNFPDNSDASLYSSD 303

Query: 223 ISLDES-TNLDEGGSDSLS---LDLGPPSN 248
           ISLDE+  N+DE  SD++S   LDL P  N
Sbjct: 304 ISLDENFDNVDETTSDTMSLQNLDLQPSLN 333


>gi|241811703|ref|XP_002416452.1| lim homeobox protein, putative [Ixodes scapularis]
 gi|215510916|gb|EEC20369.1| lim homeobox protein, putative [Ixodes scapularis]
          Length = 155

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 100/151 (66%), Gaps = 11/151 (7%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+GVKCA C   + P E+VMRA  HV+H+ CF CV+C + LQKG+QF++RSG+L+CR DF
Sbjct: 1   LFGVKCAGCLGSIAPSELVMRALEHVFHVACFACVVCGRTLQKGDQFVVRSGRLYCRPDF 60

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
           EKEM L+    P          RP DGRRGPKRPRTILT+AQRR FK+SFE+S KPCRKV
Sbjct: 61  EKEMALV----PGAGQNGQPAVRP-DGRRGPKRPRTILTTAQRRAFKASFEISQKPCRKV 115

Query: 137 ------STMNSKRAKNILTPNQRRQFKSSFE 161
                  T  S R   +   NQR + ++  E
Sbjct: 116 RETLAKETGLSVRIVQVWFQNQRAKVRAPLE 146


>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
           [Metaseiulus occidentalis]
          Length = 434

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 115/199 (57%), Gaps = 20/199 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KCA C   + P E+VM+A   VYHL CF+C  C + LQ+G++++LR+G+L+CRQD
Sbjct: 112 RLFGAKCAACTGSIAPAELVMKALDQVYHLSCFLCCTCGRQLQRGDEYVLRNGRLYCRQD 171

Query: 76  FEKEMYLMQQ------------SSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           FEKEM+L+QQ            +            RP DGRRGPKRPRTILT+AQRR FK
Sbjct: 172 FEKEMHLLQQLRGGNGGGGVGGAGVPSVGTPGAGQRP-DGRRGPKRPRTILTTAQRRAFK 230

Query: 124 SSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYL 177
           +SFE+S KPCRKV       T  S R   +   NQR + K          R  G  G   
Sbjct: 231 ASFEISQKPCRKVREALAKETGLSVRIVQVWFQNQRAKLKKIQRKQQQQQRN-GSAGVSR 289

Query: 178 SLGMSLQDSSDSIFASSTK 196
           +   +  DSS+S  ASST+
Sbjct: 290 TTQSNCGDSSESEMASSTR 308


>gi|242007292|ref|XP_002424475.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
           corporis]
 gi|212507893|gb|EEB11737.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
           corporis]
          Length = 396

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 106/164 (64%), Gaps = 10/164 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + +S + C     RLY  KC  C +R+   E+VM+A   V+HL CF+CV+C   LQ+G+Q
Sbjct: 47  TRDSKLYCRLDYDRLYAKKCLGCSERISADELVMKALDSVFHLRCFICVVCGVRLQRGDQ 106

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSD---DMMLDENCRPRDGRRGPKRPRTILTSAQR 119
           F+++ GQLFCR D+EKE+ ++Q  +  D   D +L  + R +DGRRGPKRPRTILT+ QR
Sbjct: 107 FVIKQGQLFCRPDYEKEVEMLQGYAQGDFTCDDLLPSS-RNQDGRRGPKRPRTILTTQQR 165

Query: 120 RQFKSSFEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFK 157
           + FK+SFEVSPKPCRKV    +K      R   +   NQR + K
Sbjct: 166 KAFKASFEVSPKPCRKVREALAKDTGLSVRIVQVWFQNQRAKMK 209


>gi|270002858|gb|EEZ99305.1| LIM homeobox transcription factor 1, beta 2 [Tribolium castaneum]
          Length = 353

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 4/141 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           +S + C     RL+  KC  C +R+ P E+VMRA  +++HL CFVCV+C   LQKG+ ++
Sbjct: 41  DSKLYCRLDYDRLFVKKCLACSERIAPEELVMRASENIFHLRCFVCVVCGIRLQKGDLYV 100

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDE---NCRPRDGRRGPKRPRTILTSAQRRQ 121
           ++ GQLFCR D+EKE+ +MQ      + + DE   + R  DGRRGPKRPRTILT+ QRR 
Sbjct: 101 IKQGQLFCRIDYEKEVEMMQGFGHG-EFICDELLPSSRAHDGRRGPKRPRTILTTQQRRA 159

Query: 122 FKSSFEVSPKPCRKVSTMNSK 142
           FK+SFEVSPKPCRKV    +K
Sbjct: 160 FKASFEVSPKPCRKVREALAK 180


>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
          Length = 352

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 106/167 (63%), Gaps = 17/167 (10%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C     RLY  +C+ C   +  +E+VMRA  HV+HL CFVCV C   LQ+G+QF+
Sbjct: 57  NGRLLCKLDYDRLYAARCSACVQTVPSNELVMRAVGHVFHLQCFVCVACGHQLQRGDQFV 116

Query: 65  LRSGQLFCRQDFEKEMYLMQQ-------SSPSDDM-MLDENCRPRDGRRGPKRPRTILTS 116
           ++ GQLFCR DFE+E +LMQ        S+ SD+   +DEN    D ++GPKRPRTILT+
Sbjct: 117 VKDGQLFCRADFERE-FLMQHPDWCSGYSTKSDEESSIDEN--DADNQKGPKRPRTILTT 173

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           +QRR+FK+SFEV+PKPCRK+       T  S R   +   NQR + K
Sbjct: 174 SQRRKFKASFEVNPKPCRKIRESLASETGLSVRVVQVWFQNQRAKMK 220


>gi|189234898|ref|XP_967153.2| PREDICTED: similar to lim homeobox protein, partial [Tribolium
           castaneum]
          Length = 368

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 4/141 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           +S + C     RL+  KC  C +R+ P E+VMRA  +++HL CFVCV+C   LQKG+ ++
Sbjct: 45  DSKLYCRLDYDRLFVKKCLACSERIAPEELVMRASENIFHLRCFVCVVCGIRLQKGDLYV 104

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDE---NCRPRDGRRGPKRPRTILTSAQRRQ 121
           ++ GQLFCR D+EKE+ +MQ      + + DE   + R  DGRRGPKRPRTILT+ QRR 
Sbjct: 105 IKQGQLFCRIDYEKEVEMMQGFG-HGEFICDELLPSSRAHDGRRGPKRPRTILTTQQRRA 163

Query: 122 FKSSFEVSPKPCRKVSTMNSK 142
           FK+SFEVSPKPCRKV    +K
Sbjct: 164 FKASFEVSPKPCRKVREALAK 184


>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
 gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
          Length = 387

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 9/146 (6%)

Query: 16  RLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           RLYG  +C  CG+++   E+VMRA  +V+HL CF+CV+C   LQKG+Q++++  QLFCR 
Sbjct: 179 RLYGRNRCLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRP 238

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPC 133
           D+EKE+ ++Q  +  DD   D+  + R DGRRGPKRPRTILT+ QRR FK+SFE+SPKPC
Sbjct: 239 DYEKEVEMLQGYN-YDDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEISPKPC 297

Query: 134 RKV------STMNSKRAKNILTPNQR 153
           RK+       T  S R   +   NQR
Sbjct: 298 RKIREGLAKDTGLSIRIVQVWFQNQR 323


>gi|170032117|ref|XP_001843929.1| lim homeobox protein [Culex quinquefasciatus]
 gi|167871878|gb|EDS35261.1| lim homeobox protein [Culex quinquefasciatus]
          Length = 453

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 9/150 (6%)

Query: 16  RLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           RLYG  +C  CG+++   E+VMRA  +V+HL CF+CV+C   LQKG+Q++++  QLFCR 
Sbjct: 59  RLYGRNRCLGCGEKIGADELVMRALDNVFHLKCFICVVCGIRLQKGDQYVIKQSQLFCRP 118

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPC 133
           D+EKE+ + Q  +  DD   D+  + R DGRRGPKRPRTILT+ QRR FK+SFEVSPKPC
Sbjct: 119 DYEKEVEMFQGYN-YDDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEVSPKPC 177

Query: 134 RKV------STMNSKRAKNILTPNQRRQFK 157
           RK+       T  S R   +   NQR + K
Sbjct: 178 RKIREGLAKDTGLSIRIVQVWFQNQRAKMK 207


>gi|312370934|gb|EFR19232.1| hypothetical protein AND_22855 [Anopheles darlingi]
          Length = 919

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 9/149 (6%)

Query: 17  LYG-VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           LYG  +C  CG+++   E+VMRA  +V+HL CF+CV+C   LQKG+Q++++  QLFCR D
Sbjct: 42  LYGRNRCLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRPD 101

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           +EKE+ + Q  S  DD   D+  + R DGRRGPKRPRTILT+ QRR FK+SF++SPKPCR
Sbjct: 102 YEKEVEMFQGYS-YDDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKPCR 160

Query: 135 KV------STMNSKRAKNILTPNQRRQFK 157
           K+       T  S R   +   NQR + K
Sbjct: 161 KIREGLAKDTGLSIRIVQVWFQNQRAKMK 189


>gi|158292635|ref|XP_314022.4| AGAP005138-PA [Anopheles gambiae str. PEST]
 gi|157017084|gb|EAA44525.4| AGAP005138-PA [Anopheles gambiae str. PEST]
          Length = 456

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 101/147 (68%), Gaps = 6/147 (4%)

Query: 16  RLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           RLYG  +C  CG+++   E+VMRA  +V+HL CF+CV+C   LQKG+Q++++  QLFCR 
Sbjct: 203 RLYGRNRCLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQYVIKQSQLFCRP 262

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPC 133
           D+EKE+ + Q  S  DD   D+  + R DGRRGPKRPRTILT+ QRR FK+SF++SPKPC
Sbjct: 263 DYEKEVEMFQGYS-YDDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKPC 321

Query: 134 RKVSTMNSKRAK---NILTPNQRRQFK 157
           RK+    +K       I+   Q++Q K
Sbjct: 322 RKIREGLAKDTGLSIRIVQKIQKKQLK 348


>gi|195012862|ref|XP_001983762.1| GH16074 [Drosophila grimshawi]
 gi|193897244|gb|EDV96110.1| GH16074 [Drosophila grimshawi]
          Length = 583

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 21/162 (12%)

Query: 9   SCHPRGFRLY----------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           SC+ R  +LY            +C  CG ++   E+VMR+Q +++HL CF CV+C   L+
Sbjct: 273 SCYARDGKLYCRLDYERLYLRNRCLGCGHKIAGDELVMRSQENIFHLKCFACVVCGALLK 332

Query: 59  KGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSA 117
           KGEQ++++ GQLFCR D+EKE+ ++Q      D   D+   P+ DGRRGPKRPRTIL + 
Sbjct: 333 KGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDFYGDDLFPPKMDGRRGPKRPRTILNTQ 388

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           QRR FK+SFEVSPKPCRKV       T  S R   +   NQR
Sbjct: 389 QRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQR 430


>gi|195126142|ref|XP_002007533.1| GI12337 [Drosophila mojavensis]
 gi|193919142|gb|EDW18009.1| GI12337 [Drosophila mojavensis]
          Length = 586

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 21/162 (12%)

Query: 9   SCHPRGFRLY----------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           SC+ R  +LY            +C  CG ++   E+VMR+Q +++HL CF CV+C   L+
Sbjct: 267 SCYARDGKLYCRIDYERLYLRNRCLGCGHKIAADELVMRSQENIFHLKCFACVVCGAVLK 326

Query: 59  KGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSA 117
           KGEQ++++ GQLFCR D+EKE+ ++Q      D   D+   P+ DGRRGPKRPRTIL + 
Sbjct: 327 KGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDYYGDDLFPPKMDGRRGPKRPRTILNTQ 382

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           QRR FK+SFEVSPKPCRKV       T  S R   +   NQR
Sbjct: 383 QRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQR 424


>gi|195376251|ref|XP_002046910.1| GJ12228 [Drosophila virilis]
 gi|194154068|gb|EDW69252.1| GJ12228 [Drosophila virilis]
          Length = 564

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 21/162 (12%)

Query: 9   SCHPRGFRLY----------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           SC+ R  +LY            +C  CG ++   E+VMR+Q +++HL CF CV+C   L+
Sbjct: 251 SCYARDGKLYCRIDYERLYLRNRCLGCGHKIAADELVMRSQENIFHLKCFACVVCGALLK 310

Query: 59  KGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSA 117
           KGEQ++++ GQLFCR D+EKE+ ++Q      D   D+   P+ DGRRGPKRPRTIL + 
Sbjct: 311 KGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDYYGDDLFPPKMDGRRGPKRPRTILNTQ 366

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           QRR FK+SFEVSPKPCRKV       T  S R   +   NQR
Sbjct: 367 QRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQR 408


>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
           (Silurana) tropicalis]
          Length = 380

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 97/161 (60%), Gaps = 19/161 (11%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C D + P E VMRAQ +VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGTCLDTITPSEFVMRAQKNVYHLGCFCCCVCDRQLQKGDEFVLKDGQLLCKSD 147

Query: 76  FEKEMYLMQQSSPS-----------DDMMLDENCRPRDGR--RGPKRPRTILTSAQRRQF 122
           +E+E  L+   SP+           D    D++  P DG+  + PKRPRTILT+ QRR F
Sbjct: 148 YERERDLLSLVSPAASDSGKSEDEDDAGKFDDSKGPEDGKDQKRPKRPRTILTTQQRRAF 207

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 248


>gi|195589788|ref|XP_002084631.1| GD12730 [Drosophila simulans]
 gi|194196640|gb|EDX10216.1| GD12730 [Drosophila simulans]
          Length = 527

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 242 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 301

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 302 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 357

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 358 AKDTGLSLRIVQVWFQNQR 376


>gi|195327095|ref|XP_002030257.1| GM24666 [Drosophila sechellia]
 gi|194119200|gb|EDW41243.1| GM24666 [Drosophila sechellia]
          Length = 527

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 242 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 301

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 302 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 357

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 358 AKDTGLSLRIVQVWFQNQR 376


>gi|281366134|ref|NP_648567.2| CG4328 [Drosophila melanogaster]
 gi|211938623|gb|ACJ13208.1| FI06571p [Drosophila melanogaster]
 gi|272455176|gb|AAF49932.2| CG4328 [Drosophila melanogaster]
          Length = 544

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 259 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 318

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 319 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 374

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 375 AKDTGLSLRIVQVWFQNQR 393


>gi|194869786|ref|XP_001972521.1| GG13839 [Drosophila erecta]
 gi|190654304|gb|EDV51547.1| GG13839 [Drosophila erecta]
          Length = 531

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 246 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 305

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 306 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 361

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 362 AKDTGLSLRIVQVWFQNQR 380


>gi|195493804|ref|XP_002094570.1| GE20130 [Drosophila yakuba]
 gi|194180671|gb|EDW94282.1| GE20130 [Drosophila yakuba]
          Length = 540

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 255 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 314

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 315 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 370

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 371 AKDTGLSLRIVQVWFQNQR 389


>gi|145587040|gb|ABP87885.1| IP01439p [Drosophila melanogaster]
          Length = 467

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ 
Sbjct: 182 CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVE 241

Query: 82  LMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV---- 136
           ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV    
Sbjct: 242 MLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENL 297

Query: 137 --STMNSKRAKNILTPNQR 153
              T  S R   +   NQR
Sbjct: 298 AKDTGLSLRIVQVWFQNQR 316


>gi|194747131|ref|XP_001956006.1| GF24989 [Drosophila ananassae]
 gi|190623288|gb|EDV38812.1| GF24989 [Drosophila ananassae]
          Length = 554

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 91/140 (65%), Gaps = 11/140 (7%)

Query: 21  KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
           +C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+
Sbjct: 266 RCLGCGHKIASDELVMRCHENVFHLKCFACVVCGVLLKKGEQYVVKQGQLFCRFDYEKEV 325

Query: 81  YLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV--- 136
            ++Q      D   DE   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV   
Sbjct: 326 EMLQ----GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVREN 381

Query: 137 ---STMNSKRAKNILTPNQR 153
               T  S R   +   NQR
Sbjct: 382 LAKETGLSLRIVQVWFQNQR 401


>gi|198464778|ref|XP_001353365.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
 gi|198149875|gb|EAL30872.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
          Length = 553

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 98/162 (60%), Gaps = 21/162 (12%)

Query: 9   SCHPRGFRLY----------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           SC+ R  +LY            +C  CG ++   E+VMR   +V+HL CF CV+C   L+
Sbjct: 246 SCYAREGKLYCRIDYERLYIRNRCLGCGHKVAADELVMRCHENVFHLKCFACVVCGALLK 305

Query: 59  KGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSA 117
           KGEQ++++ GQLFCR D+EKE+ ++Q      D   D+   P+ DGRRGPKRPRTIL + 
Sbjct: 306 KGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDYYGDDLFPPKLDGRRGPKRPRTILNTQ 361

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           QRR FK+SFEVSPKPCRKV       T  S R   +   NQR
Sbjct: 362 QRRSFKASFEVSPKPCRKVRENLAKETGLSLRIVQVWFQNQR 403


>gi|195160501|ref|XP_002021114.1| GL25001 [Drosophila persimilis]
 gi|194118227|gb|EDW40270.1| GL25001 [Drosophila persimilis]
          Length = 458

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 98/162 (60%), Gaps = 21/162 (12%)

Query: 9   SCHPRGFRLYGV----------KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           SC+ R  +LY            +C  CG ++   E+VMR   +V+HL CF CV+C   L+
Sbjct: 248 SCYAREGKLYCRIDYERLYIRNRCLGCGHKVAADELVMRCHENVFHLKCFACVVCGALLK 307

Query: 59  KGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSA 117
           KGEQ++++ GQLFCR D+EKE+ ++Q      D   D+   P+ DGRRGPKRPRTIL + 
Sbjct: 308 KGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDYYGDDLFPPKLDGRRGPKRPRTILNTQ 363

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           QRR FK+SFEVSPKPCRKV       T  S R   +   NQR
Sbjct: 364 QRRSFKASFEVSPKPCRKVRENLAKETGLSLRIVQVWFQNQR 405


>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
           porcellus]
          Length = 382

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 98/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+         P DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSSQGAGKGTPEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
           scrofa]
          Length = 382

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 98/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+         P DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
           kowalevskii]
          Length = 441

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 96/180 (53%), Gaps = 38/180 (21%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+G KC  C   +  +E+VMRA  +VYHL CF C+IC Q LQKG++F++R  QLFC+ D
Sbjct: 94  KLFGTKCNGCLQSITSNELVMRALCNVYHLRCFNCIICNQRLQKGDEFVVRDNQLFCKVD 153

Query: 76  FEKEMYLMQQSSP--------------------------------SDDMMLDENCRPRDG 103
           +EKE   +Q SSP                                SD    D      DG
Sbjct: 154 YEKEYGSVQLSSPQGHHSEDDSDVIDEGYLDNSVSNTMDDNSGNDSDTNSTDTKGNGGDG 213

Query: 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R+GPKRPRTILT+AQRR FK SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 214 RKGPKRPRTILTTAQRRAFKQSFEVSQKPCRKVRESLAADTGLSVRVVQVWFQNQRAKMK 273


>gi|195440768|ref|XP_002068212.1| GK12807 [Drosophila willistoni]
 gi|194164297|gb|EDW79198.1| GK12807 [Drosophila willistoni]
          Length = 554

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 91/140 (65%), Gaps = 11/140 (7%)

Query: 21  KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
           +C  CG ++   E+VMR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+
Sbjct: 267 RCLGCGHKIAHDELVMRCHENVFHLKCFACVVCGSLLKKGEQYVVKQGQLFCRFDYEKEV 326

Query: 81  YLMQQSSPSDDMMLDENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV--- 136
            ++Q      D   D+   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV   
Sbjct: 327 EMLQ----GYDFYSDDIFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVREN 382

Query: 137 ---STMNSKRAKNILTPNQR 153
               T  S R   +   NQR
Sbjct: 383 LAKETGLSLRIVQVWFQNQR 402


>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
          Length = 374

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL CR D
Sbjct: 80  KLFAVKCGGCFEAIAPNEFVMRAQKTVYHLGCFCCCVCERQLQKGDEFVLKDGQLLCRGD 139

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 140 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQR 199

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 200 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 243


>gi|344236825|gb|EGV92928.1| LIM homeobox transcription factor 1-alpha [Cricetulus griseus]
          Length = 333

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 39  RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 98

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 99  YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 158

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 159 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 202


>gi|440910599|gb|ELR60379.1| LIM homeobox transcription factor 1-alpha, partial [Bos grunniens
           mutus]
          Length = 303

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 9   RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 68

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 69  YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQR 128

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 129 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 172


>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
           africana]
          Length = 382

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 99/167 (59%), Gaps = 28/167 (16%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP-------SDDMMLDEN-CR---------PRDGR--RGPKRPRTILTS 116
           +EKE  L+   SP       SDD   +EN C+           DG+  + PKRPRTILT+
Sbjct: 148 YEKERELLSLVSPAASDSGKSDD---EENLCKSAHGAGKGAAEDGKDHKRPKRPRTILTT 204

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 205 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
           harrisii]
          Length = 382

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 97/166 (58%), Gaps = 26/166 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP-------SDDMMLDENCR---------PRDGR--RGPKRPRTILTSA 117
           +EKE  L+   SP       SDD   D  C+           DG+  + PKRPRTILT+ 
Sbjct: 148 YEKERELLSLVSPVASDSGKSDDE--DSLCKAGHGTGKGVAEDGKDHKRPKRPRTILTTQ 205

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
           [Oryctolagus cuniculus]
          Length = 382

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGTGKGAAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
           familiaris]
          Length = 382

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
           guttata]
          Length = 379

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 25/165 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKCA C + + P E+VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 86  KLFAVKCAGCLEPIAPSELVMRAQKSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSP-------SDDMMLDENCR--------PRDGR--RGPKRPRTILTSAQ 118
           +EKE  L+   SP       SDD   D  C+          DG+  + PKRPRTILT+ Q
Sbjct: 146 YEKERELLSLVSPALSDSGKSDDE--DSICKLGQASGKGAEDGKDHKRPKRPRTILTTQQ 203

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 204 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 248


>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
           caballus]
          Length = 382

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGTGKGAAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
           garnettii]
          Length = 382

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
          Length = 382

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSVHGAGKGAAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-alpha [Nomascus leucogenys]
          Length = 368

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
           Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
           protein 1; Short=LMX-1
 gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTSEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
           [Cricetulus griseus]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
           [Strongylocentrotus purpuratus]
          Length = 387

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 92/148 (62%), Gaps = 13/148 (8%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+G KC  C   +   E+VMRA S+VYHL CF CV C Q L+KG++F+L+  +L+C++D
Sbjct: 86  KLFGTKCNACFQSIPSSELVMRALSNVYHLRCFTCVTCDQQLKKGDEFVLKENRLYCKED 145

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           + KE  +       D   +      +DGR+GPKRPRTILT++QRR FK+SFEVS KPCRK
Sbjct: 146 YTKEHTV-------DTQKVSSKSSSQDGRKGPKRPRTILTTSQRRAFKASFEVSSKPCRK 198

Query: 136 V------STMNSKRAKNILTPNQRRQFK 157
           V       T  S R   +   NQR + K
Sbjct: 199 VRETLAKETGLSVRVVQVWFQNQRAKMK 226


>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAQGTGKGATEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
 gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
 gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
           Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
           Full=LIM/homeobox protein LMX1A
 gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
 gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
 gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
 gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
           [Ailuropoda melanoleuca]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGATEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
          Length = 382

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
           [Saimiri boliviensis boliviensis]
 gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 382

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
 gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
 gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
           [Macaca mulatta]
 gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
           [Macaca mulatta]
 gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
           troglodytes]
 gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
           troglodytes]
 gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
           jacchus]
 gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
           paniscus]
 gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
           paniscus]
 gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
           [Papio anubis]
 gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
           [Papio anubis]
 gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
           [Gorilla gorilla gorilla]
 gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
           [Gorilla gorilla gorilla]
 gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
           Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
           Full=LIM/homeobox protein LMX1A
 gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
 gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
           sapiens]
 gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
 gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
 gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
 gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
 gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
          Length = 382

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CRPRDG-----------RRGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+   G            + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
          Length = 380

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 25/165 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKCA C + + P E+VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP-------SDDMMLDENCR--------PRDGR--RGPKRPRTILTSAQ 118
           +EKE  L+   SP       SDD   D  C+          +G+  + PKRPRTILT+ Q
Sbjct: 148 YEKERELLSLVSPALSDSGKSDDE--DSVCKMGPASAKGAEEGKDHKRPKRPRTILTTQQ 205

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 250


>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
          Length = 368

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 74  KLFAVKCGGCFEAVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 133

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 134 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGATEDGKDHKRPKRPRTILTTQQR 193

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 194 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 237


>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-alpha-like [Meleagris gallopavo]
          Length = 367

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 25/165 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKCA C + + P E+VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 75  KLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGD 134

Query: 76  FEKEMYLMQQSSP-------SDDMMLDENCR--------PRDGR--RGPKRPRTILTSAQ 118
           +EKE  L+   SP       SDD   D  C+          +G+  + PKRPRTILT+ Q
Sbjct: 135 YEKERELLSLVSPALSDSGKSDDE--DSVCKMGPASAKGAEEGKDHKRPKRPRTILTTQQ 192

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 193 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 237


>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
           norvegicus]
          Length = 263

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 97/164 (59%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + +
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKLR 251


>gi|327290473|ref|XP_003229947.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like, partial
           [Anolis carolinensis]
          Length = 293

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 23/163 (14%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+ VKC+ C + + P + VMRAQ +VYH+ CF C +C + LQKG++F+L+ GQL C  D+
Sbjct: 1   LFAVKCSNCFEAISPSQFVMRAQKNVYHVACFCCGVCEKQLQKGDEFVLKEGQLLCNSDY 60

Query: 77  EKEMYLMQQSSP-------SDDM----MLDENCR-----PRDGRRGPKRPRTILTSAQRR 120
           EKE  L+   SP       S D+     ++E  R      +D +R PKRPRTILT+ QRR
Sbjct: 61  EKECELLSLVSPAASDPGKSSDVENLCKMEEKTRKVSEDTKDHKR-PKRPRTILTTQQRR 119

Query: 121 QFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 120 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKIK 162


>gi|148707230|gb|EDL39177.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
          Length = 352

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 22/166 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSP--SDDMMLDEN---CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP  SD    D+    C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSS 159
           R FK+SFEVS KPCRKV       T  S R   +   NQR + +++
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKAQTN 253


>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
           domestica]
          Length = 382

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 94/164 (57%), Gaps = 22/164 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSPSDDMMLDEN-----CR---------PRDGR--RGPKRPRTILTSAQR 119
           +EKE  L+   SP        +     C+           DG+  + PKRPRTILT+ QR
Sbjct: 148 YEKERELLSLVSPVASDSGKSDDDDSLCKAGHGAGKGVAEDGKDHKRPKRPRTILTTQQR 207

Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 208 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|328723694|ref|XP_001946328.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
           [Acyrthosiphon pisum]
          Length = 415

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 85/138 (61%), Gaps = 9/138 (6%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CGD +   E+VMRA   V+H  CFVCV+C   L  G+Q++++  QLFCR D+EKE+ 
Sbjct: 98  CGSCGDHIAAGELVMRAGECVFHEQCFVCVVCGIRLCTGDQYVIKHSQLFCRPDYEKEVN 157

Query: 82  LMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV----- 136
           +M+     +      N    DGRRGPKRPRTILT+ QRR FK+SFE+SPKPCRKV     
Sbjct: 158 MMRDEINRNTGDWSYN---HDGRRGPKRPRTILTTQQRRAFKASFELSPKPCRKVREGLA 214

Query: 137 -STMNSKRAKNILTPNQR 153
             T  S R   +   NQR
Sbjct: 215 HDTGLSVRIVQVWFQNQR 232


>gi|395505738|ref|XP_003757196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
           [Sarcophilus harrisii]
          Length = 401

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSP--SDDMMLDE---NCRPR-----------DGR--RGPKRPRTILTSA 117
           +EKE  L+   SP  SD +  DE   + +P            DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274


>gi|334311511|ref|XP_003339631.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Monodelphis domestica]
          Length = 401

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSP--SDDMMLDE---NCRPR-----------DGR--RGPKRPRTILTSA 117
           +EKE  L+   SP  SD +  DE   + +P            DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274


>gi|395505734|ref|XP_003757194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Sarcophilus harrisii]
          Length = 394

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSP--SDDMMLDE---NCRPR-----------DGR--RGPKRPRTILTSA 117
           +EKE  L+   SP  SD +  DE   + +P            DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274


>gi|334311509|ref|XP_001366137.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Monodelphis domestica]
          Length = 394

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSP--SDDMMLDE---NCRPR-----------DGR--RGPKRPRTILTSA 117
           +EKE  L+   SP  SD +  DE   + +P            DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274


>gi|395505736|ref|XP_003757195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Sarcophilus harrisii]
          Length = 404

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSP--SDDMMLDE---NCRPR-----------DGR--RGPKRPRTILTSA 117
           +EKE  L+   SP  SD +  DE   + +P            DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274


>gi|351707222|gb|EHB10141.1| LIM homeobox transcription factor 1-beta [Heterocephalus glaber]
          Length = 395

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 125/270 (46%), Gaps = 48/270 (17%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDTKPTKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFE--------I 162
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR +   S           
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETRAAETGLSVRVVQVWFQNQRAKVSDSRAGLGLRGQVE 288

Query: 163 SSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYS--------PDDSYAMHS 214
             +  R  G+   Y  L    Q     I A    P   + P+         P D    + 
Sbjct: 289 EVLSSRMEGMMASYTPLAPPQQ----QIVAMEQSPYGSSDPFQQGLTPPQMPGDHMNPYG 344

Query: 215 NDSF---CSSDISLDESTNLDEGGSDSLSL 241
           NDS      SD SL   ++   G SD  SL
Sbjct: 345 NDSIFHDIDSDTSLTSLSDCFLGSSDVGSL 374


>gi|444721284|gb|ELW62028.1| LIM homeobox transcription factor 1-beta [Tupaia chinensis]
          Length = 471

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 5   RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 64

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 65  YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTT 124

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 125 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 171


>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
          Length = 319

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 6/163 (3%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S N H+ C     +L+  +C+ CG  + PHE+V R  S+ YHLPCF CV C   LQ G +
Sbjct: 55  SKNGHLYCKSDYDKLFRGRCSGCGFSINPHELVRRVYSNTYHLPCFRCVECGHVLQDGNE 114

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F +R GQ+FCR D +KE ++   S   D+          D  R  KRPRTILT++QRR+F
Sbjct: 115 FYIRDGQIFCRYDHDKEFHIPSFSPKVDEDSDSYEDFDLDVDRQAKRPRTILTTSQRRKF 174

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSS 159
           K +FE +PKPCRKV       T  + R   +   NQR + K +
Sbjct: 175 KQAFEANPKPCRKVREQLAAETGLTIRVVQVWFQNQRAKVKKT 217


>gi|66571156|gb|AAY51543.1| IP01440p [Drosophila melanogaster]
          Length = 272

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 82/125 (65%), Gaps = 11/125 (8%)

Query: 36  MRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLD 95
           MR   +V+HL CF CV+C   L+KGEQ++++ GQLFCR D+EKE+ ++Q      D   D
Sbjct: 1   MRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQ----GYDFYGD 56

Query: 96  ENCRPR-DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNIL 148
           E   P+ DGRRGPKRPRTIL + QRR FK+SFEVSPKPCRKV       T  S R   + 
Sbjct: 57  ELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVW 116

Query: 149 TPNQR 153
             NQR
Sbjct: 117 FQNQR 121


>gi|355567904|gb|EHH24245.1| LIM/homeobox protein LMX1B [Macaca mulatta]
          Length = 367

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 74  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 133

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 134 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 193

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 194 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 240


>gi|358414621|ref|XP_003582878.1| PREDICTED: LIM homeobox transcription factor 1-beta [Bos taurus]
          Length = 315

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 25/166 (15%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+
Sbjct: 23  LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 82

Query: 77  EKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTSA 117
           EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+ 
Sbjct: 83  EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 142

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 143 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 188


>gi|3348118|gb|AAC27793.1| LIM homeodomain protein [Mus musculus]
          Length = 372

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|297271296|ref|XP_002800229.1| PREDICTED: LIM homeobox transcription factor 1-beta [Macaca
           mulatta]
          Length = 385

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|440898169|gb|ELR49722.1| LIM homeobox transcription factor 1-beta [Bos grunniens mutus]
          Length = 392

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 99  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 158

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 159 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 218

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 219 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 265


>gi|355763645|gb|EHH62200.1| LIM/homeobox protein LMX1B [Macaca fascicularis]
          Length = 379

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 90  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 149

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 150 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 209

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 210 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 256


>gi|149038965|gb|EDL93185.1| LIM homeobox transcription factor 1 beta [Rattus norvegicus]
          Length = 372

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|29500723|gb|AAO74860.1| LMX1B [Canis lupus familiaris]
          Length = 309

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 27  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 86

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 87  YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 146

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 147 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 193


>gi|255759880|ref|NP_034855.2| LIM homeobox transcription factor 1-beta [Mus musculus]
 gi|109112190|ref|XP_001097412.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Macaca mulatta]
 gi|297685370|ref|XP_002820263.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Pongo abelii]
 gi|395824199|ref|XP_003785358.1| PREDICTED: LIM homeobox transcription factor 1-beta [Otolemur
           garnettii]
 gi|403299811|ref|XP_003940668.1| PREDICTED: LIM homeobox transcription factor 1-beta [Saimiri
           boliviensis boliviensis]
 gi|410979114|ref|XP_003995931.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Felis catus]
 gi|341940912|sp|O88609.2|LMX1B_MOUSE RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
           Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
           Full=LIM/homeobox protein LMX1B
 gi|3132909|gb|AAC39738.1| LIM homeodomain protein LMX1B [Homo sapiens]
 gi|47479658|gb|AAH69601.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
 gi|85567565|gb|AAI12121.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
 gi|109731283|gb|AAI13492.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
 gi|111600533|gb|AAI19170.1| LIM homeobox transcription factor 1 beta [Mus musculus]
 gi|116138517|gb|AAI25470.1| LIM homeobox transcription factor 1 beta [Mus musculus]
 gi|119608048|gb|EAW87642.1| LIM homeobox transcription factor 1, beta, isoform CRA_b [Homo
           sapiens]
 gi|148676655|gb|EDL08602.1| LIM homeobox transcription factor 1 beta [Mus musculus]
 gi|312150934|gb|ADQ31979.1| LIM homeobox transcription factor 1, beta [synthetic construct]
 gi|313882992|gb|ADR82982.1| LIM homeobox transcription factor 1, beta (LMX1B) [synthetic
           construct]
          Length = 372

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|219520075|gb|AAI43802.1| LMX1B protein [Homo sapiens]
          Length = 383

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
           familiaris]
          Length = 487

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 194 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 253

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 254 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 313

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 314 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 360


>gi|301761900|ref|XP_002916368.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 406

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|47480835|gb|AAH69588.1| LMX1B protein [Homo sapiens]
          Length = 377

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 84  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 143

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 144 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 203

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 204 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 250


>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
 gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
 gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
 gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
          Length = 373

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 99/182 (54%), Gaps = 34/182 (18%)

Query: 8   VSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           +SC+ R  +LY           KC+ C +++ P E+VMRA   VYHL CF C +C + L 
Sbjct: 67  MSCYSRDHKLYCKHDYQQLFATKCSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLC 126

Query: 59  KGEQFILRSGQLFCRQDFEKEMYL----MQQSSPSDDMMLDENCRPRDGRRG-------- 106
           KG++F+L+ GQL C+ D+E+E  L    +  S  S+D  LD   +P  G  G        
Sbjct: 127 KGDEFVLKEGQLLCKTDYEREKDLASPDLSDSDKSEDEDLD--VKPEKGAGGQGKGSDDS 184

Query: 107 -----PKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQ 155
                PKRPRTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR +
Sbjct: 185 KDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAK 244

Query: 156 FK 157
            K
Sbjct: 245 MK 246


>gi|354507888|ref|XP_003515986.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
           [Cricetulus griseus]
          Length = 243

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 25/166 (15%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+
Sbjct: 43  LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 102

Query: 77  EKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTSA 117
           EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+ 
Sbjct: 103 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 162

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 163 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 208


>gi|293345851|ref|XP_001078699.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Rattus norvegicus]
 gi|293357761|ref|XP_001069713.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Rattus norvegicus]
          Length = 395

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|297685372|ref|XP_002820264.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Pongo abelii]
          Length = 383

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|292494911|ref|NP_002307.2| LIM homeobox transcription factor 1-beta isoform 1 [Homo sapiens]
 gi|301761898|ref|XP_002916367.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 2
           [Ailuropoda melanoleuca]
 gi|344271898|ref|XP_003407774.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Loxodonta africana]
 gi|306921455|dbj|BAJ17807.1| LIM homeobox transcription factor 1, beta [synthetic construct]
 gi|387541732|gb|AFJ71493.1| LIM homeobox transcription factor 1-beta isoform 1 [Macaca mulatta]
          Length = 395

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|292494915|ref|NP_001167618.1| LIM homeobox transcription factor 1-beta isoform 2 [Homo sapiens]
 gi|301761896|ref|XP_002916366.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 1
           [Ailuropoda melanoleuca]
 gi|344271902|ref|XP_003407776.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
           [Loxodonta africana]
 gi|410979112|ref|XP_003995930.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Felis catus]
 gi|281340079|gb|EFB15663.1| hypothetical protein PANDA_004429 [Ailuropoda melanoleuca]
          Length = 402

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|8247930|sp|O60663.2|LMX1B_HUMAN RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
           Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
           Full=LIM/homeobox protein LMX1B
 gi|3335524|gb|AAC27294.1| LIM homeodomain protein [Homo sapiens]
 gi|119608047|gb|EAW87641.1| LIM homeobox transcription factor 1, beta, isoform CRA_a [Homo
           sapiens]
          Length = 379

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|292494913|ref|NP_001167617.1| LIM homeobox transcription factor 1-beta isoform 3 [Homo sapiens]
          Length = 406

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
          Length = 375

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 99/182 (54%), Gaps = 34/182 (18%)

Query: 8   VSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58
           +SC+ R  +LY           KC+ C +++ P E+VMRA   VYHL CF C +C + L 
Sbjct: 69  MSCYSRDHKLYCKHDYQQLFATKCSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLC 128

Query: 59  KGEQFILRSGQLFCRQDFEKEMYL----MQQSSPSDDMMLDENCRPRDGRRG-------- 106
           KG++F+L+ GQL C+ D+E+E  L    +  S  S+D  LD   +P  G  G        
Sbjct: 129 KGDEFVLKEGQLLCKTDYEREKDLASPDLSDSDKSEDEDLD--VKPEKGAGGQGKGSDDS 186

Query: 107 -----PKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQ 155
                PKRPRTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR +
Sbjct: 187 KDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAK 246

Query: 156 FK 157
            K
Sbjct: 247 MK 248


>gi|410979118|ref|XP_003995933.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 4
           [Felis catus]
          Length = 382

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|417410318|gb|JAA51634.1| Putative lim homeobox transcription factor 1-beta, partial
           [Desmodus rotundus]
          Length = 391

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 105 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 164

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 165 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 224

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 225 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 271


>gi|397473155|ref|XP_003808084.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-beta [Pan paniscus]
          Length = 402

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|417410392|gb|JAA51670.1| Putative lim homeobox transcription factor 1-beta, partial
           [Desmodus rotundus]
          Length = 398

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 105 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 164

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 165 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 224

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 225 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 271


>gi|344271900|ref|XP_003407775.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Loxodonta africana]
          Length = 406

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|410979116|ref|XP_003995932.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
           [Felis catus]
          Length = 406

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 275


>gi|385862228|ref|NP_001245353.1| LIM homeobox transcription factor 1-beta [Sus scrofa]
          Length = 379

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 205

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 252


>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
           jacchus]
          Length = 638

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 345 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 404

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 405 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 464

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 465 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 511


>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
          Length = 1019

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 726 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 785

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 786 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 845

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 846 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 892


>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
          Length = 779

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 95/167 (56%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 486 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 545

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 546 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 605

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 606 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 652


>gi|449478514|ref|XP_002188995.2| PREDICTED: LIM/homeobox protein LMX-1.2-like [Taeniopygia guttata]
          Length = 352

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 24/167 (14%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           FRL+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ 
Sbjct: 60  FRLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKS 119

Query: 75  DFEKEMYLMQQSSPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTS 116
           D+EKE  L+   SP D   +       + +P  G+             R PKRPRTILT+
Sbjct: 120 DYEKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTT 179

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 180 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 226


>gi|348569787|ref|XP_003470679.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Cavia
           porcellus]
          Length = 402

 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 125/277 (45%), Gaps = 55/277 (19%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPTKGQGSQSKGSGDDGKDPRRPKRPRTILTT 228

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKS------------ 158
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K             
Sbjct: 229 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQ 288

Query: 159 ---SFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYS--------PD 207
                    +  R  G+   Y  L    Q     I A    P   + P+         P 
Sbjct: 289 NSQRLGQEVLSSRMEGMMASYTPLAPPQQQ----IVAMEQSPYGSSDPFQQGLTPPQMPG 344

Query: 208 DSYAMHSNDSF---CSSDISLDESTNLDEGGSDSLSL 241
           D    + NDS      SD SL   ++   G SD  SL
Sbjct: 345 DHMNPYGNDSIFHDIDSDTSLTSLSDCFLGSSDVGSL 381


>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
          Length = 375

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 131/291 (45%), Gaps = 54/291 (18%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFATKCSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSD 145

Query: 76  FEKEMYLMQQSSPSD-------DMMLDENCRPRDGR------------RGPKRPRTILTS 116
           +E+E  L+   SP D       D  LD   +P  G             R PKRPRTILT+
Sbjct: 146 YEREKDLLGSVSPDDSDSEKSEDEELD--IKPEKGSGGTGKGDDGKDPRRPKRPRTILTT 203

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKS------------ 158
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K             
Sbjct: 204 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQEQQ 263

Query: 159 ---SFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNH--PYSPDDSYAMH 213
                    M  R  G+   Y  L  + Q         ST P       P  P D    +
Sbjct: 264 NSQRLGQEVMSNRMEGMMNSYTQLAPAQQQMVALENGYSTDPFQQGLTPPQMPGDHMNPY 323

Query: 214 SNDSFCSSDISLDESTNLDEGGSDSLSLDLGPPSNHDTMLSSLGQINPIDK 264
            NDS    DI  D S         SLS      S+  +M + +G  NPID+
Sbjct: 324 GNDSI-FHDIDSDTSLT-------SLSDCFMASSDAGSMQARVG--NPIDR 364


>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
           troglodytes]
          Length = 623

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 25/166 (15%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+
Sbjct: 331 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 390

Query: 77  EKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTSA 117
           EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+ 
Sbjct: 391 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 450

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 451 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 496


>gi|2497672|sp|Q60564.1|LMX1B_MESAU RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
           Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
           Full=LIM/homeobox protein LMX1B
 gi|1432087|gb|AAB62320.1| LIM-homeodomain protein [Mesocricetus auratus]
          Length = 369

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 25/167 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 76  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 135

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPR------------DGR--RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P             DG+  R PKRPRTILT+
Sbjct: 136 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGGGDDGKDPRRPKRPRTILTT 195

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 196 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 242


>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
 gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
 gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
 gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
          Length = 375

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 131/291 (45%), Gaps = 54/291 (18%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFATKCSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSD 145

Query: 76  FEKEMYLMQQSSPSD-------DMMLDENCRPRDGR------------RGPKRPRTILTS 116
           +E+E  L+   SP D       D  LD   +P  G             R PKRPRTILT+
Sbjct: 146 YEREKDLLGSVSPDDSDSEKSEDEELD--IKPEKGSGGTGKGDDGKDPRRPKRPRTILTT 203

Query: 117 AQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKS------------ 158
            QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K             
Sbjct: 204 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQEQQ 263

Query: 159 ---SFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASSTKPLNPNH--PYSPDDSYAMH 213
                    M  R  G+   Y  L  + Q         ST P       P  P D    +
Sbjct: 264 NSQRLGQEVMSNRMEGMMNSYTPLAPAQQQMVALENGYSTDPFQQGLTPPQMPGDHMNPY 323

Query: 214 SNDSFCSSDISLDESTNLDEGGSDSLSLDLGPPSNHDTMLSSLGQINPIDK 264
            NDS    DI  D S         SLS      S+  +M + +G  NPID+
Sbjct: 324 GNDSI-FHDIDSDTSLT-------SLSDCFMASSDAGSMQARVG--NPIDR 364


>gi|332230041|ref|XP_003264195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
           [Nomascus leucogenys]
          Length = 401

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 31/173 (17%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDD-----------MMLDENCRPRDGR--------------RGPKRP 110
           +EKE  L+   SP +             + D   RP  G               R PKRP
Sbjct: 169 YEKEKDLLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRP 228

Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 RTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 281


>gi|332230039|ref|XP_003264194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
           [Nomascus leucogenys]
          Length = 408

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 95/173 (54%), Gaps = 31/173 (17%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDD-----------MMLDENCRPR------------DGR--RGPKRP 110
           +EKE  L+   SP +             + D   RP             DG+  R PKRP
Sbjct: 169 YEKEKDLLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRP 228

Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 RTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 281


>gi|332230043|ref|XP_003264196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
           [Nomascus leucogenys]
          Length = 416

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 31/173 (17%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDD-----------MMLDENCRPRDGR--------------RGPKRP 110
           +EKE  L+   SP +             + D   RP  G               R PKRP
Sbjct: 169 YEKEKDLLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRP 228

Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 RTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 281


>gi|148227168|ref|NP_001083902.1| LIM homeobox transcription factor 1-beta.1 [Xenopus laevis]
 gi|82216057|sp|Q8UVR3.1|LMX1B_XENLA RecName: Full=LIM homeobox transcription factor 1-beta.1; AltName:
           Full=LIM homeobox protein 1b; Short=Xlmx1b
 gi|16974694|gb|AAL32444.1|AF414086_1 LIM homeobox protein 1b [Xenopus laevis]
          Length = 400

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR-------------RGPKRPRTILTSA 117
           +EKE  L+   SP D   +     + + +P  GR             R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSGSPDDSDSVKSDDEEGDVKPGKGRVNQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKIK 274



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 48/189 (25%)

Query: 28  RLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL----- 82
           R +    +MR     +H  C  C +C QPL     F  R  +LFC+QD+++         
Sbjct: 61  RPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYF--RDRKLFCKQDYQQLFAAKCSGC 118

Query: 83  MQQSSPSDDMMLDENCR-----------PRDGRRGPK---RPRTILTSAQRRQFKSSF-- 126
           M++ +P++ +M    C             R  R+G +   +   +L  +   + K     
Sbjct: 119 MEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEKDLLSS 178

Query: 127 ----------------EVSPKPCRKVSTMNSKRAKN---------ILTPNQRRQFKSSFE 161
                           +V P   R      S   K+         ILT  QRR FK+SFE
Sbjct: 179 GSPDDSDSVKSDDEEGDVKPGKGRVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFE 238

Query: 162 ISSMPCRKV 170
           +SS PCRKV
Sbjct: 239 VSSKPCRKV 247


>gi|405971991|gb|EKC36790.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
          Length = 343

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 88/142 (61%), Gaps = 7/142 (4%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           C  CG  ++P E VMRA+ +VYH  CF C+ C Q L++G+   ++ GQLFC  DFEKEM 
Sbjct: 70  CNGCGMFVIPTEFVMRAKGYVYHQQCFNCIECGQQLRQGDHCAIKDGQLFCGIDFEKEMN 129

Query: 82  LMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV----- 136
           +M  S  SD     E+     G+  PKRPRTILT++QRR+FKS+FE++PKPCRKV     
Sbjct: 130 MMALSPRSDGSDSYEDGESDCGKH-PKRPRTILTTSQRRKFKSAFELNPKPCRKVREQLA 188

Query: 137 -STMNSKRAKNILTPNQRRQFK 157
             T  S R   +   NQR + K
Sbjct: 189 AETGLSVRVVQVWFQNQRAKVK 210


>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
           [Oreochromis niloticus]
          Length = 456

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 25/166 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ V+C+ C  ++ P E VMRA   VYHL CF C +C   L KG++F+L+ GQL C+ D
Sbjct: 85  QLFAVECSNCLGKIAPTEFVMRALDSVYHLSCFCCCVCQHQLCKGDEFVLKEGQLLCKTD 144

Query: 76  FEKEMYLMQQSSP----------------SDDMMLDENCRPRDGRR--GPKRPRTILTSA 117
           +E+E  L    SP                S+ ++L   C   D +    PKRPRTILT+ 
Sbjct: 145 YERERTLFNTLSPDITDSDKSEDEDSDVKSEKILLVRKCSD-DSKEPLRPKRPRTILTTP 203

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           Q+R FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 204 QQRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 249


>gi|1145814|gb|AAA84995.1| LIM homeodomain protein [Gallus gallus]
          Length = 377

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 145

Query: 76  FEKEMYLMQQSSPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTSA 117
           +EKE  L+   SP D   +       + +P  G+             R PKRPRTILT+ 
Sbjct: 146 YEKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQ 205

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|449268581|gb|EMC79437.1| LIM/homeobox protein LMX-1.2, partial [Columba livia]
          Length = 291

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 93/165 (56%), Gaps = 24/165 (14%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+
Sbjct: 1   LFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 60

Query: 77  EKEMYLMQQSSPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTSAQ 118
           EKE  L+   SP D   +       + +P  G+             R PKRPRTILT+ Q
Sbjct: 61  EKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVNQGKGSDDGKDPRRPKRPRTILTTQQ 120

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 121 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 165


>gi|45382493|ref|NP_990689.1| LIM/homeobox protein LMX-1.2 [Gallus gallus]
 gi|1708855|sp|P53413.1|LMX1B_CHICK RecName: Full=LIM/homeobox protein LMX-1.2; Short=Homeobox protein
           LMX-1; Short=LIM/homeobox protein 1; Short=LMX
 gi|1050198|gb|AAA96240.1| LIM1 domain bp 172-315, LIM2 domain bp 349-501, homeobox domain bp
           655-831 [Gallus gallus]
          Length = 377

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 145

Query: 76  FEKEMYLMQQSSPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTSA 117
           +EKE  L+   SP D   +       + +P  G+             R PKRPRTILT+ 
Sbjct: 146 YEKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQ 205

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 206 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 251


>gi|432889048|ref|XP_004075119.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
           latipes]
          Length = 357

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 91/165 (55%), Gaps = 21/165 (12%)

Query: 14  GFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
           GF L+  KC+ C +R+   ++V+RA   VYHL CF C IC   L KG++F+L+ GQLFC+
Sbjct: 117 GFGLFSAKCSGCLERIAATDLVIRALERVYHLSCFCCCICEHQLCKGDEFVLKEGQLFCK 176

Query: 74  QDFEKEMYLMQQ------SSPSDDMMLDENCRPRDGRRG---------PKRPRTILTSAQ 118
           +D++KE  L         S  S D    E+       +G         PKRPRTILT+ Q
Sbjct: 177 KDYDKERNLSSTGGDNSDSDKSRDDFEAESEHFVTAVKGSDDNKDPFRPKRPRTILTTQQ 236

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 237 RRTFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 281


>gi|301616967|ref|XP_002937918.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 400

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 92/166 (55%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSPSDDMMLDE----------NCRPRDGR--------RGPKRPRTILTSA 117
           +EKE  L+   SP D   +             C    G+        R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSGSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 48/189 (25%)

Query: 28  RLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL----- 82
           R +    +MR     +H  C  C +C QPL     F  R  +LFC+QD+++         
Sbjct: 61  RPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYF--RDRKLFCKQDYQQLFAAKCSGC 118

Query: 83  MQQSSPSDDMMLDENCR-----------PRDGRRGPK---RPRTILTSAQRRQFKSSF-- 126
           M++ +P++ +M    C             R  R+G +   +   +L  +   + K     
Sbjct: 119 MEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEKDLLSS 178

Query: 127 ----------------EVSPKPCRKVSTMNS---------KRAKNILTPNQRRQFKSSFE 161
                           +V P  C       S         KR + ILT  QRR FK+SFE
Sbjct: 179 GSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFE 238

Query: 162 ISSMPCRKV 170
           +SS PCRKV
Sbjct: 239 VSSKPCRKV 247


>gi|301616969|ref|XP_002937919.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 2 [Xenopus
           (Silurana) tropicalis]
          Length = 393

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 24/166 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168

Query: 76  FEKEMYLMQQSSPSDDMM----------------LDENCRPRDGR--RGPKRPRTILTSA 117
           +EKE  L+   SP D                   +++     DG+  R PKRPRTILT+ 
Sbjct: 169 YEKEKDLLSSGSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQ 228

Query: 118 QRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 274



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 48/189 (25%)

Query: 28  RLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL----- 82
           R +    +MR     +H  C  C +C QPL     F  R  +LFC+QD+++         
Sbjct: 61  RPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYF--RDRKLFCKQDYQQLFAAKCSGC 118

Query: 83  MQQSSPSDDMMLDENCR-----------PRDGRRGPK---RPRTILTSAQRRQFKSSF-- 126
           M++ +P++ +M    C             R  R+G +   +   +L  +   + K     
Sbjct: 119 MEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEKDLLSS 178

Query: 127 ----------------EVSPKPCRKVSTMNS---------KRAKNILTPNQRRQFKSSFE 161
                           +V P  C       S         KR + ILT  QRR FK+SFE
Sbjct: 179 GSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFE 238

Query: 162 ISSMPCRKV 170
           +SS PCRKV
Sbjct: 239 VSSKPCRKV 247


>gi|326910973|ref|XP_003201838.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
           [Meleagris gallopavo]
          Length = 299

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 17/159 (10%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+  KC+ C   + P E++MR   +VYH+ CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 13  RLFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSD 72

Query: 76  FEKEMYLMQQSSPSDDMML---DENCRPRDGR--------RGPKRPRTILTSAQRRQFKS 124
           +EKE  ++   SP+    +   DE+     G+        +  KRPRTILT+ QRR FK+
Sbjct: 73  YEKEKEMLSAISPTPTESVKSEDEDGSHSHGKGSEDSKDHKRSKRPRTILTTQQRRAFKA 132

Query: 125 SFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 133 SFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 171


>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
          Length = 343

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 17/170 (10%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C     +L+  KC+ C   + P E++MR   +VYH+ CF C  C + LQ+G++F+
Sbjct: 47  NRQLYCKHDYEKLFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFV 106

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMML---DENCRPRDGRRGP--------KRPRTI 113
           L+ GQL CR D+EKE  ++   SP+    +   DE+     G+ G         KRPRTI
Sbjct: 107 LKEGQLLCRSDYEKEKEMLSAISPAPTESVKSEDEDGGHSHGKGGEETKDHKRSKRPRTI 166

Query: 114 LTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           LT+ QRR FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 167 LTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 216



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 42/188 (22%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           CA C D  +    ++R     +H  C  C +C QPL        R+ QL+C+ D+EK   
Sbjct: 5   CAGC-DTPISDRFLLRVNERSWHEGCVKCAVCLQPL--AGTCYCRNRQLYCKHDYEKLFQ 61

Query: 82  L-----MQQSSPSDDMM-LDENCR----------PRDGRRGP----KRPRTILTSAQRRQ 121
                 ++  +PS+ +M + EN             R  +RG     K  + +  S   ++
Sbjct: 62  TKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYEKE 121

Query: 122 FKSSFEVSPKPCRKVSTMN-------------------SKRAKNILTPNQRRQFKSSFEI 162
            +    +SP P   V + +                   SKR + ILT  QRR FK+SFE+
Sbjct: 122 KEMLSAISPAPTESVKSEDEDGGHSHGKGGEETKDHKRSKRPRTILTTQQRRAFKASFEV 181

Query: 163 SSMPCRKV 170
           SS PCRKV
Sbjct: 182 SSKPCRKV 189


>gi|432874756|ref|XP_004072577.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
           latipes]
          Length = 398

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 94/165 (56%), Gaps = 23/165 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKVD 168

Query: 76  FEKEMYLMQQSSPSD---------------DMMLDENCRPRDGR--RGPKRPRTILTSAQ 118
           +E+E  L+   SP D               +  +    +  DG+  R PKRPRTILT+ Q
Sbjct: 169 YEREKDLLSSVSPDDSDSEKSDDEELDIKPEKGIGSQGKGDDGKDPRRPKRPRTILTTQQ 228

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 273


>gi|3046880|gb|AAC13544.1| LIM-homeodomain protein LMX1B/LMX1.2 [Homo sapiens]
          Length = 161

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 25/158 (15%)

Query: 25  CGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQ 84
           C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+EKE  L+ 
Sbjct: 1   CMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLS 60

Query: 85  QSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTSAQRRQFKSS 125
             SP +   +     D + +P  G+              R PKRPRTILT+ QRR FK+S
Sbjct: 61  SVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKAS 120

Query: 126 FEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           FEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 121 FEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 158


>gi|348516128|ref|XP_003445591.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
           [Oreochromis niloticus]
          Length = 399

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 94/165 (56%), Gaps = 23/165 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKID 168

Query: 76  FEKEMYLMQQSSPSD---------------DMMLDENCRPRDGR--RGPKRPRTILTSAQ 118
           +E+E  L+   SP D               +  +    +  DG+  R PKRPRTILT+ Q
Sbjct: 169 YEREKDLLSSVSPDDSDSEKSDDEELDIKPEKGIGSQGKGDDGKDPRRPKRPRTILTTQQ 228

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 229 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 273



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 54/208 (25%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
             CH R        C  C  R +    +MR     +H  C  C +C QPL     F  R 
Sbjct: 48  TECHHRSV------CEGC-QRPISDRFLMRVNDSSWHEECLQCTVCQQPLTNSCYF--RE 98

Query: 68  GQLFCRQDFEKEMYL-----MQQSSPSDDMMLDENCR-----------PRDGRRGP---- 107
            +L+C+ D+++         M++ +P++ +M    C             R  R+G     
Sbjct: 99  RKLYCKHDYQQLFATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVL 158

Query: 108 -----------KRPRTIL----TSAQRRQFKSSFEVSPKPCRKVSTMNS----------K 142
                      +R + +L          +     E+  KP + + +             K
Sbjct: 159 KEGQLLCKIDYEREKDLLSSVSPDDSDSEKSDDEELDIKPEKGIGSQGKGDDGKDPRRPK 218

Query: 143 RAKNILTPNQRRQFKSSFEISSMPCRKV 170
           R + ILT  QRR FK+SFE+SS PCRKV
Sbjct: 219 RPRTILTTQQRRAFKASFEVSSKPCRKV 246


>gi|327291350|ref|XP_003230384.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
           [Anolis carolinensis]
          Length = 185

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 93/166 (56%), Gaps = 24/166 (14%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+
Sbjct: 1   LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 60

Query: 77  EKEMYLMQQSSPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTSAQ 118
           EKE  L+   SP D   +       + +P  G+             R PKRPRTILT+ Q
Sbjct: 61  EKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQTNPGKGGDDGKDPRRPKRPRTILTTQQ 120

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKS 158
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K 
Sbjct: 121 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 166


>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
           carolinensis]
          Length = 381

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C     +L+  KC+ C   + P E +MR   +VYH+ CF C  C + LQ+G++F+
Sbjct: 83  NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFV 142

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMML---DENCRPRDGRRGP--------KRPRTI 113
           L+ GQL CR D+EKE  ++   SP+    +   DE+     G+ G         KRPRTI
Sbjct: 143 LKEGQLLCRSDYEKEREMLSAISPAPTESVKSEDEDGNHPHGKTGEEGKDHKRSKRPRTI 202

Query: 114 LTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           LT+ QRR FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 203 LTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 252


>gi|410922082|ref|XP_003974512.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Takifugu
           rubripes]
          Length = 375

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 24/165 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86  QLFATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKFD 145

Query: 76  FEKEMYLMQQSSPSD-----------DMMLDENCR------PRDGRRGPKRPRTILTSAQ 118
           +E+E  L+   SP D           D+  ++          +D RR PKRPRTILT+ Q
Sbjct: 146 YEREKDLLSSVSPDDSDSEKSDDEELDIKQEKGISQGKGDDSKDSRR-PKRPRTILTTQQ 204

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 205 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 249


>gi|345326124|ref|XP_001508297.2| PREDICTED: hypothetical protein LOC100077000 [Ornithorhynchus
           anatinus]
          Length = 553

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 22/138 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 262 QLFAAKCSGCLEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKSD 321

Query: 76  FEKEMYLMQQSSP-------SDDMMLDENCRPRDGR-------------RGPKRPRTILT 115
           +EKE  L+   SP       SDD   D + +P  G+             R PKRPRTILT
Sbjct: 322 YEKEKDLLSSVSPDESDSVKSDDE--DGDVKPTKGQASQGKGSDDGKDPRRPKRPRTILT 379

Query: 116 SAQRRQFKSSFEVSPKPC 133
           + QRR FK+SFEVS KPC
Sbjct: 380 TQQRRAFKASFEVSSKPC 397


>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
           (Silurana) tropicalis]
          Length = 533

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 16/169 (9%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C     +L+  KC  C   +LP E++MR  S+VYH+ CF C  C + L++G++F+
Sbjct: 228 NRQLYCKEDYDKLFATKCNSCLKTVLPSELIMRVLSNVYHVACFFCCECERRLERGDEFV 287

Query: 65  LRSGQLFCRQDFEKEMYLMQQSS--PSDDMM-LDENCRPRDGR-------RGPKRPRTIL 114
           L+ GQL CR D+E+E  ++   S  PS  +   DE+     G+       +  KRPRTIL
Sbjct: 288 LKEGQLLCRSDYEREKEMLSALSLTPSGSVKSEDEDGASLQGKSDEGKDPKRSKRPRTIL 347

Query: 115 TSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           T+ QRR FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 348 TTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 396


>gi|47212495|emb|CAG12709.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 285

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 95/165 (57%), Gaps = 24/165 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 1   RLFATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKFD 60

Query: 76  FEKEMYLMQQSSPSD-----------DMMLDENC------RPRDGRRGPKRPRTILTSAQ 118
           +E+E  L+   SP D           D+  ++          +D RR PKRPRTILT+ Q
Sbjct: 61  YEREKDLLSSVSPDDSDSEKSDDEELDIKQEKGIGQGKGDDSKDSRR-PKRPRTILTTQQ 119

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 120 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 164


>gi|324529696|gb|ADY49033.1| LIM homeobox transcription factor 1-alpha, partial [Ascaris suum]
          Length = 179

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 11/155 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           + HV C     +L+  +CARCG  L P + V R  +  YH  CF CV C  PL+KG+Q++
Sbjct: 29  DGHVYCREDHAQLFSARCARCGITLQPTDFVFRCLNSTYHAQCFSCVYCNHPLKKGDQYL 88

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           +  GQ+ CR D+  E+ L  Q  P     ++++      R+ PKRPRTIL + QRR FK 
Sbjct: 89  ILDGQVICRADY--ELLLCNQPMPHAYFDIEQS---ESNRKTPKRPRTILNTQQRRAFKL 143

Query: 125 SFEVSPKPCRKV------STMNSKRAKNILTPNQR 153
           +FE S KPCRKV       T  S R   +   NQR
Sbjct: 144 AFEKSAKPCRKVREQLAKETGLSVRVVQVWFQNQR 178


>gi|344235434|gb|EGV91537.1| LIM homeobox transcription factor 1-beta [Cricetulus griseus]
          Length = 233

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 25/156 (16%)

Query: 27  DRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQS 86
           +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+EKE  L+   
Sbjct: 2   EKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSV 61

Query: 87  SPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTSAQRRQFKSSFE 127
           SP +   +     D + +P  G+              R PKRPRTILT+ QRR FK+SFE
Sbjct: 62  SPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFE 121

Query: 128 VSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           VS KPCRKV       T  S R   +   NQR + K
Sbjct: 122 VSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 157


>gi|47220025|emb|CAG12173.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 318

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 88/165 (53%), Gaps = 27/165 (16%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+  KC+ C   +   E++MR Q  VYHL CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 12  RLFVRKCSSCLQVIGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEGQLLCRMD 71

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRD-----------------GRRGPKRPRTILTSAQ 118
           +EKE  ++   SP+      E+ +  D                   +  KRPRTILT+ Q
Sbjct: 72  YEKEREMLAAISPTP----TESVKSEDEDGGVGSGGGKGVDDGKEHKRSKRPRTILTTQQ 127

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 128 RRAFKASFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 172


>gi|341898967|gb|EGT54902.1| CBN-LIM-6 protein [Caenorhabditis brenneri]
          Length = 316

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      LYG +C RC   LLP ++V R     YH  CF C+ C  P   G++
Sbjct: 84  SRHGNIYCEQHHQMLYGKRCRRCTAILLPTDIVHRVHYMYYHAHCFSCLSCQGPFNLGDE 143

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +  G++FCR DF+  +   Q +  + D MLDE  R    R+ PKRPRTIL + QRRQF
Sbjct: 144 YHVFDGEVFCRNDFQ-SLCNYQNTISTADPMLDEAVRSDIHRKTPKRPRTILNAQQRRQF 202

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 203 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 243


>gi|339261154|ref|XP_003368046.1| LIM homeobox transcription factor 1 alpha [Trichinella spiralis]
 gi|316964817|gb|EFV49755.1| LIM homeobox transcription factor 1 alpha [Trichinella spiralis]
          Length = 260

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 17/184 (9%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           FR+YG KCA+C   L P + V R+Q  ++H+ CF C IC + LQ G++++ ++ Q+ CR 
Sbjct: 5   FRIYGSKCAKCALPLNPSDFVQRSQDRIFHMNCFGCSICGKLLQPGDEYVRQNEQILCRG 64

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           DFE  ++     +P +D       R    ++  KRPRTILTS QR+ FK+SFEVS KPCR
Sbjct: 65  DFESLVH-----NPYEDAFKLGPFRHGHHKKTLKRPRTILTSHQRKTFKASFEVSAKPCR 119

Query: 135 KVSTMNSKRAKNILTPNQRRQF--KSSFEISSMPCRKVGVHGHYLSL-GMSLQDSSDSIF 191
           KV    +K     +   Q ++   KS ++ SS         GH  +  G   QD  D+I 
Sbjct: 120 KVREALAKETGLSVRVVQMKKLHRKSEYKKSS---------GHEANADGSDGQDKEDAIK 170

Query: 192 ASST 195
             +T
Sbjct: 171 QQAT 174


>gi|426223032|ref|XP_004005683.1| PREDICTED: LIM homeobox transcription factor 1-beta [Ovis aries]
          Length = 405

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 19/137 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 115 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 174

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTILT+
Sbjct: 175 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 234

Query: 117 AQRRQFKSSFEVSPKPC 133
            QRR FK+SFEVS K C
Sbjct: 235 QQRRAFKASFEVSSKLC 251


>gi|339247641|ref|XP_003375454.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
 gi|316971202|gb|EFV55014.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
          Length = 305

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 17/191 (8%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           V C     R+YG KCA+C   L P + V R+Q  ++H+ CF C IC + LQ G++++ ++
Sbjct: 43  VLCRGDYLRIYGSKCAKCALPLNPSDFVQRSQDRIFHMNCFGCSICGKLLQPGDEYVRQN 102

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            Q+ CR DFE  ++     +P +D       R    ++  KRPRTILTS QR+ FK+SFE
Sbjct: 103 EQILCRGDFESLVH-----NPYEDAFKLGPFRHGHHKKTLKRPRTILTSHQRKTFKASFE 157

Query: 128 VSPKPCRKVSTMNSKRAKNILTPNQRRQF--KSSFEISSMPCRKVGVHGHYLSL-GMSLQ 184
           VS KPCRKV    +K     +   Q ++   KS ++ SS         GH  +  G   Q
Sbjct: 158 VSAKPCRKVREALAKETGLSVRVVQMKKLHRKSEYKKSS---------GHEANADGSDGQ 208

Query: 185 DSSDSIFASST 195
           D  D+I   +T
Sbjct: 209 DKEDAIKQQAT 219


>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
           rerio]
          Length = 396

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 19/161 (11%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C   +   E++MR    VYHL CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 113 KLFVRKCSACLQAIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRGD 172

Query: 76  FEKEMYLMQQSSPSDDMML---DENCRPR--------DGR--RGPKRPRTILTSAQRRQF 122
           +EKE  ++   SP+    +   DE             DG+  +  KRPRTILT+ QRR F
Sbjct: 173 YEKEREMLAAISPAPTESVKSEDEEGGGVSVGGKAGDDGKEHKRSKRPRTILTTQQRRAF 232

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 233 KASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 273


>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
           rubripes]
          Length = 376

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 27/165 (16%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C   +   E++MR Q  VYHL CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 85  KLFVRKCSSCLQVIGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEGQLLCRMD 144

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRD-----------------GRRGPKRPRTILTSAQ 118
           +EKE  ++   SP+      E+ +  D                   +  KRPRTILT+ Q
Sbjct: 145 YEKEREMLAAISPTP----TESVKSEDEDGGVGSGGGKGVDDGKEHKRSKRPRTILTTQQ 200

Query: 119 RRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           RR FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 201 RRAFKASFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 245


>gi|326930568|ref|XP_003211418.1| PREDICTED: LIM/homeobox protein LMX-1.2-like [Meleagris gallopavo]
          Length = 281

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 87/155 (56%), Gaps = 24/155 (15%)

Query: 27  DRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQS 86
           +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+EKE  L+   
Sbjct: 2   EKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEKDLLSSV 61

Query: 87  SPSDDMMLDE-----NCRPRDGR-------------RGPKRPRTILTSAQRRQFKSSFEV 128
           SP D   +       + +P  G+             R PKRPRTILT+ QRR FK+SFEV
Sbjct: 62  SPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFEV 121

Query: 129 SPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           S KPCRKV       T  S R   +   NQR + K
Sbjct: 122 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 156


>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
           latipes]
          Length = 348

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 26/163 (15%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC-RQD 75
           L+ V C  C + + P E+VMRA + V+HL CF C +C   L+ G++ IL+ G+L C R+D
Sbjct: 70  LFAVHCGGCAEAISPSELVMRAGAAVFHLSCFTCSVCFHHLKTGDRCILQDGRLLCARED 129

Query: 76  FEKEMYLMQQSSPSDDM--------------MLDENCRPRDGR-RGPKRPRTILTSAQRR 120
           + +    +Q S PS D+              ++D+  R  D   + PKRPRTILT+ QRR
Sbjct: 130 YHQ----LQASPPSSDIGKSGDDEEEEPSAKVMDKPGRSHDQENKRPKRPRTILTTQQRR 185

Query: 121 QFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
            FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 186 TFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 228


>gi|392925293|ref|NP_001256980.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
 gi|351020895|emb|CCD62868.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
          Length = 316

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      LYG +C RC   LLP ++V R     YH  CF C  C +P   G++
Sbjct: 84  SRHGNIYCEHDHQMLYGKRCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDE 143

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +  G++FCR D++        S+P  D +++E  R    R+ PKRPRTIL + QRRQF
Sbjct: 144 YHVFDGEVFCRNDYQSICNFQTISNP--DPLMEEVVRSEIHRKTPKRPRTILNAQQRRQF 201

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 202 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 242


>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
           latipes]
          Length = 398

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 21/162 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C   +   E++MR    VYHL CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 108 KLFVRKCSACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRMD 167

Query: 76  FEKEMYLMQQSSPSDDMMLD--------------ENCRPRDGRRGPKRPRTILTSAQRRQ 121
           +EKE  ++   SP+    +                    ++ +R  KRPRTILT+ QRR 
Sbjct: 168 YEKEREMLAAISPTPTESVKSEDEDGGGGSGSGKGGDESKEHKRS-KRPRTILTTQQRRA 226

Query: 122 FKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           FK+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 227 FKASFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 268


>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
           [Oreochromis niloticus]
          Length = 368

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 19/161 (11%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C   +   E++MR    VYHL CF C  C + LQ+G++F+L+ GQL CR D
Sbjct: 84  KLFVRKCSACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRMD 143

Query: 76  FEKEMYLMQQSSPS-------------DDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           +EKE  ++   SP+                   +        +  KRPRTILT+ QRR F
Sbjct: 144 YEKEREMLAAISPTPTESVKSEDEDGGGGSGGGKGGDEGKEHKRSKRPRTILTTQQRRAF 203

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K+SFEVS KPCRKV       T  + R   +   NQR + K
Sbjct: 204 KASFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMK 244


>gi|392925295|ref|NP_001256981.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
 gi|351020894|emb|CCD62867.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
          Length = 310

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      LYG +C RC   LLP ++V R     YH  CF C  C +P   G++
Sbjct: 84  SRHGNIYCEHDHQMLYGKRCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDE 143

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +  G++FCR D++        S+P  D +++E  R    R+ PKRPRTIL + QRRQF
Sbjct: 144 YHVFDGEVFCRNDYQSICNFQTISNP--DPLMEEVVRSEIHRKTPKRPRTILNAQQRRQF 201

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 202 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 242


>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
           [Oreochromis niloticus]
          Length = 361

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC-RQD 75
           L+ V+CA C + + P E+VMRA + V+HL CF C +C   LQ G++ +LR GQL C R+ 
Sbjct: 71  LFAVRCAGCTEAISPAELVMRAGAAVFHLRCFTCSVCSCRLQTGDRCVLREGQLLCAREG 130

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGR-------------RGPKRPRTILTSAQRRQF 122
           + + +     S        DE      GR             + PKRPRTILT+ QRR F
Sbjct: 131 YHQCLASPSSSETGKSDDEDEEVEEESGRITGRKVKSDDVESKRPKRPRTILTTQQRRTF 190

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 191 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 231


>gi|402592128|gb|EJW86057.1| hypothetical protein WUBG_03029, partial [Wuchereria bancrofti]
          Length = 218

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 78/147 (53%), Gaps = 11/147 (7%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+GVKC RCG  +   + V R  + +YHL CF C  C    +KG+ ++L  GQ+ CR D+
Sbjct: 1   LFGVKCVRCGLPVRSTDYVYRVFASIYHLHCFKCFCCGHLFKKGDHYVLVDGQIICRPDY 60

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
           E    L Q       +  D+N      R+ PKRPRTIL + QR+ FK +FE + KPCRKV
Sbjct: 61  EH--LLCQPPICQSHLYFDQN---DSNRKTPKRPRTILNTQQRKAFKLAFEKTSKPCRKV 115

Query: 137 ------STMNSKRAKNILTPNQRRQFK 157
                  T  S R   +   NQR + K
Sbjct: 116 REQLAKETNLSVRVVQVWFQNQRAKMK 142


>gi|268576445|ref|XP_002643202.1| C. briggsae CBR-LIM-6 protein [Caenorhabditis briggsae]
          Length = 257

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      L+G +C RC   L   ++V R     YH  CF C  C  P   G++
Sbjct: 27  SRHGNIYCEHDHQMLFGKRCRRCMTVLSSTDIVHRVHYMYYHAQCFNCCSCQGPFNLGDE 86

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +  G++FCR D++     M     S + MLD+  +    R+ PKRPRTIL + QRRQF
Sbjct: 87  YHVFDGEVFCRNDYQA----MCDFGTSSESMLDDAVQSEIHRKTPKRPRTILNAQQRRQF 142

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 143 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 183


>gi|308489722|ref|XP_003107054.1| CRE-LIM-6 protein [Caenorhabditis remanei]
 gi|308252942|gb|EFO96894.1| CRE-LIM-6 protein [Caenorhabditis remanei]
          Length = 314

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      L+G +C RC   L P ++V R     YH  CF C  C  P   G++
Sbjct: 84  SRHGNIYCEQDHQMLFGKRCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDE 143

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +   ++FCR D++     +     + + ML++  R    R+ PKRPRTIL + QRRQF
Sbjct: 144 YHVFDSEVFCRNDYQA----ICNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQF 199

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 200 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 240


>gi|258504135|gb|ACV72767.1| LIM-6 [Caenorhabditis remanei]
 gi|258504137|gb|ACV72768.1| LIM-6 [Caenorhabditis remanei]
 gi|258504139|gb|ACV72769.1| LIM-6 [Caenorhabditis remanei]
 gi|258504141|gb|ACV72770.1| LIM-6 [Caenorhabditis remanei]
 gi|258504143|gb|ACV72771.1| LIM-6 [Caenorhabditis remanei]
 gi|258504147|gb|ACV72773.1| LIM-6 [Caenorhabditis remanei]
          Length = 263

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      L+G +C RC   L P ++V R     YH  CF C  C  P   G++
Sbjct: 51  SRHGNIYCEQDHQMLFGKRCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDE 110

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +   ++FCR D++     +     + + ML++  R    R+ PKRPRTIL + QRRQF
Sbjct: 111 YHVFDSEVFCRNDYQ----AICNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQF 166

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 167 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 207


>gi|258504133|gb|ACV72766.1| LIM-6 [Caenorhabditis remanei]
          Length = 263

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      L+G +C RC   L P ++V R     YH  CF C  C  P   G++
Sbjct: 51  SRHGNIYCEQDHQMLFGKRCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDE 110

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +   ++FCR D++     +     + + ML++  R    R+ PKRPRTIL + QRRQF
Sbjct: 111 YHVFDSEVFCRNDYQ----AICNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQF 166

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 167 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 207


>gi|258504145|gb|ACV72772.1| LIM-6 [Caenorhabditis remanei]
          Length = 263

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + ++ C      L+G +C RC   L P ++V R     YH  CF C  C  P   G++
Sbjct: 51  SRHGNIYCEQDHQMLFGKRCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDE 110

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           + +   ++FCR D++     +     + + ML++  R    R+ PKRPRTIL + QRRQF
Sbjct: 111 YHVFDSEVFCRNDYQ----AICNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQF 166

Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           K++FE S KP RKV       T  S R   +   NQR + K
Sbjct: 167 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 207


>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
          Length = 481

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 15/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N+ + C    F+ YG KCA CG  + P ++V RAQ+HVYHL CF C  C + L  G++
Sbjct: 176 ARNNQLYCTEDFFKRYGTKCAGCGQGIPPTQVVRRAQAHVYHLRCFACAACARTLNTGDE 235

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C+ D+E      + S               DG    KRPRT +T+ Q   
Sbjct: 236 FYLMEDGKLVCKPDYEAARAKGEGS--------------LDGDAASKRPRTTITAKQLET 281

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 282 LKSAYSSSPKPARHV 296


>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
          Length = 507

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    ++ YG KCA+C   + P ++V RA  HV+H+ CFVC+IC + L  G++
Sbjct: 166 SRGDFVYCKDDFYKRYGTKCAKCEKVIPPSQVVRRAGGHVFHMDCFVCIICSRTLNTGDE 225

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F  +   QL CR D++   +  Q ++ +D+   DE        +G KRPRT +T+ Q   
Sbjct: 226 FYFVDDNQLVCRSDYDN--FKTQYANCTDETFTDEL---DLENQGIKRPRTTITAKQLET 280

Query: 122 FKSSFEVSPKPCRKV 136
            K+++E SPKP R V
Sbjct: 281 LKTAYENSPKPARHV 295


>gi|410921390|ref|XP_003974166.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
           rubripes]
          Length = 354

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 91/192 (47%), Gaps = 50/192 (26%)

Query: 9   SCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK 59
           SC  RG +LY          V C  C + +   E+VMRA + V+HL CF C +C   LQ 
Sbjct: 44  SCFVRGRKLYCKQDYAELFAVHCGGCAEAISHTELVMRAGAAVFHLHCFTCSVCSCRLQT 103

Query: 60  GEQFILRSGQLFC-RQDFEKEMYLMQQSSPSDDMMLDENC-------------------- 98
           G++ + R GQL C R+D+ + +     +SP+       +C                    
Sbjct: 104 GDRCVFREGQLLCAREDYHRCL-----ASPTSSYT-GTSCDGDDEDEEEEKEEEEESAAA 157

Query: 99  -------RPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                    +D +R PKRPRTILT+ QRR FK+SFEVS KPCRKV       T  S R  
Sbjct: 158 ADRTARTAEQDSKR-PKRPRTILTTQQRRTFKASFEVSSKPCRKVRETLAAETGLSVRVV 216

Query: 146 NILTPNQRRQFK 157
            +   NQR + K
Sbjct: 217 QVWFQNQRAKMK 228


>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
 gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KCA C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 103 ARNGQLFCKDDFFKRYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDE 162

Query: 63  F-ILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
           F ++  G+L C+ D+E    K +YL   S               DG    KRPRT +T+ 
Sbjct: 163 FYLIEDGKLICKPDYEAAKAKGLYLSDGS--------------LDGESSNKRPRTTITAK 208

Query: 118 QRRQFKSSFEVSPKPCRKV 136
           Q    KS++  SPKP R V
Sbjct: 209 QLETLKSAYNSSPKPARHV 227


>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
 gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
          Length = 491

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 12/133 (9%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF- 63
           N  + C    F+ YG KC+ C   + P ++V RAQ HVYHL CF+C +C + L  G++F 
Sbjct: 141 NGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFY 200

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q    K
Sbjct: 201 LMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLETLK 249

Query: 124 SSFEVSPKPCRKV 136
           +++  SPKP R V
Sbjct: 250 TAYNNSPKPARHV 262


>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
 gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
          Length = 459

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KCA C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 103 ARNGQLFCKDDFFKRYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDE 162

Query: 63  F-ILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
           F ++  G+L C+ D+E    K +YL   S               DG    KRPRT +T+ 
Sbjct: 163 FYLIEDGKLICKPDYEAAKAKGLYLSDGS--------------LDGESSNKRPRTTITAK 208

Query: 118 QRRQFKSSFEVSPKPCRKV 136
           Q    KS++  SPKP R V
Sbjct: 209 QLETLKSAYNSSPKPARHV 227


>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
 gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
          Length = 490

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 12/133 (9%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF- 63
           N  + C    F+ YG KC+ C   + P ++V RAQ HVYHL CF+C +C + L  G++F 
Sbjct: 140 NGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFY 199

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q    K
Sbjct: 200 LMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLETLK 248

Query: 124 SSFEVSPKPCRKV 136
           +++  SPKP R V
Sbjct: 249 TAYNNSPKPARHV 261


>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
 gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
          Length = 456

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KCA C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 106 ARNGQLFCKDDFFKRYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDE 165

Query: 63  F-ILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
           F ++  G+L C+ D+E    K +YL   S               DG    KRPRT +T+ 
Sbjct: 166 FYLMEDGKLVCKPDYEAAKAKGLYLSDGS--------------LDGESSNKRPRTTITAK 211

Query: 118 QRRQFKSSFEVSPKPCRKV 136
           Q    KS++  SPKP R V
Sbjct: 212 QLETLKSAYNSSPKPARHV 230


>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
          Length = 690

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 18/130 (13%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    F+ +G KC  CG  + P E++ RAQ +VYHL CF C +C + +  G+QF +L 
Sbjct: 327 VFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLECFCCFLCHEKMGTGDQFYLLE 386

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             +L C++D+E+                    R  D   G KRPRT +T+ Q    KS++
Sbjct: 387 DNRLVCKKDYEQ-----------------AKSRDADIENGVKRPRTTITAKQLETLKSAY 429

Query: 127 EVSPKPCRKV 136
             SPKP R V
Sbjct: 430 NQSPKPARHV 439


>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
          Length = 390

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHLPCF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
          Length = 463

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  VYHL CF C +C + L  G++
Sbjct: 131 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDE 190

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 191 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 239

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 240 LKLAYNTSPKPARHV 254


>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
          Length = 391

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S   +V C    F+ +G KCA C   + P ++V +AQ  VYHL CF CV+C + L  G++
Sbjct: 73  SRAGNVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDE 132

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 133 FYLMEDGRLVCKEDYE--------TAKQND----------DSETGAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 175 LKSAYKNSPKPARHV 189


>gi|332018435|gb|EGI59029.1| LIM/homeobox protein Lhx3 [Acromyrmex echinatior]
          Length = 467

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  VYHL CF C +C + L  G++
Sbjct: 127 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDE 186

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 187 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 235

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 236 LKLAYNTSPKPARHV 250


>gi|322793254|gb|EFZ16911.1| hypothetical protein SINV_14186 [Solenopsis invicta]
          Length = 392

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  VYHL CF C +C + L  G++
Sbjct: 46  ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDE 105

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 106 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 154

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 155 LKLAYNTSPKPARHV 169


>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
          Length = 463

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  +YHL CF C +C + L  G++
Sbjct: 131 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDE 190

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 191 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 239

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 240 LKLAYNTSPKPARHV 254


>gi|345493999|ref|XP_001603795.2| PREDICTED: LIM/homeobox protein Lhx3-like [Nasonia vitripennis]
          Length = 450

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 13/135 (9%)

Query: 4   HNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF 63
           +N HV C    F+ YG KCA CG  L P ++V RAQ   YHL CF C +C + L  G++F
Sbjct: 97  NNGHVFCKDDFFKRYGTKCAGCGQGLAPSQVVRRAQDFTYHLTCFSCAMCSRQLDTGDEF 156

Query: 64  IL--RSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            L     +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 157 YLMVEDAKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 205

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 206 LKLAYNNSPKPARHV 220


>gi|312089563|ref|XP_003146293.1| hypothetical protein LOAG_10721 [Loa loa]
 gi|307758541|gb|EFO17775.1| hypothetical protein LOAG_10721 [Loa loa]
          Length = 212

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 24  RCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLM 83
           RCG  +   + V R  + +YHL CF C  C    +KG+ ++L  GQ+ CR D+E    L 
Sbjct: 2   RCGLPVQSTDYVYRVFASIYHLHCFKCFCCGHLFKKGDHYMLLDGQIICRPDYEH--LLC 59

Query: 84  QQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------S 137
           Q       +  D+N      R+ PKRPRTIL + QR+ FK +FE + KPCRKV       
Sbjct: 60  QAPMCQSHLYFDQN---DSNRKTPKRPRTILNTQQRKAFKLAFEKTSKPCRKVREQLAKE 116

Query: 138 TMNSKRAKNILTPNQRRQFK 157
           T  S R   +   NQR + K
Sbjct: 117 TNLSVRVVQVWFQNQRAKLK 136


>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
          Length = 467

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  VYHL CF C +C + L  G++
Sbjct: 127 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDE 186

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 187 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 235

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 236 LKLAYNTSPKPARHV 250


>gi|380012090|ref|XP_003690122.1| PREDICTED: LIM/homeobox protein Lhx3-like [Apis florea]
          Length = 465

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  +YHL CF C +C + L  G++
Sbjct: 133 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDE 192

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 193 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 241

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 242 LKLAYNTSPKPARHV 256


>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
          Length = 402

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + HV C    FR +G KCA CG  + P ++V RAQ  +YHL CF C++C + L  G++
Sbjct: 81  SRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDE 140

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E        ++   +M L+            KRPRT +T+ Q   
Sbjct: 141 FYLMEDAKLVCKSDYE--------AAKQREMELEGT---------QKRPRTTITAKQLET 183

Query: 122 FKSSFEVSPKPCRKV 136
            K +++ SPKP R V
Sbjct: 184 LKQAYQNSPKPARHV 198


>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
           [Branchiostoma floridae]
 gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
           [Branchiostoma floridae]
          Length = 402

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + HV C    FR +G KCA CG  + P ++V RAQ  +YHL CF C++C + L  G++
Sbjct: 81  SRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDE 140

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E        ++   +M L+            KRPRT +T+ Q   
Sbjct: 141 FYLMEDAKLVCKSDYE--------AAKQREMELEGT---------QKRPRTTITAKQLET 183

Query: 122 FKSSFEVSPKPCRKV 136
            K +++ SPKP R V
Sbjct: 184 LKQAYQNSPKPARHV 198


>gi|328782955|ref|XP_394135.3| PREDICTED: LIM/homeobox protein Lhx3 [Apis mellifera]
          Length = 442

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA CG  L P ++V RAQ  +YHL CF C +C + L  G++
Sbjct: 131 ARNGHVFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDE 190

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 191 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 239

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 240 LKLAYNTSPKPARHV 254


>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
 gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
          Length = 436

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 31/232 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ HVYHL CF+C +C + L  G++
Sbjct: 88  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDE 147

Query: 63  F-ILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
           F ++   +L C++D+E    K +YL                   DG +  KRPRT +T+ 
Sbjct: 148 FYLMEDRKLICKRDYEEAKAKGLYL-------------------DGDQPNKRPRTTITAK 188

Query: 118 QRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYL 177
           Q    K+++  SPKP R V    S+      T    R  +  F+      +++       
Sbjct: 189 QLETLKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRT 243

Query: 178 SLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDE 227
                 +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE
Sbjct: 244 RWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDE 295


>gi|341877265|gb|EGT33200.1| CBN-CEH-14 protein [Caenorhabditis brenneri]
          Length = 358

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 38/232 (16%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C    F+ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 96  CKTHFFKNFGTKCAACSEGIIPDHVVRKASGHIYHVECFTCFICKRVLETGEEFYLIADD 155

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+           D + L E     +G  G KRPRT +++      K +++
Sbjct: 156 ARLVCKDDYEQ---------ARDKLSLPETA-DSEGDGGNKRPRTTISAKSLETLKQAYQ 205

Query: 128 VSPKPCRKV----------------STMNSKRAKNI-LTPNQRRQFKSSFEI---SSMPC 167
            S KP R V                    ++RAK   L  +  R++KSS      S+ P 
Sbjct: 206 TSSKPARHVREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSTRAESDSNSPI 265

Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNP-----NHPYSPDDSYAMH 213
             + G   +YL L  ++ D +DS +   ++   P     N   S D +  MH
Sbjct: 266 ESINGQSPNYLYLDHAMDDVNDSNYIFQSREQTPDKFFRNETPSADPAAQMH 317


>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
 gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
          Length = 555

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 162 ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 221

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 222 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 270

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 271 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 325

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 326 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 375


>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
          Length = 499

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 12/133 (9%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF- 63
           N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++F 
Sbjct: 140 NGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFY 199

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q    K
Sbjct: 200 LMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLETLK 248

Query: 124 SSFEVSPKPCRKV 136
           +++  SPKP R V
Sbjct: 249 TAYNNSPKPARHV 261


>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
 gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
 gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
 gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
 gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
 gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
 gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
 gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
 gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
          Length = 520

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 162 ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 221

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 222 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 270

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 271 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 325

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 326 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 375


>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
 gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
          Length = 442

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
 gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
          Length = 523

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 167 ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 226

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 227 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 275

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 276 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 330

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 331 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 380


>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
 gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
          Length = 442

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
 gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
          Length = 448

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
 gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
          Length = 449

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
 gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
          Length = 444

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
          Length = 440

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
 gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
          Length = 440

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
 gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
          Length = 438

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
 gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
          Length = 545

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 12/133 (9%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF- 63
           N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++F 
Sbjct: 168 NGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFY 227

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q    K
Sbjct: 228 LMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLETLK 276

Query: 124 SSFEVSPKPCRKV 136
           +++  SPKP R V
Sbjct: 277 TAYNNSPKPARHV 289


>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
 gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
          Length = 405

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 47  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 107 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 155

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 156 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 210

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 211 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 260


>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
 gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
          Length = 451

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 82  ARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDE 141

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C++D+E+        + +  + LD +    DG +  KRPRT +T+ Q   
Sbjct: 142 FYLMEDRKLICKRDYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            K+++  SPKP R V    S+      T    R  +  F+      +++           
Sbjct: 191 LKTAYNNSPKPARHVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 245

Query: 182 SLQDSSDSIFASSTKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
             +    +    + K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 246 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 295


>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
           [Branchiostoma floridae]
 gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
           [Branchiostoma floridae]
          Length = 278

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S + HV C    FR +G KCA CG  + P ++V RAQ  +YHL CF C++C + L  G++
Sbjct: 81  SRDGHVYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDE 140

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E        ++   +M L+            KRPRT +T+ Q   
Sbjct: 141 FYLMEDAKLVCKSDYE--------AAKQREMELEGT---------QKRPRTTITAKQLET 183

Query: 122 FKSSFEVSPKPCRKV 136
            K +++ SPKP R V
Sbjct: 184 LKQAYQNSPKPARHV 198


>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
           occidentalis]
          Length = 408

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 28/177 (15%)

Query: 7   HVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-IL 65
           H+ C    F+ YG KCA C   + P ++V RAQ +VYHL CF C++C + L  G++F ++
Sbjct: 98  HLYCKDDFFKRYGTKCAGCEQGIPPTQVVRRAQENVYHLACFSCILCKRQLNTGDEFYLM 157

Query: 66  RSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSS 125
              +L C+ D+E                     + R+G    KRPRT +T+ Q    KS+
Sbjct: 158 EDNKLVCKADYEA-------------------AKAREGST--KRPRTTITAKQLETLKSA 196

Query: 126 FEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHY 176
           +  SPKP R V    S+      R   +   N+R + K   + +    R V   G Y
Sbjct: 197 YNQSPKPARHVREQLSRDTGLDMRVVQVWFQNRRAKEKRLKKDAGGKARWVASAGDY 253


>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
 gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
          Length = 389

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 19/139 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KCA C   + P ++V RAQ +VYHL CF+C +C + L  G++
Sbjct: 81  ARNGQLFCKDDFFKRYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDE 140

Query: 63  FILRSG-QLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
           F L    +L C+ D+E    K +YL   S               DG    KRPRT +T+ 
Sbjct: 141 FYLMEDCKLICKPDYEAAKAKGLYLSDGS--------------LDGESSNKRPRTTITAK 186

Query: 118 QRRQFKSSFEVSPKPCRKV 136
           Q    KS++  SPKP R V
Sbjct: 187 QLETLKSAYNSSPKPARHV 205


>gi|431915961|gb|ELK16215.1| LIM/homeobox protein Lhx4 [Pteropus alecto]
          Length = 329

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 9   SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDE 68

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 69  FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 110

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 111 LKNAYKNSPKPARHV 125


>gi|402897927|ref|XP_003911988.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-beta [Papio anubis]
          Length = 406

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 29/171 (16%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168

Query: 76  FEKEMYLMQQSSPSDDMML-----DENCRPRDGR--------------RGPKRPRTILTS 116
           +EKE  L+   SP +   +     D + +P  G+              R PKRPRTI +S
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTIPSS 228

Query: 117 AQRRQFKSSFEVSP----------KPCRKVSTMNSKRAKNILTPNQRRQFK 157
              R   ++    P          +      T  S R   +   NQR + K
Sbjct: 229 PXTRHLPAAAPGWPDLIPLSLGQVRETLAAETGLSVRVVQVWFQNQRAKMK 279


>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
          Length = 472

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S V C    F+ YG KCA C + + P E+V RAQ +VYHL CF C +C   L  G+Q
Sbjct: 118 SRGSFVYCKEDFFKRYGTKCAGCDEAIPPTEVVRRAQENVYHLECFRCFMCNDQLGTGDQ 177

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F +L   +L C++D+E        ++ S D+ +D          G KRPRT +T+ Q   
Sbjct: 178 FYLLDDNRLVCKKDYE--------TAKSRDIDMDN---------GIKRPRTTITAKQLET 220

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 221 LKLAYNQSPKPARHV 235


>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
          Length = 244

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S   +V C    F+ +G KCA C   + P ++V +AQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRAGNVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 131 FYLMEDGRLVCKEDYE--------TAKQND----------DSETGAKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 173 LKSAYKNSPKPARHV 187


>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
          Length = 278

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 27/193 (13%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSG 68
           C    FR +G KCA C   + P ++V RAQ HVYHL CF CV+C + L  G++F ++   
Sbjct: 88  CKEDFFRRFGTKCACCDQGIAPSQIVRRAQHHVYHLECFQCVLCGRQLDTGDEFYLMEDR 147

Query: 69  QLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEV 128
           +L C+ D+E       ++  S  + L       +G   PKRPRT +T+ Q    KS++  
Sbjct: 148 KLVCKADYES-----AKTKGSHFLEL-------EGENPPKRPRTTITAKQLETLKSAYNA 195

Query: 129 SPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGMS 182
           SPKP R V    S+      R   +   N+R + K          +K      + ++  S
Sbjct: 196 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--------LKKDAGRARWETINRS 247

Query: 183 LQDSSDSIFASST 195
           +    D +F  ST
Sbjct: 248 VVIKHDGLFPVST 260


>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
 gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
          Length = 366

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 15/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  V C    F+ +G KCA C   + P ++V RAQ +VYHL CF C +C + L  G++
Sbjct: 64  ARNGQVYCKDDFFKRFGTKCAGCEQGIPPTQVVRRAQENVYHLQCFACAMCARQLNTGDE 123

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E        +   D + L       DG +  KRPRT +T+ Q   
Sbjct: 124 FYLMEDKKLVCKPDYEA-------AKTKDGVCL-------DGDQPNKRPRTTITAKQLET 169

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 170 LKSAYNNSPKPARHV 184


>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
           boliviensis]
          Length = 390

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
          Length = 390

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|148707455|gb|EDL39402.1| LIM homeobox protein 4, isoform CRA_a [Mus musculus]
          Length = 329

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 9   SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 68

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 69  FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 110

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 111 LKNAYKNSPKPARHV 125


>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
          Length = 568

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           + N  + C    F+ YG KCA C   + P ++V RAQ +VYHL CF+C +C + L  G E
Sbjct: 215 ARNGQLFCKDDFFKRYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDE 274

Query: 62  QFILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSA 117
            +++   +L C+ D+E    K +YL      SD  +        DG    KRPRT +T+ 
Sbjct: 275 YYLMEDCKLICKPDYEAAKAKGLYL------SDGSL--------DGESSNKRPRTTITAK 320

Query: 118 QRRQFKSSFEVSPKPCRKV 136
           Q    KS++  SPKP R V
Sbjct: 321 QLETLKSAYNSSPKPARHV 339


>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
           homeobox protein 3; AltName: Full=LIM/homeobox protein
           LIM; Short=HrLIM
          Length = 692

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 18/130 (13%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    F+ +G KC  CG  + P E++ RAQ +VYHL  F C +C + +  G+QF +L 
Sbjct: 327 VFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLE 386

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             +L C++D+E+                    R  D   G KRPRT +T+ Q    KS++
Sbjct: 387 DNRLVCKKDYEQ-----------------AKSRDADIENGVKRPRTTITAKQLETLKSAY 429

Query: 127 EVSPKPCRKV 136
             SPKP R V
Sbjct: 430 NQSPKPARHV 439


>gi|157820803|ref|NP_001101818.1| LIM/homeobox protein Lhx4 [Rattus norvegicus]
 gi|149058350|gb|EDM09507.1| LIM homeobox protein 4 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 329

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 9   SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 68

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 69  FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 110

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 111 LKNAYKNSPKPARHV 125


>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
          Length = 389

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V +AQ  VYHL CF C++C + L  G++
Sbjct: 71  SRAGSVYCKEDFFKRFGTKCASCQQGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C+ D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 131 FYLMEDGRLVCKVDYE--------AAKQND----------DSEAGTKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 173 LKSAYKNSPKPARHV 187


>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 363

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V +AQ  VYHL CF C++C + L  G++
Sbjct: 45  SRAGSVYCKEDFFKRFGTKCASCQKGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDE 104

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C+ D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 105 FYLMEDGRLVCKVDYE--------AAKQND----------DSEAGTKRPRTTITAKQLET 146

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 147 LKSAYKNSPKPARHV 161


>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
          Length = 387

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V +AQ  VYHL CF C++C + L  G++
Sbjct: 71  SRAGSVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C+ D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 131 FYLMEDGRLVCKVDYE--------AAKQND----------DSEAGTKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 173 LKSAYKNSPKPARHV 187


>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
          Length = 390

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF CVIC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
          Length = 389

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V +AQ  VYHL CF C++C + L  G++
Sbjct: 71  SRAGSVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C+ D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 131 FYLMEDGRLVCKVDYE--------TAKQND----------DSEAGTKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            KS+++ SPKP R V
Sbjct: 173 LKSAYKNSPKPARHV 187


>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
 gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
          Length = 466

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 146 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 205

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 206 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 247

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 248 LKNAYKNSPKPARHV 262


>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
 gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
           4
 gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
 gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
 gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
 gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
 gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
 gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
 gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
 gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
           4
 gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
           familiaris]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
          Length = 421

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N HV C    F+ +G KCA C   L P ++V RAQ  VYHL CF C +C + L  G++
Sbjct: 128 ARNGHVFCREDFFKRFGTKCAGCSQGLSPSQVVRRAQELVYHLTCFSCALCSRQLDTGDE 187

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q   
Sbjct: 188 FYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQLET 236

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 237 LKLAYNTSPKPARHV 251


>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
          Length = 389

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 69  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 128

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 129 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 170

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 171 LKNAYKNSPKPARHV 185


>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
 gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
 gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
 gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
          Length = 367

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 47  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 107 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 148

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 149 LKNAYKNSPKPARHV 163


>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
          Length = 390

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
          Length = 364

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 44  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 103

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 104 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 145

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 146 LKNAYKNSPKPARHV 160


>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
          Length = 390

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
          Length = 367

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 47  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 107 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 148

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 149 LKNAYKNSPKPARHV 163


>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 376

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 56  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 115

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 116 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 157

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 158 LKNAYKNSPKPARHV 172


>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
          Length = 391

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 71  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 131 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 173 LKNAYKNSPKPARHV 187


>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
          Length = 374

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 19/130 (14%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F ++ 
Sbjct: 61  VYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLME 120

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
            G+L C++D+E        ++  +D          D   G KRPRT +T+ Q    K+++
Sbjct: 121 DGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLETLKNAY 162

Query: 127 EVSPKPCRKV 136
           + SPKP R V
Sbjct: 163 KNSPKPARHV 172


>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
          Length = 365

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF CVIC + L  G++
Sbjct: 45  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDE 104

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 105 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 146

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 147 LKNAYKNSPKPARHV 161


>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
          Length = 390

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF CVIC + L  G++
Sbjct: 70  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|268580151|ref|XP_002645058.1| C. briggsae CBR-CEH-14 protein [Caenorhabditis briggsae]
          Length = 351

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 37/215 (17%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--RS 67
           C    F+ +G KCA C D ++P  +V +A  H+YH+ CF C IC + L+ GE+F L    
Sbjct: 95  CRAHFFKKFGTKCASCEDGIVPDHVVRKASGHIYHVECFNCFICKRLLETGEEFYLIPDD 154

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+                D+     +G  G KRPRT +++      K +++
Sbjct: 155 ARLVCKDDYEQAR--------------DKQSAESEGDGGNKRPRTTISAKSLETLKQAYQ 200

Query: 128 VSPKPCR-----------------KVSTMNSKRAKNILTPNQRRQFKSSFEI---SSMPC 167
            S KP R                 +V   N +  +  L  +  R++KSS      S+ P 
Sbjct: 201 TSSKPARHIREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSTRAESDSNSPI 260

Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPN 201
             + G   +YL L  ++ D ++S F   ++  +P+
Sbjct: 261 ESINGQSPNYLYLEHTIDDGNESNFMFQSREQSPD 295


>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
          Length = 611

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 18/130 (13%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    F+ +G KC  CG  + P E++ RAQ +VYHL  F C +C + +  G+QF +L 
Sbjct: 246 VFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLE 305

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             +L C++D+E+                    R  D   G KRPRT +T+ Q    KS++
Sbjct: 306 DNRLVCKKDYEQ-----------------AKSRDADIENGVKRPRTTITAKQLETLKSAY 348

Query: 127 EVSPKPCRKV 136
             SPKP R V
Sbjct: 349 NQSPKPARHV 358


>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
           [Meleagris gallopavo]
          Length = 384

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 19/130 (14%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F ++ 
Sbjct: 72  VYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLME 131

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
            G+L C++D+E        ++  +D          D   G KRPRT +T+ Q    K+++
Sbjct: 132 DGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLETLKNAY 173

Query: 127 EVSPKPCRKV 136
           + SPKP R V
Sbjct: 174 KNSPKPARHV 183


>gi|444730606|gb|ELW70984.1| LIM homeobox transcription factor 1-alpha [Tupaia chinensis]
          Length = 265

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 52/74 (70%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147

Query: 76  FEKEMYLMQQSSPS 89
           +EKE  L+   SP+
Sbjct: 148 YEKERELLSLVSPA 161


>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
 gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
          Length = 596

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S+V C    F+ +G KC+ C   + P ++V RAQ +VYHL CF C +C + L  G+Q
Sbjct: 235 SRGSYVYCKEDFFKRFGTKCSGCELAIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQ 294

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F +L   +L C++D+E         + S D+ +D          G KRPRT +T+ Q   
Sbjct: 295 FYLLDDSRLVCKKDYEH--------AKSRDLDMDN---------GIKRPRTTITAKQLET 337

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 338 LKIAYNQSPKPARHV 352


>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
          Length = 449

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 129 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 188

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 189 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 230

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 231 LKNAYKNSPKPARHV 245


>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
          Length = 390

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 19/128 (14%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSG 68
           C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F ++  G
Sbjct: 77  CKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDG 136

Query: 69  QLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEV 128
           +L C++D+E        ++  +D          D   G KRPRT +T+ Q    K++++ 
Sbjct: 137 RLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLETLKNAYKN 178

Query: 129 SPKPCRKV 136
           SPKP R V
Sbjct: 179 SPKPARHV 186


>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
           guttata]
          Length = 412

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 87  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDE 146

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 147 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 188

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 189 LKNAYKNSPKPARHV 203



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 19/125 (15%)

Query: 13  RGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLF 71
           R F  +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F ++  G+L 
Sbjct: 276 RAFLRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLV 335

Query: 72  CRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPK 131
           C++D+E        ++  +D          D   G KRPRT +T+ Q    K++++ SPK
Sbjct: 336 CKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLETLKNAYKNSPK 377

Query: 132 PCRKV 136
           P R V
Sbjct: 378 PARHV 382


>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
          Length = 396

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 70  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 130 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 170

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 171 LKSAYNTSPKPARHV 185


>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
          Length = 523

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 19/217 (8%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQ 74
           R YG KC+ C   + P ++V RAQ +VYHL CF+C +C + L  G++F ++   +L C++
Sbjct: 178 RRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKR 237

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           D+E+        + +  + LD +    DG +  KRPRT +T+ Q    K+++  SPKP R
Sbjct: 238 DYEE--------AKAKGLYLDGSL---DGDQPNKRPRTTITAKQLETLKTAYNNSPKPAR 286

Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGMSLQDSSDSIFASS 194
            V    S+      T    R  +  F+      +++             +    +    +
Sbjct: 287 HVREQLSQD-----TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRT 341

Query: 195 TKPLNPNHPYSPDDSYAMH--SNDSFCSSDISLDEST 229
            K L+ +      DS++ H  SNDS+ + ++ LDE  
Sbjct: 342 DKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGA 378


>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
          Length = 236

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 45  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDE 104

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 105 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 146

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 147 LKNAYKNSPKPARHV 161


>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
           tropicalis]
          Length = 385

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 19/132 (14%)

Query: 6   SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-I 64
            +V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F +
Sbjct: 82  GNVYCKEDFFKCFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFSCIICSRQLATGDEFYL 141

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           +  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q    K+
Sbjct: 142 MEDGRLVCKEDYE--------TAKQND----------DSEGGAKRPRTTITAKQLETLKN 183

Query: 125 SFEVSPKPCRKV 136
           +++ SPKP R V
Sbjct: 184 AYKNSPKPARHV 195


>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
          Length = 402

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
          Length = 397

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
          Length = 486

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 15/138 (10%)

Query: 3   SHNSHVSCHPRGF---RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK 59
           + N HV C    F   R +G KCA CG  L P ++V RAQ  +YHL CF C +C + L  
Sbjct: 151 ARNGHVFCKDDFFKYGRRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDT 210

Query: 60  GEQF-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQ 118
           G++F ++   +L C+ D+E+     +    +D   +       DG +  KRPRT +T+ Q
Sbjct: 211 GDEFYLMEDRKLVCKPDYEQ----AKAKELADGGSI-------DGDQPNKRPRTTITAKQ 259

Query: 119 RRQFKSSFEVSPKPCRKV 136
               K ++  SPKP R V
Sbjct: 260 LETLKLAYNTSPKPARHV 277


>gi|358333778|dbj|GAA52242.1| LIM homeobox protein 3/4, partial [Clonorchis sinensis]
          Length = 405

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 68/130 (52%), Gaps = 18/130 (13%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
           V C    FR +G KCA C   + P E+V  AQ +VYH+ CF CVIC + L  G++F +LR
Sbjct: 33  VYCKNDFFRRFGTKCAGCERGIPPTEVVRTAQDNVYHMDCFACVICDRLLNTGDEFYLLR 92

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             +L C+ DFE        ++ + +  LD            KRPRT +T+ Q    K ++
Sbjct: 93  DRKLMCKYDFE--------TAKARESELDS---------ANKRPRTTITAKQLEALKRAY 135

Query: 127 EVSPKPCRKV 136
             SPKP R V
Sbjct: 136 NESPKPVRHV 145


>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
           anatinus]
          Length = 884

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 620 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 679

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 680 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 721

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 722 LKNAYKNSPKPARHV 736


>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
 gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
 gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
          Length = 402

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
 gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
          Length = 403

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
          Length = 190

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 41  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 100

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 101 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 142

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 143 LKNAYKNSPKPARHV 157


>gi|170586684|ref|XP_001898109.1| Homeobox protein ceh-14 [Brugia malayi]
 gi|158594504|gb|EDP33088.1| Homeobox protein ceh-14, putative [Brugia malayi]
          Length = 319

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 28/190 (14%)

Query: 9   SCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--R 66
           S HP   R +G KC+ C + + P  +V RA  HVYH+ CF C+IC + L+ GE+F L   
Sbjct: 64  SFHPHCLRRFGTKCSMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPT 123

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
            G+L C+ D+E     M +S  +D   +D N          KRPRT +++      K ++
Sbjct: 124 DGRLVCKSDYE-----MAKSKETD---IDSN---------TKRPRTTISAKSLETLKQAY 166

Query: 127 EVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLG 180
           + S KP R V       T    R   +   N+R + K    +     R+ G +G   SL 
Sbjct: 167 QASSKPARHVREQLAADTGLDMRVVQVWFQNRRAKEK---RLKKDAGRQWGTYGIPKSLD 223

Query: 181 MSLQDSSDSI 190
                 +DSI
Sbjct: 224 SGSASPNDSI 233


>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
           purpuratus]
          Length = 545

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  V C    F+ +G KC+ C   + P E+V RA  +VYHL CF C+IC + L  G++
Sbjct: 187 SRDGGVFCKEDFFKRFGTKCSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDE 246

Query: 63  FILRS-GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F L +  +L C+QD+E        ++ + ++ +D +          KRPRT +T+ Q   
Sbjct: 247 FFLMTDNKLVCKQDYE--------AAKARELEMDNSN---------KRPRTTITAKQLET 289

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 290 LKTAYSNSPKPARHV 304


>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
          Length = 402

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|17551226|ref|NP_509273.1| Protein CEH-14 [Caenorhabditis elegans]
 gi|21264444|sp|P20271.3|HM14_CAEEL RecName: Full=Homeobox protein ceh-14
 gi|8572736|gb|AAF77181.1|AF244368_1 LIM homeobox protein CEH-14 [Caenorhabditis elegans]
 gi|351063218|emb|CCD71294.1| Protein CEH-14 [Caenorhabditis elegans]
          Length = 351

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 37/218 (16%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C    ++ +G KC+ C + ++P  +V +A +HVYH+ CF C IC + L+ GE+F L +  
Sbjct: 95  CRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADD 154

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+                D++C   +G    KRPRT +++      K +++
Sbjct: 155 ARLVCKDDYEQAR--------------DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQ 200

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFEI---SSMPC 167
            S KP R V                    ++RAK   L  +  R++KSS      S+ P 
Sbjct: 201 TSSKPARHVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSNRAESDSNSPI 260

Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
             + G   +YL L   + D ++S +   ++   P+  Y
Sbjct: 261 ESINGQSPNYLYLDHPMDDGNESNYLFHSREQTPDKYY 298


>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
          Length = 401

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
          Length = 386

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 60  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 119

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 120 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 160

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 161 LKSAYNTSPKPARHV 175


>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
 gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
 gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
          Length = 400

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
          Length = 402

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
 gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
          Length = 403

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
          Length = 402

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
 gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
 gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
 gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
          Length = 402

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
          Length = 397

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
           mulatta]
          Length = 390

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 19/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C     R +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 70  SRAGSVYCKEDPDRRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++  G+L C++D+E        ++  +D          D   G KRPRT +T+ Q   
Sbjct: 130 FYLMEDGRLVCKEDYE--------TAKQND----------DSEAGAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 172 LKNAYKNSPKPARHV 186


>gi|7511466|pir||T34266 LIM homeobox protein ceh-14 - Caenorhabditis elegans
          Length = 348

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 37/218 (16%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C    ++ +G KC+ C + ++P  +V +A +HVYH+ CF C IC + L+ GE+F L +  
Sbjct: 92  CRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADD 151

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+                D++C   +G    KRPRT +++      K +++
Sbjct: 152 ARLVCKDDYEQAR--------------DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQ 197

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFEI---SSMPC 167
            S KP R V                    ++RAK   L  +  R++KSS      S+ P 
Sbjct: 198 TSSKPARHVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSNRAESDSNSPI 257

Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
             + G   +YL L   + D ++S +   ++   P+  Y
Sbjct: 258 ESINGQSPNYLYLDHPMDDGNESNYLFHSREQTPDKYY 295


>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
 gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
 gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
 gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
          Length = 403

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
          Length = 373

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 47  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 107 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 147

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 148 LKSAYNTSPKPARHV 162


>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
 gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
 gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
 gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
 gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
 gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
 gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
          Length = 402

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
          Length = 403

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCREDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNNSPKPARHV 191


>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
 gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
          Length = 370

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 44  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 103

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 104 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 144

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 145 LKSAYNTSPKPARHV 159


>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
           boliviensis]
          Length = 397

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
          Length = 402

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
          Length = 397

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 10/144 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 50  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 109

Query: 63  F-ILRSGQLFCRQDFEKEM------YLMQQSSP---SDDMMLDENCRPRDGRRGPKRPRT 112
           F ++  G+L C++D+E         +  +Q  P   S    +       D   G KRPRT
Sbjct: 110 FYLMEDGRLVCKEDYETAKQNGCLGWGRRQRKPSCFSWANSIKVVFTVDDSEAGAKRPRT 169

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKV 136
            +T+ Q    K++++ SPKP R V
Sbjct: 170 TITAKQLETLKNAYKNSPKPARHV 193


>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
          Length = 373

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 47  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 107 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 147

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 148 LKSAYNTSPKPARHV 162


>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
           [Cavia porcellus]
          Length = 403

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                     + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADYEA-------------------AKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
          Length = 401

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCREDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNNSPKPARHV 189


>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
          Length = 402

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
 gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3
 gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
 gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
 gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
 gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
 gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
 gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
          Length = 397

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
 gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
 gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
 gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
          Length = 395

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++
Sbjct: 68  SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDE 127

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
          Length = 401

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
          Length = 448

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 122 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 181

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 182 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 222

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 223 LKSAYNASPKPARHV 237


>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
          Length = 397

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
          Length = 399

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++
Sbjct: 72  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 131

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 132 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 172

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 173 LKNAYNNSPKPARHV 187


>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
          Length = 402

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
           harrisii]
          Length = 403

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 177 LKNAYNNSPKPARHV 191


>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
          Length = 665

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++
Sbjct: 68  SRGDGVYCKEDFFKRFGTKCAACHQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3; AltName: Full=Homeobox protein LIM-3; AltName:
           Full=Homeobox protein P-LIM
 gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
 gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
          Length = 400

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
          Length = 397

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 171

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 172 LKSAYNTSPKPARHV 186


>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
          Length = 485

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  V C    F+ +G KC+ C   + P E+V RA  +VYHL CF C+IC + L  G++
Sbjct: 127 SRDGGVFCKEDFFKRFGTKCSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDE 186

Query: 63  FILRS-GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F L +  +L C+QD+E        ++ + ++ +D +          KRPRT +T+ Q   
Sbjct: 187 FFLMTDNKLVCKQDYE--------AAKARELEMDNSN---------KRPRTTITAKQLET 229

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 230 LKTAYSNSPKPARHV 244


>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
           caballus]
          Length = 401

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
          Length = 400

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
           domestica]
          Length = 403

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 177 LKNAYNNSPKPARHV 191


>gi|9971753|gb|AAG10399.1| lim-homeobox transcription factor LHX3 [Homo sapiens]
          Length = 397

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G+ 
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDD 135

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 136 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 176

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 177 LKSAYNTSPKPARHV 191


>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
 gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3; AltName: Full=Homeobox protein LIM-3
 gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
           bp 259 .. 414; amino acid feature: homeodomain, bp 457
           .. 636 [Gallus gallus]
          Length = 395

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++
Sbjct: 68  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|258504711|gb|ACV72975.1| CEH-14 [Caenorhabditis remanei]
          Length = 300

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 38/219 (17%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C P  ++ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 80  CRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADD 139

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+                D++    +G    KRPRT +++      K +++
Sbjct: 140 ARLVCKDDYEQ--------------ARDKHTAESEGDGSNKRPRTTISAKSLDTLKQAYQ 185

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFE----ISSMP 166
            S KP R V                    ++RAK   L  +  R++K+S       S+ P
Sbjct: 186 ASSKPARHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSANRAESDSNSP 245

Query: 167 CRKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
              + G   +YL L  ++ D ++S +   ++  +P+  +
Sbjct: 246 IESINGQSPNYLYLDQAMDDGNESNYIFQSREQSPDKYF 284


>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
           kowalevskii]
 gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
           kowalevskii]
          Length = 390

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 13/135 (9%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC+ C   + P ++V RAQ +VYHL CF CV+C + L  G++
Sbjct: 75  SRGGQVYCKEDFFKRFGTKCSACDQGIPPTQVVRRAQDNVYHLQCFACVMCNRQLATGDE 134

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E     ++  + SD  M   N          KRPRT +++ Q   
Sbjct: 135 FYLMNDNKLVCKGDYEAAK--VRGGTDSDLEMDASN----------KRPRTTISAKQLET 182

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 183 LKTAYANSPKPARHV 197


>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
          Length = 400

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRRESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 175 LKSAYNTSPKPARHV 189


>gi|258504705|gb|ACV72972.1| CEH-14 [Caenorhabditis remanei]
 gi|258504707|gb|ACV72973.1| CEH-14 [Caenorhabditis remanei]
 gi|258504709|gb|ACV72974.1| CEH-14 [Caenorhabditis remanei]
 gi|258504713|gb|ACV72976.1| CEH-14 [Caenorhabditis remanei]
 gi|258504717|gb|ACV72978.1| CEH-14 [Caenorhabditis remanei]
 gi|258504719|gb|ACV72979.1| CEH-14 [Caenorhabditis remanei]
 gi|258504721|gb|ACV72980.1| CEH-14 [Caenorhabditis remanei]
 gi|258504723|gb|ACV72981.1| CEH-14 [Caenorhabditis remanei]
 gi|258504727|gb|ACV72983.1| CEH-14 [Caenorhabditis remanei]
 gi|258504729|gb|ACV72984.1| CEH-14 [Caenorhabditis remanei]
 gi|258504731|gb|ACV72985.1| CEH-14 [Caenorhabditis remanei]
 gi|258504733|gb|ACV72986.1| CEH-14 [Caenorhabditis remanei]
          Length = 304

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 34/219 (15%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C P  ++ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 80  CRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADD 139

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+           D + L +     +G    KRPRT +++      K +++
Sbjct: 140 ARLVCKDDYEQ---------ARDKLGLPDTAES-EGDGSNKRPRTTISAKSLDTLKQAYQ 189

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFE----ISSMP 166
            S KP R V                    ++RAK   L  +  R++K+S       S+ P
Sbjct: 190 ASSKPARHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSANRAESDSNSP 249

Query: 167 CRKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
              + G   +YL L  ++ D ++S +   ++  +P+  +
Sbjct: 250 IESINGQSPNYLYLDQAMDDGNESNYIFQSREQSPDKYF 288


>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
           rubripes]
          Length = 390

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 59  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 118

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 119 YYLMEDSRLVCKTDY-------------------ETAKQREADSTAKRPRTTITAKQLET 159

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 160 LKNAYNNSPKPARHV 174


>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
           rubripes]
          Length = 399

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 68  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 YYLMEDSRLVCKTDY-------------------ETAKQREADSTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
           harrisii]
          Length = 401

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 175 LKNAYNNSPKPARHV 189


>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3; AltName: Full=Homeobox protein LIM-3; AltName:
           Full=Homeobox protein P-LIM
 gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
          Length = 383

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 56  SRGESLYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 115

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 116 FYLMEDSRLVCKADY-------------------ETAKQREAEATAKRPRTTITAKQLET 156

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 157 LKSAYNTSPKPARHV 171


>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
           rubripes]
          Length = 406

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 75  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 134

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 135 YYLMEDSRLVCKTDY-------------------ETAKQREADSTAKRPRTTITAKQLET 175

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 176 LKNAYNNSPKPARHV 190


>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
          Length = 342

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 22/135 (16%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  V C     R +G +CA C   + P ++V RAQ +VYHL CF C IC + L  G++
Sbjct: 159 SRDGEVFCKADFSRRFGTRCAGCNQPIPPTQVVRRAQENVYHLQCFACFICSRQLSTGDE 218

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                     R +DG +  KRPRT +TS Q   
Sbjct: 219 FYLMDDKKLVCKADYEAA-------------------RAKDGNQ--KRPRTTITSKQLDT 257

Query: 122 FKSSFEVSPKPCRKV 136
            K+++ VS KP R V
Sbjct: 258 LKAAYTVSSKPSRAV 272


>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
           occidentalis]
          Length = 363

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    ++ +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 46  SRDGKLFCRSDFYKRFGTKCAGCAQGISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEE 105

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            ++L   +  C++D+  +    Q S P   M + ++      RRG   PRT + + Q   
Sbjct: 106 LYVLDENRFICKEDYLNQR--QQGSGPESQMNVADDGNGSQKRRG---PRTTIKAKQLET 160

Query: 122 FKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
            K++F  +PKP R +       T  + R   +   N+R + +   ++S++  R+
Sbjct: 161 LKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSTLGPRR 214


>gi|258504715|gb|ACV72977.1| CEH-14 [Caenorhabditis remanei]
 gi|258504725|gb|ACV72982.1| CEH-14 [Caenorhabditis remanei]
          Length = 304

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 34/219 (15%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C P  ++ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 80  CRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADD 139

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+           D + L +     +G    KRPRT +++      K +++
Sbjct: 140 ARLVCKDDYEQ---------ARDKLGLPDTAES-EGDGSNKRPRTTISAKSLDTLKQAYQ 189

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFE----ISSMP 166
            S KP R V                    ++RAK   L  +  R++K+S       S+ P
Sbjct: 190 ASSKPARHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSANRAESDSNSP 249

Query: 167 CRKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
              + G   +YL L  ++ D ++S +   ++  +P+  +
Sbjct: 250 IESINGQSPNYLYLDQAMDDGNESNYIFQSREQSPDKYF 288


>gi|308512223|ref|XP_003118294.1| CRE-CEH-14 protein [Caenorhabditis remanei]
 gi|308238940|gb|EFO82892.1| CRE-CEH-14 protein [Caenorhabditis remanei]
          Length = 409

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C P  ++ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 152 CRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADD 211

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+                D++    +G    KRPRT +++      K +++
Sbjct: 212 ARLVCKDDYEQAR--------------DKHTAESEGDGSNKRPRTTISAKSLDTLKQAYQ 257

Query: 128 VSPKPCRKV 136
            S KP R V
Sbjct: 258 ASSKPARHV 266


>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
           domestica]
          Length = 401

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 134 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 175 LKNAYNNSPKPARHV 189


>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
          Length = 448

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 15/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ +G KCA C   + P ++V RAQ +VYHL CF CV+C + L  G++
Sbjct: 141 ARNGQLFCKEDFFKRFGTKCAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDE 200

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E       +S  ++ +         DG +  KRPRT +T+ Q   
Sbjct: 201 FYLMEDRKLVCKPDYEAA-----KSKAAECL---------DGDQPNKRPRTTITAKQLET 246

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 247 LKNAYNNSPKPARHV 261


>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ +VYHL CF C +C Q L  G++
Sbjct: 184 SKGDKVYCKEDFFRRFGTKCAGCEQGIPPTQVVRRAQDNVYHLECFACSMCSQQLNTGDE 243

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E        S+ + +  LD            KRPRT +T+ Q   
Sbjct: 244 FYLMDDKKLVCKGDYE--------SNKAKEFDLDN---------ANKRPRTTITAKQLEA 286

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 287 LKRAYNESPKPARHV 301


>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 444

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 45  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 104

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 105 YYLMEDSRLVCKTDY-------------------ETAKQREADSTAKRPRTTITAKQLET 145

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 146 LKNAYNNSPKPARHV 160


>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
          Length = 399

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 35/202 (17%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   +LP ++V RA+S V+HL CF CV+C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRKFGTKCAGCAQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRR------------ 105
            +IL   +  C++D+E    K+  L+  ++ SD  +  ++  P+D  +            
Sbjct: 104 LYILDEFKFVCKEDYENNSGKDTILLSVTTCSDPSLSPDSQDPQDDGKDSENGHLSDKDT 163

Query: 106 -----------GPKR-PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNI 147
                      G +R PRT + + Q    K++F  +PKP R +    S+      R   +
Sbjct: 164 CSNENDEQSAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQV 223

Query: 148 LTPNQRRQFKSSFEISSMPCRK 169
              N+R + +   ++S++  R+
Sbjct: 224 WFQNRRSKERRMKQLSALSARR 245


>gi|258504735|gb|ACV72987.1| CEH-14 [Caenorhabditis remanei]
          Length = 304

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 34/219 (15%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
           C P  ++ +G KCA C + ++P  +V +A  H+YH+ CF C IC + L+ GE+F L +  
Sbjct: 80  CRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADD 139

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            +L C+ D+E+           D + L +     +G    KRPRT +++      K +++
Sbjct: 140 ARLVCKDDYEQ---------ARDKLGLPDTAES-EGDGSNKRPRTTISAKSLDTLKQAYQ 189

Query: 128 VSPKPCRKVS----------------TMNSKRAKNI-LTPNQRRQFKSSFE----ISSMP 166
            S KP R V                    ++RAK   L  +  R++K+S       S+ P
Sbjct: 190 ASSKPARHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSSNRAESDSNSP 249

Query: 167 CRKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY 204
              + G   +YL L  ++ D ++S +   ++  +P+  +
Sbjct: 250 IESINGQSPNYLYLDQAMDDGNESNYIFQSREQSPDKYF 288


>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
          Length = 379

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 52  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 111

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 112 YYLMEDSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLET 152

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 153 LKNAYNNSPKPARHV 167


>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
          Length = 400

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 20/130 (15%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-EQFILR 66
           V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E +++ 
Sbjct: 73  VYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLME 132

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             +L C+ D+                   E  + R+     KRPRT +T+ Q    K+++
Sbjct: 133 DSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLETLKNAY 173

Query: 127 EVSPKPCRKV 136
             SPKP R V
Sbjct: 174 NNSPKPARHV 183


>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
 gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
           3; AltName: Full=Homeobox protein LIM-3
 gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
          Length = 398

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 68  SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 YYLMEDSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
          Length = 415

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 15/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ +G KCA C   + P ++V RAQ +VYHL CF CV+C + L  G++
Sbjct: 108 ARNGQLFCKEDFFKRFGTKCAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDE 167

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E       +S  ++ +         DG +  KRPRT +T+ Q   
Sbjct: 168 FYLMEDRKLVCKPDYEAA-----KSKAAECL---------DGDQPNKRPRTTITAKQLET 213

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 214 LKNAYNNSPKPARHV 228


>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
          Length = 398

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 68  SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 YYLMEDSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
 gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
          Length = 395

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E
Sbjct: 68  SRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 YYLMEDSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|70887599|ref|NP_001020669.1| LIM homeobox transcription factor 1, alpha [Danio rerio]
          Length = 366

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 85/174 (48%), Gaps = 21/174 (12%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQ-SHVYHLPCFVCVICCQPLQKGEQF 63
           N  + C     +L+ V+C  C + + P E+VMRAQ S V+HL CF C +C   LQKG+  
Sbjct: 68  NKTLYCKRDYQKLFVVRCQGCSEIISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHC 127

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMML--------------DENCRPRDGRRGPKR 109
           +LR   LFC   F  ++     S       +              + N       + PKR
Sbjct: 128 VLRGDGLFCATHFHNQLASPTSSDSGKSEDIEEDNDDEDNLKTAGESNITGDVEHKRPKR 187

Query: 110 PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
           PRTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR + K
Sbjct: 188 PRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 241


>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
          Length = 375

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + N  + C    F+ YG KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 85  ARNGMLFCKDDFFKRYGTKCAGCDLGIPPTQIVRRAQDLVYHLQCFACVMCGRTLNTGDE 144

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                 +  C   DG +  KRPRT +T+ Q   
Sbjct: 145 FYLMEDRKLVCKPDYEAA------------KTKEGGC--LDGDQPNKRPRTTITAKQLET 190

Query: 122 FKSSFEVSPKPCRKV 136
            K ++  SPKP R V
Sbjct: 191 LKMAYNNSPKPARHV 205


>gi|291408327|ref|XP_002720473.1| PREDICTED: LIM homeobox transcription factor 1, beta [Oryctolagus
           cuniculus]
          Length = 115

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 51/75 (68%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 36  RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 95

Query: 76  FEKEMYLMQQSSPSD 90
           +EKE  L+   SP +
Sbjct: 96  YEKEKDLLSSVSPDE 110


>gi|327291516|ref|XP_003230467.1| PREDICTED: LIM/homeobox protein Lhx3-like, partial [Anolis
           carolinensis]
          Length = 314

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 20/120 (16%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
           +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++F ++   +L C+ D+
Sbjct: 2   FGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCIVCKRQLATGDEFYLMEDSRLVCKADY 61

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
                              E  + R+     KRPRT +T+ Q    KS++  SPKP R V
Sbjct: 62  -------------------ETAKQREAESTAKRPRTTITAKQLETLKSAYNNSPKPARHV 102


>gi|27652286|gb|AAO17712.1| homeodomain protein LMX1b [Rattus norvegicus]
          Length = 105

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 19/99 (19%)

Query: 57  LQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMML-----DENCRPRDGR------- 104
           L+KG++F+L+ GQL C+ D+EKE  L+   SP +   +     D + +P  G+       
Sbjct: 4   LRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGS 63

Query: 105 -------RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
                  R PKRPRTILT+ QRR FK+SFEVS KPCRKV
Sbjct: 64  GDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKV 102


>gi|301611522|ref|XP_002935283.1| PREDICTED: LIM/homeobox protein Lhx3-like [Xenopus (Silurana)
           tropicalis]
          Length = 362

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 20/120 (16%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
           +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++F ++   +L C+ D+
Sbjct: 50  FGTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKGDY 109

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
                              E  + R+     KRPRT +T+ Q    K+++  SPKP R V
Sbjct: 110 -------------------ETAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHV 150


>gi|241999336|ref|XP_002434311.1| lhx3, putative [Ixodes scapularis]
 gi|215496070|gb|EEC05711.1| lhx3, putative [Ixodes scapularis]
          Length = 252

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 22/120 (18%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
           YG KCA C   + P ++V RAQ +VYHL CF C++C + L  G++F ++   +L C+ D+
Sbjct: 24  YGTKCAGCELGIPPTQVVRRAQDNVYHLHCFACILCKRQLNTGDEFYLMEDNKLVCKADY 83

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
           E                     + R+G    KRPRT +T+ Q    KS++  SPKP R V
Sbjct: 84  EA-------------------AKAREGST--KRPRTTITAKQLETLKSAYNNSPKPARHV 122


>gi|47219374|emb|CAG01537.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 390

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 35/202 (17%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   +LP ++V RA+S V+HL CF C+IC + L  GE+
Sbjct: 37  SREGKLYCKNDFFRRFGTKCDGCAQGILPSDLVRRAKSKVFHLNCFTCMICNKQLSTGEE 96

Query: 63  -FILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRD--------------- 102
            +IL   +  C++D+     K+  L+  +S SD  M  ++  P+D               
Sbjct: 97  LYILDEFKFVCKEDYHNCNGKDTILLSVTSCSDPSMSPDSQDPQDDGKDSETGHLSDKDA 156

Query: 103 --------GRRGPKR-PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNI 147
                   G  G +R PRT + + Q    K++F  +PKP R +    S+      R   +
Sbjct: 157 CGNENDEQGAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSQETGLNMRVIQV 216

Query: 148 LTPNQRRQFKSSFEISSMPCRK 169
              N+R + +   ++S++  R+
Sbjct: 217 WFQNRRSKERRMKQLSTLGARR 238


>gi|1621629|gb|AAD12189.1| putative transcription factor LIM-6 [Caenorhabditis elegans]
          Length = 101

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 43  YHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRD 102
           YH  CF C  C +P   G+++ +  G++FCR D++        S+P  D +++E  R   
Sbjct: 1   YHAQCFSCCSCQRPFNLGDEYHVFDGEVFCRNDYQSICNFQTISNP--DPLMEEVVRSEI 58

Query: 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
            R+ PKRPRTIL + QRRQFK++FE S KP RKV
Sbjct: 59  HRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKV 92


>gi|431898835|gb|ELK07205.1| LIM homeobox transcription factor 1-beta, partial [Pteropus alecto]
          Length = 291

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 51/75 (68%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+  KC+ C +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 63  QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 122

Query: 76  FEKEMYLMQQSSPSD 90
           +EKE  L+   SP +
Sbjct: 123 YEKEKDLLSSVSPDE 137


>gi|312075006|ref|XP_003140224.1| hypothetical protein LOAG_04639 [Loa loa]
          Length = 325

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 28/192 (14%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--RS 67
           C    ++ +G KC+ C + + P  +V RA  HVYH+ CF C+IC + L+ GE+F L    
Sbjct: 64  CKDHFYKRFGTKCSMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPTD 123

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
           G+L C+ D+E     M ++  +D   +D N          KRPRT +++      K +++
Sbjct: 124 GRLVCKSDYE-----MAKTKETD---IDSN---------TKRPRTTISAKSLEILKQAYQ 166

Query: 128 VSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            S KP R +       T    R   +   N+R + K    +     R+ G +G   SL  
Sbjct: 167 ASSKPARHIREQLAADTGLDMRVVQVWFQNRRAKEK---RLKKDAGRQWGTYGITKSLDS 223

Query: 182 SLQDSSDSIFAS 193
                +DSI  S
Sbjct: 224 GSASPNDSICES 235


>gi|242011465|ref|XP_002426470.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
 gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
          Length = 394

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR YG KC  C   + P ++V +A+  V+HL CF C++C + L  GE+
Sbjct: 73  SREGKLFCRNDFFRRYGTKCGGCLQGISPSDLVRKARDKVFHLNCFTCMVCRKQLSTGEE 132

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS-------PSDDMMLDENCRPRDGRRGPKR--PRT 112
            ++L   +  C++D     YL  ++S       P       EN  P DG  G KR  PRT
Sbjct: 133 LYVLDDNKFICKED-----YLTGKTSSGSLDGDPETRDSQTENKSPDDGNSGSKRRGPRT 187

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSFEISSM 165
            + + Q    K++F  +PKP R +    +K      R   +   N+R + +   +++SM
Sbjct: 188 TIKAKQLEILKNAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSM 246


>gi|393912072|gb|EFO23845.2| hypothetical protein LOAG_04639 [Loa loa]
          Length = 319

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 28/192 (14%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--RS 67
           C    ++ +G KC+ C + + P  +V RA  HVYH+ CF C+IC + L+ GE+F L    
Sbjct: 58  CKDHFYKRFGTKCSMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPTD 117

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
           G+L C+ D+E     M ++  +D   +D N          KRPRT +++      K +++
Sbjct: 118 GRLVCKSDYE-----MAKTKETD---IDSN---------TKRPRTTISAKSLEILKQAYQ 160

Query: 128 VSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGM 181
            S KP R +       T    R   +   N+R + K    +     R+ G +G   SL  
Sbjct: 161 ASSKPARHIREQLAADTGLDMRVVQVWFQNRRAKEK---RLKKDAGRQWGTYGITKSLDS 217

Query: 182 SLQDSSDSIFAS 193
                +DSI  S
Sbjct: 218 GSASPNDSICES 229


>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
          Length = 214

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G++
Sbjct: 68  SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 128 FYLMEDSRLVCKADY-------------------ETAKQREAESTAKRPRTTITAKQLET 168

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 169 LKNAYNNSPKPARHV 183


>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
 gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
          Length = 401

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 20/122 (16%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-EQFILRSGQLFCRQ 74
           R +G KCA C   + P ++V RAQ  VYHL CF C++C + L  G E +++   +L C+ 
Sbjct: 84  RRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKT 143

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCR 134
           D+                   E  + R+     KRPRT +T+ Q    K+++  SPKP R
Sbjct: 144 DY-------------------ETAKQREADSTAKRPRTTITAKQLETLKNAYNNSPKPAR 184

Query: 135 KV 136
            V
Sbjct: 185 HV 186


>gi|307182932|gb|EFN69942.1| LIM/homeobox protein Awh [Camponotus floridanus]
          Length = 458

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 82/179 (45%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 219 HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSMGAGDWVRRAKDRVYHLACFACDACS 277

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   +     SS        E+C    G +G   KR RT
Sbjct: 278 RQLSTGEQFALLDARLLCKAHYLDVVEGNNTSSS-------EDCDSEHGGKGSKTKRVRT 330

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++ +   SKR   +   N R RQ K S +I +
Sbjct: 331 TFTEEQLAVLQANFQMDSNPDGQDLERIAQVTGLSKRVTQVWFQNSRARQKKHSGKIKT 389



 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 14  GFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
           G+    + C  CG+R      V+      +H  C  C  C +PL       LR  +L+CR
Sbjct: 176 GYDTIEMDCGGCGERG-RERTVLCVGGRTWHSRCLKCYACARPLHDQHSCFLRGMRLYCR 234

Query: 74  QDF 76
            D+
Sbjct: 235 HDY 237


>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
          Length = 432

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 15/124 (12%)

Query: 14  GFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFC 72
           G   YG KCA C   + P E+V RAQ +VYHL CF C++C + L  G++F ++   +L C
Sbjct: 133 GALRYGTKCAGCEKGIPPTEVVRRAQDNVYHLECFACLMCSRQLNTGDEFYLMEDRKLVC 192

Query: 73  RQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP 132
           + D+E       ++   ++  +D            KRPRT +T+ Q    K ++  SPKP
Sbjct: 193 KADYES-----AKARGINEYDIDA---------ANKRPRTTITAKQLEALKRAYNESPKP 238

Query: 133 CRKV 136
            R V
Sbjct: 239 ARHV 242


>gi|322787267|gb|EFZ13403.1| hypothetical protein SINV_03010 [Solenopsis invicta]
          Length = 334

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 94  HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRAKDRVYHLACFACDACS 152

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 153 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 205

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++ +   SKR   +   N R RQ K S +I +
Sbjct: 206 TFTEEQLAVLQANFQMDSNPDGQDLERIAQVTGLSKRVTQVWFQNSRARQKKHSGKIKT 264


>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
          Length = 374

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 20/135 (14%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG-E 61
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL C  C++C + L  G E
Sbjct: 44  SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCNACIVCKRQLATGDE 103

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
            +++   +L C+ D+                   E  + R+     KRPRT +T+ Q   
Sbjct: 104 YYLMEDSRLVCKADY-------------------ETAKQREADSTAKRPRTTITAKQLET 144

Query: 122 FKSSFEVSPKPCRKV 136
            K+++  SPKP R V
Sbjct: 145 LKNAYNNSPKPARHV 159


>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
           [Branchiostoma floridae]
 gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
           [Branchiostoma floridae]
          Length = 292

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           +  + V C     R +G KCA+C   +  ++ V RA++HVYHL CF C  C + L  GE+
Sbjct: 93  TREADVFCKADYIRQFGTKCAKCCRNIQSNDWVRRAKTHVYHLACFACDACKRQLSTGEE 152

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F L  G++ C+  + + M     S    D     +     G   PKR RT  T  Q R  
Sbjct: 153 FALHDGKVLCKSHYLEAMDAAAGSGNGSDCDSLYSGESGSGGHRPKRVRTTFTEEQLRVL 212

Query: 123 KSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           +++F +   P      +++ +   SKR   +   N R + K
Sbjct: 213 QANFNIDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 253


>gi|350404762|ref|XP_003487212.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
          Length = 331

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 91  HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 149

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 150 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 202

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 203 TFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKT 261


>gi|340721085|ref|XP_003398956.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
          Length = 329

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 89  HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 147

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 148 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 200

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 201 TFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKT 259


>gi|380013153|ref|XP_003690632.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
          Length = 332

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  +G RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 77  HDQH-SCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 135

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 136 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKSGNK-AKRVRTTF 191

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSMPCR 168
           T  Q    +++F++   P      +++  T  SKR   +   N R + K       M  +
Sbjct: 192 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKMKGQ 251

Query: 169 KV 170
            V
Sbjct: 252 HV 253



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          ++C  CG+R+     V+      +H  C  C  C +PL       L+  +L+CR D+
Sbjct: 40 MECGGCGERV-RERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDY 95


>gi|380013576|ref|XP_003690828.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
          Length = 351

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 111 HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 169

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 170 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 222

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 223 TFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKT 281


>gi|328781528|ref|XP_001121397.2| PREDICTED: LIM/homeobox protein Awh [Apis mellifera]
          Length = 352

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 112 HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 170

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 171 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 223

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 224 TFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKT 282


>gi|339236721|ref|XP_003379915.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
 gi|316977365|gb|EFV60475.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
          Length = 262

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 21/121 (17%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--RSGQLFCRQD 75
           +G KC+ C + +LP  +V +A  HVYHL CF C +C + ++ G++F L    G++ C+ D
Sbjct: 5   FGTKCSGCKEGILPQAVVRKAHDHVYHLQCFKCAVCEREMKTGDEFYLMPSDGKIVCKGD 64

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
           F+                + +N   +D     KRPRT +++ Q    K ++++SPKP R 
Sbjct: 65  FD----------------ITKN---KDFDNSNKRPRTTISAKQLETLKHAYQLSPKPARH 105

Query: 136 V 136
           V
Sbjct: 106 V 106


>gi|328781496|ref|XP_001121365.2| PREDICTED: LIM/homeobox protein Awh-like [Apis mellifera]
          Length = 332

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  +G RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 77  HDQH-SCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 135

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 136 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKSGNK-AKRVRTTF 191

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSMPCR 168
           T  Q    +++F++   P      +++  T  SKR   +   N R + K       M  +
Sbjct: 192 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKMKGQ 251

Query: 169 KV 170
            V
Sbjct: 252 HV 253



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          ++C  CG+R+     V+      +H  C  C  C +PL       L+  +L+CR D+
Sbjct: 40 MECGGCGERV-RERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDY 95


>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
          Length = 397

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   +LP ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRRFGTKCDGCAQGILPSDLVRRAKSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRD--------------- 102
            ++L   +  C++D+     K+  L+  +S SD  M  ++  P+D               
Sbjct: 104 LYVLDEFKFVCKEDYHNSSGKDTILLSVTSCSDPSMSPDSQDPQDDGKDSETGHLSDKDA 163

Query: 103 --------GRRGPKR-PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNI 147
                   G  G +R PRT + + Q    K++F  +PKP R +    S+      R   +
Sbjct: 164 CGNENDEQGAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSQETGLNMRVIQV 223

Query: 148 LTPNQRRQFKSSFEISSMPCRK 169
              N+R + +   ++S++  R+
Sbjct: 224 WFQNRRSKERRMKQLSTLGSRR 245


>gi|322787264|gb|EFZ13400.1| hypothetical protein SINV_02203 [Solenopsis invicta]
          Length = 333

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG R+Y         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 79  HDQH-SCFLRGMRVYCRHDYALAFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 137

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 138 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKGGNK-AKRVRTTF 193

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSMPCR 168
           T  Q    +++F++   P      +++  T  SKR   +   N R + K       M  +
Sbjct: 194 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKMKGQ 253

Query: 169 KV 170
            V
Sbjct: 254 HV 255



 Score = 37.4 bits (85), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          ++C  CG+R+     V+      +H  C  C  C +PL       LR  +++CR D+
Sbjct: 42 MECGGCGERV-RERTVLCVGGRTWHSRCLRCCACARPLHDQHSCFLRGMRVYCRHDY 97


>gi|340721611|ref|XP_003399211.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
 gi|350404711|ref|XP_003487194.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
          Length = 334

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  +G RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 79  HDQH-SCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 137

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 138 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKSGNK-AKRVRTTF 193

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSMPCR 168
           T  Q    +++F++   P      +++  T  SKR   +   N R + K       M  +
Sbjct: 194 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKMKGQ 253

Query: 169 KV 170
            V
Sbjct: 254 HV 255



 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          ++C  CG+R+     V+      +H  C  C  C +PL       L+  +L+CR D+
Sbjct: 42 MECGGCGERV-RERTVLCVGGRTWHSRCLRCCACARPLHDQHSCFLKGMRLYCRHDY 97


>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
          Length = 402

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 35/202 (17%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KC  C   +LP ++V RA+S V+HL CF CV+C + L  GE+
Sbjct: 44  SRDGRLYCKNDFFRRFGTKCGGCSQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDENCRPRDGRR------------ 105
            +IL   +  C++D++    K+  L+  ++ S+  +  ++  P+D  +            
Sbjct: 104 LYILDEFKFVCKEDYQNSNGKDTILLSVTTCSEPSLSPDSQDPQDDGKDSESGHLSDKDA 163

Query: 106 -----------GPKR-PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNI 147
                      G +R PRT + + Q    K++F  +PKP R +    S+      R   +
Sbjct: 164 CGNDNDEQSAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQV 223

Query: 148 LTPNQRRQFKSSFEISSMPCRK 169
              N+R + +   ++S++  R+
Sbjct: 224 WFQNRRSKERRMKQLSALSARR 245


>gi|324516282|gb|ADY46481.1| Homeobox protein ceh-14 [Ascaris suum]
          Length = 324

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 19/129 (14%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL--RS 67
           C    ++ +G KC+ C + + P  +V RA  HVYH+ CF CVIC + L+ GEQF L    
Sbjct: 66  CKDHFYKRFGTKCSVCEEGICPDSVVRRANDHVYHVACFQCVICKRELRTGEQFYLIPTD 125

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
           G+L C+ D+E     M ++  +D   +D N          KRPRT +++      K +++
Sbjct: 126 GRLVCKTDYE-----MAKNKETD---VDCN---------NKRPRTTISAKSLETLKQAYQ 168

Query: 128 VSPKPCRKV 136
            S KP R V
Sbjct: 169 ASSKPARHV 177


>gi|383857875|ref|XP_003704429.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
          Length = 358

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 26/179 (14%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 118 HDQH-SCFLRGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 176

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRT 112
           + L  GEQF L   +L C+  +   + +++ ++ S      E+C    G +G   KR RT
Sbjct: 177 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSS----SEDCDSEHGGKGSKTKRVRT 229

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
             T  Q    +++F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 230 TFTEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKT 288


>gi|449688145|ref|XP_004211659.1| PREDICTED: homeobox protein unc-4-like [Hydra magnipapillata]
          Length = 352

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 30/148 (20%)

Query: 40  SHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSP--SDDMMLDEN 97
           ++++H+ CF C  C + L+KGE++  ++ +L C+ DF  E       +    DDM  D +
Sbjct: 6   TNLFHIDCFKCQNCGKMLEKGEEYAFKNQKLLCKADFNTEHICDNDETKHDGDDMKHDGD 65

Query: 98  CRPRDG----------------------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
               D                         G KRPRTILT+ QR+ FK++FE +PKPCRK
Sbjct: 66  DIKHDADVFSSSDDSDSMSTTSPSSYEKNSGYKRPRTILTTQQRQNFKTAFEQAPKPCRK 125

Query: 136 VSTMNSK------RAKNILTPNQRRQFK 157
           +    SK      R   +   NQR + K
Sbjct: 126 IREKLSKETGLSVRVVQVWFQNQRAKLK 153


>gi|391342699|ref|XP_003745653.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
           occidentalis]
          Length = 405

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    ++ +G KCA CG  + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 46  SRDGKLYCRSDFYKRFGTKCAGCGQGISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEE 105

Query: 63  -FILRSGQLFCRQDF----EKEMYLMQQSSPSDDMMLDENCR------------------ 99
            ++L   +  C++D+    ++E   +   S  +D  L  N                    
Sbjct: 106 LYVLDENRFICKEDYLNQRQQEKNSLNIISRCNDAGLPPNIEDPALPGLKRPDSGGSGPE 165

Query: 100 ------PRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                 P DG  G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 166 SGQANAPDDGSGGQKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 225

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   +++++  R+
Sbjct: 226 QVWFQNRRSKERRMKQLTTLGARR 249


>gi|383857877|ref|XP_003704430.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
          Length = 371

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  +G RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 117 HDQH-SCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 175

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 176 RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKSGNK-AKRVRTTF 231

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFK 157
           T  Q    +++F++   P      +++  T  SKR   +   N R + K
Sbjct: 232 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQK 280



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 19  GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           G++C  CG+R+     V+      +H  C  C  C +PL       L+  +L+CR D+
Sbjct: 79  GMECGGCGERV-RERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDY 135


>gi|307195464|gb|EFN77350.1| LIM/homeobox protein Awh [Harpegnathos saltator]
          Length = 291

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 20/177 (11%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  +G RLY         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 38  HDQH-SCFLKGMRLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 96

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S D   D     + G +  KR RT  
Sbjct: 97  RQLSTGEQFALLDARLLCKAHY---LDVVEGNNTSSDEGGDSESGHKGGNK-AKRVRTTF 152

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSM 165
           T  Q    +++F++   P      +++  T  SKR   +   N R + K       M
Sbjct: 153 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKM 209



 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          ++C  CG+R+    +V+      +H  C  C  C +PL       L+  +L+CR D+
Sbjct: 1  MECGGCGERVRE-RIVLCVGGRTWHSRCLRCCACARPLHDQHSCFLKGMRLYCRHDY 56


>gi|18858979|ref|NP_571282.1| LIM homeobox 1b [Danio rerio]
 gi|2155289|gb|AAB58796.1| LIM class homeodomain protein [Danio rerio]
 gi|190336839|gb|AAI62280.1| LIM homeobox 1b [Danio rerio]
 gi|190340149|gb|AAI62303.1| LIM homeobox 1b [Danio rerio]
          Length = 402

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 36/203 (17%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR YG KC  C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGRLYCKNDFFRRYGTKCGGCAQGISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSDDMMLDENCRPRDGRR----------- 105
            +IL   +  C++D+      K+  L+  ++ SD  +  E+  P+D  +           
Sbjct: 104 LYILDEYKFVCKEDYLNNSNGKDTNLLSITTCSDPSLSPESQDPQDDYKDSESGPMSDKE 163

Query: 106 -----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKN 146
                      G KR  PRT + + Q    K++F  +PKP R +       T  + R   
Sbjct: 164 TCNNENDEQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 223

Query: 147 ILTPNQRRQFKSSFEISSMPCRK 169
           +   N+R + +   ++S++  R+
Sbjct: 224 VWFQNRRSKERRMKQLSALGARR 246


>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
          Length = 497

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  + + C    FR YG KC  CG  + P ++V +A+  V+HL CF C++C + L  GE+
Sbjct: 194 SRENKLFCRNDFFRRYGTKCGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEE 253

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKR--PRTILTSAQR 119
            ++L   +  C+ D     YL    +         N  P D   G KR  PRT + + Q 
Sbjct: 254 LYVLDDNKFICKDD-----YLNGNKT---------NKSPDDSSAGSKRRGPRTTIKAKQL 299

Query: 120 RQFKSSFEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSFEISSM 165
              K++F  +PKP R +    +K      R   +   N+R + +   +++SM
Sbjct: 300 EILKTAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSM 351


>gi|326668246|ref|XP_685757.4| PREDICTED: LIM/homeobox protein Lhx6 [Danio rerio]
          Length = 270

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C       +G+KCARCG ++  ++ + RA + +YHL CF C  C + L  GE+F 
Sbjct: 77  NKEIFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFG 136

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMM-LDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           L   Q+ CR  ++  +  +QQ S + +++ LD     +   +  KRPRT  TS Q +  +
Sbjct: 137 LMENQVLCRVHYDITLLNLQQLSDNGNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQ 196

Query: 124 SSFEVSPKP 132
           + F     P
Sbjct: 197 THFIRDKNP 205


>gi|1742937|emb|CAA71049.1| Af-ap [Artemia franciscana]
          Length = 267

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           +  S++ C    +RL+G++ C RCG  L P+++VMRA+  +YHL CF C  C Q L KG+
Sbjct: 21  ARGSNIYCRDDYYRLHGIRRCGRCGLVLGPNDLVMRARDFIYHLSCFTCAACNQSLTKGD 80

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLD 95
            F +R G ++CR  F+   +     SP+D +  D
Sbjct: 81  IFGMRDGVVYCRLHFDMLQHGGGSFSPNDSLXGD 114


>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
          Length = 346

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCA+CG ++   + V RA+  VYHL CF C  C + L  GE+F 
Sbjct: 112 NKEIYCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFG 171

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L  G++ CR  ++  +  +++++ S   +  E   P D    P   KR RT  TS Q + 
Sbjct: 172 LVEGRVLCRSHYDIMLDNLRRAAESGTGLTLEGALPSDQDCQPKPAKRARTSFTSEQLQV 231

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 232 MQTQFAQDNNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHK 273


>gi|23893425|emb|CAD12363.1| apterous-1 [Cupiennius salei]
          Length = 253

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 16 RLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
          R++ VK C RC   + P E+VMRA+ HVYHL CF C  C +PL KGE F L+   ++CRQ
Sbjct: 1  RMFSVKRCTRCHLSISPSELVMRAREHVYHLHCFTCATCNKPLTKGEYFGLKDDVIYCRQ 60

Query: 75 DFEKEMYLMQQSSPSDDMMLDEN 97
           +E    L+Q   P   +  +EN
Sbjct: 61 HYE---MLLQYERPYVHLKGEEN 80


>gi|118344350|ref|NP_001071998.1| transcription factor protein [Ciona intestinalis]
 gi|70570117|dbj|BAE06539.1| transcription factor protein [Ciona intestinalis]
          Length = 505

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 83/195 (42%), Gaps = 59/195 (30%)

Query: 21  KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS--GQLFC-----R 73
           +C RC   +   E+V R   H YH+ CF C +C + LQ G+ +++     Q+ C     R
Sbjct: 109 RCRRCAGVIPRDELVRRVIGHPYHVKCFSCDVCHRQLQSGDHYLIDESYNQICCKACHDR 168

Query: 74  QD--FEKEMYLMQQSSPSDDMMLDENCRPR------------------------------ 101
            D  FE      ++ S SD    D++   +                              
Sbjct: 169 DDVIFESCFGAGEEDSASDSEKSDDDVFAQPPMHMAGGAHFSPYHGPPHHMGIMRSKNGS 228

Query: 102 -------------DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSK 142
                        DG+R  KRPRTILT+AQRR+FK+SFEVS KPCRKV       T  S 
Sbjct: 229 KTSPTMQHGSVTSDGKRS-KRPRTILTTAQRRKFKASFEVSQKPCRKVRETLASETGLSP 287

Query: 143 RAKNILTPNQRRQFK 157
           R   +   NQR + K
Sbjct: 288 RVVQVWFQNQRAKMK 302


>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
          Length = 390

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 60  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 119

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                  +  +PR  R         +T+ Q   
Sbjct: 120 FYLMEDSRLVCKADYE---------------TAKQRGQPRGRRPXXXXXXXXITAKQLET 164

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 165 LKSAYNTSPKPARHV 179


>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
          Length = 377

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 47  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 106

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                  +  +PR  R         +T+ Q   
Sbjct: 107 FYLMEDSRLVCKADYE---------------TAKQRGQPRGRRPXXXXXXXXITAKQLET 151

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 152 LKSAYNTSPKPARHV 166


>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
          Length = 301

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 24/155 (15%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS----PSDDMMLD--------------ENCRPRDG 103
            +I+   +  C++D+     + +++S    PS D   D              EN    D 
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSDPSQDDAKDSESANVSDKEAGSNEN---DDQ 160

Query: 104 RRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
             G KR  PRT + + Q    K++F  +PKP R +
Sbjct: 161 NLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHI 195


>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
          Length = 401

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    FR +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 71  SRGESVYCKDDFFRRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F ++   +L C+ D+E                  +  +PR  R         +T+ Q   
Sbjct: 131 FYLMEDSRLVCKADYE---------------TAKQRGQPRGRRPXXXXXXXXITAKQLET 175

Query: 122 FKSSFEVSPKPCRKV 136
            KS++  SPKP R V
Sbjct: 176 LKSAYNTSPKPARHV 190


>gi|332029130|gb|EGI69141.1| LIM/homeobox protein Awh [Acromyrmex echinatior]
          Length = 292

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 20/182 (10%)

Query: 4   HNSHVSCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54
           H+ H SC  RG R+Y         G KCA+CG  +   + V RA+  VYHL CF C  C 
Sbjct: 38  HDQH-SCFQRGMRVYCRHDYDRTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACS 96

Query: 55  QPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTIL 114
           + L  GEQF L   +L C+  +   + +++ ++ S     D     + G +  KR RT  
Sbjct: 97  RQLSTGEQFALLDARLLCKAHY---LDVVEGNNNSSAEGGDSESGHKGGNK-AKRVRTTF 152

Query: 115 TSAQRRQFKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSMPCR 168
           T  Q    +++F++   P      +++ +   SKR   +   N R + K       M  +
Sbjct: 153 TEEQLSVLQANFQLDSNPDGQDLERIAHVTGLSKRITQVWFQNSRARQKKHLHTGKMKGQ 212

Query: 169 KV 170
            V
Sbjct: 213 HV 214


>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
 gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
          Length = 1751

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query: 10   CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
            C     RL+GV+C++CG+    ++ VMRA++++YH+ CF CV+C +PL  G++F LR   
Sbjct: 1368 CKLDYVRLFGVRCSKCGEVFDRNDYVMRAKNNLYHISCFKCVVCTRPLLPGDEFALRHIA 1427

Query: 70   LFCRQDFE 77
            L+C+ D+E
Sbjct: 1428 LYCKADYE 1435


>gi|440808056|gb|AGC24171.1| Lhx3/4, partial [Lymnaea stagnalis]
          Length = 127

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 18/120 (15%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
           +G KCA C   + P E+V RAQ +VYHL CF C++C + L  G++F ++   +L C+ D+
Sbjct: 2   FGTKCASCDKGIPPTEVVRRAQENVYHLDCFACLMCARQLNTGDEFYLMEDRKLVCKTDY 61

Query: 77  EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
           E        ++ + +  +D +          KRPRT +T+ Q    K ++  S KP R V
Sbjct: 62  E--------AAKAREYEMDSS---------NKRPRTTITAKQLEALKRAYNESNKPARHV 104


>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
          Length = 402

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +S + C    FR +G KCA C   + P ++V +A++ V+HL CF C++C + L  GE+
Sbjct: 45  SRDSKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D + DE            
Sbjct: 105 LYIIDENKFVCKEDYTSVSSLKESSLNSVSSCTDRSLSPDLQDPIKDESKETDHSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETTNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
          Length = 406

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS------------------PSDDMMLD---ENCRP 100
            +I+   +  C++D+     L +++S                  PS D   D    N   
Sbjct: 104 LYIIDENKFVCKEDYLSNSSLAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 101 RDG--------RRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
           ++G          G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
          Length = 406

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 45/229 (19%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+ +I+   +  C+
Sbjct: 56  FRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115

Query: 74  QDF------EKEMYLMQQSSPSDDMMLDENCRPR-----------------------DGR 104
           +D+       KE  L   ++ SD  +  ++  P                        D  
Sbjct: 116 EDYLSNSNVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQN 175

Query: 105 RGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEI 162
            G KR  PRT + + Q    K++F  +PKP R +    ++     +   Q R    +   
Sbjct: 176 LGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVR----ALAC 231

Query: 163 SSMPCRKVGVHGH------YLSLGMSLQDSSDSIFASSTKPLNPNHPYS 205
             +P R  G  G+      YL LG       D +       L PN P+S
Sbjct: 232 HPVPQRTTGHSGYPVHARDYLDLGAGXCGRVDRLEPGE---LIPNGPFS 277


>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
 gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
 gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
 gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
          Length = 349

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   M    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERATMGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYNANPRP 206


>gi|190361014|gb|ACE76893.1| Lim1, partial [Emys orbicularis]
          Length = 261

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P  +V RA+S V+HL CF C++C + L  GE+
Sbjct: 10  SREGKLYCKNDFFRCFGTKCAGCAQGISPSNLVRRARSKVFHLNCFTCMMCNKQLSTGEE 69

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS------------------PSDDMMLDE------- 96
            +I+   +  C++D+       +++S                  PS D   D        
Sbjct: 70  LYIIDENKFVCKEDYLNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 129

Query: 97  ----NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
               N    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 130 KEAGNNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 189

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 190 IQVWFQNRRSKERRMKQLSALGARR 214


>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 535

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCA+CG ++   + V RA+  VYHL CF C  C + L  GE+F 
Sbjct: 63  NKEIFCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFG 122

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L  G++ CR  ++  +  +++++ +   +  E   P D    P   KR RT  T+ Q + 
Sbjct: 123 LVEGRVLCRSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQV 182

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            +S F     P     +K++ M   S+R   +   N R + K
Sbjct: 183 MQSQFAQDNNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHK 224


>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
 gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1
 gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
 gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
 gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
          Length = 405

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P+++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C+ D+      K+  L+  ++ SD        D + D+            
Sbjct: 104 LYIIDENKFVCKDDYLSNTNGKDSNLLSVTACSDPSLSPDSQDQLQDDVKDAEIANLSDK 163

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 164 ETGNNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 223

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 224 QVWFQNRRSKERRMKQLSALGARR 247


>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
          Length = 199

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     R +G KCARC   +   + V RA+ HVYHL CF C  C + L  GE+F L  
Sbjct: 48  IYCRADYTRTFGAKCARCSRSISAADWVRRAREHVYHLACFACDACRRQLSTGEEFALHE 107

Query: 68  GQLFCRQDFEKEMYL--MQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSS 125
           G++ C     K  YL  +   S S D    E      GR   KR RT  T  Q    +++
Sbjct: 108 GRVLC-----KTHYLDGLDAGSTSSDETDPEG----GGRSKSKRVRTTFTEEQLHVLQAN 158

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           F +   P      +++ +   SKR   +   N R + K
Sbjct: 159 FLLDSNPDGQDLERIANLTGLSKRVTQVWFQNMRARHK 196



 Score = 37.7 bits (86), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
          CA CG+ L+    +++     +H  C  C +C   L       +R+G ++CR D+ +
Sbjct: 1  CAACGE-LITDRFLIQVSGRTWHSTCLRCSVCRTALDNQPSCFVRAGAIYCRADYTR 56


>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
          Length = 272

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS------------------PSDDMMLD---ENCRP 100
            +I+   +  C++D+     + +++S                  PS D   D    N   
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 101 RDG--------RRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
           ++G          G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
           [Oreochromis niloticus]
          Length = 349

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 25/139 (17%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFEKEMYLMQQSS--PSDDMM-------LDENCRPRDGRRGPKRP------------RTI 113
           D +    +++++S  P D +        L     P   R+   RP            RT+
Sbjct: 132 DHD----VVERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTV 187

Query: 114 LTSAQRRQFKSSFEVSPKP 132
           L   Q    ++ +  +P+P
Sbjct: 188 LNEKQLHTLRTCYNANPRP 206


>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS------------------PSDDMMLD---ENCRP 100
            +I+   +  C++D+     + +++S                  PS D   D    N   
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLNSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 101 RDG--------RRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
           ++G          G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSAAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|371573888|gb|AEX38314.1| Lmx [Mnemiopsis leidyi]
          Length = 428

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 27/156 (17%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR-- 73
           L    C  C   +  +++V R    +YH+ CF C  C   L+KG+++++  +G L C+  
Sbjct: 122 LDASTCCTCNGSINANDLVYRVHGSLYHIRCFTCTRCSSSLRKGDEYVMHGNGDLVCKTC 181

Query: 74  --QDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ----FKSSFE 127
                    YL           +D +CR RD RR  KRPRT+L+S QR++    FK +F+
Sbjct: 182 SDDGLRDHFYL----------GVDPSCR-RD-RREVKRPRTVLSSVQRKEHLSVFKEAFD 229

Query: 128 VSPKPCRK------VSTMNSKRAKNILTPNQRRQFK 157
            +P+PCRK        T  S R   +   NQR + K
Sbjct: 230 RTPRPCRKEREKLSSQTGLSVRVVQVWFQNQRAKVK 265


>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
          Length = 403

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 41  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 100

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 101 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 160

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 161 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 220

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 221 IQVWFQNRRSKERRMKQLSALGARR 245


>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
 gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
 gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
 gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
 gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1
 gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein LMX-2; AltName:
           Full=Homeobox protein Lim-1
 gi|2144068|pir||I58187 homeotic protein lim-1 - rat
 gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
 gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
 gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
 gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
 gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
 gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
 gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
 gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
 gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
 gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
 gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
 gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
 gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
           [Ailuropoda melanoleuca]
          Length = 405

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
 gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
 gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
 gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
 gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
 gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
 gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
 gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
           boliviensis]
 gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
 gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
 gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1
 gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1
 gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
 gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
 gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
 gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
 gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
 gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
 gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
 gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSS------------------PSDDMMLD---ENCRP 100
            +I+   +  C++D+     + +++S                  PS D   D    N   
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 101 RDG--------RRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
           ++G          G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
          Length = 349

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFSCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +  + P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAADPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
           carolinensis]
          Length = 349

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 25/139 (17%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFEKEMYLMQQSS--PSDDMM-------LDENCRPRDGRRGPKRP------------RTI 113
           D +    +++++S  P D +        L     P   R+   RP            RT+
Sbjct: 132 DHD----VVERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTV 187

Query: 114 LTSAQRRQFKSSFEVSPKP 132
           L   Q    ++ +  +P+P
Sbjct: 188 LNEKQLHTLRTCYAANPRP 206


>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
          Length = 310

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCA+CG ++   + V RA+  VYHL CF C  C + L  GE+F 
Sbjct: 76  NKEIFCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFG 135

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L  G++ CR  ++  +  +++++ +   +  E   P D    P   KR RT  T+ Q + 
Sbjct: 136 LVEGRVLCRSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQV 195

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            +S F     P     +K++ M   S+R   +   N R + K
Sbjct: 196 MQSQFAQDNNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHK 237


>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
           [Oreochromis niloticus]
          Length = 357

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 25/139 (17%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFEKEMYLMQQSS--PSDDMM-------LDENCRPRDGRRGPKRP------------RTI 113
           D +    +++++S  P D +        L     P   R+   RP            RT+
Sbjct: 132 DHD----VVERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTV 187

Query: 114 LTSAQRRQFKSSFEVSPKP 132
           L   Q    ++ +  +P+P
Sbjct: 188 LNEKQLHTLRTCYNANPRP 206


>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
 gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1
 gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
           LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
           ..292 [Gallus gallus]
          Length = 406

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
 gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
           1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
           Short=x-Lhx1; Short=xLIM-1
 gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
 gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
 gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
          Length = 403

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF--------EKEMYLMQQSSPS----------DDMMLDENCRPRDG 103
            +I+   +  C++D+        E     +  S PS          DD    E+    D 
Sbjct: 104 LYIIDENKFVCKEDYLNNNNAAKENSFISVTGSDPSLSPESQDPLQDDAKDSESANVSDK 163

Query: 104 RR----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                       G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 164 EAGINENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 223

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 224 QVWFQNRRSKERRMKQLSALGARR 247


>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
           queenslandica]
          Length = 338

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 21/135 (15%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  V C     + +G +CA C   + P ++V RAQ +VYHL CF C IC + L  G++
Sbjct: 133 SRSGQVYCKDDFSKRFGTRCAGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDE 192

Query: 63  FILRSG-QLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F L    +L C+ D+E                        DG +  KRPRT ++  Q   
Sbjct: 193 FYLMDDRKLVCKADYEAAKARA------------------DGSQ--KRPRTTISQKQLDL 232

Query: 122 FKSSFEVSPKPCRKV 136
            K+++ VSPKP R V
Sbjct: 233 LKTAYCVSPKPSRHV 247


>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
          Length = 356

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  VRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   M    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERATMGSGDPLSPLHPARPLQMAADPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYNANPRP 206


>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
           rubripes]
          Length = 331

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRA 131

Query: 75  DFEKEMYLMQQSSPSDDMM--------LDENCRPRDGRRGPKRP------------RTIL 114
           D +    + + S  S D +        L     P   R    RP            RT+L
Sbjct: 132 DHD---VVERASLASGDPLSPLHPARPLQMAAEPVSARTPALRPHVHKQPEKTTRVRTVL 188

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 189 NEKQLHTLRTCYNANPRP 206


>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
          Length = 375

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 141 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFG 200

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ S + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 201 LVEEKVLCRIHYDTMVENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQI 260

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 261 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 302


>gi|328708276|ref|XP_001946004.2| PREDICTED: protein apterous-like [Acyrthosiphon pisum]
          Length = 556

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 5   NSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF 63
           + ++ C     RLYG++ C RC   + P E+VMRA+  V+H+PCF C +C   L KG+QF
Sbjct: 229 DGNIYCKADYQRLYGIRRCGRCHAGISPSELVMRARDTVFHVPCFSCTVCLAVLTKGDQF 288

Query: 64  ILRSGQLFCRQDFEK 78
            +R G +FC+  +++
Sbjct: 289 GMRDGAVFCQHHYQQ 303


>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
          Length = 338

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 21/135 (15%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  V C     + +G +CA C   + P ++V RAQ +VYHL CF C IC + L  G++
Sbjct: 133 SRSGQVYCKDDFSKRFGTRCAGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDE 192

Query: 63  FILRSG-QLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F L    +L C+ D+E                        DG +  KRPRT ++  Q   
Sbjct: 193 FYLMDDRKLVCKADYEAAKARA------------------DGSQ--KRPRTTISQKQLDL 232

Query: 122 FKSSFEVSPKPCRKV 136
            K+++ VSPKP R V
Sbjct: 233 LKTAYCVSPKPSRHV 247


>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
          Length = 396

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SRDGKLYCKMDFFRRFGTKCAGCLQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSS-------------PSDDMMLDENCRPRDG 103
            +++   +  C++DF      KE  L   SS               DD+   +N    D 
Sbjct: 105 LYVIDENKFVCKEDFLSSGATKEANLNSVSSCTDRSLSPDLQDPTQDDIKETDNSTSSDK 164

Query: 104 RR----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                       G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETNNIENEEQNSGTKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|8248965|gb|AAC60669.2| lateral and intermediate mesoderm differentiation and neurogenesis
           protein [Mus sp.]
          Length = 407

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R +     ++S++  R+
Sbjct: 224 IQVWFQNRRSKEARMKQLSALGARR 248


>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 579

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P+++V +A+S V+HL CF C++C + L  GE+
Sbjct: 204 SRDGKLYCKMDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 263

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSS-------------PSDDMMLDENCRPRDG 103
            +++   +  C++DF      KE  L   SS               DD+   +N    D 
Sbjct: 264 LYVIDENKFVCKEDFLSSGAIKEANLNSVSSCTDRSLSPDLQDPTQDDIKETDNSTSSDK 323

Query: 104 RR----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                       G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 324 ETNNIENEEQNSGTKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVI 383

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 384 QVWFQNRRSKERRMKQLSALGARR 407


>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
          Length = 349

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTWYAANPRP 206


>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
 gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
 gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
          Length = 375

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 141 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 200

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ S   +  E   P +    P   KR RT  T+ Q + 
Sbjct: 201 LVEEKVLCRIHYDTMVENLKRAAESGSGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 260

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 261 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 302


>gi|56694836|gb|AAW23080.1| Lim3 [Oikopleura dioica]
          Length = 289

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 18/133 (13%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-F 63
           +  + C    ++ YG KCA C + + P E++ +A  H YHL CF C +C +  + G+  F
Sbjct: 83  DDQLLCRVDFYKRYGNKCASCNEGIEPSEVIQKAGDHSYHLECFHCAVCDRRFETGDHFF 142

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           +L   +L C++D+E                 D   R        KRPRT +T+ Q    K
Sbjct: 143 LLEDKRLVCKEDYE-----------------DAKMREGQDDGNIKRPRTTITAKQLDVLK 185

Query: 124 SSFEVSPKPCRKV 136
            +++ S KP R V
Sbjct: 186 QAYQQSSKPARHV 198


>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
 gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
 gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
 gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
 gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
          Length = 402

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A++ V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D + DE            
Sbjct: 105 LYIIDENKFVCKEDYASASSLKESSLNSVSSCTDRSLSPDLQDPIQDESKETDHSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
          Length = 359

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 82  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 141

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 142 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYAANPRP 216


>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
          Length = 373

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 139 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFG 198

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ S + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 199 LVEEKVLCRIHYDTMVENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQI 258

Query: 122 FKSSF 126
            ++ F
Sbjct: 259 MQAQF 263



 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           CA CG  +L    +++  + ++H+ C  C +C   L++     +++ ++FC+ D+
Sbjct: 95  CASCGQEIL-DRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDY 148


>gi|290753132|dbj|BAI79511.1| apterous [Pedetontus unimaculatus]
          Length = 222

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 6  SHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           ++ C    +RL+G+K C+RC   +   E+VMRA+ HV+H+PCF CV C   L KG+ F 
Sbjct: 1  GNIYCKKDYYRLFGIKRCSRCHAAISSSELVMRARDHVFHVPCFTCVTCNVALTKGDHFG 60

Query: 65 LRSGQLFCRQDFEKEM 80
          ++   +FCR  +E  M
Sbjct: 61 MQENAVFCRLHYEMAM 76


>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
          Length = 392

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCA+CG ++   + V RA+  VYHL CF C  C + L  GE+F 
Sbjct: 158 NKEIYCKLDYFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFG 217

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L  G++ CR  ++  +  +++++ +   +  E   P D    P   KR RT  T+ Q + 
Sbjct: 218 LVEGRVLCRSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQV 277

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 278 MQTQFAQDNNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHK 319


>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
          Length = 268

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +  S P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGASDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
           rubripes]
          Length = 359

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+  VYH+ CF C +CC+ L  G++F LR  +L CR D
Sbjct: 83  RLFGIKCAKCNMGFCSSDLVMRARDSVYHMECFRCSVCCRHLLPGDEFSLREDELLCRAD 142

Query: 76  FEKEMYLMQQSSP-------------SDDMMLDENCRPRDGRRGPK------RPRTILTS 116
               M      SP             SD + +     P     G K      R RT+LT 
Sbjct: 143 HCLLMERASAGSPLSPGTIHSRPLHISDAVTVRHP--PHHRNHGHKQSEKTTRIRTVLTE 200

Query: 117 AQRRQFKSSFEVSPKP 132
            Q    ++ +  +P+P
Sbjct: 201 KQLHTLRTCYNANPRP 216


>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
           leucogenys]
          Length = 374

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 32/154 (20%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+ +I+   +  C+
Sbjct: 56  FRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115

Query: 74  QDF------EKEMYLMQQSSPSDDMMLDENCRPR-----------------------DGR 104
           +D+       KE  L   ++ SD  +  ++  P                        D  
Sbjct: 116 EDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQN 175

Query: 105 RGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
            G KR  PRT + + Q    K++F  +PKP R +
Sbjct: 176 LGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHI 209


>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
          Length = 396

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P+++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SRDGKLYCKMDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSS-------------PSDDMMLDENCRPRDG 103
            +++   +  C++D+      KE+ L   SS               DD+   +N    D 
Sbjct: 105 LYVIDENKFVCKEDYLSPGSIKEVSLNSVSSCTDRSLSPDLPDPTQDDIKETDNSTSSDK 164

Query: 104 RR----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
                       G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETNNIENEEQNSGAKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|307182931|gb|EFN69941.1| LIM/homeobox protein Awh [Camponotus floridanus]
          Length = 258

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +G KCA+C   +   + V RA+  VYHL CF C  C + L  GEQF L   +L C+  
Sbjct: 24  RAFGAKCAKCRRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALVDARLLCKAH 83

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
           +   + +++ ++ S D   D     + G +  KR RT  T  Q    +++F++   P   
Sbjct: 84  Y---LDVVEGNNTSSDEGGDSESGHKGGNKA-KRVRTTFTEEQLSVLQANFQLDSNPDGQ 139

Query: 133 -CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
              +++ +   SKR   +   N R + K       M  + V
Sbjct: 140 DLERIAHVTGLSKRVTQVWFQNSRARQKKHLHTGKMKGQHV 180


>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
           tropicalis]
          Length = 389

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 140 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFG 199

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 200 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 259

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 260 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 301


>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
          Length = 400

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+  V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D M D+            
Sbjct: 105 LYIIDENKFVCKEDYLSSASLKEGSLNSVSSCTDRSLSPDLQDPMQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETTNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
          Length = 304

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    FR +GVK CARCG  +  HEMVMRA+S VYHL CF C  C   L  G+ + +R
Sbjct: 95  IYCKEHYFRRFGVKKCARCGTGIAAHEMVMRARSLVYHLSCFTCSACSMALTTGDYYGMR 154

Query: 67  SGQLFCRQDFE 77
             Q++CR  +E
Sbjct: 155 DTQVYCRLHYE 165


>gi|196011854|ref|XP_002115790.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
 gi|190581566|gb|EDV21642.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
          Length = 292

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 34/166 (20%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    +R YG KC+ CG  + P+E+V RA+  VYH+ C  C IC + +  GEQ
Sbjct: 44  SRDGKLYCRNDFYRTYGTKCSGCGIGIPPNELVRRARDDVYHIKCLKCAICGRQMSTGEQ 103

Query: 63  -FILRSGQLFCRQDF------------------------------EKEMYLMQQSSPSDD 91
            +I +  Q  C+ D+                              E E   +  ++  DD
Sbjct: 104 LYINQHNQYICQADYQNSISSTNTSLNDQSLTDDKEDDNSDYDEKEDETEDLLDNNNEDD 163

Query: 92  MMLDENCRPRDGRRGPKR-PRTILTSAQRRQFKSSFEVSPKPCRKV 136
           +  D +     G    KR PRT + + Q    K++F ++PKP R +
Sbjct: 164 LQADND--NESGNNCKKRGPRTTIKTEQLEMLKNAFAITPKPTRLI 207


>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
           harrisii]
          Length = 335

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N    C     RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F 
Sbjct: 47  NGKTYCKRDYIRLFGIKCAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFS 106

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSP------SDDMMLDENCRPRDGRRGPKRP-------- 110
           LR  +L CR D    +      SP      +    L  +  P  GR+   RP        
Sbjct: 107 LREHELLCRADHSLLLDRASAESPRSPGHLASSRSLHLSAEPGSGRQPSLRPHVHKQTEK 166

Query: 111 ----RTILTSAQRRQFKSSFEVSPKP 132
               RT+L   Q    ++ +  +P+P
Sbjct: 167 TTRVRTVLNEKQLHTLRTCYAANPRP 192


>gi|326931564|ref|XP_003211898.1| PREDICTED: LIM/homeobox protein Lhx1-like [Meleagris gallopavo]
          Length = 222

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 32/151 (21%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQDF 76
           +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+ +I+   +  C++D+
Sbjct: 6   FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 65

Query: 77  ------EKEMYLMQQSSPSDDMMLDENCRPR-----------------------DGRRGP 107
                  KE  L   ++ SD  +  ++  P                        D   G 
Sbjct: 66  LNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGA 125

Query: 108 KR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
           KR  PRT + + Q    K++F  +PKP R +
Sbjct: 126 KRRGPRTTIKAKQLETLKAAFAATPKPTRHI 156


>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
          Length = 340

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 63  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 122

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 123 DHDVVERASLGTGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 182

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 183 QLHTLRTCYAANPRP 197


>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
 gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
 gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
 gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
          Length = 354

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +  S P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGGSDPLSPLHPGRPLQMAAEPICARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
 gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
 gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
 gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
 gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
 gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
 gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
           leucogenys]
 gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
           troglodytes]
 gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
           africana]
 gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
           lupus familiaris]
 gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
           porcellus]
 gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
           griseus]
 gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
           garnettii]
 gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
 gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
 gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
           boliviensis]
 gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
 gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
 gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
 gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
 gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
 gi|2137056|pir||I67418 transcription factor isl-1 - hamster
 gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
 gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
 gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
 gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
 gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
 gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
           sapiens]
 gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
           construct]
 gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
 gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
 gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
           musculus]
 gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
 gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
 gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
 gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
 gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
 gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
 gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
 gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
          Length = 326

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTRYAANPRP 206


>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
           domestica]
 gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
           [Sarcophilus harrisii]
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLNPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
           [Ornithorhynchus anatinus]
          Length = 382

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 105 IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 164

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 165 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 224

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 225 QLHTLRTCYAANPRP 239


>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
           melanoleuca]
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGTGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
           construct]
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
          Length = 396

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P+++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SRDGKLYCKIDFFRRFGTKCAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE+ L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSGAIKEVNLNSVSSCTDRSLSPDLQDPIQDDIKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETNNIENEEQNSGAKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
          Length = 346

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 69  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 128

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 129 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 188

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 189 QLHTLRTCYAANPRP 203


>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
          Length = 349

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
           [Sarcophilus harrisii]
          Length = 354

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|313234650|emb|CBY10605.1| unnamed protein product [Oikopleura dioica]
          Length = 289

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 18/133 (13%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-F 63
           +  + C    ++ YG KCA C + + P E++ +A  H YHL CF C +C +  + G+  F
Sbjct: 83  DDQLLCRVDFYKRYGNKCASCNEGIEPSEVIRKAGDHSYHLECFHCAVCDRRFETGDHFF 142

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFK 123
           +L   +L C++D+E                 D   R        KRPRT +T+ Q    K
Sbjct: 143 LLEDKRLVCKEDYE-----------------DAKMREGQDDGNIKRPRTTITAKQLDVLK 185

Query: 124 SSFEVSPKPCRKV 136
            +++ S KP R V
Sbjct: 186 QAYQQSSKPARHV 198


>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
          Length = 348

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKKAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|289541370|gb|ADD09808.1| LIM-homeodomain transcription factor islet protein [Branchiostoma
           belcheri]
          Length = 250

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 27/141 (19%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ 
Sbjct: 32  VRLFGTKCAKCSLGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKT 91

Query: 75  DFEKEMYLMQQSSPSDD---------MMLDENCRPR-----DGRR---------GPKRPR 111
           D E    +++++S + D           L+   RP      D RR          P R R
Sbjct: 92  DHE----VLERASNNVDSNGRASLGSTDLEMATRPESHGRSDQRRPQVHKQDGHKPTRVR 147

Query: 112 TILTSAQRRQFKSSFEVSPKP 132
           T+L   Q    ++ +  +P+P
Sbjct: 148 TVLNEKQLHTLRTCYAANPRP 168


>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
          Length = 414

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 30/147 (20%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KCARC +    ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ D
Sbjct: 78  RLFGTKCARCTESFSKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRDDGLFCKSD 137

Query: 76  FEKEMYLMQQSSPS---------------DDMMLDENCRPRDG------RRG-------- 106
            E        ++P+                ++  ++    + G      RRG        
Sbjct: 138 HEVLERAQNGATPTPENNNNNVNALNNNEKEIKTEKTGSIKSGQAEHGSRRGNSGHKSEH 197

Query: 107 -PKRPRTILTSAQRRQFKSSFEVSPKP 132
            P R RT+L   Q    ++ +  +P+P
Sbjct: 198 KPTRVRTVLNEKQLHTLRTCYNANPRP 224


>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
          Length = 383

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 106 IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 165

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 166 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 225

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 226 QLHTLRTCYAANPRP 240


>gi|432095418|gb|ELK26617.1| LIM homeobox transcription factor 1-beta [Myotis davidii]
          Length = 76

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 27  DRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQS 86
           +++ P E VMRA   VYHL CF C +C + L+KG++F+L+ GQL C+ D+EKE  L+   
Sbjct: 2   EKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSV 61

Query: 87  SPSDDMMLDENCRPRDG 103
           SP +     E C  R G
Sbjct: 62  SPDE----SEGCWGRAG 74


>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
 gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
          Length = 465

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S + ++ C    +RL+G+K CARC   ++  E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 172 SRDGNIYCKKDYYRLFGMKRCARCQATIISSELVMRARDLVFHVHCFSCAVCNSPLTKGD 231

Query: 62  QFILRSGQLFCRQDFE 77
            F +R G + CR  FE
Sbjct: 232 HFGMRDGAVLCRLHFE 247


>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
 gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
           musculus]
          Length = 326

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
          Length = 260

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
          Length = 408

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 39/206 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   + P+++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGRLYCKNDFFRRFGTKCGGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF-----EKEMYLM-------------QQSSPSDDMMLDE------- 96
            +I+   +  C++D+      K+  L+              Q    DD++L +       
Sbjct: 104 LYIIDENKFVCKEDYLSNSNGKDTNLLSVTTCSDPSLSPDSQDQLQDDVVLKDTEIAALS 163

Query: 97  -----NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKR 143
                N    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R
Sbjct: 164 DKETVNNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMR 223

Query: 144 AKNILTPNQRRQFKSSFEISSMPCRK 169
              +   N+R + +   ++S++  R+
Sbjct: 224 VIQVWFQNRRSKERRMKQLSALGARR 249


>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
           subclass-like [Saccoglossus kowalevskii]
          Length = 283

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + + ++ C     R +G KC+RC   +  ++ V +A++HVYHL CF C  C + L  GE+
Sbjct: 64  TKDDNIYCKMDYIRQFGTKCSRCMRNIQSNDWVRKAKNHVYHLACFACDNCKRQLSTGEE 123

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F ++  ++ C+  + + +      S + + ML +N   R   R  KR RT  T  Q +  
Sbjct: 124 FAMQENKVLCKTHYLELLENSSDCSETKEGML-QNGHSRHNPR-TKRVRTTFTEEQLQVL 181

Query: 123 KSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSMPC 167
           +++F V   P      +++ +   SKR   +   N R + K      + PC
Sbjct: 182 QANFNVDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHTTSKTSPC 232


>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
          Length = 332

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA CG  + P ++V +A+  V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCGQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
          Length = 402

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A++ V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D M D+            
Sbjct: 105 LYIIDENKFVCKEDYLNSPSLKEGSLNSVSSCTDRSLSPDLQDPMQDDTKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETTNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
 gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
          Length = 304

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + +  + C     R +G KCARCG  +  ++ V RA++ VYHL CF C  C + L  GE+
Sbjct: 70  TKDGKIYCKADYARQFGTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEE 129

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMM-------LDENCRP---RDGRRGPKRPRT 112
           F L+ G + C+  + + +     +SP++          +D +  P   + GR   KR RT
Sbjct: 130 FALKDGHVLCKLHYLEAL----DTSPAERDYQEVFSPDVDGDDSPNSLKSGRHKAKRVRT 185

Query: 113 ILTSAQRRQFKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
             T  Q +  +++F +   P      +++ +   SKR   +   N R + K
Sbjct: 186 TFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQVWFQNSRARQK 236


>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
          Length = 407

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 39/206 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   + P+++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGRLYCKNDFFRRFGTKCGGCSQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF-----EKEMYLM-------------QQSSPSDDMMLDE------- 96
            +I+   +  C+ D+      K+  L+              Q    DD++L +       
Sbjct: 104 LYIIDENKFVCKDDYLNNTSVKDTNLLSVTACSDPSLSPDSQDQLQDDVVLKDTEIATLS 163

Query: 97  -----NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKR 143
                N    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R
Sbjct: 164 DKETVNNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMR 223

Query: 144 AKNILTPNQRRQFKSSFEISSMPCRK 169
              +   N+R + +   ++S++  R+
Sbjct: 224 VIQVWFQNRRSKERRMKQLSALGARR 249


>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
          Length = 306

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 408

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 39/206 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   + P+++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGRLYCKNDFFRRFGTKCGGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF-----EKEMYLM-------------QQSSPSDDMMLDE------- 96
            +I+   +  C++D+      K+  L+              Q    DD++L +       
Sbjct: 104 LYIIDENKFVCKEDYLSNSNVKDTNLLSVTTCSDPSLSPDSQDQLQDDVVLKDTEIAALS 163

Query: 97  -----NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKR 143
                N    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R
Sbjct: 164 DKETVNNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMR 223

Query: 144 AKNILTPNQRRQFKSSFEISSMPCRK 169
              +   N+R + +   ++S++  R+
Sbjct: 224 VIQVWFQNRRSKERRMKQLSALGARR 249


>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
          Length = 419

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 27/141 (19%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ 
Sbjct: 70  VRLFGTKCAKCSLGFTKNDFVMRAKNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKA 129

Query: 75  DFEKEMYLMQQSSPSDD---------MMLDENCRPR-----DGRR---------GPKRPR 111
           D E    +++++S + D           L+   RP      D RR          P R R
Sbjct: 130 DHE----VLERASNNVDSNGRASLGSTDLEMATRPESHGRSDQRRPQVHKQDGHKPTRVR 185

Query: 112 TILTSAQRRQFKSSFEVSPKP 132
           T+L   Q    ++ +  +P+P
Sbjct: 186 TVLNEKQLHTLRTCYAANPRP 206


>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
 gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
          Length = 348

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|183985542|gb|AAI66037.1| isl1 protein [Xenopus (Silurana) tropicalis]
          Length = 335

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +  S P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGASDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
 gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
          Length = 329

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 24/138 (17%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ 
Sbjct: 72  VRLFGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKA 131

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--------------------PKRPRTIL 114
           D E    ++++++ +       N   R  + G                    P R RT+L
Sbjct: 132 DHE----IVEKATATAQATHVRNNGQRSSQSGGQTNGQTTPDSTPSKRKTDRPTRVRTVL 187

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 188 NEKQLHTLRTCYNANPRP 205


>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
          Length = 303

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 154 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 213

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ S   +  E   P +    P   KR RT  T+ Q + 
Sbjct: 214 LVEEKVLCRIHYDTMVENLKRAAESGSGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 273

Query: 122 FKSSFEVSPKP 132
            ++ F     P
Sbjct: 274 MQAQFAQDNNP 284


>gi|61287134|dbj|BAD91092.1| transcription factor Lmx1b [Danio rerio]
          Length = 119

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 25 CGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQ 84
          C +++ P E VMRA   VYHL CF C +C +  +KG++F+L+ GQL C+ D+E+E  L+ 
Sbjct: 1  CMEKIAPTEFVMRALECVYHLNCFCCCVCDRQQRKGDEFVLKDGQLXCKSDYEREKDLLG 60

Query: 85 QSSPSD 90
            SP D
Sbjct: 61 SVSPDD 66


>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 373

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 139 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 198

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 199 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 258

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 259 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 300


>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
          Length = 377

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
           [Branchiostoma floridae]
 gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
           [Branchiostoma floridae]
          Length = 430

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 27/141 (19%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ 
Sbjct: 81  VRLFGTKCAKCSLGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKA 140

Query: 75  DFEKEMYLMQQSSPSDD---------MMLDENCRPR-----DGRR---------GPKRPR 111
           D E    +++++S + D           L+   RP      D RR          P R R
Sbjct: 141 DHE----VLERASNNVDSNGRASLGSTDLEMATRPESHGRSDQRRPQVHKQDGHKPTRVR 196

Query: 112 TILTSAQRRQFKSSFEVSPKP 132
           T+L   Q    ++ +  +P+P
Sbjct: 197 TVLNEKQLHTLRTCYAANPRP 217


>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
          Length = 293

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
          Length = 336

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 92  NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 151

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 152 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 211

Query: 122 FKSSF 126
            ++ F
Sbjct: 212 MQAQF 216


>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
          Length = 363

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKKAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGFSRRVIQVWFQNCRARHK 275


>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
          Length = 377

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|229619776|dbj|BAH58087.1| LIM homeobox protein 1 [Nematostella vectensis]
          Length = 358

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    +R YG KC+ C   + P++MV RA+  V+H+ CFVC  C + +  G++
Sbjct: 45  SREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDE 104

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMM---------LDENCRPRDGRRGPKR--P 110
            + +  G   CR D     Y     +  DD +         LDE+    D     KR  P
Sbjct: 105 LYYIGDGSFICRDD-----YYHSHPTNLDDAIDEPKDLSYGLDEDL---DAALASKRRGP 156

Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV 136
           RT + + Q    KS+F  +PKP R +
Sbjct: 157 RTTIKAKQLEALKSTFAATPKPSRNI 182


>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
          Length = 366

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
          Length = 380

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 146 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 205

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 206 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 265

Query: 122 FKSSF 126
            ++ F
Sbjct: 266 MQAQF 270


>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
          Length = 391

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 142 NKEIFCKMDYFSRFGTKCARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 201

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 202 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 261

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 262 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 303


>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
          Length = 377

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
          Length = 363

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
 gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
 gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
           bp 517 .. 669; amino acid feature: homeodomain, bp 820
           .. 999 [Gallus gallus]
          Length = 349

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA++ VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 360

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R++G+KCA+C       ++VMRA+ +VYH+ CF C +CC+ L  G++F LR  +L CR D
Sbjct: 83  RIFGIKCAKCNVGFCSSDLVMRARDNVYHMECFRCSVCCRHLLPGDEFSLREDELLCRAD 142

Query: 76  FEKEMYLMQQSSP-------------SDDMMLDENCRPRD----GRRGPKRPRTILTSAQ 118
               M      SP             SD + +      R+          R RT+LT  Q
Sbjct: 143 HCLLMERASAGSPLSPGPIHSRPLHISDAVSVRHPPHHRNHVHKQSEKTTRIRTVLTEKQ 202

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 203 LHTLRTCYNANPRP 216


>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
 gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
           6; AltName: Full=LIM/homeobox protein Lhx6.1
 gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
          Length = 363

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
 gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
          Length = 409

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 41/208 (19%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------------EKEMYLMQQSSPS----------DDMMLDENCR 99
            +I+   +  C++D+            E     +  S PS          DD    E+  
Sbjct: 104 LYIIDENKFVCKEDYLNNNNNNNNAAKENSFISVTGSDPSLSPESQDPLQDDAKDSESAN 163

Query: 100 PRDGRR----------GPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNS 141
             D             G KR  PRT + + Q    K++F  +PKP R +       T  +
Sbjct: 164 ISDKEAGVNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLN 223

Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRK 169
            R   +   N+R + +   ++S++  R+
Sbjct: 224 MRVIQVWFQNRRSKERRMKQLSALGARR 251


>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
          Length = 388

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 139 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 198

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 199 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 258

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 259 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 300


>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
 gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
 gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
 gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
          Length = 402

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
 gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
 gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
 gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
 gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
           5
 gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
 gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
 gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
 gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
          Length = 402

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
          Length = 363

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
 gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 388

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 139 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 198

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 199 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 258

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 259 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 300


>gi|3319761|emb|CAA04011.1| Lhx6 protein [Mus musculus]
          Length = 361

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCA CG ++   + V RA+ + YHL CF C  C + +  GE+F+
Sbjct: 132 NKEIYCKMDYFSRFGTKCALCGRQIYASDWVRRARGNAYHLACFACFSCKRHVSTGEEFV 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++FCR  ++  +  +++++ + +++  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVFCRIHYDTMIENLKRAAENGNVLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|322785895|gb|EFZ12514.1| hypothetical protein SINV_13953 [Solenopsis invicta]
          Length = 144

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSH-VYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           R++GVKCARC +++   ++VMR  S  ++H+ CF C +C Q L +G  +ILR GQ  CR+
Sbjct: 71  RIFGVKCARCMEKISCSDLVMRPVSGLIFHVECFACCMCGQSLPRGAHYILRQGQPICRR 130

Query: 75  DFEKEMYL 82
           DFE E++L
Sbjct: 131 DFEHELFL 138


>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
           gorilla]
          Length = 393

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 15/113 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFEKEMYLMQQSS-----------PSDDMMLDENCRPRDGRRGPKRPRTILTS 116
           D +    +++++S           P+  + +     P  GR+ P R   +  S
Sbjct: 132 DHD----VVERASLGAGDPLSPLHPARPLQMAGTPLPGSGRQAPARFNALTVS 180


>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
          Length = 402

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C++D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKEDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|432094974|gb|ELK26382.1| LIM/homeobox protein Lhx5 [Myotis davidii]
          Length = 315

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 49  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 108

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 109 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 168

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 169 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 228

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 229 QVWFQNRRSKERRMKQLSALGARR 252


>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
          Length = 392

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
          Length = 377

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
          Length = 395

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 146 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 205

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 206 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 265

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 266 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 307


>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
          Length = 364

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 115 NKEIFCKVDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 174

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 175 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 234

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 235 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 276


>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
          Length = 392

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
 gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
          Length = 402

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
          Length = 313

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 69  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 128

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 129 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 188

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 189 QLHTLRTCYAANPRP 203


>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
          Length = 363

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
          Length = 392

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
          Length = 366

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
          Length = 392

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
 gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
           6; AltName: Full=LIM/homeobox protein Lhx6.1
 gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
 gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
 gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
 gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
 gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
 gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
 gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
           boliviensis]
          Length = 385

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFTCFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
          Length = 381

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 252 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 293


>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
 gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
 gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
          Length = 392

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
          Length = 377

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 128 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 187

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 188 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 247

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 248 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 289


>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
           guttata]
          Length = 349

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA++ VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 DHDVVERASLGGGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
 gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
          Length = 392

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|395735796|ref|XP_003776642.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-1
           [Pongo abelii]
          Length = 382

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 75  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 134

Query: 75  D 75
           D
Sbjct: 135 D 135


>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
          Length = 303

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYIIDENKFVCKEDYLNSPSVKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETTNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
          Length = 360

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 116 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 175

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 176 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 235

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 236 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 277


>gi|61200414|gb|AAX39779.1| ISL1 transcription factor, partial [Ovis aries]
          Length = 243

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 30  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 89

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 90  DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 149

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 150 QLHTLRTCYAANPRP 164


>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
           scrofa]
          Length = 332

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
          Length = 377

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
          Length = 360

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 116 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 175

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 176 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 235

Query: 122 FKSSF 126
            ++ F
Sbjct: 236 MQAQF 240


>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
          Length = 348

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
          Length = 392

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
          Length = 392

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 263 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 304


>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
          Length = 363

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 234 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275


>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
 gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
 gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
           5; AltName: Full=Homeobox protein LIM-2
 gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
           5
 gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
           feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
           bp 550 .. 705 [Rattus norvegicus]
 gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
 gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
 gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
 gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
 gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
 gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
 gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
          Length = 402

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
          Length = 366

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
 gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
          Length = 348

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
          Length = 348

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
          Length = 366

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
          Length = 366

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
          Length = 348

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
 gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
           5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
           AltName: Full=xLIM-2A
 gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
 gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
          Length = 402

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A++ V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +I+   +  C++D+      KE  L   SS +D        D + DE            
Sbjct: 105 LYIIDENKFVCKEDYISASSLKESSLNSVSSCTDRSLSPDIQDPIQDESKETDHSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
          Length = 390

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 141 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 200

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 201 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 260

Query: 122 FKSSF 126
            ++ F
Sbjct: 261 MQAQF 265


>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
 gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
          Length = 377

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
           anubis]
          Length = 390

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
           boliviensis]
          Length = 381

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 252 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 293


>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
          Length = 349

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE 77
           D +
Sbjct: 132 DHD 134


>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
          Length = 366

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
          Length = 377

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
           familiaris]
          Length = 363

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 233

Query: 122 FKSSF 126
            ++ F
Sbjct: 234 MQAQF 238


>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
          Length = 366

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
          Length = 349

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA 131

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           + +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 132 EHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 191

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 192 QLHTLRTCYAANPRP 206


>gi|46394864|gb|AAS91588.1| Lim1 [Oryctolagus cuniculus]
          Length = 348

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 38/190 (20%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQDF 76
           +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+ +I+   +  C++D+
Sbjct: 1   FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60

Query: 77  ------EKEMYLMQQSSPSDDMMLDENCRPR-----------------------DGRRGP 107
                  KE  L   ++ SD  +  ++  P                        D   G 
Sbjct: 61  LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGA 120

Query: 108 KR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSS 159
           KR  PRT + + Q    K++F  +PKP R +       T  + R   +   N+R + +  
Sbjct: 121 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRM 180

Query: 160 FEISSMPCRK 169
            ++S++  R+
Sbjct: 181 KQLSALGARR 190


>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
          Length = 354

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|297662848|ref|XP_002809900.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
           1-alpha [Pongo abelii]
          Length = 489

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           +L+ VKC  C + + P+E VMRAQ  VYHL CF C +C + LQ G++F+L+      R D
Sbjct: 88  KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQXGDEFVLKRAAALQR-D 146

Query: 76  FEKEMYLMQQS 86
           +EKE  L+  S
Sbjct: 147 YEKERELLSLS 157



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 7/63 (11%)

Query: 101 RDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRR 154
           +D +R PKRPRTILT+ QRR FK+SFEVS KPCRKV       T  S R   +   NQR 
Sbjct: 297 KDHKR-PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRA 355

Query: 155 QFK 157
           + K
Sbjct: 356 KMK 358



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
           KR + ILT  QRR FK+SFE+SS PCRKV
Sbjct: 303 KRPRTILTTQQRRAFKASFEVSSKPCRKV 331


>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
 gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
          Length = 366

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
           boliviensis]
          Length = 366

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
           familiaris]
          Length = 392

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 262

Query: 122 FKSSF 126
            ++ F
Sbjct: 263 MQAQF 267


>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
          Length = 235

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 74  NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 133

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 134 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 193

Query: 122 FKSSFEVSPKP 132
            ++ F     P
Sbjct: 194 MQAQFAQDNNP 204


>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
 gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
           5; AltName: Full=Homeobox protein LIM-5
 gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
 gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
          Length = 399

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 43/207 (20%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 45  SRDGKLYCKIDFFRRFGTKCAGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSSPSDDMM-------LDENCRPRDG------ 103
            +++   +  C++D+      KE+ L   SS +D  +       + ++ +  D       
Sbjct: 105 LYVIDENKFVCKEDYLSASAIKEVNLNSVSSCTDRSLSPDLPDQIQDDTKETDNSTSSDK 164

Query: 104 ---------------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSK 142
                          RRG   PRT + + Q    K++F  +PKP R +       T  + 
Sbjct: 165 DTNNNENEEQNSCTKRRG---PRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNM 221

Query: 143 RAKNILTPNQRRQFKSSFEISSMPCRK 169
           R   +   N+R + +   ++S++  R+
Sbjct: 222 RVIQVWFQNRRSKERRMKQLSALGARR 248


>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
 gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
 gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
          Length = 402

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
           [Equus caballus]
          Length = 403

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
          Length = 402

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
          Length = 402

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
          Length = 376

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
          Length = 402

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|395513919|ref|XP_003761169.1| PREDICTED: LIM/homeobox protein Lhx5 [Sarcophilus harrisii]
          Length = 383

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 31/150 (20%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQDF 76
           +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+ +I+   +  C++D+
Sbjct: 72  FGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 131

Query: 77  -----EKEMYLMQQSSPSD--------DMMLDE---------------NCRPRDGRRGPK 108
                 KE  L   SS +D        D + D+               N    +   G K
Sbjct: 132 LNSPSVKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETTNNENEEQNSGTK 191

Query: 109 R--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
           R  PRT + + Q    K++F  +PKP R +
Sbjct: 192 RRGPRTTIKAKQLETLKAAFAATPKPTRHI 221


>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
           scrofa]
          Length = 402

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
          Length = 205

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 18/135 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P + V +AQ  V+HL CF C +C + L  G+ 
Sbjct: 72  SRDGALYCKEDFFRRFGTKCAGCRQGIPPSQAVRKAQERVFHLHCFACSLCGRQLATGDL 131

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQ 121
           F +L   +L C+ D+          +   D  +D            KRPRT +T+ Q   
Sbjct: 132 FYLLDDARLVCQHDYP--------GTAHRDSEVDG---------AAKRPRTTITAKQLET 174

Query: 122 FKSSFEVSPKPCRKV 136
            K++++ SPKP R V
Sbjct: 175 LKNAYKSSPKPARHV 189


>gi|380690603|gb|AFD93370.1| apterous, partial [Cydia pomonella]
          Length = 231

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 3  SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
          S + ++ C    +R++ VK CARCG  +  +E+VMRA+  VYHL CF C  C   L KG+
Sbjct: 21 SRDGNIYCKEDYYRMFCVKRCARCGAGITANELVMRARDAVYHLTCFSCAACGSLLSKGD 80

Query: 62 QFILRSGQLFCRQDFEKE 79
           F +R   ++CR  +E+E
Sbjct: 81 VFGMRDNLVYCRPHYEQE 98


>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
          Length = 402

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
           rubripes]
          Length = 359

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+ HVYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCNLGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMMLDEN-----CRPRDGRRG------------PKRPRTILTSA 117
           D    +      SP     L  N       P   R+               R RT+L   
Sbjct: 142 DHSILLEKSSAGSPISPGHLHSNRALHLTDPVSMRQATHRNHVHKQSEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYNANPRP 216


>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
           [Strongylocentrotus purpuratus]
          Length = 402

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 23/137 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ 
Sbjct: 106 LRLFGTKCAKCSQGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKA 165

Query: 75  DFEKEMYLMQQSSPSDDM--------MLDENCRPRDGR-----------RGPKRPRTILT 115
           D E    +M++    D +        +      P   R             P R RT+L 
Sbjct: 166 DHE----VMERPGDRDQVPNVNHRNYINATRAEPMPNRTSSGRSHVHKQEKPTRVRTVLN 221

Query: 116 SAQRRQFKSSFEVSPKP 132
             Q    ++ +  +P+P
Sbjct: 222 EKQLHTLRTCYAANPRP 238


>gi|432887976|ref|XP_004075005.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
          Length = 366

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F L   ++ CR  ++
Sbjct: 145 FGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 204

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQFKSSFEVSPKP-- 132
             +  +++++ S + +  E   P +    P   KR RT  T+ Q +  ++ F     P  
Sbjct: 205 TMVENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDA 264

Query: 133 --CRKVSTMN--SKRAKNILTPNQRRQFK 157
              +K++ M   S+R   +   N R + K
Sbjct: 265 QTLQKLADMTGLSRRVIQVWFQNCRARHK 293


>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
          Length = 404

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 251

Query: 122 FKSSF 126
            ++ F
Sbjct: 252 MQAQF 256


>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
          Length = 421

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 172 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 231

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 232 LVEEKVLCRIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 291

Query: 122 FKSSF 126
            ++ F
Sbjct: 292 MQAQF 296


>gi|281494552|gb|ADA72028.1| Isl1/2A [Lethenteron camtschaticum]
          Length = 138

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+CG      + VMR ++ V+HL CF CV C + L  G++F LR   LFCR D
Sbjct: 61  RLFGIKCAKCGVGFSKTDFVMRVRTQVFHLECFRCVACSRQLIPGDEFALREDGLFCRAD 120

Query: 76  FEKEMYLMQQSSPSDDM 92
            E    L++++  +D M
Sbjct: 121 HE----LLERAGTADGM 133


>gi|149551088|ref|XP_001517055.1| PREDICTED: LIM/homeobox protein Lhx5-like, partial [Ornithorhynchus
           anatinus]
          Length = 231

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 37/197 (18%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSG 68
           C  R  R +G KCA C   + P ++V +A++ V+HL CF C++C + L  GE+ +++   
Sbjct: 3   CAIRAPRRFGTKCAGCAQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYVIDEN 62

Query: 69  QLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE---------------NCRP 100
           +  C++D+      KE  L   SS +D        D + D+               N   
Sbjct: 63  KFVCKEDYLNSPSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDHSTSSDKEAANNEN 122

Query: 101 RDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQ 152
            +   G KR  PRT + + Q    K++F  +PKP R +       T  + R   +   N+
Sbjct: 123 EEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNR 182

Query: 153 RRQFKSSFEISSMPCRK 169
           R + +   ++S++  R+
Sbjct: 183 RSKERRMKQLSALGARR 199


>gi|432852914|ref|XP_004067448.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oryzias
           latipes]
          Length = 284

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 18/135 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F L+ G L CR D
Sbjct: 29  RLFGIKCAKCNLGFSSSDLVMRARDNVYHIECFRCSMCSRQLLPGDEFSLQEGDLLCRAD 88

Query: 76  FEKEMYLMQQSSPSDDMMLDEN------CRPRDGRRGP------------KRPRTILTSA 117
               +      SP     +  N        P   R+ P             R RT+L   
Sbjct: 89  HSMLLERTSAGSPISPGHIHSNRPLHMAADPVTVRQAPHRNHVHKQSEKTTRVRTVLNEK 148

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 149 QLHTLRTCYNANPRP 163


>gi|357622661|gb|EHJ74087.1| apterous [Danaus plexippus]
          Length = 359

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 38/202 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S + ++ C    +RL+ VK CARCG+ +  +E+VMRA+  V+HL CF CV C   L KG+
Sbjct: 60  SRDGNIYCKDDYYRLFCVKRCARCGNGITANELVMRARDMVFHLTCFTCVACGTLLSKGD 119

Query: 62  QFILRSGQLFCR--------QDFEKE----MYLMQQSSPSDD-------MMLDENCRPRD 102
            F +R+  ++CR         DF +E    +Y  Q+ +   D       + +++  RPR 
Sbjct: 120 VFGMRNSLVYCRPHYDSVCMDDFCEEDVNSVYRCQELNSEGDSPNQYFPVGVNQKGRPRK 179

Query: 103 GR--RGP---------KRPRTILTSAQRRQFKSSFE-------VSPKPCRKVSTMNSKRA 144
            +   GP         +   T L    R    SS E       V+        T  +KR 
Sbjct: 180 RKIAHGPHEDMQVQTMRMASTALDILHRADLSSSMESLAYDSSVASPGSVSSHTQRTKRM 239

Query: 145 KNILTPNQRRQFKSSFEISSMP 166
           +     +Q R  KS F I+  P
Sbjct: 240 RTSFKHHQLRTMKSYFAINQNP 261


>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
           niloticus]
          Length = 359

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR D
Sbjct: 83  RLFGIKCAKCNMGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDDELLCRAD 142

Query: 76  FEKEMYLMQQSSP-------------SDDMMLDENCRPRDGRRGP----KRPRTILTSAQ 118
               M      SP             SD + +      R+    P     R RT+L   Q
Sbjct: 143 HGLMMERASAGSPLSPGNIHNRPLHISDPVSVRHPPHHRNHVHKPSEKTTRVRTVLNEKQ 202

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 203 LHTLRTCYNANPRP 216


>gi|299115102|dbj|BAJ09782.1| apterous 1 [Daphnia magna]
          Length = 468

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S  S + C    +RL+GV+ C RC   L  +E+VMRA+  V+HL CF C  C QPL KG+
Sbjct: 49  SRQSRIYCRDDYYRLFGVRRCNRCCLPLGSNELVMRARDAVFHLACFTCAACNQPLTKGD 108

Query: 62  QFILRSGQLFCRQDFE 77
            F +R G ++CR  +E
Sbjct: 109 IFGMRDGIVYCRLHYE 124


>gi|47177844|emb|CAG14401.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 63

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%)

Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
          RLYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR D
Sbjct: 1  RLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRAD 60

Query: 76 FE 77
           +
Sbjct: 61 HD 62


>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
          Length = 338

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS  SH SC+ +          FR YG  CA CG  +   + V RA+ +VYHL CF C  
Sbjct: 87  TSLGSHTSCYIKEKEVFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFS 146

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR----RGPK 108
           C + L  GE+F L  G++ CR  ++  +  ++++    + +  E   P +      +  K
Sbjct: 147 CKRQLSTGEEFALVEGKVLCRVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSK 206

Query: 109 RPRTILTSAQRRQFKSSFEVSPKP 132
           R RT  T+ Q +  ++ F     P
Sbjct: 207 RARTSFTADQLQVMQAQFAQDNNP 230


>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
           niloticus]
          Length = 360

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 18/136 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCNLGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLREEELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMMLDEN------CRPRDGRRGP------------KRPRTILTS 116
           D    +      SP     +  N        P   R+ P             R RT+L  
Sbjct: 142 DHSLLLERSSAGSPVSPGHIHSNRPLHLAADPVTVRQAPHRNHVHKQSEKTTRVRTVLNE 201

Query: 117 AQRRQFKSSFEVSPKP 132
            Q    ++ +  +P+P
Sbjct: 202 KQLHTLRTCYNANPRP 217


>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
          Length = 294

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 92  NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 151

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           L   ++ CR  ++  +  +++++ + + +  E   P +    PK  +   TS    Q + 
Sbjct: 152 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 211

Query: 125 SFE 127
            F+
Sbjct: 212 WFQ 214


>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
           leucogenys]
          Length = 415

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 35/134 (26%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 114 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 173

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           F                                      D   G KRPRT +T+ Q    
Sbjct: 174 FYX-----------------------------------XDSEAGAKRPRTTITAKQLETL 198

Query: 123 KSSFEVSPKPCRKV 136
           K++++ SPKP R V
Sbjct: 199 KNAYKNSPKPARHV 212


>gi|345492348|ref|XP_001601137.2| PREDICTED: LIM/homeobox protein Awh-like [Nasonia vitripennis]
          Length = 300

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N+ + C       +G +CA+C   +   + V RA+  VYHL CF C  C + L  GEQF 
Sbjct: 135 NTQIYCRQDYVINFGARCAKCSRSIGSGDWVRRARDRVYHLACFACDACSRQLSTGEQFA 194

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           L   +L C+  +  +      +S S+D   + +C+        KR RT  T  Q    ++
Sbjct: 195 LIDAKLLCKAHY-LDAVEGNNTSSSEDCDSEHSCKGNK----TKRVRTTFTEEQLSVLQA 249

Query: 125 SFEVSPKP----CRKVS--TMNSKRAKNILTPNQR-RQFKSSFEISS 164
           +F++   P      +++  T  SKR   +   N R RQ K S +I +
Sbjct: 250 NFQLDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKKHSGKIKA 296



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 22  CARCGDRLLPHE-MVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           C  CG+ +  HE  V+      +H  C  C  C +PL       LR+ Q++CRQD+
Sbjct: 91  CGGCGENV--HERTVICVGGRTWHSKCLKCCACSKPLHDQHSCFLRNTQIYCRQDY 144


>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 16/134 (11%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 86  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 145

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCR----PRDGRRGPKRP------------RTILTSAQ 118
           D    +     +SPS    L         P  GR+   RP            RT+L   Q
Sbjct: 146 DHGLLLERAAATSPSSPGPLPARGLHLPDPGAGRQPAPRPHAHKQAEKTTRVRTVLNEKQ 205

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 206 LHTLRTCYAANPRP 219


>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
          Length = 402

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 37/204 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+  V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF-----EKEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAK 145
              N    +   G KR  PRT + + Q    K++F  +PKP R +       T  + R  
Sbjct: 165 EAANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVI 224

Query: 146 NILTPNQRRQFKSSFEISSMPCRK 169
            +   N+R + +   ++S++  R+
Sbjct: 225 QVWFQNRRSKERRMKQLSALGARR 248


>gi|50344739|ref|NP_001002043.1| islet1, like [Danio rerio]
 gi|37682137|gb|AAQ97995.1| ISL1 transcription factor, LIM/homeodomain [Danio rerio]
          Length = 323

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
           C     RL   KCA+C    +  E VMR+Q ++YH+ CF C  C +PL  G++++L+ GQ
Sbjct: 69  CREHYSRLSTSKCAKCDKAFISKEFVMRSQVNIYHVQCFRCEGCNRPLLSGDEYVLQDGQ 128

Query: 70  LFCRQDFEKEM--YLMQQSS---PSDDM--MLDENCRPRDGRRGPKRPRTILTSAQRRQF 122
           L C     K M   + QQ     PS+++   L  +   R   R   R RT+L+  Q    
Sbjct: 129 LLCTDHHNKLMSASINQQKEAGDPSEEIKSTLSWSSMQRRSERAT-RVRTVLSETQLCML 187

Query: 123 KSSFEVSPKP 132
           ++ +  +P+P
Sbjct: 188 QTCYTANPRP 197


>gi|37789883|gb|AAP04274.1| ScLim1 [Scyliorhinus canicula]
          Length = 237

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 37/191 (19%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQ 74
           R +G KCA C   + P ++V RA+S V+HL CF C+IC + L  GE+ +I+   +  C+ 
Sbjct: 1   RRFGTKCAGCYQGISPSDLVRRARSKVFHLNCFTCMICNKQLSTGEELYIIDENKFVCKD 60

Query: 75  DF------------------EKEMYLMQQSSPSDDMMLDENCRPRDGRR----------G 106
           DF                  ++ +    Q    DD    E+    D             G
Sbjct: 61  DFLNSNNSRENGALSVTACSDQSLSPDSQDHLQDDTKDSESANISDKETASNENEEQNLG 120

Query: 107 PKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKS 158
            KR  PRT + + Q    K++F  +PKP R +       T  + R   +   N+R + + 
Sbjct: 121 AKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 180

Query: 159 SFEISSMPCRK 169
             ++S++  R+
Sbjct: 181 MKQLSALGARR 191


>gi|321454678|gb|EFX65839.1| hypothetical protein DAPPUDRAFT_65174 [Daphnia pulex]
          Length = 291

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S  S + C    +RL+GV+ C RC   L  +E+VMRA+  V+HL CF C  C QPL KG+
Sbjct: 60  SRQSRIYCRDDYYRLFGVRRCNRCCLPLGSNELVMRARDAVFHLACFTCAACNQPLAKGD 119

Query: 62  QFILRSGQLFCRQDFE 77
            F +R G ++CR  +E
Sbjct: 120 IFGMRDGIVYCRLHYE 135


>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
          Length = 407

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 39/206 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQ-FKSSFEVSPKPCRKV------STMNSKR 143
                    D   G KR  PRT + + Q     K++F  +PKP R +       T  + R
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLLKAAFAATPKPTRHIREQLAQETGLNMR 223

Query: 144 AKNILTPNQRRQFKSSFEISSMPCRK 169
              +   N+R + +   ++S++  R+
Sbjct: 224 VIQVWFQNRRSKERRMKQLSALGARR 249


>gi|444725137|gb|ELW65716.1| Insulin enhancer protein ISL-1 [Tupaia chinensis]
          Length = 308

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           LYG+KCA+C      ++ VMRA+S VYH+ CF CV C + L  G++F LR   LFCR D 
Sbjct: 30  LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 89

Query: 77  E-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSAQR 119
           +  E   +    P   +     L     P   R+   RP            RT+L   Q 
Sbjct: 90  DVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQL 149

Query: 120 RQFKSSFEVSPKP 132
              ++ +  +P+P
Sbjct: 150 HTLRTCYAANPRP 162


>gi|156379960|ref|XP_001631723.1| predicted protein [Nematostella vectensis]
 gi|156218768|gb|EDO39660.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    +R YG KC+ C   + P++MV RA+  V+H+ CFVC  C + +  G++
Sbjct: 45  SREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDE 104

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMM---------LDENCRPRDGRRGPKR--P 110
            + +  G   CR D     Y     +  DD +         LDE+    D     KR  P
Sbjct: 105 LYYIGDGSFICRDD-----YYHSHPTNLDDAIDEPKDLSYGLDED---LDAALASKRRGP 156

Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV 136
           RT + + Q    KS+F  +PKP R +
Sbjct: 157 RTTIKAKQLEALKSTFAATPKPSRNI 182


>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
          Length = 338

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 72/174 (41%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS  SH SC+ +          FR YG  CA CG  +   + V RA+ +VYHL CF C  
Sbjct: 87  TSLGSHASCYIKEKEIFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFS 146

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L  G++ CR  +              D MLD   R  +   G      
Sbjct: 147 CKRQLSTGEEFALVEGKVLCRIHY--------------DCMLDNLKRAVEKGTGVNMEGA 192

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           + T  +  Q        PKP        SKRA+   T +Q +  ++ F   + P
Sbjct: 193 VPTEQEINQ--------PKP--------SKRARTSFTADQLQVMQAQFAQDNNP 230


>gi|170053181|ref|XP_001862556.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
 gi|167873811|gb|EDS37194.1| insulin protein enhancer protein isl [Culex quinquefasciatus]
          Length = 438

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA+S +YH+ CF C +C + LQ G++F LR  G L+C+
Sbjct: 82  VRLFGTKCDKCGNSFSKNDFVMRAKSKIYHIECFRCSLCMKHLQPGDEFALRDGGALYCK 141

Query: 74  QDFE 77
           +D +
Sbjct: 142 EDHD 145


>gi|270004905|gb|EFA01353.1| apterous [Tribolium castaneum]
          Length = 386

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 16  RLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           RL+G+K CARC   ++  E+VMRA+  V+H+ CF C +C  PL KG+ F +R G + CR 
Sbjct: 48  RLFGMKRCARCQATIISSELVMRARDLVFHVHCFSCAVCNSPLTKGDHFGMRDGAVLCRL 107

Query: 75  DFE 77
            FE
Sbjct: 108 HFE 110


>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
          Length = 404

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 32/166 (19%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRCFGTKCAGCRQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
                    D   G KR  P T + + Q    K++F  +PKP R +
Sbjct: 164 KEAGSNENDDQNLGAKRRGPGTTIKAKQLETLKAAFAATPKPTRHI 209


>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
           domestica]
          Length = 359

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N    C     RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F 
Sbjct: 72  NGKTYCKRDYIRLFGIKCAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFS 131

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRR----------- 105
           LR  +L CR D    +      SP        S  + L E   P  GR+           
Sbjct: 132 LRDHELLCRADHSLLLDRASGESPRSPGHLPSSRGLHLSE---PGSGRQPSLRAHVHKQA 188

Query: 106 -GPKRPRTILTSAQRRQFKSSFEVSPKP 132
               R RT+L   Q    ++ +  +P+P
Sbjct: 189 EKTTRVRTVLNEKQLHTLRTCYAANPRP 216


>gi|158299279|ref|XP_319393.4| AGAP010209-PA [Anopheles gambiae str. PEST]
 gi|157014289|gb|EAA13793.5| AGAP010209-PA [Anopheles gambiae str. PEST]
          Length = 451

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 45/161 (27%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG     ++ VMRA++ +YH+ CF C  C + L  G++F LR  G L+C+
Sbjct: 111 VRLFGTKCDKCGSSFSKNDFVMRAKTKIYHIECFRCSACARQLIPGDEFALRDGGSLYCK 170

Query: 74  QD---FEK--EMYLMQ-------------------QSSPSDDMMLDEN------------ 97
           +D    EK  +  L+Q                   QSSPS+  ++  N            
Sbjct: 171 EDHDHLEKSSQNGLVQGAGKQERRIQKNNKHTNKRQSSPSNANVVHVNQNSGSESGSHKS 230

Query: 98  ------CRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP 132
                   P DG+  P R RT+L   Q    ++ +  +P+P
Sbjct: 231 LRGKGPSGPSDGK--PTRVRTVLNEKQLHTLRTCYNANPRP 269


>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
          Length = 555

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S + ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG
Sbjct: 228 SRDGNIYCKKDYYRMFGSMKRCARCHAAILASELVMRARELVFHVRCFSCAACAVPLTKG 287

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 288 DHFGMRDGAVLCRLHYE 304


>gi|410927794|ref|XP_003977325.1| PREDICTED: LIM/homeobox protein Lhx6-like, partial [Takifugu
           rubripes]
          Length = 223

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F L   ++ CR  ++
Sbjct: 2   FGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 61

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQFKSSFEVSPKP-- 132
             +  +++++ S + +  E   P +    P   KR RT  T+ Q +  ++ F     P  
Sbjct: 62  TMVENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDA 121

Query: 133 --CRKVSTMN--SKRAKNILTPNQRRQFK 157
              +K++ M   S+R   +   N R + K
Sbjct: 122 QTLQKLADMTGLSRRVIQVWFQNCRARHK 150


>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
          Length = 560

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S + ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG
Sbjct: 230 SRDGNIYCKKDYYRMFGSMKRCARCHAAILASELVMRARDLVFHVRCFSCAACAVPLTKG 289

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 290 DHFGMRDGAVLCRLHYE 306


>gi|363740595|ref|XP_001235421.2| PREDICTED: LIM/homeobox protein Lhx6 [Gallus gallus]
          Length = 562

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 13  RGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC 72
           R  R +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F L   ++ C
Sbjct: 321 RSARRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 380

Query: 73  RQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQFKSSF 126
           R  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q +  ++ F
Sbjct: 381 RIHYDTMIENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQF 437


>gi|440808054|gb|AGC24170.1| islet, partial [Lymnaea stagnalis]
          Length = 189

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 15 FRLYGVKCARCGDRLLPHEMVMR-AQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
           RL+G KC+RCG      ++VMR  +  VYHL CF C++C +PL  G++F +R   LFCR
Sbjct: 1  VRLFGTKCSRCGLGFCREDVVMRPTKGTVYHLNCFRCIVCNKPLVTGDEFAIRDDGLFCR 60

Query: 74 QDFE 77
           D +
Sbjct: 61 ADHD 64


>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
          Length = 620

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S + ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG
Sbjct: 287 SRDGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARDLVFHVRCFSCAACAVPLTKG 346

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 347 DHFGMRDGAVLCRLHYE 363


>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
           gorilla]
          Length = 384

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 136 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 195

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 196 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 252


>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
          Length = 363

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 230


>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
           leucogenys]
          Length = 391

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 259


>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
           [Taeniopygia guttata]
          Length = 419

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 32/154 (20%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR +G KCA C   + P ++V RA+S V+HL CF C++C + L  GE+ +I+   +   +
Sbjct: 56  FRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVDK 115

Query: 74  QDF------EKEMYLMQQSSPSDDMMLDENCRPR-----------------------DGR 104
           +D+       KE  L   ++ SD  +  ++  P                        D  
Sbjct: 116 EDYLNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQN 175

Query: 105 RGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
            G KR  PRT + + Q    K++F  +PKP R +
Sbjct: 176 LGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHI 209


>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
          Length = 550

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S + ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG
Sbjct: 217 SRDGNIYCKKDYYRMFGSMKRCARCHAAILASELVMRARDLVFHVRCFSCAACAVPLTKG 276

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 277 DHFGMRDGAVLCRLHYE 293


>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
           gorilla]
          Length = 369

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 136 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 195

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 196 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 252


>gi|312371799|gb|EFR19895.1| hypothetical protein AND_21633 [Anopheles darlingi]
          Length = 284

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +G KCARC   +   + V RA+  ++HL CF C  C + L  GEQF L   ++ C+  
Sbjct: 45  RTFGTKCARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDDKVLCKTH 104

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRR---GPKRPRTILTSAQRRQFKSSFEVSPKP 132
           +  EM+    SS       D+ C   DG +     KR RT  T  Q +  +++F +   P
Sbjct: 105 Y-SEMFDCGTSS-------DDGCEA-DGYQKNSKTKRVRTTFTEEQLQILQANFNIDSNP 155

Query: 133 ----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSM 165
                 +++++   SKR   +   N R + K   +   M
Sbjct: 156 DGQDLERIASVTGLSKRVTQVWFQNSRARQKKHVQDGEM 194


>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
           leucogenys]
          Length = 365

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 191

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 192 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 248


>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
          Length = 358

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCANCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMMLDEN----CRPRDGRRGP------------KRPRTILTSAQ 118
           D    M      SP    ++         P   R+ P             R RT+L   Q
Sbjct: 142 DHGLLMEQASAGSPLSPGIIHSRSLHIADPVSVRQPPHRNHVHKQSEKTTRVRTVLNEKQ 201

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 202 LHTLRTCYNANPRP 215


>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
          Length = 480

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR YG KCA C   +LP ++V RA+S V+HL CF C++C + L  GE+ +++   Q  C+
Sbjct: 57  FRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICK 116

Query: 74  QDFEKEMYLMQQSSPSDD 91
           +D+  +  L +   P +D
Sbjct: 117 EDYLTKCQLRRPELPDND 134


>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
           purpuratus]
 gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
           purpuratus]
          Length = 480

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR YG KCA C   +LP ++V RA+S V+HL CF C++C + L  GE+ +++   Q  C+
Sbjct: 57  FRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICK 116

Query: 74  QDFEKEMYLMQQSSPSDD 91
           +D+  +  L +   P +D
Sbjct: 117 EDYLTKCQLRRPELPDND 134


>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
          Length = 480

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR YG KCA C   +LP ++V RA+S V+HL CF C++C + L  GE+ +++   Q  C+
Sbjct: 57  FRRYGTKCAGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICK 116

Query: 74  QDFEKEMYLMQQSSPSDD 91
           +D+  +  L +   P +D
Sbjct: 117 EDYLTKCQLRRPELPDND 134


>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
           leucogenys]
          Length = 376

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQ 118
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q
Sbjct: 203 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQ 259


>gi|350404759|ref|XP_003487211.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
          Length = 441

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 130 ARDGNIYCKEDYYRLFAVSRCSRCRAGIFATELVMRARDLVYHVACFTCASCGTPLNKGD 189

Query: 62  QFILRSGQLFCRQDFE 77
            F  R G ++CR  +E
Sbjct: 190 HFGQRDGLVYCRPHYE 205


>gi|258645165|ref|NP_001158279.1| tailup [Tribolium castaneum]
          Length = 431

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC RCG      + VMRA+S +YH+ CF C  C +PL  G++F LR  G L+C+
Sbjct: 105 VRLFGAKCDRCGSSFSKDDFVMRAKSKIYHIKCFKCCACSRPLVPGDEFALRDGGNLYCK 164

Query: 74  QDFE 77
           +D +
Sbjct: 165 EDHD 168


>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
          Length = 363

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
           C     RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +
Sbjct: 77  CKRDYVRLFGIKCAKCNLGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLRDEE 136

Query: 70  LFCRQDFEKEMYLMQQSSPSDDMMLDEN------CRPRDGR-----------RGPKRPRT 112
           L CR D    M      SP     +  N        P   R               R RT
Sbjct: 137 LLCRADHSLLMERTSAGSPISPGHIHSNRSLHLAAEPVTVRAPHRNHVHKQSEKTTRVRT 196

Query: 113 ILTSAQRRQFKSSFEVSPKP 132
           +L   Q    ++ +  +P+P
Sbjct: 197 VLNEKQLHTLRTCYNANPRP 216


>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
          Length = 644

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S   ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG
Sbjct: 281 SREGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARELVFHVRCFSCAACSVPLTKG 340

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 341 DHFGMREGAVLCRLHYE 357


>gi|308512521|ref|XP_003118443.1| CRE-LIM-4 protein [Caenorhabditis remanei]
 gi|308239089|gb|EFO83041.1| CRE-LIM-4 protein [Caenorhabditis remanei]
          Length = 355

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 6   SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           +HV+      R +G KCA C   +   + V RA+++VYHL CF C  C + L  GE++ L
Sbjct: 152 THVTTTASSCREFGPKCASCERLIQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYAL 211

Query: 66  RSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSS 125
           + G L C+Q F +              +++ +      +   KR RT     Q    ++ 
Sbjct: 212 QEGNLLCKQHFLE--------------LVEGDSGVSSQKAKTKRVRTTFADDQLSVLQTY 257

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           F     P      K++TM   SKR   +   N R + K
Sbjct: 258 FNRDSNPDGADLEKIATMTGLSKRVTQVWFQNSRARQK 295


>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
          Length = 390

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + + ++ C    +RL+  +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+ 
Sbjct: 80  ARDGNIYCKEDYYRLFAGRCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGDH 139

Query: 63  FILRSGQLFCRQDFE 77
           F  R G ++CR  +E
Sbjct: 140 FGQRDGLVYCRPHYE 154


>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
           [Metaseiulus occidentalis]
          Length = 707

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           +++V C     R +GV+C++C   +   + V RA+  VYHL CF C  C + L  GE+F 
Sbjct: 499 DNNVYCKQDYARQFGVRCSKCTRGIQSSDWVRRARDQVYHLACFACEECKRQLSTGEEFA 558

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           L  G++ C+  F +   L+   S S D   D++  P   R   KR RT  T  Q +  ++
Sbjct: 559 LHDGRVLCKIHFCE---LIDPGSQSTDDNADQDHNP---RAKTKRVRTTFTEEQLQVLQA 612

Query: 125 SFEVSPKP----CRKVSTMN--SKRAKNILTPNQR 153
           +F +   P      +++ +   SKR   +   N R
Sbjct: 613 NFNLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 647


>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
 gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
          Length = 361

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +R++ V +C RC   +  +E+VMRA+  VYHL CF C  C  PL KG+
Sbjct: 72  ARDGNIYCKEDYYRMFAVTRCGRCQAGISANELVMRARDSVYHLHCFSCTSCGMPLSKGD 131

Query: 62  QFILRSGQLFCRQDFE 77
            F +R G ++CR  +E
Sbjct: 132 HFGMRDGLIYCRPHYE 147



 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          L G  CA CG R+     ++ A    +H  C  C  C  PL        R G ++C++D+
Sbjct: 25 LDGTTCAGCGGRIQDRYYLL-AVDRQWHASCLKCCECKLPLDTELTCFARDGNIYCKEDY 83

Query: 77 EK 78
           +
Sbjct: 84 YR 85


>gi|270011029|gb|EFA07477.1| tailup [Tribolium castaneum]
          Length = 411

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC RCG      + VMRA+S +YH+ CF C  C +PL  G++F LR  G L+C+
Sbjct: 81  VRLFGAKCDRCGSSFSKDDFVMRAKSKIYHIKCFKCCACSRPLVPGDEFALRDGGNLYCK 140

Query: 74  QDFE 77
           +D +
Sbjct: 141 EDHD 144


>gi|340721020|ref|XP_003398925.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus terrestris]
          Length = 391

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 80  ARDGNIYCKEDYYRLFAVSRCSRCRAGIFATELVMRARDLVYHVACFTCASCGTPLNKGD 139

Query: 62  QFILRSGQLFCRQDFE 77
            F  R G ++CR  +E
Sbjct: 140 HFGQRDGLVYCRPHYE 155


>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
          Length = 432

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KCARC      ++ VMRA++ +YH+ CF C+ C + L  G++F LR   LFC+ 
Sbjct: 72  VRLFGTKCARCSQSFSKNDFVMRAKNKIYHIDCFRCIACSRQLIPGDEFALRDDGLFCKA 131

Query: 75  DFE 77
           D +
Sbjct: 132 DHD 134


>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
          Length = 369

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSP 88
           F ++   +L C+ D+E      Q  SP
Sbjct: 134 FYLMEDSRLVCKADYETAKQRGQWGSP 160


>gi|431900754|gb|ELK08195.1| LIM/homeobox protein Lhx6 [Pteropus alecto]
          Length = 272

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F L   ++ CR  ++
Sbjct: 19  FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 78

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQFKSSF 126
             +  +++++ + + +  E   P +    P   KR RT  T+ Q +  ++ F
Sbjct: 79  TMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQF 130


>gi|70570020|dbj|BAE06522.1| transcription factor protein [Ciona intestinalis]
          Length = 402

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 14/97 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +CG     ++ VMRA+  +YH+ CF CV C + L  G++F LR   LFC+ D
Sbjct: 96  RLFGTKCNKCGLCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKAD 155

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
            E         + S DMM+       DG   P  P+T
Sbjct: 156 HE--------VATSGDMMV------HDGHMIPGIPQT 178


>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
          Length = 502

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 207 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 266

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR-------RGPKRPRTIL 114
            F ++   ++CR  FE    L+Q   P+        CR R GR       RG     T+L
Sbjct: 267 HFGMKDSLVYCRLHFEA---LLQGEYPAH--FNHALCR-RGGRGSARALARGRIWQPTML 320

Query: 115 TSAQRRQFKSSFEVSPKPCRKV-----------------STMNSKRAKNILTPNQRRQFK 157
             A+   F  SF + P+ C  +                 S+  +KR +     +Q R  K
Sbjct: 321 --ARSLAFSGSFLLVPRACWALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMK 378

Query: 158 SSFEISSMP 166
           S F I+  P
Sbjct: 379 SYFAINHNP 387


>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
          Length = 390

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + + ++ C    +RL+  +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+ 
Sbjct: 80  ARDGNIYCKEDYYRLFAGRCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGDY 139

Query: 63  FILRSGQLFCRQDFE 77
           F  R G ++CR  +E
Sbjct: 140 FGQRDGLVYCRPHYE 154


>gi|321455236|gb|EFX66374.1| hypothetical protein DAPPUDRAFT_11288 [Daphnia pulex]
          Length = 349

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR YG KC  CG  L P ++V +A+  VYHL CF C +C + L  GE+
Sbjct: 41  SRDGKLYCRTDFFRRYGTKCGGCGQGLSPTDLVRKARDKVYHLRCFTCALCRRQLSTGEE 100

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C++DF
Sbjct: 101 LYLLDDARFLCKEDF 115


>gi|1708562|sp|P53410.1|ISL2_CHICK RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
 gi|531181|gb|AAA62172.1| sequence encoding 37 predicted 5' amino acids has not been
           determined, partial [Gallus gallus]
          Length = 319

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+ HVYHL CF C  C + L  G+QF LR   L CR D
Sbjct: 46  RLFGIKCAQCRAAFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRAD 105


>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
           [Ailuropoda melanoleuca]
          Length = 365

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFEKEMYLMQQSSP 88
           F ++   +L C+ D+E      Q  SP
Sbjct: 134 FYLMEDSRLVCKADYETAKQRGQWGSP 160


>gi|307166312|gb|EFN60494.1| LIM/homeobox protein Lhx9 [Camponotus floridanus]
          Length = 487

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 179 ARDGNIYCKEDYYRLFAVSRCSRCRAGISASELVMRARDLVYHVACFTCASCGTPLNKGD 238

Query: 62  QFILRSGQLFCRQDFE 77
            F  R+G ++CR  +E
Sbjct: 239 HFGQRNGLVYCRPHYE 254


>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
 gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
          Length = 433

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +CG     ++ VMRA++ +YH+ CF C  C + L  G++F LR   LFC++D
Sbjct: 67  RLFGTKCDKCGQSFSKNDFVMRAKTKIYHVDCFRCTACERQLVPGDEFALREDGLFCKED 126

Query: 76  FE 77
            E
Sbjct: 127 HE 128


>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
 gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
 gi|1094403|prf||2106150A LIM domain homeobox protein
          Length = 340

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 64  VRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRQLVPGDEFSLRDEELLCRA 123

Query: 75  DFEKEMYLMQQSSP-SDDMMLDEN---CRPRDGRRGP------------KRPRTILTSAQ 118
           D    +      SP S   +L  +     P   R+ P             R RT+L   Q
Sbjct: 124 DHGLLLERASAGSPISPGNILSRSFHIADPVSVRQPPHRNHVHKQSEKTTRVRTVLNEKQ 183

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 184 LHTLRTCYNANPRP 197


>gi|443703132|gb|ELU00843.1| hypothetical protein CAPTEDRAFT_221751 [Capitella teleta]
          Length = 241

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 17/144 (11%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +GVKCA+C   +   + V RA+ +VYHL CF C  C + L  GE+F L+  ++ C+  
Sbjct: 43  REFGVKCAKCCRNIQATDWVRRARENVYHLACFACDACKRQLSTGEEFALQENRVLCKTH 102

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
           + + +    +  P      DEN    + ++  KR RT  T  Q +  +++F++   P   
Sbjct: 103 YVEAI----EGGPGS----DEN---SNQKQKTKRVRTTFTEEQLQVLQANFQLDSNPDGQ 151

Query: 133 -CRKVSTMN--SKRAKNILTPNQR 153
              +++ +   SKR   +   N R
Sbjct: 152 DLERIAQITGLSKRVTQVWFQNSR 175


>gi|74096249|ref|NP_001027767.1| LIM homeodomain protein [Ciona intestinalis]
 gi|3150146|emb|CAA06919.1| LIM homeodomain protein [Ciona intestinalis]
          Length = 381

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 14/97 (14%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +CG     ++ VMRA+  +YH+ CF CV C + L  G++F LR   LFC+ D
Sbjct: 75  RLFGTKCNKCGLCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKAD 134

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
            E         + S DMM+       DG   P  P+T
Sbjct: 135 HE--------VATSGDMMV------HDGHMIPGIPQT 157


>gi|306020805|gb|ADM79456.1| islet [Cupiennius salei]
          Length = 249

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 32/150 (21%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           FRL+G+KCARC   L   + VMRA+S +YH+ CF C+ C + L  G++F L+   L C+ 
Sbjct: 12  FRLFGIKCARCNVSLSKSDFVMRARSQIYHIDCFRCIACARQLLPGDEFALKEDGLCCKS 71

Query: 75  DF-------------------------EKEMYLMQQSSPSDDMMLDEN---CRPRDGRRG 106
           +                             + +    + ++ M    N    RP+  ++G
Sbjct: 72  EHCTLAITDKKPNGHPTPNGHNGTTTNGTTLQMAGNPANAESMQTGRNRDSVRPQVHKQG 131

Query: 107 ----PKRPRTILTSAQRRQFKSSFEVSPKP 132
               P R RT+L   Q    ++ +  +P+P
Sbjct: 132 SDHKPTRVRTVLNEKQLHTLRTCYAANPRP 161


>gi|148679946|gb|EDL11893.1| LIM homeobox protein 8, isoform CRA_a [Mus musculus]
          Length = 291

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 57  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 116

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 117 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 162

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 163 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 200


>gi|324509239|gb|ADY43889.1| Insulin enhancer protein isl-2b [Ascaris suum]
          Length = 427

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N    C     RL+  KC+RC       ++VMRA+  VYH+ CF C+ C + L  GE+FI
Sbjct: 83  NGKTYCKDDYVRLFATKCSRCDGTFGRTDLVMRARHLVYHVNCFTCLSCEKRLVPGEEFI 142

Query: 65  LRSGQLFCRQDFE 77
           ++  +L+CR D E
Sbjct: 143 IKDDELYCRADCE 155


>gi|324508533|gb|ADY43602.1| Insulin gene enhancer protein isl-2b [Ascaris suum]
          Length = 452

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N    C     RL+  KC+RC       ++VMRA+  VYH+ CF C+ C + L  GE+FI
Sbjct: 83  NGKTYCKDDYVRLFATKCSRCDGTFGRTDLVMRARHLVYHVNCFTCLSCEKRLVPGEEFI 142

Query: 65  LRSGQLFCRQDFE 77
           ++  +L+CR D E
Sbjct: 143 IKDDELYCRADCE 155


>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
          Length = 610

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 32/167 (19%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQ 74
           R +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+ +++   +  C+ 
Sbjct: 168 RRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKD 227

Query: 75  DFE-----KEMYLMQQSSPSD--------DMMLDE---------------NCRPRDGRRG 106
           D+      KE  L   SS +D        D + D+               N    +   G
Sbjct: 228 DYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSG 287

Query: 107 PKR--PRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPN 151
            KR  PRT + + Q    K++F  +PKP R +    ++  K  LTP+
Sbjct: 288 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRAQLAQ-XKAPLTPS 333



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQS 86
            +++   +  C+ D+     L + S
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGS 129


>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
          Length = 359

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPD---PGAGRQASLRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
 gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
           AltName: Full=Insulin gene enhancer protein isl-2;
           Short=Islet-2
 gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
 gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
 gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
 gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
          Length = 359

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGP------------KRPRTIL 114
           D    M      SP        S  + + E   P   R+ P             R RT+L
Sbjct: 142 DHGLLMERASAGSPISPGNIHSSRPLHIPE---PVPVRQPPHRNHVHKQSEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYNANPRP 216


>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
 gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
          Length = 336

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
           boliviensis boliviensis]
          Length = 360

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 18/136 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSPSD------DMMLDENCRPRDGRRGPKRP------------RTILTS 116
           D    +      SP           L     P  GR+   RP            RT+L  
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPADPGSGRQPALRPHVHKQTEKTTRVRTVLNE 201

Query: 117 AQRRQFKSSFEVSPKP 132
            Q    ++ +  +P+P
Sbjct: 202 KQLHTLRTCYAANPRP 217


>gi|402874959|ref|XP_003901290.1| PREDICTED: insulin gene enhancer protein ISL-2 [Papio anubis]
          Length = 350

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 17/141 (12%)

Query: 9   SCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSG 68
           +  P   RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  
Sbjct: 67  TAAPWARRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREH 126

Query: 69  QLFCRQDFEKEMYLMQQSSP--------SDDMMLDE-------NCRPRDGRRGPK--RPR 111
           +L CR D    +      SP        S  + L +         RP   ++  K  R R
Sbjct: 127 ELLCRADHGLLLERAAAGSPRSPGPLPGSRGLHLPDAGSGRQPALRPHVHKQTEKTTRVR 186

Query: 112 TILTSAQRRQFKSSFEVSPKP 132
           T+L   Q    ++ +  +P+P
Sbjct: 187 TVLNEKQLHTLRTCYAANPRP 207


>gi|196000228|ref|XP_002109982.1| hypothetical protein TRIADDRAFT_14836 [Trichoplax adhaerens]
 gi|190588106|gb|EDV28148.1| hypothetical protein TRIADDRAFT_14836, partial [Trichoplax
           adhaerens]
          Length = 215

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 8   VSCHPRGFRLYG-VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    F  +G +KC  C   + P E VM+A+ + YH  CF+C  C + L+ GE+F +R
Sbjct: 50  IFCRTDYFNRFGSIKCPTCNSGISPKEHVMKAREYAYHCSCFICHTCNRLLKTGEEFAMR 109

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN--------CRPRDGRRGPKRPRTILTSAQ 118
             +L+C++ F+      + S  S+     EN             GR   KR RT     Q
Sbjct: 110 GCKLYCKEHFQSITSDHRHSHHSNKDNSGENHDSSNSNDITDEHGR--SKRIRTSFKQPQ 167

Query: 119 RRQFKSSFEVSPKPCRK------VSTMNSKRAKNILTPNQRRQFKSSF 160
            R  K+ F ++  P  K      + T  +KR   +   N R +++ S 
Sbjct: 168 LRTMKTYFALNHNPDSKDLKQLSIKTGLNKRVLQVWFQNARAKYRRSI 215



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 22 CARCGDRLLPHEMV-MRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
          CA CG  ++  E + ++     +H+ C  C  C +PL K +   ++ G +FCR D+
Sbjct: 1  CAGCGRSIMDQEYLGIQKTDKKWHIQCLRCYDCNEPLDKDQSCYVKQGNIFCRTDY 56


>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
          Length = 324

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS  SH SC+ +          FR YG  CA CG  +   + V RA+ +VYHL CF C  
Sbjct: 87  TSLGSHTSCYIKEKEVFCKMDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFS 146

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR----RGPK 108
           C + L  GE+F L   ++ CR  ++  +  ++++    + +  E   P +      +  K
Sbjct: 147 CKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSK 206

Query: 109 RPRTILTSAQRRQFKSSFEVSPKP 132
           R RT  T+ Q +  ++ F     P
Sbjct: 207 RARTSFTADQLQVMQAQFAQDNNP 230


>gi|487805|gb|AAA80274.1| LIM domain homeobox protein, partial [Danio rerio]
          Length = 167

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+ +VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 12  VRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRA 71

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGP------------KRPRTIL 114
           D    M      SP        S  + + E   P   R+ P             R RT+L
Sbjct: 72  DHGLLMERASAGSPISPGNIHSSRPLHIPE---PVPVRQPPHRNHVHKQSEKTTRVRTVL 128

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 129 NEKQLHTLRTCYNANPRP 146


>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
          Length = 349

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S + ++ C    +RL+ VK C RC + +  +E+VMRA+  VYHL CF CV C   L KG+
Sbjct: 60  SRDGNIYCKEDYYRLFCVKRCGRCCNGITANELVMRARDLVYHLNCFTCVACGTQLSKGD 119

Query: 62  QFILRSGQLFCRQDFE 77
            F ++ G ++CR  ++
Sbjct: 120 VFGMKGGLVYCRPHYD 135


>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
          Length = 384

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 26/158 (16%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C P   R +G KC+ C   + P + V RA+S VYHL CF C  C + L  GE+F L+ 
Sbjct: 166 IYCKPCYNRQFGTKCSSCRRLIQPTDWVRRARSFVYHLACFACDQCKRQLSTGEEFALQD 225

Query: 68  GQLFCRQDFEK--EMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSS 125
            +L C+Q + +  E    QQ + +                  KR RT     Q    ++ 
Sbjct: 226 CRLLCKQHYVELVEGETGQQKAKT------------------KRVRTTFAEEQLAVLQTH 267

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           F++   P      +++TM   SKR   +   N R + K
Sbjct: 268 FQIDSNPDGADLERIATMTGLSKRVTQVWFQNSRARQK 305


>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
          Length = 426

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 187 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 246

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 247 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 292

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 293 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 330


>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
          Length = 367

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 128 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 187

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 188 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 233

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 234 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 271


>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
          Length = 356

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S + ++ C    +RL+ +K CARC   +   ++VMRA+  VYH+ CF C  C   L KG+
Sbjct: 65  SRHGNIYCKQDYYRLFSIKRCARCQGGIGACDLVMRAKDLVYHVECFACYACGAVLCKGD 124

Query: 62  QFILRSGQLFCRQDFEK 78
            + +R G +FCR D+E+
Sbjct: 125 YYGVRDGAVFCRPDYER 141


>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
 gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
           8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
           Lhx7; Short=LIM homeobox protein 7
 gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
 gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
 gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
 gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
 gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
 gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
 gi|1587483|prf||2206477A LIM homeo domain transcription factor
          Length = 367

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 128 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 187

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 188 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 233

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 234 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 271


>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
          Length = 365

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 127 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 186

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 187 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 232

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 233 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 270


>gi|387538435|gb|AFJ79494.1| LIM-homeodomain transcription factor islet, partial [Branchiostoma
           lanceolatum]
          Length = 162

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KCA+C      ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ D
Sbjct: 42  RLFGTKCAKCSLGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKAD 101

Query: 76  FE 77
            E
Sbjct: 102 HE 103


>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
          Length = 359

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAADSPRSPGPLPGARGLHLSD---PGSGRQPTLRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
          Length = 466

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C     RLYG K CARC   +   E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 174 ARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGD 233

Query: 62  QFILRSGQLFCRQDFE 77
            + +R   ++CR  +E
Sbjct: 234 TYGIRDAAVYCRLHYE 249


>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
 gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
          Length = 271

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
           C     + +   CA+C   +   + V RA+ +V+HL CF C  C + L  GEQF +   +
Sbjct: 57  CKSDYIKKFKTSCAKCARSISATDWVRRAREYVFHLACFACDSCGRQLSTGEQFAICEDR 116

Query: 70  LFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVS 129
           + C+  +   M L+   + S +  LD +    +G+   KR RT  T  Q +  +++F+V 
Sbjct: 117 VLCKTHY---MELIDDGTTSSEDGLDAD---GNGKNKTKRIRTTFTEEQIQILQANFQVD 170

Query: 130 PKPCRK------VSTMNSKRAKNILTPNQRRQFKSSFEI 162
             P  +      ++T  SKR   +   N R + K    +
Sbjct: 171 SNPDGQDLERIALATGLSKRVTQVWFQNSRARQKKHVHV 209


>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
          Length = 391

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 80  ARDGNIYCKEDYYRLFAVSRCSRCRAGISASELVMRARDLVYHVACFTCASCGTPLNKGD 139

Query: 62  QFILRSGQLFCRQDFE 77
            F  R G ++CR  +E
Sbjct: 140 HFGQRDGLVYCRPHYE 155


>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
          Length = 471

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KCA C   + P+++V RA++ V+HL CF C+IC + L  GE+
Sbjct: 44  SRDGKLFCRNDFFRRFGTKCAGCTQGISPNDLVRRARNKVFHLKCFTCIICRKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF 76
            +++   +  C++D+
Sbjct: 104 LYVMDENRFICKEDY 118


>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
           boliviensis boliviensis]
          Length = 359

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPD---PGSGRQPALRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
          Length = 359

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMML---------------DENCRPRDGRRGPK--RPRTILTSA 117
           D    +      SP     L                 + RP   ++  K  R RT+L   
Sbjct: 142 DHGLLLERAAAGSPRSPGQLPGARGLHLPDPGSARQPSLRPHVHKQTEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYAANPRP 216


>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
 gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
 gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
          Length = 332

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H+SC+ +          FR YG +CA CG  +  ++ V RA+ + YHL CF C  
Sbjct: 83  TSLGRHISCYIKEKEIFCKLDYFRKYGTRCAHCGRNIHSNDWVRRAKGNTYHLACFACFS 142

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR----RGPK 108
           C + L  GE+F L   ++ CR  ++  +  ++++  +   +  E   P +      +  K
Sbjct: 143 CKRQLSTGEEFALVDERVLCRVHYDCMLDNLKRAMENGKGVNVEGAVPSEQEVNQPKPAK 202

Query: 109 RPRTILTSAQRRQFKSSFEVSPKP 132
           R RT  T+ Q +  ++ F     P
Sbjct: 203 RARTSFTADQLQVMQAQFAQDNNP 226


>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
           anatinus]
          Length = 347

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 98  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 157

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 158 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 203

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 204 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 241


>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
          Length = 346

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
          Length = 359

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPD---PGSGRQPSLRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 272

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS +SH SC+ +          FR YG  CA CG  +   + V RA+ +VYHL CF C  
Sbjct: 44  TSLSSHTSCYIKEKEVFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFS 103

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR----RGPK 108
           C + L  GE+F L   ++ CR  ++  +  ++++    + +  E   P +      +  K
Sbjct: 104 CKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSK 163

Query: 109 RPRTILTSAQRRQFKSSFEVSPKP 132
           R RT  T+ Q +  ++ F     P
Sbjct: 164 RARTSFTADQLQVMQAQFAQDNNP 187


>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
          Length = 367

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 128 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSIDWVRRAKGNVYHLACFACFS 187

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  F              D MLD   R  +   G      
Sbjct: 188 CKRQLSTGEEFALVEEKVLCRVHF--------------DCMLDNLKREVENGNGISVEGA 233

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 234 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 271


>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
 gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
          Length = 347

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 98  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 157

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 158 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGVSMEGA 203

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +   + F   + P
Sbjct: 204 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMXAQFAQDNNP 241


>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
          Length = 406

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 88  ARDGNIYCKEDYYRLFAVSRCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGD 147

Query: 62  QFILRSGQLFCRQDFE 77
            F  R G ++CR  +E
Sbjct: 148 HFGQRDGLVYCRPHYE 163


>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
          Length = 398

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C     RLYG K CARC   +   E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 106 ARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGD 165

Query: 62  QFILRSGQLFCRQDFE 77
            + +R   ++CR  +E
Sbjct: 166 TYGIRDAAVYCRLHYE 181


>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
 gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
          Length = 359

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPD---PGSGRQPSLRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
           [Ovis aries]
          Length = 366

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENCRPRDGRRGPKRP------------RTIL 114
           D    +      SP        +  + L +   P  GR+   RP            RT+L
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPD---PGSGRQPSLRPHVHKQTEKTTRVRTVL 198

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 199 NEKQLHTLRTCYAANPRP 216


>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
          Length = 443

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 204 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 263

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 264 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 309

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 310 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 347


>gi|426238599|ref|XP_004013238.1| PREDICTED: LIM/homeobox protein Lhx1 [Ovis aries]
          Length = 388

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 38/205 (18%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G+  + C   + P ++V RA+S V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCKNDFFRRFGLCVSGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF------EKEMYLMQQSSPSDDMMLDENCRPR-------------- 101
            +I+   +  C++D+       KE  L   ++ SD  +  ++  P               
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSD 163

Query: 102 ---------DGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRA 144
                    D   G KR  PRT + + Q    K++F  +PKP R +       T  + R 
Sbjct: 164 KEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 223

Query: 145 KNILTPNQRRQFKSSFEISSMPCRK 169
             +   N+R + +   ++S++  R+
Sbjct: 224 IQVWFQNRRSKERRMKQLSALGARR 248


>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
           leucogenys]
          Length = 356

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 107 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 166

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 167 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 212

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 213 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 250


>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
           anatinus]
          Length = 347

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 98  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 157

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 158 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 203

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 204 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 241


>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
           [Branchiostoma floridae]
 gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
           [Branchiostoma floridae]
          Length = 452

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + VK CARC   +   EMVMRA+  V+HL CF+C  C +PL  G+Q+ +R
Sbjct: 107 IYCKQDYYRRFSVKRCARCHLGISASEMVMRARDLVFHLNCFMCETCNRPLTTGDQYGMR 166

Query: 67  SGQLFCRQDFE 77
              ++CR D+E
Sbjct: 167 GDTVYCRYDYE 177


>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
          Length = 346

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
          Length = 347

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 98  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 157

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 158 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 203

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 204 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 241


>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
          Length = 375

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 126 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 185

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 186 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 231

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 232 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 269


>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
 gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
          Length = 356

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 107 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 166

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 167 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 212

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 213 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 250


>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
 gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
 gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
 gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
           gorilla]
 gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
           leucogenys]
          Length = 346

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
          Length = 379

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 130 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 189

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 190 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 235

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 236 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 273


>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
          Length = 348

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 99  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 158

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 159 CKRQLSTGEEFALVEEKVLCRVHY--------------DFMLDNLKREVENGNGISVEGA 204

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 205 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 242


>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
 gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
          Length = 356

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 107 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 166

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 167 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 212

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 213 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 250


>gi|449472133|ref|XP_002192003.2| PREDICTED: insulin gene enhancer protein ISL-2 [Taeniopygia
           guttata]
          Length = 271

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+ HVYHL CF C  C + L  G+QF LR   L CR D
Sbjct: 129 RLFGIKCAQCRAAFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRAD 188


>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
          Length = 346

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|157137279|ref|XP_001663969.1| arrowhead [Aedes aegypti]
 gi|108869747|gb|EAT33972.1| AAEL013765-PA [Aedes aegypti]
          Length = 201

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            + +G KC++C   + P + V +A+  V+HL CF C  C + L  GEQF L   ++ C+ 
Sbjct: 6   LQTFGAKCSKCSRTIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCK- 64

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKSSFEVSPKP 132
                ++ M  +  S+    D+ C   DG  +   KR RT  T  Q    +++F++   P
Sbjct: 65  -----IHYMDNADDSNSS--DDGCST-DGFNKNKSKRVRTTFTEEQLHILQANFQIDSNP 116

Query: 133 ----CRKVSTMN--SKRAKNILTPNQRRQFK 157
                 +++ +   SKR   +   N R + K
Sbjct: 117 DGQDLERIAQLTGLSKRVTQVWFQNSRARQK 147


>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
 gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
          Length = 346

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
           boliviensis]
          Length = 346

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
          Length = 444

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C     RLYG K CARC   +   E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 174 ARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGD 233

Query: 62  QFILRSGQLFCRQDFE 77
            + +R   ++CR  +E
Sbjct: 234 TYGIRDAAVYCRLHYE 249


>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
           [Branchiostoma floridae]
 gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
           [Branchiostoma floridae]
          Length = 330

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +C RC   +   EMVMRA+  VYHL CF CV C + L  G+
Sbjct: 57  SKDGRIYCREDYYRRFAVQRCGRCHLGITAREMVMRARDSVYHLACFTCVTCDKALTTGD 116

Query: 62  QFILRSGQLFCRQDFEKEM 80
           +F ++   ++CR  +E  M
Sbjct: 117 EFGMQGSAIYCRYHYETFM 135


>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
 gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
 gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
 gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
 gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
           gorilla]
 gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
           8
          Length = 356

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 107 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 166

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 167 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 212

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 213 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 250


>gi|23893429|emb|CAD12364.1| apterous-2 [Cupiennius salei]
          Length = 217

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 16 RLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
          RL+ VK CARC   +  +E+VMRA+  VYHL CF C  C   L +G+ F LR   ++CR 
Sbjct: 1  RLFAVKRCARCQRGIFANELVMRARDLVYHLHCFTCAWCNTALTQGDYFGLRDNLVYCRA 60

Query: 75 DFEKEMY 81
           +E  M+
Sbjct: 61 HYELMMH 67


>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
          Length = 306

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 128 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 187

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 188 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 233

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 234 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 271


>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
          Length = 346

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 235

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+ HVYH+ CF C +C + L  G++F LR  +L CR D
Sbjct: 83  RLFGIKCAKCNLGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRAD 142


>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
          Length = 359

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFGSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMML---------------DENCRPRDGRRGPK--RPRTILTSA 117
           D    +      SP     L                   RP   ++  K  R RT+L   
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPDPGPGRQPTLRPHVHKQAEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYAANPRP 216


>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
          Length = 371

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 128 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 187

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 188 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 233

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 234 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 271


>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
           latipes]
          Length = 358

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 16/133 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR +
Sbjct: 83  RLFGIKCAKCNTGFCSSDLVMRAREKVYHMECFRCSVCSRHLLPGDEFSLREDELLCRAN 142

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRD--GRRGP--------------KRPRTILTSAQR 119
            +        S  S D +        D    R P               R RT+L   Q 
Sbjct: 143 HDLLERASAGSPLSPDNLHKRTLHISDPISVRHPSHHRNHVHKQSEKTTRVRTVLNEKQL 202

Query: 120 RQFKSSFEVSPKP 132
              ++ +  +P+P
Sbjct: 203 HTLRTCYNANPRP 215


>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
          Length = 320

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 71  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 130

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 131 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 176

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 177 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 214


>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
          Length = 361

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 19/137 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+GVKCA+CG      ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  IRLFGVKCAQCGLGFSSSDLVMRARERVYHMECFRCSLCNRQLLPGDEFCLREHELLCRA 141

Query: 75  D---FEKEM----------YLMQQSSP---SDDMMLDEN-CRPRDGRRGPK--RPRTILT 115
           +    ++E             +Q   P   +D +   +   RP   ++  K  R RT+L 
Sbjct: 142 EHSHLDREAAGSPPSPTSPGPLQGGRPLHLADSVSGRQTSLRPHAHKQAEKTTRVRTVLN 201

Query: 116 SAQRRQFKSSFEVSPKP 132
             Q    ++ +  +P+P
Sbjct: 202 EKQLHTLRTCYAANPRP 218


>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
          Length = 351

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 102 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 161

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 162 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 207

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 208 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 245


>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
 gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
          Length = 295

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 46  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 105

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 106 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 151

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 152 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 189


>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
 gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
          Length = 902

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 10  CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
           C+ R F    VKC RC   +  +  V RA+ +VYHL CF C  C + L  GE+F L+  +
Sbjct: 675 CYQRQF---SVKCDRCNQVIQSNHWVRRARQYVYHLACFACDSCQRQLSTGEEFALQDSR 731

Query: 70  LFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVS 129
           + C+Q + +              +L+ +      ++  KR RT  T  Q +  +++F++ 
Sbjct: 732 VLCKQHYME--------------LLEGDNGKVHHKQKTKRVRTTFTEEQLQILQANFQID 777

Query: 130 PKP----CRKVS--TMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLGMSL 183
             P      +++  T  SKR   +   N R + K         C+ V V  +      S 
Sbjct: 778 SNPDGQDLERIAQGTGLSKRVTQVWFQNSRARQK--------KCQGVKVKSNSSHPNQSS 829

Query: 184 QDSSD 188
           QDS D
Sbjct: 830 QDSYD 834


>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
          Length = 346

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 97  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 156

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 157 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 202

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 203 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 240


>gi|258504172|gb|ACV72780.1| LIM-4 [Caenorhabditis remanei]
          Length = 285

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +G KCA C   +   + V RA+S+VYHL CF C  C + L  GE++ L+ G L C+Q 
Sbjct: 132 REFGPKCASCERLIQSTDWVRRARSYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQH 191

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
           F +              +++ +      +   KR RT     Q    ++ F     P   
Sbjct: 192 FLE--------------LVEGDSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGA 237

Query: 133 -CRKVSTMN--SKRAKNILTPNQR 153
              K++TM   SKR   +   N R
Sbjct: 238 DLEKIATMTGLSKRVTQVWFQNSR 261


>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
 gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
          Length = 383

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 21/138 (15%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KCA+C      ++ VMRA++ ++H+ CF CV C + L  G++F LR   LFC+ D
Sbjct: 72  RLFGTKCAKCNLGFSKNDFVMRARNKIFHIDCFRCVACSRQLIPGDEFALRDDGLFCKAD 131

Query: 76  FE------------------KEMYLMQQSSPSDDMM---LDENCRPRDGRRGPKRPRTIL 114
            +                     Y+   + P ++     L  +   ++      R RT+L
Sbjct: 132 HDVVERASGEVNGNNNNNNNHRTYMASHAEPMNNNRSGSLRPHVHKQETHHKTTRVRTVL 191

Query: 115 TSAQRRQFKSSFEVSPKP 132
              Q    ++ +  +P+P
Sbjct: 192 NEKQLHTLRTCYNANPRP 209


>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
          Length = 415

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +R Y VK C RC   +  +E+VMRA+  V+H+ CF C  C + L  G+
Sbjct: 104 ARDGNIYCKEDYYRRYAVKRCTRCHQGITANELVMRAKDLVFHINCFTCASCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFE 77
           QF ++   ++CR D+E
Sbjct: 164 QFGMQDDLIYCRTDYE 179


>gi|326925561|ref|XP_003208981.1| PREDICTED: LIM/homeobox protein Lhx8-like [Meleagris gallopavo]
          Length = 290

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 41  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 100

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 101 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGVSVEGA 146

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 147 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 184


>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
           mulatta]
          Length = 359

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDE-------NCRPRDGRRGPK--RPRTILTSA 117
           D    +      SP        S  + L +         RP   ++  K  R RT+L   
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGSRGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYAANPRP 216


>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
 gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
 gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
          Length = 374

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 125 TSLGRHTSCYIKDKDIYCKLDYFRRYGTRCSRCGRHIHATDWVRRAKGNVYHLACFACYS 184

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +          
Sbjct: 185 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKRAVENGNRVSVEGA 230

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT     Q        PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 231 LLTEQDINQ--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 268


>gi|348551170|ref|XP_003461403.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
           [Cavia porcellus]
          Length = 404

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFE-----KEMYLMQQSSPSD--------DMMLDE------------ 96
            +++   +  C+ D+      KE  L   SS +D        D + D+            
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 97  ---NCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKP 132
              N    +   G KR  PRT + + Q    K++F  +P P
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPSP 205


>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
 gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
          Length = 383

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +RL+ +K C+RC   +   E+VMRA+  V+H+ CF C  C  PL KG+
Sbjct: 73  ARDGNIYCKEDYYRLFAIKRCSRCQTGISASELVMRAKDMVFHINCFTCTSCGIPLSKGD 132

Query: 62  QFILRSGQLFCRQDFE 77
            F +R+G ++C   +E
Sbjct: 133 HFGMRNGLVYCHPHYE 148



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
            CA CG R+L    ++ A    +H PC  C  C  PL        R G ++C++D+ +
Sbjct: 29 TACAGCGGRILDRYYLL-AVDRQWHSPCLKCTECKSPLDTELTCFARDGNIYCKEDYYR 86


>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
          Length = 385

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C     RLYG K CARC   +   E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 106 ARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGD 165

Query: 62  QFILRSGQLFCRQDFE 77
            + +R   ++CR  +E
Sbjct: 166 TYGIRDAAVYCRLHYE 181


>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
           vitripennis]
          Length = 458

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C      ++ VMRA++ +YHL CF C  C + L  G++F LRS  LFCR 
Sbjct: 102 VRLFGTKCDKCRQSFNKNDFVMRAKTKIYHLECFRCSACMRQLVPGDEFALRSDGLFCRH 161

Query: 75  DFE 77
           D +
Sbjct: 162 DHD 164


>gi|170034026|ref|XP_001844876.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
 gi|167875284|gb|EDS38667.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
          Length = 198

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KC++C   + P + V +A+  V+HL CF C  C + L  GEQF L   ++ C+  ++
Sbjct: 4   FGAKCSKCSRSIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYQ 63

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
                   SS       D+ C   DG  +   KR RT  T  Q    +++F++   P   
Sbjct: 64  DTGDEASNSS-------DDGCST-DGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQ 115

Query: 133 -CRKVSTMN--SKRAKNILTPNQRRQFKSSFEI 162
              +++ +   SKR   +   N R + K    I
Sbjct: 116 DLERIAQLTGLSKRVTQVWFQNSRARQKKHTHI 148


>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
          Length = 348

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 99  TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 158

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 159 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 204

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 205 LLTDQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 242


>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
          Length = 399

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + VK CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 115 AKDGSIYCKEDYYRRFSVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGD 174

Query: 62  QFILRSGQLFCRQDFE 77
           QF ++   ++CR  FE
Sbjct: 175 QFGMKENLVYCRIHFE 190


>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
          Length = 397

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C    FRLYG K C+RC   +   E+VMRA+  V+H+ CF C +C   L KG+
Sbjct: 105 ARDSNIFCKNDYFRLYGSKRCSRCNTTISASELVMRARDLVFHVHCFSCALCSARLTKGD 164

Query: 62  QFILRSGQLFCRQDFE 77
            F +R   ++CR  +E
Sbjct: 165 TFGIRDSAVYCRLHYE 180



 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           CA CG R+     ++ A    +H PC  C  C  PL   ++   R   +FC+ D+
Sbjct: 63  CAGCGARITDRYYLL-ALERRWHTPCLRCCECKMPLDSEQRCYARDSNIFCKNDY 116


>gi|157128769|ref|XP_001661512.1| arrowhead [Aedes aegypti]
 gi|108872464|gb|EAT36689.1| AAEL011247-PA [Aedes aegypti]
          Length = 271

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 7   HVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
            V C     + +G KC++C   + P + V +A+  V+HL CF C  C + L  GEQF L 
Sbjct: 68  QVYCRSDYAKTFGAKCSKCSRTIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALI 127

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKS 124
             ++ C+      ++ M  +  S+    D+ C   DG  +   KR RT  T  Q    ++
Sbjct: 128 DDKVMCK------IHYMDNADDSNSS--DDGCST-DGFNKNKSKRVRTTFTEEQLHILQA 178

Query: 125 SFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           +F++   P      +++ +   SKR   +   N R + K
Sbjct: 179 NFQIDSNPDGQDLERIAQLTGLSKRVTQVWFQNSRARQK 217


>gi|444730493|gb|ELW70875.1| LIM/homeobox protein Lhx4 [Tupaia chinensis]
          Length = 768

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
           +G KC  C   + P ++V +AQ  VYHL CF CVIC + L  G++F ++  G+L C++D+
Sbjct: 364 FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKEDY 423

Query: 77  E----KEMYLMQQSSPSDDMMLD-ENCRPRDGRRGP 107
           E     +  +  +   +D        CR RD   GP
Sbjct: 424 ETAKQNDWAVEGRGWGADSWCWSCSGCRLRDEEEGP 459


>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
          Length = 485

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 247 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 306

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 307 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 352

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 353 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 390


>gi|354468096|ref|XP_003496503.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cricetulus griseus]
          Length = 344

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 105 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 164

Query: 53  CCQPLQKGEQFILRSGQLFCRQDF 76
           C + L  GE+F L   ++ CR  F
Sbjct: 165 CKRQLSTGEEFALVEEKVLCRVHF 188


>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
          Length = 376

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +S++ C     RLYG K CARC   +   E+VMRA+  V+H+ CF C +C  PL KG+
Sbjct: 106 ARDSNIFCKNDYIRLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGD 165

Query: 62  QFILRSGQLFCRQDFE 77
            + +R   ++CR  +E
Sbjct: 166 TYGIRDAAVYCRLHYE 181


>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
          Length = 357

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKEDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++   +L C+ D+E
Sbjct: 134 FYLMEDSRLVCKADYE 149


>gi|170034028|ref|XP_001844877.1| arrowhead [Culex quinquefasciatus]
 gi|167875285|gb|EDS38668.1| arrowhead [Culex quinquefasciatus]
          Length = 213

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KC++C   + P + V +A+  V+HL CF C  C + L  GEQF L   ++ C+  ++
Sbjct: 21  FGAKCSKCSRSIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDDKVMCKIHYQ 80

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
                   SS       D+ C   DG  +   KR RT  T  Q    +++F++   P   
Sbjct: 81  DTGDEASNSS-------DDGCST-DGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQ 132

Query: 133 -CRKVSTMN--SKRAKNILTPNQRRQFKSSFEI 162
              +++ +   SKR   +   N R + K    I
Sbjct: 133 DLERIAQLTGLSKRVTQVWFQNSRARQKKHTHI 165


>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
 gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
          Length = 304

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C       +G KCARC   +   + V RA+  ++HL CF C  C + L  GEQF L  
Sbjct: 57  IYCKADYASTFGAKCARCSRSISASDWVRRARKMIFHLACFACDSCGRQLSTGEQFALAD 116

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRR---GPKRPRTILTSAQRRQFKS 124
            ++ C++ +  E +    SS       D+ C   DG +     KR RT  T  Q +  ++
Sbjct: 117 DKVLCKKHYS-EFFDCGTSS-------DDGCEA-DGLQKSNKSKRVRTTFTEEQLQILQA 167

Query: 125 SFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISS 164
           +F +   P      +++++   SKR   +   N R + K   ++ S
Sbjct: 168 NFNIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHVQVPS 213


>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
 gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
          Length = 334

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     + +G KCARC   +   + V RA+  ++HL CF C  C + L  GEQF L  
Sbjct: 70  IYCKTDYTKRFGTKCARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVD 129

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRR---GPKRPRTILTSAQRRQFKS 124
            ++ C+  +  EM+    SS       D+ C   DG +     KR RT  T  Q +  ++
Sbjct: 130 DKVLCKTHY-SEMFDCGTSS-------DDGCEA-DGYQKNNKTKRVRTTFTEEQLQILQA 180

Query: 125 SFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           +F +   P      +++++   SKR   +   N R + K
Sbjct: 181 NFNIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQK 219


>gi|402590254|gb|EJW84185.1| LIM/homeobox protein Awh [Wuchereria bancrofti]
          Length = 200

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 22/145 (15%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           FR +G KC+ C   +   + V RA++ VYHL CF C  C + L  GE+F L+  +L C+Q
Sbjct: 4   FRRFGTKCSSCQRLIHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQ 63

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP-- 132
            + +              +++  C  +  +   KR RT     Q    ++ F++   P  
Sbjct: 64  HYME--------------LIEGECGQQKAK--AKRVRTTFAEEQLAVLQTHFQIDSNPDG 107

Query: 133 --CRKVSTMN--SKRAKNILTPNQR 153
               +++TM   SKR   +   N R
Sbjct: 108 ADLERIATMTGLSKRVTQVWFQNSR 132


>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
          Length = 218

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +R++ V +C RC   +  +E+VMRA+  VYHL CF C  C  PL KG+
Sbjct: 72  ARDGNIYCKEDYYRMFAVTRCGRCQAGISANELVMRARDSVYHLHCFSCTSCGIPLSKGD 131

Query: 62  QFILRSGQLFCRQDFE 77
            F +R G ++CR  +E
Sbjct: 132 HFGMRDGLIYCRPHYE 147


>gi|47220587|emb|CAG05613.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 317

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA CG  +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 64  ILCRRDYLRLFGVTGNCAACGKMIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDRFFL 123

Query: 66  RSGQLFCRQDFE 77
           ++  + C+ D+E
Sbjct: 124 KNNMILCQLDYE 135


>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
          Length = 555

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C P  +R YG KC  C   + P ++V +A+  V+HL CF C+IC + L  GE+
Sbjct: 157 SRDGKILCKPDFYRRYGKKCNGCAQGISPTDLVRKARDKVFHLNCFTCMICRKQLSTGEE 216

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 217 LYVLEDNKFICKDDY 231


>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
           [Ailuropoda melanoleuca]
          Length = 574

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 335 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 394

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 395 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 440

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 441 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 478


>gi|195998992|ref|XP_002109364.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
 gi|190587488|gb|EDV27530.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
          Length = 208

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 33/168 (19%)

Query: 9   SCHPRGFRLY---------GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK 59
           SC+ +  +LY         G KC  C   +LP EMV R     YH+ C +C++C +  + 
Sbjct: 49  SCYIKDHKLYCKEDYDKRFGRKCQGCNLGILPDEMVYRLHGSCYHINCLLCIVCSRQFKV 108

Query: 60  GEQFILR-SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQ 118
           G+++ +   G+  C++D++  +   Q   P+                  KRPRT +T  Q
Sbjct: 109 GDKYYISDEGKPICKEDYDVAIMYFQLHHPN-----------------LKRPRTSITQQQ 151

Query: 119 RRQFKSSFEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSF 160
            +   S + + P+P R    M +       R   +   N+R + K S 
Sbjct: 152 LKMLNSVYRIKPRPSRITREMIATKVGLDLRVVQVWFQNKRAKDKRSI 199


>gi|157119485|ref|XP_001653405.1| insulinprotein enhancer protein isl [Aedes aegypti]
 gi|108883188|gb|EAT47413.1| AAEL001500-PA, partial [Aedes aegypti]
          Length = 398

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG     ++ VMRA++ +YH+ CF C  C + L  G++F LR  G L+C+
Sbjct: 62  VRLFGTKCDKCGSSFSKNDFVMRAKTKIYHIECFRCSACARQLIPGDEFALRDGGALYCK 121

Query: 74  QDFE-----KEMYLMQQSSPSDDM 92
           +D +      +  L+Q   P++++
Sbjct: 122 EDHDHLEKSNQNSLIQSVEPNNNI 145


>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
 gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
           troglodytes]
 gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
 gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
           gorilla gorilla]
 gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
 gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
 gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
 gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
           sapiens]
 gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
 gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
          Length = 359

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSPSDDMML---------------DENCRPRDGRRGPK--RPRTILTSA 117
           D    +      SP     L                   RP   ++  K  R RT+L   
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYAANPRP 216


>gi|307196005|gb|EFN77730.1| Protein apterous [Harpegnathos saltator]
          Length = 319

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
          +CARC   +L  E+VMRA+  V+H+ CF C  C  PL KG+ F +R G + CR  +E
Sbjct: 7  RCARCQAAILASELVMRARELVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYE 63


>gi|170034024|ref|XP_001844875.1| arrowhead [Culex quinquefasciatus]
 gi|167875283|gb|EDS38666.1| arrowhead [Culex quinquefasciatus]
          Length = 257

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           +  V C     + Y   C +C   + P + V RA+  V+HL CF C  C + L  GEQF 
Sbjct: 52  DGEVYCKTDYIKKYKAACTKCSRSISPSDWVRRARDFVFHLACFSCDTCSRQLSTGEQFA 111

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           +   ++ C+  +   M L+   + S +   D +     G+   KR RT  T  Q +  ++
Sbjct: 112 IIDDRVLCKAHY---MELIDDGTTSSEDGCDVD---GTGKNKTKRIRTTFTEEQIQILQA 165

Query: 125 SFEVSPKPCRK------VSTMNSKRAKNILTPNQR 153
           +F++   P  +      ++T  SKR   +   N R
Sbjct: 166 NFQIDSNPDGQDLERIALATGLSKRVTQVWFQNSR 200


>gi|46276323|gb|AAS86420.1| lhx7 [Oryzias latipes]
          Length = 191

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS  SH SC+ +          FR YG  CA CG  +   + V RA+ +VYHL CF C  
Sbjct: 19  TSLGSHASCYIKEKEIFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFS 78

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFE 77
           C + L  GE+F L  G++ CR  ++
Sbjct: 79  CKRQLSTGEEFALVEGKVLCRIHYD 103


>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
           porcellus]
          Length = 371

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G+KCA+C       ++VMRA+  V+H+ CF C +C + L  G++F LR  +L CR D
Sbjct: 83  RLFGIKCAKCQVGFSSSDLVMRARDSVFHVECFRCAVCSRQLLPGDEFSLREHELLCRAD 142

Query: 76  FEKEMYLMQQSSP--------SDDMMLDE-------NCRPRDGRRGPK--RPRTILTSAQ 118
               +      SP        +  + L E         RP   ++  K  R RT+L   Q
Sbjct: 143 HGLLLERAAAGSPRSPGPIPGARALHLPEPVPGQQPALRPHVHKQAEKTTRVRTVLNEKQ 202

Query: 119 RRQFKSSFEVSPKP 132
               ++ +  +P+P
Sbjct: 203 LHTLRTCYAANPRP 216


>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
          Length = 558

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           S + ++ C    +R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C   L KG
Sbjct: 226 SRDGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARELVFHVRCFSCAACAVLLMKG 285

Query: 61  EQFILRSGQLFCRQDFE 77
           + F +R G + CR  +E
Sbjct: 286 DHFGMRDGAVLCRLHYE 302


>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
           troglodytes]
 gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
           gorilla gorilla]
          Length = 360

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 18/136 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  DFEKEMYLMQQSSP--------SDDMMLDENC--------RPRDGRRGPK--RPRTILTS 116
           D    +      SP        +  + L  +         RP   ++  K  R RT+L  
Sbjct: 142 DHGLLLERAAAGSPRSPGPLPGARGLHLPADAGSGRQPALRPHVHKQTEKTTRVRTVLNE 201

Query: 117 AQRRQFKSSFEVSPKP 132
            Q    ++ +  +P+P
Sbjct: 202 KQLHTLRTCYAANPRP 217


>gi|194758653|ref|XP_001961576.1| GF14867 [Drosophila ananassae]
 gi|190615273|gb|EDV30797.1| GF14867 [Drosophila ananassae]
          Length = 550

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 111 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 170

Query: 74  QDFE 77
           +D +
Sbjct: 171 EDHD 174


>gi|17568917|ref|NP_508669.1| Protein LIM-4 [Caenorhabditis elegans]
 gi|1621631|gb|AAB17273.1| putative transcription factor LIM-4 [Caenorhabditis elegans]
 gi|351063300|emb|CCD71434.1| Protein LIM-4 [Caenorhabditis elegans]
          Length = 355

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 20/158 (12%)

Query: 6   SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           +HV+      R  G KCA C   +   + V RA+++VYHL CF C  C + L  GE++ L
Sbjct: 152 THVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYAL 211

Query: 66  RSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSS 125
           + G L C+Q F +              +++ +      +   KR RT     Q    ++ 
Sbjct: 212 QEGNLLCKQHFLE--------------LVEGDSGVSSQKAKTKRVRTTFAEDQLSVLQTY 257

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           F     P      K+++M   SKR   +   N R + K
Sbjct: 258 FNRDSNPDGADLEKIASMTGLSKRVTQVWFQNSRARQK 295


>gi|209489466|gb|ACI49225.1| hypothetical protein Csp3_JD05.010 [Caenorhabditis angaria]
          Length = 344

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 34/165 (20%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C   L   E+V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 44  SRDGLILCKNDFSRRYGQRCAGCDGNLDKEELVRRARDKVFHIQCFQCSVCQRLLATGDQ 103

Query: 63  -FILRSGQLFCRQDFEKEMYL-------------------MQQSSPSDDMMLDE---NCR 99
            +IL   +  C+ DF+                        +++ +  D+  +DE   +  
Sbjct: 104 LYILEGNRFVCQTDFQNATKTSTPTSSHRPLSNGSDCASDIEEDTICDEFQVDEIDGDMM 163

Query: 100 PRDG--------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
            +D         RRG   PRT + + Q    KS+F  +PKP R +
Sbjct: 164 GKDNSDDSNSAKRRG---PRTTIKAKQLETLKSAFAATPKPTRHI 205


>gi|56694840|gb|AAW23082.1| Islet [Oikopleura dioica]
          Length = 381

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N    C     RLY   CA+C   L P ++V + ++  +H+ CF C  C + L  G++F+
Sbjct: 89  NELAYCKEDYERLYMEHCAKCDHALQPTDLVHKVKNCTFHVDCFSCSSCVRVLVSGDEFL 148

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPK--RPRTILTSAQRRQF 122
           L   +LFCR   E E    +Q+           CR  + R  PK  R RT+L   Q    
Sbjct: 149 LIETRLFCRPCHELESEQSRQNQF--------RCREMERRNKPKTTRVRTVLNEKQLHTL 200

Query: 123 KSSFEVSPKP 132
           ++ ++ +P+P
Sbjct: 201 RTCYQANPRP 210


>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
          Length = 442

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 193 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 252

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 253 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 298

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 299 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 336


>gi|157134682|ref|XP_001663345.1| arrowhead [Aedes aegypti]
 gi|108870378|gb|EAT34603.1| AAEL013168-PA, partial [Aedes aegypti]
          Length = 306

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     + +G KCARC   +   + V RA+   +HL CF C  C + L  GEQF L  
Sbjct: 55  IYCKNDYTKTFGAKCARCCRSISASDWVRRARELTFHLACFACDSCGRQLSTGEQFALVD 114

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRG--PKRPRTILTSAQRRQFKSS 125
            ++ C+  +  EM+    SS       D+ C     ++    KR RT  T  Q +  +++
Sbjct: 115 DKVLCKTHY-SEMFDCGTSS-------DDGCEADGFQKSNKTKRVRTTFTEEQLQILQAN 166

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEI 162
           F +   P      +++++   SKR   +   N R + K   ++
Sbjct: 167 FNIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHVQV 209


>gi|195484275|ref|XP_002090625.1| GE12696 [Drosophila yakuba]
 gi|194176726|gb|EDW90337.1| GE12696 [Drosophila yakuba]
          Length = 540

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|198473929|ref|XP_001356494.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
 gi|198138172|gb|EAL33558.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
          Length = 548

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|195147414|ref|XP_002014675.1| GL18825 [Drosophila persimilis]
 gi|194106628|gb|EDW28671.1| GL18825 [Drosophila persimilis]
          Length = 550

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|1895062|gb|AAB49892.1| LIM homeobox protein [Drosophila melanogaster]
          Length = 534

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|194879942|ref|XP_001974333.1| GG21675 [Drosophila erecta]
 gi|190657520|gb|EDV54733.1| GG21675 [Drosophila erecta]
          Length = 534

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|17136568|ref|NP_476775.1| tailup, isoform A [Drosophila melanogaster]
 gi|195580000|ref|XP_002079844.1| GD21801 [Drosophila simulans]
 gi|7298500|gb|AAF53720.1| tailup, isoform A [Drosophila melanogaster]
 gi|194191853|gb|EDX05429.1| GD21801 [Drosophila simulans]
          Length = 534

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
          Length = 278

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 17/153 (11%)

Query: 7   HVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           ++ C     R +G KCA+C   +   + V RA+ +VYHL CF C  C + L  GE+F L 
Sbjct: 91  NIYCRNDYSREFGTKCAKCYRTIQSTDWVRRARENVYHLACFACDSCKRQLSTGEEFALH 150

Query: 67  SGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSF 126
             ++ C+  +   M L++  S  D       C  +      KR RT  T  Q +  +++F
Sbjct: 151 GDRVLCKSHY---MELLEGGSSKDS-----ECSQKS---KAKRVRTTFTEDQLQVLQANF 199

Query: 127 EVSPKP----CRKVSTMN--SKRAKNILTPNQR 153
           ++   P      +++ +   SKR   +   N R
Sbjct: 200 QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 232



 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 19  GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
           G  C  CGD L+    ++      +H+ C  C IC   L++     +R   ++CR D+ +
Sbjct: 42  GDLCYGCGD-LITERFLLHVNGQAWHVGCLRCCICQIGLERQTSCFIREDNIYCRNDYSR 100

Query: 79  EM 80
           E 
Sbjct: 101 EF 102


>gi|195344936|ref|XP_002039032.1| GM17053 [Drosophila sechellia]
 gi|194134162|gb|EDW55678.1| GM17053 [Drosophila sechellia]
          Length = 534

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|195433046|ref|XP_002064526.1| GK23894 [Drosophila willistoni]
 gi|194160611|gb|EDW75512.1| GK23894 [Drosophila willistoni]
          Length = 539

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 107 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 166

Query: 74  QDFE 77
           +D +
Sbjct: 167 EDHD 170


>gi|195114382|ref|XP_002001746.1| GI17017 [Drosophila mojavensis]
 gi|193912321|gb|EDW11188.1| GI17017 [Drosophila mojavensis]
          Length = 533

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 117 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 176

Query: 74  QDFE 77
           +D +
Sbjct: 177 EDHD 180


>gi|195386470|ref|XP_002051927.1| GJ24442 [Drosophila virilis]
 gi|194148384|gb|EDW64082.1| GJ24442 [Drosophila virilis]
          Length = 529

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|395536948|ref|XP_003770470.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
          Length = 362

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 113 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 172

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENC----RPRDGRRGPK 108
           C + L  GE+F L   ++ CR  ++  M  +++   + + +  E      +  +  +  K
Sbjct: 173 CKRQLSTGEEFALVEEKVLCRVHYDCMMDNLKREVENGNGISVEGALLSEQDVNHPKPAK 232

Query: 109 RPRTILTSAQRRQFKSSF 126
           R RT  T+ Q +  ++ F
Sbjct: 233 RARTSFTADQLQVMQAQF 250


>gi|258504166|gb|ACV72777.1| LIM-4 [Caenorhabditis remanei]
 gi|258504168|gb|ACV72778.1| LIM-4 [Caenorhabditis remanei]
 gi|258504170|gb|ACV72779.1| LIM-4 [Caenorhabditis remanei]
 gi|258504174|gb|ACV72781.1| LIM-4 [Caenorhabditis remanei]
 gi|258504176|gb|ACV72782.1| LIM-4 [Caenorhabditis remanei]
 gi|258504178|gb|ACV72783.1| LIM-4 [Caenorhabditis remanei]
 gi|258504180|gb|ACV72784.1| LIM-4 [Caenorhabditis remanei]
 gi|258504182|gb|ACV72785.1| LIM-4 [Caenorhabditis remanei]
 gi|258504188|gb|ACV72788.1| LIM-4 [Caenorhabditis remanei]
 gi|258504190|gb|ACV72789.1| LIM-4 [Caenorhabditis remanei]
          Length = 285

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +G KCA C   +   + V RA+++VYHL CF C  C + L  GE++ L+ G L C+Q 
Sbjct: 132 REFGPKCASCERLIQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQH 191

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
           F +              +++ +      +   KR RT     Q    ++ F     P   
Sbjct: 192 FLE--------------LVEGDSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGA 237

Query: 133 -CRKVSTMN--SKRAKNILTPNQR 153
              K++TM   SKR   +   N R
Sbjct: 238 DLEKIATMTGLSKRVTQVWFQNSR 261


>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
 gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
          Length = 253

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 40/193 (20%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + VK C+ C   +   E+VMRA+  VYH+ CF C  C + L  GE
Sbjct: 51  SKDGVILCREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGE 110

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR-------------------- 101
            F +R  +++C++D+E E+   +  +P+    L +  RPR                    
Sbjct: 111 YFGMRGIRIYCKEDYE-ELLREESRNPTKINSLSKG-RPRKRRIATAIESITNLGYDLSD 168

Query: 102 ---------DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK------VSTMNSKRAKN 146
                    DGR  PKR RT     Q R  K+ F ++  P  K        T  +KR   
Sbjct: 169 RPGELTTGADGR--PKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQ 226

Query: 147 ILTPNQRRQFKSS 159
           +   N R +F+ +
Sbjct: 227 VWFQNARAKFRRT 239


>gi|195163209|ref|XP_002022444.1| GL13034 [Drosophila persimilis]
 gi|194104436|gb|EDW26479.1| GL13034 [Drosophila persimilis]
          Length = 332

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 64  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 123

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 124 LYVLDDNKFICKDDY 138


>gi|258504160|gb|ACV72774.1| LIM-4 [Caenorhabditis remanei]
 gi|258504162|gb|ACV72775.1| LIM-4 [Caenorhabditis remanei]
 gi|258504164|gb|ACV72776.1| LIM-4 [Caenorhabditis remanei]
 gi|258504184|gb|ACV72786.1| LIM-4 [Caenorhabditis remanei]
 gi|258504186|gb|ACV72787.1| LIM-4 [Caenorhabditis remanei]
          Length = 285

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           R +G KCA C   +   + V RA+++VYHL CF C  C + L  GE++ L+ G L C+Q 
Sbjct: 132 REFGPKCASCERLIQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEGNLLCKQH 191

Query: 76  FEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP--- 132
           F   + L++  S                +   KR RT     Q    ++ F     P   
Sbjct: 192 F---LELVEGDSGVSSQ-----------KAKTKRVRTTFADDQLSVLQTYFNRDSNPDGA 237

Query: 133 -CRKVSTMN--SKRAKNILTPNQR 153
              K++TM   SKR   +   N R
Sbjct: 238 DLEKIATMTGLSKRVTQVWFQNSR 261


>gi|426223096|ref|XP_004023228.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like
           [Ovis aries]
          Length = 370

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPH----EMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           N  + C    F  +G KCARCG +  P     + V RA+ + YHL CF C  C + L  G
Sbjct: 132 NKEIFCKMDYFSRFGTKCARCGRQSTPEIYASDWVRRARGNAYHLACFACFSCKRQLSTG 191

Query: 61  EQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSA 117
           E+F L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ 
Sbjct: 192 EEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAE 251

Query: 118 Q 118
           Q
Sbjct: 252 Q 252


>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
          Length = 498

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C     R YG KCA C   + P+++V RA++ V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCRTDFVRRYGTKCAGCSHGIAPNDLVRRARNKVFHLKCFTCMVCSKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDF 76
            +++   Q  C+ D+
Sbjct: 105 LYVVDENQYICKDDY 119


>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 381

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 90  NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFG 149

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMML 94
           L   ++ CR  ++  +  +++++ S +  L
Sbjct: 150 LVEEKVLCRIHYDTMVENLKRAAESGERRL 179


>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
          Length = 498

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    FR +G KC  C   + P+++V RA++ V+HL CF C++C + L  GE+
Sbjct: 66  SRDGKLYCREDFFRRFGTKCGGCSQGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEE 125

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C++D+
Sbjct: 126 LYVLDENKFICKEDY 140


>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
           catus]
          Length = 309

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 74  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133

Query: 63  F-ILRSGQLFCRQDFE----KEMYLMQQSSPSDDMMLDE 96
           F  +   +L C+ D+E    +  +   Q S +D    DE
Sbjct: 134 FSFMEDSRLVCKADYETAKQRGQWEEGQDSDADVSFTDE 172


>gi|307209962|gb|EFN86739.1| Insulin gene enhancer protein ISL-1 [Harpegnathos saltator]
          Length = 407

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +C      ++ VMRA++ +YH+ CF C  C + L+ G++F LR   LFCR D
Sbjct: 61  RLFGTKCDKCSQCFSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHD 120

Query: 76  FE 77
            +
Sbjct: 121 HD 122


>gi|17136566|ref|NP_476774.1| tailup, isoform B [Drosophila melanogaster]
 gi|5052638|gb|AAD38649.1|AF145674_1 tailup [Drosophila melanogaster]
 gi|22946785|gb|AAN11018.1| tailup, isoform B [Drosophila melanogaster]
 gi|220942306|gb|ACL83696.1| tup-PB [synthetic construct]
 gi|220952524|gb|ACL88805.1| tup-PB [synthetic construct]
          Length = 465

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C+
Sbjct: 109 VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCK 168

Query: 74  QDFE 77
           +D +
Sbjct: 169 EDHD 172


>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
          Length = 481

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C    +R YG KC  C + + P+++V RA++ V+HL CF C++C + L  GE+
Sbjct: 46  SRDGRLYCRQDFYRRYGTKCGGCAEGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEE 105

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 106 LYVLDENKFICKSDY 120


>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
 gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
           AltName: Full=Insulin gene enhancer protein isl-3;
           Short=Islet-3
 gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
 gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
 gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
          Length = 358

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F +R  +L CR 
Sbjct: 82  VRLFGIKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRA 141

Query: 75  DFEKEMYLMQQSSPSD-----DMMLDENCRPRDGRRGP------------KRPRTILTSA 117
           D    +      SP          L     P   R+ P             R RT+L   
Sbjct: 142 DHGLALERGPGGSPLSPGNIHTRGLHMAADPVSVRQTPHRNHVHKQSEKTTRVRTVLNEK 201

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 202 QLHTLRTCYNANPRP 216


>gi|242023959|ref|XP_002432398.1| Ultrabithorax, putative [Pediculus humanus corporis]
 gi|212517821|gb|EEB19660.1| Ultrabithorax, putative [Pediculus humanus corporis]
          Length = 305

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
          +CARC   +   E+VMRA+  V+H+ CF C +C   L KG+ F LR G ++CR  ++
Sbjct: 6  RCARCQAAISSSELVMRARDFVFHVHCFTCTVCNSTLTKGDHFGLRDGAIYCRTHYD 62


>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
          Length = 423

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 76/196 (38%), Gaps = 56/196 (28%)

Query: 16  RLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           RL+   +CARC   +   ++VMRA++HVYHL CF C  C + LQ G+ F LR   ++C+ 
Sbjct: 147 RLFSTQRCARCNMGIQSTDLVMRARNHVYHLTCFTCFTCNKALQAGDTFGLREHLVYCQV 206

Query: 75  DFEKEMYLMQQSSPSDDMMLD-----------ENCRPRDGRRGP---------------- 107
            +E   Y  +  + S DM              +  RPR  RR P                
Sbjct: 207 HYENS-YHAEYIALSPDMNAGQMPYYNGVGTLQKGRPRK-RRSPNISSDEFAHNIGLGAD 264

Query: 108 --------------------KRPRTILTSAQRRQFKSSFEVSPKPCRK------VSTMNS 141
                               KR RT     Q R  KS F V+  P  K        T  +
Sbjct: 265 SLDRAGDMIDRDTYQNAPRQKRMRTSFKHHQLRTLKSYFAVNHNPGAKDLKHLAQKTGLT 324

Query: 142 KRAKNILTPNQRRQFK 157
           KR   +   N R +F+
Sbjct: 325 KRVLQVWFQNARAKFR 340



 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
           CA CGD L+     +   ++ +H  C  C  C   L        R G  +CR D+++
Sbjct: 92  CAGCGD-LITERYYLNVANNAWHFNCLKCYECKSTLDTERSCYERMGNYYCRDDYQR 147


>gi|13516919|dbj|BAB40339.1| islet [Halocynthia roretzi]
          Length = 432

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 17  LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
           L+G KC +CG     ++ VMRA++ +YH+ CF CV C + L  G++F LR   LFC+ D 
Sbjct: 82  LFGTKCNKCGLGFTKNDFVMRARNKIYHIECFKCVACSKQLIPGDEFALREDGLFCKADH 141

Query: 77  E 77
           +
Sbjct: 142 D 142


>gi|74355157|gb|AAI03939.1| LIM homeobox 6 [Homo sapiens]
          Length = 362

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL  F C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHL-AFACFSCKRQLSTGEEFG 172

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGP---KRPRTILTSAQRRQ 121
           L   ++ CR  ++  +  +++++ + + +  E   P +    P   KR RT  T+ Q + 
Sbjct: 173 LVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQV 232

Query: 122 FKSSFEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
            ++ F     P     +K++ M   S+R   +   N R + K
Sbjct: 233 MQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 274


>gi|158296015|ref|XP_316574.4| AGAP006536-PA [Anopheles gambiae str. PEST]
 gi|157016309|gb|EAA11386.5| AGAP006536-PA [Anopheles gambiae str. PEST]
          Length = 291

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           V C     +++G KC++C   +   + V +A+  V+HL CF C  C + L  GEQF L  
Sbjct: 83  VYCRTDYIKMFGAKCSKCCRTIAASDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALID 142

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKSS 125
            ++ C+  +   M  ++  S S     D+ C   DG  +   KR RT  T  Q +  +++
Sbjct: 143 DKVMCKIHY---MDTVEDGSNSS----DDGC-SSDGYNKNKSKRVRTTFTEEQLQVLQAN 194

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           F++   P      +++ +   SKR   +   N R + K
Sbjct: 195 FQIDSNPDGQDLERIAQLTGLSKRVTQVWFQNSRARQK 232


>gi|307196006|gb|EFN77731.1| LIM/homeobox protein Lhx9 [Harpegnathos saltator]
          Length = 433

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C     RL+ V +C+RC   +   E+VMRA+  VYH+ CF C  C  PL KG+
Sbjct: 100 ARDGNIYCKEDYCRLFAVSRCSRCRAGISASELVMRARELVYHVACFTCASCGTPLNKGD 159

Query: 62  QFILRSGQLFCRQDFE 77
            F  R G ++CR  +E
Sbjct: 160 HFGQRDGLVYCRPHYE 175


>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
          Length = 304

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 76  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++   +L C+ D+E
Sbjct: 136 FYLMEDSRLVCKADYE 151


>gi|170577993|ref|XP_001894217.1| Homeobox domain containing protein [Brugia malayi]
 gi|158599257|gb|EDP36927.1| Homeobox domain containing protein [Brugia malayi]
          Length = 452

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KC+ C   +   + V RA++ VYHL CF C  C + L  GE+F L+  +L C+Q + 
Sbjct: 258 FGTKCSSCQRLIHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHYM 317

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP----C 133
           +              +++  C  +  +   KR RT     Q    ++ F++   P     
Sbjct: 318 E--------------LIEGECGQQKAK--TKRVRTTFAEEQLAVLQTHFQIDSNPDGADL 361

Query: 134 RKVSTMN--SKRAKNILTPNQRRQFK 157
            +++TM   SKR   +   N R + K
Sbjct: 362 ERIATMTGLSKRVTQVWFQNSRARQK 387


>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
          Length = 462

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 39/174 (22%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 223 TSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFS 282

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRT 112
           C + L  GE+F L   ++ CR  +              D MLD   R  +   G      
Sbjct: 283 CKRQLSTGEEFALVEEKVLCRVHY--------------DCMLDNLKREVENGNGISVEGA 328

Query: 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMP 166
           +LT              PKP        +KRA+   T +Q +  ++ F   + P
Sbjct: 329 LLTEQDVNH--------PKP--------AKRARTSFTADQLQVMQAQFAQDNNP 366


>gi|443696309|gb|ELT97042.1| hypothetical protein CAPTEDRAFT_167444 [Capitella teleta]
          Length = 444

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + + ++ C    +R + VK CARC   +  HEMVM+A+  V+HL CF C +C + L  GE
Sbjct: 141 AKDGNIYCKEDYYRRFAVKQCARCHMSIASHEMVMKARQMVFHLNCFTCCVCMKMLTPGE 200

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  +E
Sbjct: 201 HFGMQHDMVYCRVHYE 216


>gi|307184076|gb|EFN70611.1| Insulin gene enhancer protein ISL-1 [Camponotus floridanus]
          Length = 408

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +C      ++ VMRA++ +YH+ CF C  C + L+ G++F LR   LFCR D
Sbjct: 61  RLFGTKCDKCSQCFSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHD 120

Query: 76  FE 77
            +
Sbjct: 121 HD 122


>gi|432915645|ref|XP_004079190.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oryzias latipes]
          Length = 314

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
           FR YG +CARCG  +   + V RA+   +HL CF C  C + L  GE+  L   ++FCR 
Sbjct: 89  FRRYGTRCARCGRNIHSTDWVRRAKGSTFHLACFSCASCKRQLSTGEECGLFENRVFCRP 148

Query: 75  DFEKEMYLMQQSSPSDDMMLDENCRPRDGR---RGPKRPRTILTSAQRRQFKSSFEVSPK 131
            ++  M  +++S  ++    ++    ++     R  KR RT  T  Q +  ++ F     
Sbjct: 149 HYDVAMENLKRSKENEQPQPEDRSANKESSTVGRPAKRARTSFTVDQLQVMQTQFAKDNN 208

Query: 132 P 132
           P
Sbjct: 209 P 209


>gi|595301|gb|AAA80275.1| LIM domain homeobox protein, partial [Danio rerio]
          Length = 167

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F +R  +L CR 
Sbjct: 12  VRLFGIKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRA 71

Query: 75  DFEKEMYLMQQSSPSD-----DMMLDENCRPRDGRRGP------------KRPRTILTSA 117
           D    +      SP          L     P   R+ P             R RT+L   
Sbjct: 72  DHGLALERGPGGSPLSPGNIHTRGLHMAADPVSVRQTPHRNHVHKQSEKTTRVRTVLNEK 131

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 132 QLHTLRTCYNANPRP 146


>gi|391340116|ref|XP_003744391.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Metaseiulus
           occidentalis]
          Length = 460

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC++CG      + VMRA+  ++H+ CF C+ C + L  G++F +R  +LFC+ D
Sbjct: 160 RLFGAKCSKCGLSFSRSDFVMRARGKIFHIDCFRCIACSRQLIPGDEFAIREDELFCKAD 219

Query: 76  FE 77
            +
Sbjct: 220 HD 221


>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
           Transcription Factors, The Lim-Homeodomain Proteins, In
           Neural Cell Type Specification
 gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
           Transcription Factors, The Lim-Homeodomain Proteins, In
           Neural Cell Type Specification
          Length = 169

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++
Sbjct: 49  SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 108

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++  G+L C++D+E
Sbjct: 109 FYLMEDGRLVCKEDYE 124


>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
 gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
          Length = 528

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|170048222|ref|XP_001870660.1| lim homeobox protein [Culex quinquefasciatus]
 gi|167870354|gb|EDS33737.1| lim homeobox protein [Culex quinquefasciatus]
          Length = 338

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
          +CARCG  +   E+VMRA+  ++H+ CF C IC Q L+ G+   +R G+LFC + ++ ++
Sbjct: 15 RCARCGSGINASELVMRAKDLIFHVNCFSCAICGQLLRGGDTAGIREGRLFCGEHYDTDV 74


>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
 gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
          Length = 402

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 8   VSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + VK CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 106 IYCKDDYYRRFSVKRCARCHLGISASEMVMRARDLVYHLSCFTCATCNKALATGDHFGMK 165

Query: 67  SGQLFCRQDFEKEMY 81
              ++CR  +E  ++
Sbjct: 166 DAMVYCRSHYEAMLH 180


>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
 gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
 gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
           LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
           493 [Rattus norvegicus]
          Length = 360

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  D 75
           D
Sbjct: 142 D 142


>gi|405963181|gb|EKC28778.1| LIM domain transcription factor LMO4.1 [Crassostrea gigas]
          Length = 165

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 15  FRLY--GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC 72
            RL+  G  CA CG  +  +EMVMR Q +VYHL CF C  C  PL  G++F + +G + C
Sbjct: 77  MRLFCSGGSCAGCGQSIPANEMVMRTQGNVYHLKCFNCYTCNMPLSPGDRFGVVNGNIIC 136

Query: 73  RQDFEKE 79
             D+ K 
Sbjct: 137 ENDYSKA 143


>gi|383858654|ref|XP_003704814.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Megachile
           rotundata]
          Length = 416

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C +     + VMRA+S +YH+ CF C  C + L  G++F LR   LFCR 
Sbjct: 66  VRLFGTKCDKCSECFSKDDYVMRAKSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRH 125

Query: 75  DFE 77
           D +
Sbjct: 126 DHD 128


>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
 gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
           9
 gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
          Length = 331

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C    +R    +CARC   +   EMVMRA+  VYHL CF C  C + L  G+QF ++ 
Sbjct: 120 IYCKEDYYRFSVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKE 179

Query: 68  GQLFCRQDFE 77
             ++CR  FE
Sbjct: 180 NLVYCRIHFE 189


>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
          Length = 511

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCR 73
           FR YG KC  CG  + P ++V +A+  V+HL CF C++C + L  GE+ ++L   +  C+
Sbjct: 130 FRRYGTKCGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICK 189

Query: 74  QDF 76
            D+
Sbjct: 190 DDY 192


>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
 gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
          Length = 501

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
 gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
          Length = 500

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
          Length = 359

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  D 75
           D
Sbjct: 142 D 142


>gi|148237976|ref|NP_001079958.1| LIM homeobox 8 [Xenopus laevis]
 gi|34784686|gb|AAH57730.1| MGC68912 protein [Xenopus laevis]
          Length = 282

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   H SC+ +          FR YG +C+RCG  +   + V RA+ +VYHL CF C  
Sbjct: 125 TSLGRHTSCYIKDKDIYCKLDYFRRYGTRCSRCGRHIHATDWVRRAKGNVYHLACFACYS 184

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFE 77
           C + L  GE+F L   ++ CR  ++
Sbjct: 185 CKRQLSTGEEFALVEEKVLCRVHYD 209


>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
          Length = 359

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  D 75
           D
Sbjct: 142 D 142


>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
          Length = 464

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           + +S + C    FR +G KCA C   +LP+++V RA++ V+HL CF C  C + +  GE+
Sbjct: 45  TRDSKLYCREDFFRRFGTKCAGCTQGILPNDLVRRARNKVFHLKCFTCAACAKQMATGEE 104

Query: 63  -FILRSGQLFCR 73
            F++   +  C+
Sbjct: 105 LFVVDDDKFICK 116


>gi|256079939|ref|XP_002576241.1| lim homeobox protein [Schistosoma mansoni]
 gi|350644840|emb|CCD60434.1| lim homeobox protein,putative [Schistosoma mansoni]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 26/127 (20%)

Query: 41  HVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK----EMYLMQQSSPSDDMMLDE 96
           + +H  C  C IC   L   ++ ++R+ +L+CR D+ K    E+Y M   S S       
Sbjct: 27  NTWHEQCVTCSICHCLLH--DKCLVRNEKLYCRNDYIKMDDDELYEMDSDSESG------ 78

Query: 97  NCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTP 150
                   +  KRPRTILT+ QRR+FK+ FE +PKP RK+       T  + R   +   
Sbjct: 79  --------KNSKRPRTILTANQRRRFKAVFEFNPKPTRKIREALATETGLNIRVVQVWFQ 130

Query: 151 NQRRQFK 157
           NQR + K
Sbjct: 131 NQRAKIK 137


>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
 gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
 gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
 gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
          Length = 359

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G+KCA+C       ++VMRA+  VYH+ CF C +C + L  G++F LR  +L CR 
Sbjct: 82  VRLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141

Query: 75  D 75
           D
Sbjct: 142 D 142


>gi|91078266|ref|XP_971202.1| PREDICTED: similar to GA10520-PA [Tribolium castaneum]
          Length = 343

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     + +G KC+ C   +   + V +A+ HVYHL CF C  C + L  GE+F L  
Sbjct: 130 IYCKADYAKSFGAKCSVCSRGISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHE 189

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            ++ C+  + +   L   ++ SDD    E       +   KR RT  T  Q +  +++F+
Sbjct: 190 DRVLCKAHYLET--LDGGTTSSDDGCDAEGYH----KNKAKRVRTTFTEEQLQVLQANFQ 243

Query: 128 VSPKP----CRKVSTMN--SKRAKNILTPNQR 153
           +   P      +++ +   SKR   +   N R
Sbjct: 244 LDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 275


>gi|356577835|ref|XP_003557027.1| PREDICTED: insulin gene enhancer protein isl-1-like, partial
           [Glycine max]
          Length = 289

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCR 73
            RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR  G L+C+
Sbjct: 62  VRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSSCARQLLPGDEFALRDGGALYCK 121

Query: 74  QDFE 77
           +D +
Sbjct: 122 EDHD 125


>gi|328707561|ref|XP_003243430.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
           [Acyrthosiphon pisum]
          Length = 487

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C       E+VMRA++ VYH+ CF C  C + L  G++F LR   L C+Q
Sbjct: 131 VRLFGTKCDKCNLSFDRTELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCKQ 190

Query: 75  DFE 77
           D +
Sbjct: 191 DHD 193


>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
 gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
          Length = 506

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
           purpuratus]
          Length = 474

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C     + YG+K CARC   +  HEMVMRA+  VYHL CF C +C   L  G+ + +R
Sbjct: 101 IYCKEDYLKRYGIKKCARCHVGIESHEMVMRARELVYHLACFSCAVCNLELHTGDYYGMR 160

Query: 67  SGQLFCRQDFE 77
              ++C+  +E
Sbjct: 161 ENLVYCQLHYE 171


>gi|426247330|ref|XP_004017439.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Ovis
           aries]
          Length = 386

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 21/188 (11%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KCA C   + P ++V +A+S V+HL CF C++C + L  GE+
Sbjct: 45  SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRP--RDGRRGPKRPRTILTSAQR 119
            +++   +  C+ D+     L + S  S     D +  P  +D  +   +     TS+ +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDK 164

Query: 120 R------------QFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFE 161
                          K++F  +PKP R +       T  + R   +   N+R + +   +
Sbjct: 165 ETANNENEEQNLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 224

Query: 162 ISSMPCRK 169
           +S++  R+
Sbjct: 225 LSALGARR 232


>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
 gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
          Length = 498

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
 gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
          Length = 503

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
           9
 gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
          Length = 377

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F +R
Sbjct: 99  IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMR 158

Query: 67  SGQLFCRQDFE 77
              ++CR  FE
Sbjct: 159 ENLVYCRAHFE 169


>gi|348531406|ref|XP_003453200.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
          Length = 386

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 2   TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
           TS   HVSC+ R          FR YG +CARCG  +   + V RA+   +HL CF C  
Sbjct: 138 TSLGRHVSCYIRDKEVFCKLDYFRRYGTRCARCGRNIHSSDWVRRARGSTFHLACFSCTS 197

Query: 53  CCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMM----LDENCRPRDGRRGPK 108
           C + L  GE+  L   ++FCR  ++  +  ++++  + + M     D N       +  K
Sbjct: 198 CKRQLSTGEECGLLENRVFCRPHYDIMIENLKRAKENSECMNGQGSDLNYSKLILPKPAK 257

Query: 109 RPRTILTSAQRRQFKSSFEVSPKP 132
           R RT  T  Q +  ++ F     P
Sbjct: 258 RARTSFTVDQLQVMQTQFAKDNNP 281


>gi|442630038|ref|NP_001261380.1| arrowhead, isoform D [Drosophila melanogaster]
 gi|440215264|gb|AGB94075.1| arrowhead, isoform D [Drosophila melanogaster]
          Length = 271

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           V C     + +G KC++C   +   + V RA+  V+HL CF C  C + L  GEQF L  
Sbjct: 55  VYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMD 114

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDG--RRGPKRPRTILTSAQRRQFKSS 125
            ++ C+  + + +     SS       DE C   DG  +   KR RT  T  Q +  +++
Sbjct: 115 DRVLCKAHYLETVEGGTTSS-------DEGCDG-DGYHKSKTKRVRTTFTEEQLQVLQAN 166

Query: 126 FEVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSL 179
           F++   P      +++++   SKR   +   N R + K        P          L L
Sbjct: 167 FQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHAVREPEGSSFARHINLQL 226

Query: 180 GMSLQDSSDS--IFASSTKPLNPNHPYSPDD 208
             S Q+++ +      S   L P H  S D+
Sbjct: 227 TYSFQNNAQNPMHLNGSKAGLYPTHESSMDE 257


>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
 gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
          Length = 500

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
 gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
          Length = 504

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
 gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
 gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
 gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
 gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
 gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
          Length = 505

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|328793255|ref|XP_003251852.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis
           mellifera]
          Length = 418

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C +     + VMRA+S +YH+ CF C  C + L  G++F LR   LFCR 
Sbjct: 68  VRLFGTKCDKCSECFSKDDYVMRARSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRH 127

Query: 75  DFE 77
           D +
Sbjct: 128 DHD 130


>gi|371573882|gb|AEX38311.1| islet [Mnemiopsis leidyi]
          Length = 321

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 13  RGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC 72
           + F  +G KC RC      ++ VMR + +++HL CF C +C + L  GE+F L    L C
Sbjct: 63  KDFVRFGAKCHRCDQGFSSNDFVMRVRENIFHLSCFRCNMCSRQLVPGEEFALLPEGLIC 122

Query: 73  RQDFEKEMYLMQQSSPSDDMMLDENCRPR------DGRRGPKRPRTILTSAQRRQFKSSF 126
               +++ +   Q +P  +  L E+ +PR       G +   R RT+L   Q R  ++ +
Sbjct: 123 GTHIKQQHH---QQAPLPNEPLPES-KPRSTNTGSSGEQKTTRVRTVLNDRQLRILRTCY 178

Query: 127 EVSPKP 132
             +P+P
Sbjct: 179 NNNPRP 184


>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
          Length = 198

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIXCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSS 87
           L   ++ CR  ++  +  +++++
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAA 196


>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
          Length = 182

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 103 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 162

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++   +L C+ D+E
Sbjct: 163 FYLMEDSRLVCKADYE 178


>gi|340717324|ref|XP_003397134.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Bombus
           terrestris]
 gi|350407611|ref|XP_003488142.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Bombus
           impatiens]
          Length = 458

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C +     + VMRA+S +YH+ CF C  C + L  G++F LR   LFCR 
Sbjct: 108 VRLFGTKCDKCSECFSKDDYVMRARSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRH 167

Query: 75  DFE 77
           D +
Sbjct: 168 DHD 170


>gi|380018327|ref|XP_003693083.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Apis florea]
          Length = 419

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C +     + VMRA+S +YH+ CF C  C + L  G++F LR   LFCR 
Sbjct: 69  VRLFGTKCDKCSECFSKDDYVMRARSKIYHIKCFRCSACMRQLVPGDEFALRQDGLFCRH 128

Query: 75  DFE 77
           D +
Sbjct: 129 DHD 131


>gi|328707559|ref|XP_001944557.2| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
           [Acyrthosiphon pisum]
          Length = 513

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RL+G KC +C       E+VMRA++ VYH+ CF C  C + L  G++F LR   L C+Q
Sbjct: 157 VRLFGTKCDKCNLSFDRTELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCKQ 216

Query: 75  DFE 77
           D +
Sbjct: 217 DHD 219


>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
          Length = 290

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 72  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 131

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++   +L C+ D+E
Sbjct: 132 FYLMEDSRLVCKADYE 147


>gi|322789289|gb|EFZ14609.1| hypothetical protein SINV_08936 [Solenopsis invicta]
          Length = 161

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
          RL+G KC +C      ++ VMRA++ +YH+ CF C  C + L+ G++F LR   LFCR D
Sbjct: 39 RLFGTKCDKCSQCFSKNDYVMRAKTKIYHVECFRCCACMRRLETGDEFALRQDGLFCRHD 98


>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
           domestica]
          Length = 380

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDNLVYCRAHFET---LLQGEYP 177


>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
           domestica]
 gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
           harrisii]
          Length = 388

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDNLVYCRAHFET---LLQGEYP 187


>gi|296194639|ref|XP_002745038.1| PREDICTED: insulin gene enhancer protein ISL-1 [Callithrix jacchus]
          Length = 348

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 18/135 (13%)

Query: 15  FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
            RLYG+KCA        ++ VMRA+S VYH+ CF CV    P   G++F LR   LFCR 
Sbjct: 72  IRLYGIKCAXXSIGFSKNDFVMRARSKVYHIECFRCVAAA-PAHPGDEFALREDGLFCRA 130

Query: 75  DFE-KEMYLMQQSSPSDDMM----LDENCRPRDGRRGPKRP------------RTILTSA 117
           D +  E   +    P   +     L     P   R+   RP            RT+L   
Sbjct: 131 DHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEK 190

Query: 118 QRRQFKSSFEVSPKP 132
           Q    ++ +  +P+P
Sbjct: 191 QLHTLRTCYAANPRP 205


>gi|291230776|ref|XP_002735341.1| PREDICTED: LIM domain only 1-like [Saccoglossus kowalevskii]
          Length = 311

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 10  CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           C     RL+G    CA C   +   EMVMRA+ +VYHL CF C  C      G++F LR+
Sbjct: 99  CKRDYLRLFGTTGYCAACAKVIPAFEMVMRARDNVYHLECFACQQCNHRFCVGDKFYLRN 158

Query: 68  GQLFCRQDFEKEMYL 82
            ++ C +D+E  M L
Sbjct: 159 NKILCEEDYEDAMML 173


>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
           harrisii]
          Length = 380

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDNLVYCRAHFET---LLQGEYP 177


>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
          Length = 378

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDNLVYCRAHFES---LLQGEYP 177


>gi|296210850|ref|XP_002752233.1| PREDICTED: LIM domain only protein 3-like isoform 1 [Callithrix
           jacchus]
          Length = 167

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 83  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 142

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 143 KNNMILCQTDYEEGL 157


>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
          Length = 420

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + VK C+RC   +  +E+VMRA+ HV+H+ CF C  C + L  G+
Sbjct: 103 AKDGEIFCKEDYYRRFAVKRCSRCHQAISANELVMRAREHVFHIGCFTCASCSKALTTGD 162

Query: 62  QFILRSGQLFCRQDFEKEM 80
            F ++   ++CR  +E  M
Sbjct: 163 YFGMKDHLIYCRSHYEHIM 181



 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22  CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81
           CA CG +++    ++ A    +H+ C  C  C  PL        + G++FC++D+ +   
Sbjct: 61  CAGCGGKIIDRYYLL-AVDKQWHINCLKCADCHLPLDSELTCFAKDGEIFCKEDYYRRFA 119

Query: 82  L 82
           +
Sbjct: 120 V 120


>gi|7963882|gb|AAF71368.1|AF258348_1 neuronal specific transcription factor DAT1 [Homo sapiens]
          Length = 125

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
             C  R  RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 41  ACCDCRWERLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 100

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 101 KNNMILCQTDYEEGL 115


>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
 gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
          Length = 378

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDNLVYCRAHFES---LLQGEYP 177


>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
          Length = 378

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 99  IYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMK 158

Query: 67  SGQLFCRQDFEKEMYLMQQSSP 88
              ++CR  FE    L+Q   P
Sbjct: 159 DNLVYCRAHFES---LLQGEYP 177


>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
          Length = 420

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 54  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDAVYHLSCFTCSTCSKTLATGD 113

Query: 62  QFILRSGQLFCRQDFEKEMY 81
            F ++ G ++CR  FE  ++
Sbjct: 114 HFGMKDGLVYCRAHFESLLH 133


>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
 gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
          Length = 211

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           +  V C     + +   CA+C   + P + V RA+  V+HL CF C  C + L  GEQF 
Sbjct: 57  DGEVYCKTDYIKKFKASCAKCSRSISPSDWVRRARDFVFHLACFACDSCGRQLSTGEQFA 116

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKS 124
           +   ++ C+  +   M L+   + S +   D      + +   KR RT  T  Q +  ++
Sbjct: 117 IIDDRVLCKTHY---MELIDDGTTSSEDGCDA---EGNSKNKTKRIRTTFTEEQIQILQA 170

Query: 125 SFEVSPKPCRK------VSTMNSKRAKNILTPNQR 153
           +F++   P  +      ++T  SKR   +   N R
Sbjct: 171 NFQIDSNPDGQDLERIALATGLSKRVTQVWFQNSR 205


>gi|395850545|ref|XP_003797844.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
          Length = 406

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|426225422|ref|XP_004006865.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
          Length = 170

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 86  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 145

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 146 KNNMILCQTDYEEGL 160


>gi|395538520|ref|XP_003771227.1| PREDICTED: LIM domain only protein 3 isoform 2 [Sarcophilus
           harrisii]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|332023208|gb|EGI63464.1| Insulin gene enhancer protein ISL-1 [Acromyrmex echinatior]
          Length = 432

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC +C      ++ VMRA++ +YH+ CF C  C + L+ G++F LR   LFCR D
Sbjct: 85  RLFGTKCDKCSRCFSKNDYVMRAKTKIYHVECFRCCACSRRLETGDEFALRQDGLFCRLD 144

Query: 76  FE 77
            +
Sbjct: 145 HD 146


>gi|343790984|ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens]
 gi|332232844|ref|XP_003265612.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332838730|ref|XP_003313578.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|397491239|ref|XP_003816580.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
 gi|426371876|ref|XP_004052866.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|194377506|dbj|BAG57701.1| unnamed protein product [Homo sapiens]
 gi|221045430|dbj|BAH14392.1| unnamed protein product [Homo sapiens]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|403286719|ref|XP_003934625.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
           boliviensis]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|345792348|ref|XP_866550.2| PREDICTED: LIM domain only protein 3 isoform 6 [Canis lupus
           familiaris]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
           gallopavo]
          Length = 338

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 54  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 113

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 114 HFGMKDNLVYCRAHFES---LLQGEYP 137


>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
 gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
 gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
           LH-2; Short=LIM homeobox protein 2
 gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
 gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
 gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
 gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
          Length = 406

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
          Length = 389

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 78  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 137

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 138 HFGMKDSLVYCRLHFEA---LLQGEYPA 162


>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
          Length = 385

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 78  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 137

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 138 HFGMKDSLVYCRLHFEA---LLQGEYPA 162


>gi|301766676|ref|XP_002918759.1| PREDICTED: LIM domain only protein 3-like [Ailuropoda melanoleuca]
          Length = 163

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 79  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 138

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 139 KNNMILCQTDYEEGL 153


>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
 gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
          Length = 173

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
           RL+G KC++C       + VMRA+ H+YHL CF C  C + L  G++F LR   LFCR D
Sbjct: 83  RLFGAKCSKCQQGFSRTDFVMRARQHIYHLDCFRCQACARQLIPGDEFALRDDGLFCRAD 142


>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
           9
          Length = 397

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 113 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGD 172

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 173 HFGMKDNLVYCRAHFES---LLQGEYP 196


>gi|326912347|ref|XP_003202514.1| PREDICTED: hypothetical protein LOC100545049, partial [Meleagris
           gallopavo]
          Length = 391

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 15  FRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC 72
            RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L++  + C
Sbjct: 314 LRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 373

Query: 73  RQDFEKEM 80
           + D+E+ +
Sbjct: 374 QTDYEEGL 381


>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
 gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
 gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
          Length = 389

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 78  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 137

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 138 HFGMKDSLVYCRLHFEA---LLQGEYPA 162


>gi|158287501|ref|XP_309513.3| AGAP011134-PA [Anopheles gambiae str. PEST]
 gi|157019681|gb|EAA05265.3| AGAP011134-PA [Anopheles gambiae str. PEST]
          Length = 501

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + +  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQISTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|268567057|ref|XP_002639879.1| C. briggsae CBR-LIN-11 protein [Caenorhabditis briggsae]
          Length = 411

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 34/165 (20%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C  +L   ++V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 115 SKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 174

Query: 63  FILRSGQLFCRQDFEKEMYLMQQSSPS-----------------------------DDMM 93
             +  G   C+ DF+      + S+P+                             DD+ 
Sbjct: 175 LYIMEGNRMCQNDFQT---ATKTSTPTSMHRPISNGSECNSDIEEDNVDACDEGGLDDVD 231

Query: 94  LDENCRPRDGRRGPKR--PRTILTSAQRRQFKSSFEVSPKPCRKV 136
            D      D     KR  PRT + + Q    K++F  +PKP R +
Sbjct: 232 GDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHI 276


>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
           boliviensis]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
 gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
 gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
 gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
           gorilla]
 gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
           LH-2; Short=LIM homeobox protein 2
 gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
 gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
 gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
 gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
 gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
           leucogenys]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|432860305|ref|XP_004069493.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
          Length = 155

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 3   SHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
           + ++ + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G
Sbjct: 66  TRSNLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVG 125

Query: 61  EQFILRSGQLFCRQDFEK 78
           ++F L++  + C+ D+EK
Sbjct: 126 DKFFLKNNMILCQLDYEK 143


>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
          Length = 423

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 154 HFGMKDSLVYCRLHFEA---LLQGEYPA 178


>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
          Length = 417

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 116 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGD 175

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 176 HFGMKDSLVYCRLHFE 191


>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
 gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
          Length = 400

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 96  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 155

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 156 HFGMKDNLVYCRLHFE 171


>gi|270004863|gb|EFA01311.1| arrowhead [Tribolium castaneum]
          Length = 349

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     + +G KC+ C   +   + V +A+ HVYHL CF C  C + L  GE+F L  
Sbjct: 116 IYCKADYAKSFGAKCSVCSRGISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHE 175

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
            ++ C+  + +   L   ++ SDD    E       +   KR RT  T  Q +  +++F+
Sbjct: 176 DRVLCKAHYLET--LDGGTTSSDDGCDAEGYH----KNKAKRVRTTFTEEQLQVLQANFQ 229

Query: 128 VSPKP----CRKVSTMN--SKRAKNILTPNQR 153
           +   P      +++ +   SKR   +   N R
Sbjct: 230 LDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 261


>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
          Length = 198

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSS 87
           L   ++ CR  ++  +  +++++
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAA 196


>gi|50924940|gb|AAH79734.1| XLMO1 protein [Xenopus laevis]
          Length = 145

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 61  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL 120

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 121 KNNMILCQTDYEEGL 135


>gi|432942706|ref|XP_004083043.1| PREDICTED: LIM domain only protein 3-like [Oryzias latipes]
          Length = 156

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
           melanoleuca]
 gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
           familiaris]
 gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
 gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
 gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
 gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
          Length = 406

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
          Length = 198

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSS 87
           L   ++ CR  ++  +  +++++
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAA 196


>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
          Length = 396

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFET---LIQGDFPT 179


>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
          Length = 380

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 99  IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMK 158

Query: 67  SGQLFCRQDFE 77
              ++CR  FE
Sbjct: 159 DSLVYCRLHFE 169


>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
          Length = 396

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFET---LIQGDFPT 179


>gi|318052393|ref|NP_001187844.1| LIM domain only protein 3 [Ictalurus punctatus]
 gi|308324124|gb|ADO29197.1| lim domain only protein 3 [Ictalurus punctatus]
          Length = 156

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
          Length = 427

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 126 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 185

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 186 HFGMKDSLVYCRLHFET---LIQGDFPT 210


>gi|348569402|ref|XP_003470487.1| PREDICTED: LIM domain only protein 3-like [Cavia porcellus]
          Length = 156

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|338725822|ref|XP_003365206.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
           [Equus caballus]
          Length = 168

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 84  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 143

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 144 KNNMILCQTDYEEGL 158


>gi|327277798|ref|XP_003223650.1| PREDICTED: LIM/homeobox protein Lhx9-like, partial [Anolis
          carolinensis]
          Length = 279

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
          +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++   ++CR  FE   
Sbjct: 6  RCARCHLGISASEMVMRARDSVYHLSCFTCTTCHKTLTTGDHFGMKDSVVYCRAHFES-- 63

Query: 81 YLMQQ 85
           L+QQ
Sbjct: 64 -LLQQ 67


>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
           guttata]
          Length = 399

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 155 HFGMKDNLVYCRLHFE 170


>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
 gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
          Length = 415

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 41/169 (24%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C  +L   ++V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 118 SKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 177

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPS------------------------DDMMLDE- 96
            +I+   +  C+ DF+      + S+P+                        DD+ LD+ 
Sbjct: 178 LYIMEGNRFMCQNDFQTA---TKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDG 234

Query: 97  --NCRPRDG-------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
             +C   +        RRG   PRT + + Q    K++F  +PKP R +
Sbjct: 235 EGDCGKDNSDDSNSAKRRG---PRTTIKAKQLETLKNAFAATPKPTRHI 280


>gi|195354923|ref|XP_002043945.1| GM13699 [Drosophila sechellia]
 gi|194129190|gb|EDW51233.1| GM13699 [Drosophila sechellia]
          Length = 424

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S  S + C    FR YG KC+ CG  + P ++V + +  V+HL CF C IC + L  GEQ
Sbjct: 67  SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141


>gi|343790981|ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens]
 gi|224096300|ref|XP_002196668.1| PREDICTED: LIM domain only protein 3 isoform 2 [Taeniopygia
           guttata]
 gi|296210852|ref|XP_002752234.1| PREDICTED: LIM domain only protein 3-like isoform 2 [Callithrix
           jacchus]
 gi|332232836|ref|XP_003265608.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332838722|ref|XP_520773.3| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|345792350|ref|XP_003433617.1| PREDICTED: LIM domain only protein 3 [Canis lupus familiaris]
 gi|363728014|ref|XP_416410.3| PREDICTED: LIM domain only protein 3 [Gallus gallus]
 gi|395538518|ref|XP_003771226.1| PREDICTED: LIM domain only protein 3 isoform 1 [Sarcophilus
           harrisii]
 gi|397491237|ref|XP_003816579.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
 gi|403286717|ref|XP_003934624.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
           boliviensis]
 gi|410963922|ref|XP_003988507.1| PREDICTED: LIM domain only protein 3 isoform 1 [Felis catus]
 gi|426225414|ref|XP_004006861.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
 gi|426371864|ref|XP_004052860.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|62148930|dbj|BAD93349.1| hypothetical protein [Homo sapiens]
 gi|355564057|gb|EHH20557.1| hypothetical protein EGK_03435 [Macaca mulatta]
 gi|355785943|gb|EHH66126.1| hypothetical protein EGM_03045 [Macaca fascicularis]
          Length = 156

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
          Length = 378

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 99  IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMK 158

Query: 67  SGQLFCRQDFE 77
              ++CR  FE
Sbjct: 159 DSLVYCRLHFE 169


>gi|395850543|ref|XP_003797843.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
          Length = 156

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
 gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
          Length = 198

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSS 87
           L   ++ CR  ++  +  +++++
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAA 196


>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
          Length = 442

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 33/193 (17%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPR---DGRRGPKR---PRTILT 115
            F ++   ++CR  FE               +L    RPR     ++ P R   P T+  
Sbjct: 155 HFGMKDSLVYCRLHFEA--------------LLQGEYRPRVLGWAQQEPTRWVCPTTMAW 200

Query: 116 SAQRRQFKSSFEV-SPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPC--RKVGV 172
           +  RR  + S    +P P  + +T+ ++          RR    S  +   P   R+  +
Sbjct: 201 ALCRRGDRGSARAQAPGPIWRPTTLGAQ---------PRRPLAKSVALGDSPAEERRRFI 251

Query: 173 HGHYLSLGMSLQD 185
            G ++  G+ + +
Sbjct: 252 TGRWVKGGIGVWE 264


>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
          Length = 378

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCFTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
          Length = 404

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 154 HFGMKDSLVYCRLHFEA---LLQGEYPA 178


>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
          Length = 404

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
          Length = 506

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 227 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMK 286

Query: 67  SGQLFCRQDFE 77
              ++CR  FE
Sbjct: 287 DSLVYCRLHFE 297


>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
 gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
          Length = 383

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 41/169 (24%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C  +L   ++V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 103 SKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 162

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPS------------------------DDMMLDE- 96
            +I+   +  C+ DF+      + S+P+                        DD+ LD+ 
Sbjct: 163 LYIMEGNRFMCQNDFQT---ATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDG 219

Query: 97  --NCRPRDG-------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
             +C   +        RRG   PRT + + Q    K++F  +PKP R +
Sbjct: 220 EGDCGKDNSDDSNSAKRRG---PRTTIKAKQLETLKNAFAATPKPTRHI 265


>gi|348536393|ref|XP_003455681.1| PREDICTED: LIM domain only protein 3-like [Oreochromis niloticus]
          Length = 156

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 404

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 154 HFGMKDSLVYCRLHFEA---LLQGEYPA 178


>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
 gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
 gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
 gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
 gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
 gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
          Length = 383

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 41/169 (24%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C  +L   ++V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 103 SKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 162

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPS------------------------DDMMLDE- 96
            +I+   +  C+ DF+      + S+P+                        DD+ LD+ 
Sbjct: 163 LYIMEGNRFMCQNDFQT---ATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDG 219

Query: 97  --NCRPRDG-------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
             +C   +        RRG   PRT + + Q    K++F  +PKP R +
Sbjct: 220 EGDCGKDNSDDSNSAKRRG---PRTTIKAKQLETLKNAFAATPKPTRHI 265


>gi|449271287|gb|EMC81748.1| LIM domain only protein 3, partial [Columba livia]
          Length = 147

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 63  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 122

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 123 KNNMILCQTDYEEGL 137


>gi|21754884|dbj|BAC04582.1| unnamed protein product [Homo sapiens]
          Length = 145

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 61  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 120

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 121 KNNMILCQTDYEEGL 135


>gi|147902408|ref|NP_001084116.1| LIM domain only protein 3 [Xenopus laevis]
 gi|82225303|sp|Q9YH16.1|LMO3_XENLA RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
           Full=LIM domain only protein 1; Short=LMO-1; Short=xLMO1
 gi|4100164|gb|AAD00763.1| transcription factor XLMO1 [Xenopus laevis]
          Length = 156

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 72  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL 131

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 132 KNNMILCQTDYEEGL 146


>gi|21361802|ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens]
 gi|46402195|ref|NP_997105.1| LIM domain only protein 3 [Mus musculus]
 gi|47778935|ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
 gi|114052438|ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus]
 gi|162951801|ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]
 gi|205830463|ref|NP_001127650.2| LIM domain only protein 3 isoform 2 [Pongo abelii]
 gi|205830488|ref|NP_001125415.1| LIM domain only protein 3 isoform 1 [Pongo abelii]
 gi|343790975|ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
 gi|343790979|ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
 gi|388453193|ref|NP_001253235.1| LIM domain only protein 3 [Macaca mulatta]
 gi|73997103|ref|XP_866536.1| PREDICTED: LIM domain only protein 3 isoform 5 [Canis lupus
           familiaris]
 gi|224096294|ref|XP_002196644.1| PREDICTED: LIM domain only protein 3 isoform 1 [Taeniopygia
           guttata]
 gi|224096298|ref|XP_002196694.1| PREDICTED: LIM domain only protein 3 isoform 3 [Taeniopygia
           guttata]
 gi|291392560|ref|XP_002712669.1| PREDICTED: LIM domain only 3 [Oryctolagus cuniculus]
 gi|296210858|ref|XP_002752237.1| PREDICTED: LIM domain only protein 3-like isoform 5 [Callithrix
           jacchus]
 gi|296210864|ref|XP_002752240.1| PREDICTED: LIM domain only protein 3-like isoform 8 [Callithrix
           jacchus]
 gi|327282546|ref|XP_003226003.1| PREDICTED: LIM domain only protein 3-like [Anolis carolinensis]
 gi|332232834|ref|XP_003265607.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232838|ref|XP_003265609.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232840|ref|XP_003265610.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232842|ref|XP_003265611.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232846|ref|XP_003265613.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232848|ref|XP_003265614.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332232850|ref|XP_003265615.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|332838720|ref|XP_003313574.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838724|ref|XP_003313575.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838726|ref|XP_003313576.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838728|ref|XP_003313577.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838732|ref|XP_003313579.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838734|ref|XP_003339274.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|332838736|ref|XP_003313580.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|334348292|ref|XP_001366731.2| PREDICTED: LIM domain only protein 3-like [Monodelphis domestica]
 gi|354477495|ref|XP_003500955.1| PREDICTED: LIM domain only protein 3-like [Cricetulus griseus]
 gi|392347749|ref|XP_003749911.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
 gi|402885348|ref|XP_003906123.1| PREDICTED: LIM domain only protein 3 [Papio anubis]
 gi|410046363|ref|XP_003952174.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|410046365|ref|XP_003952175.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
 gi|410963924|ref|XP_003988508.1| PREDICTED: LIM domain only protein 3 isoform 2 [Felis catus]
 gi|410963926|ref|XP_003988509.1| PREDICTED: LIM domain only protein 3 isoform 3 [Felis catus]
 gi|426225412|ref|XP_004006860.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
 gi|426225416|ref|XP_004006862.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
 gi|426225418|ref|XP_004006863.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
 gi|426225420|ref|XP_004006864.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
 gi|426371866|ref|XP_004052861.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371868|ref|XP_004052862.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371870|ref|XP_004052863.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371872|ref|XP_004052864.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371874|ref|XP_004052865.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371878|ref|XP_004052867.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371880|ref|XP_004052868.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371882|ref|XP_004052869.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|426371884|ref|XP_004052870.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
 gi|441669886|ref|XP_004092147.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|441669892|ref|XP_004092148.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
 gi|449482200|ref|XP_004174330.1| PREDICTED: LIM domain only protein 3 [Taeniopygia guttata]
 gi|34098514|sp|Q8BZL8.1|LMO3_MOUSE RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
           Full=Neuronal-specific transcription factor DAT1
 gi|34098603|sp|Q8TAP4.1|LMO3_HUMAN RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
           Full=Neuronal-specific transcription factor DAT1;
           AltName: Full=Rhombotin-3
 gi|75070808|sp|Q5RBW7.1|LMO3_PONAB RecName: Full=LIM domain only protein 3; Short=LMO-3
 gi|108860786|sp|Q2KIA3.1|LMO3_BOVIN RecName: Full=LIM domain only protein 3; Short=LMO-3
 gi|20070930|gb|AAH26311.1| LIM domain only 3 (rhombotin-like 2) [Homo sapiens]
 gi|26329757|dbj|BAC28617.1| unnamed protein product [Mus musculus]
 gi|34784567|gb|AAH57086.1| Lmo3 protein [Mus musculus]
 gi|55727608|emb|CAH90559.1| hypothetical protein [Pongo abelii]
 gi|55727981|emb|CAH90743.1| hypothetical protein [Pongo abelii]
 gi|55730077|emb|CAH91763.1| hypothetical protein [Pongo abelii]
 gi|55730911|emb|CAH92174.1| hypothetical protein [Pongo abelii]
 gi|55733334|emb|CAH93349.1| hypothetical protein [Pongo abelii]
 gi|55733457|emb|CAH93407.1| hypothetical protein [Pongo abelii]
 gi|62148932|dbj|BAD93350.1| hypothetical protein [Homo sapiens]
 gi|71052099|gb|AAH50085.1| LMO3 protein [Homo sapiens]
 gi|86438236|gb|AAI12713.1| LIM domain only 3 (rhombotin-like 2) [Bos taurus]
 gi|119616777|gb|EAW96371.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
 gi|119616778|gb|EAW96372.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
 gi|119616781|gb|EAW96375.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
 gi|119616782|gb|EAW96376.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
 gi|119616783|gb|EAW96377.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
 gi|160858220|dbj|BAF93843.1| LIM domain only 3 [Sus scrofa]
 gi|167773937|gb|ABZ92403.1| LIM domain only 3 (rhombotin-like 2) [synthetic construct]
 gi|168279025|dbj|BAG11392.1| LIM domain only protein 3 [synthetic construct]
 gi|296487271|tpg|DAA29384.1| TPA: LIM domain only protein 3 [Bos taurus]
 gi|380783249|gb|AFE63500.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
 gi|380783251|gb|AFE63501.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
          Length = 145

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 61  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 120

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 121 KNNMILCQTDYEEGL 135


>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
          Length = 365

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 54  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 113

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 114 HFGMKDSLVYCRLHFEA---LLQGEYPT 138


>gi|295656539|gb|ADG26732.1| Lhx1/5 [Platynereis dumerilii]
          Length = 291

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    + C    FR +G KC  C   + P+++V RA++ V+HL CF C++C + L  GE+
Sbjct: 44  SREGKLYCRDDFFRRFGTKCGGCSQGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEE 103

Query: 63  -FILRSGQLFCRQDF 76
            ++L   +  C++D+
Sbjct: 104 LYVLDENKFICKEDY 118


>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
          Length = 388

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
 gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
 gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
 gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
 gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
 gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
 gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
 gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
          Length = 383

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 41/169 (24%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S +  + C     R YG +CA C  +L   ++V RA+  V+H+ CF C +C + L  G+Q
Sbjct: 103 SKDGLILCKTDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 162

Query: 63  -FILRSGQLFCRQDFEKEMYLMQQSSPS------------------------DDMMLDE- 96
            +I+   +  C+ DF+      + S+P+                        DD+ LD+ 
Sbjct: 163 LYIMEGNRFMCQNDFQT---ATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDG 219

Query: 97  --NCRPRDG-------RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
             +C   +        RRG   PRT + + Q    K++F  +PKP R +
Sbjct: 220 EGDCGKDNSDDSNSAKRRG---PRTTIKAKQLETLKNAFAATPKPTRHI 265


>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
          Length = 404

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 154 HFGMKDSLVYCRLHFEA---LLQGEYPA 178


>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
           9
 gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
           rerio]
 gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
 gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
 gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
          Length = 396

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 113 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGD 172

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 173 HFGMKDNLVYCRVHFE 188


>gi|344251414|gb|EGW07518.1| LIM domain only protein 3 [Cricetulus griseus]
          Length = 149

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 65  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 124

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 125 KNNMILCQTDYEEGL 139


>gi|66472234|ref|NP_001018575.1| LIM domain only protein 3 [Danio rerio]
 gi|82228853|sp|Q503U0.1|LMO3_DANRE RecName: Full=LIM domain only protein 3; Short=LMO-3
 gi|63101819|gb|AAH95186.1| LIM domain only 3 [Danio rerio]
          Length = 145

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 61  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL 120

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 121 KNNMILCQTDYEEGL 135


>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
          Length = 408

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 155 HFGMKDSLVYCRLHFE 170


>gi|193634208|ref|XP_001949623.1| PREDICTED: LIM domain only protein 3-like [Acyrthosiphon pisum]
          Length = 250

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 8   VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C    FR++G K  CA C   +   EMVMRA+S+VYHL CF C  C      G++F L
Sbjct: 81  ILCKKDYFRMFGNKGMCAACFKDIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYL 140

Query: 66  RSGQLFCRQDFEKEMYLMQQS 86
              ++ C  DFE+ M     +
Sbjct: 141 CENKILCEYDFEERMVFANMA 161


>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
          Length = 365

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 54  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 113

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 114 HFGMKDSLVYCRLHFEA---LLQGEYPA 138


>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
          Length = 417

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 116 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGD 175

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 176 HFGMKDSLVYCRLHFE 191


>gi|281352404|gb|EFB27988.1| hypothetical protein PANDA_007272 [Ailuropoda melanoleuca]
          Length = 149

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 65  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 124

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 125 KNNMILCQTDYEEGL 139


>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
           porcellus]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
          Length = 365

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 54  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 113

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 114 HFGMKDSLVYCRLHFEA---LLQGEYPA 138


>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
          Length = 475

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 168 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 227

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 228 HFGMKDSLVYCRLHFEA---LLQGEYPA 252


>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
           niloticus]
          Length = 399

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 115 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGD 174

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 175 HFGMKDSLVYCRLHFE 190


>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
           (Silurana) tropicalis]
          Length = 398

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 114 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGD 173

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 174 HFGMKENLVYCRIHFE 189


>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
 gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
 gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
 gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
 gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
 gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
 gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
 gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
 gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
           boliviensis]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
           guttata]
          Length = 436

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 132 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 191

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 192 HFGMKDNLVYCRLHFE 207


>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
           cuniculus]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
           Binding Domain Of Isl1
 gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
           Binding Domain Of Isl1
          Length = 169

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
           S    V C    F+ +G KCA C   + P ++V RAQ  VYHL CF CV+C + L  G++
Sbjct: 49  SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 108

Query: 63  F-ILRSGQLFCRQDFE 77
           F ++   +L C+ D+E
Sbjct: 109 FYLMEDSRLVCKADYE 124


>gi|322778971|gb|EFZ09382.1| hypothetical protein SINV_12440 [Solenopsis invicta]
          Length = 322

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 16 RLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
          R++G   +CARC   +L  E+VMRA+  V+H+ CF C  C   L KG+ F +R G + CR
Sbjct: 1  RMFGSMKRCARCQAAILASELVMRARELVFHVRCFSCAACAVLLTKGDHFGMRDGAVLCR 60

Query: 74 QDFE 77
            +E
Sbjct: 61 LHYE 64


>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
          Length = 388

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|47230457|emb|CAF99650.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 169

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 15  FRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFC 72
           FRL+G    CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L++  + C
Sbjct: 92  FRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 151

Query: 73  RQDFEK 78
           + D+E+
Sbjct: 152 QMDYEE 157


>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
          Length = 373

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
            F ++   ++CR  FE    L+Q   P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179


>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
           LH-2; Short=LIM homeobox protein 2
          Length = 426

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  SKDGSIYCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRLHFEA---LLQGEYP 177


>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
          Length = 239

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 5   NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
           N  + C    F  +G KCARCG ++   + V RA+ + YHL CF C  C + L  GE+F 
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173

Query: 65  LRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDE-NCR 99
           L   ++ CR  ++  +  +++++ +  +   + +CR
Sbjct: 174 LVEEKVLCRIHYDTMIENLKRAAENGQVQCGQVHCR 209


>gi|321469905|gb|EFX80883.1| hypothetical protein DAPPUDRAFT_50562 [Daphnia pulex]
          Length = 315

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCRQ 74
           RL+G KC +CG      + VMRA+S +YH+ CF C +C + L  G++F LR  G LFC+ 
Sbjct: 57  RLFGAKCDKCGLGFSRSDFVMRAKSKIYHIECFRCALCQRQLVPGDEFALRDDGNLFCKD 116

Query: 75  DFEK 78
           D ++
Sbjct: 117 DHDQ 120


>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
          Length = 366

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 82  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 141

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 142 HFGMKDSLVYCRAHFET---LLQGEYP 165


>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
           familiaris]
          Length = 380

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
          Length = 378

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
 gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
           9
 gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
          Length = 388

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|55852865|gb|AAV67806.1| LIM homeobox protein 4 [Homo sapiens]
 gi|55852886|gb|AAV67807.1| LIM homeobox protein 4 [Homo sapiens]
 gi|229575960|gb|ACQ82464.1| LHX4 [Bos taurus]
 gi|229575962|gb|ACQ82465.1| LHX4 [Bos taurus]
 gi|229575964|gb|ACQ82466.1| LHX4 [Bos taurus]
 gi|229575966|gb|ACQ82467.1| LHX4 [Bos taurus]
 gi|229575968|gb|ACQ82468.1| LHX4 [Bos taurus]
          Length = 67

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILRSGQLFCRQDF 76
          +G KC  C   + P ++V +AQ  VYHL CF C+IC + L  G++F ++  G+L C++D+
Sbjct: 2  FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 61

Query: 77 E 77
          E
Sbjct: 62 E 62


>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
          Length = 378

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 396

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           S +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 95  SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGD 154

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 155 HFGMKDSLVYCRLHFE 170


>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
 gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
 gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
          Length = 378

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
          Length = 397

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 113 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 172

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 173 HFGMKDSLVYCRAHFET---LLQGEYP 196


>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
          Length = 380

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 154 HFGMKDSLVYCRAHFE 169


>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
          Length = 388

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFE 77
            F ++   ++CR  FE
Sbjct: 164 HFGMKDSLVYCRAHFE 179


>gi|393905176|gb|EFO23802.2| hypothetical protein LOAG_04687 [Loa loa]
          Length = 205

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)

Query: 18  YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
           +G KC+ C   +   + V RA++ VYHL CF C  C + L  GE+F L+  +L C+Q + 
Sbjct: 11  FGTKCSSCQRLIHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHYM 70

Query: 78  KEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKP----C 133
           +              +++  C  +  +   KR RT     Q    ++ F++   P     
Sbjct: 71  E--------------LIEGECGQQKAK--TKRVRTTFAEEQLAVLQTHFQIDSNPDGADL 114

Query: 134 RKVSTMN--SKRAKNILTPNQR 153
            +++TM   SKR   +   N R
Sbjct: 115 ERIATMTGLSKRVTQVWFQNSR 136


>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
          Length = 447

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 109 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 168

Query: 67  SGQLFCRQDFEKEMYLMQQSSP 88
              ++CR  FE    L+Q   P
Sbjct: 169 DSLVYCRAHFET---LLQGEYP 187


>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
           domestica]
 gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
           harrisii]
          Length = 321

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 8   VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
           + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+ F ++
Sbjct: 109 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMK 168

Query: 67  SGQLFCRQDFEKEMYLMQQSSP 88
              ++CR  FE    L+Q   P
Sbjct: 169 DNLVYCRAHFET---LLQGEYP 187


>gi|157119548|ref|XP_001659418.1| lim homeobox protein [Aedes aegypti]
 gi|108875286|gb|EAT39511.1| AAEL008685-PA [Aedes aegypti]
          Length = 345

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query: 21  KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
           +CARCG  +   E+VMRA+  ++H+ CF C IC Q L+ G+   +R G++FC + ++ ++
Sbjct: 77  RCARCGSGISASELVMRAKDLIFHVNCFSCTICGQLLRGGDTAGIRDGRIFCGEHYDTDV 136


>gi|21706633|gb|AAH34128.1| Lmo3 protein, partial [Mus musculus]
          Length = 112

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 8   VSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
           + C     RL+GV   CA C   +   EMVMRA+ +VYHL CF C +C Q    G++F L
Sbjct: 28  ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL 87

Query: 66  RSGQLFCRQDFEKEM 80
           ++  + C+ D+E+ +
Sbjct: 88  KNNMILCQTDYEEGL 102


>gi|91082483|ref|XP_972328.1| PREDICTED: similar to GA19074-PA [Tribolium castaneum]
 gi|270007532|gb|EFA03980.1| hypothetical protein TcasGA2_TC014129 [Tribolium castaneum]
          Length = 341

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 16  RLYG--VKCARCGDRLLPHEMVMR----------AQSHVYHLPCFVCVICCQPLQKGEQF 63
           RL+G    C+ CG  +   E VMR          A  HV+HL CFVC  C  PL +G+++
Sbjct: 243 RLFGNSGACSACGQMIPASEFVMRSGGPSPQQPGAPLHVFHLKCFVCSKCGAPLVQGDRY 302

Query: 64  ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGR 104
            + SG L C QD+ K   L++ S+ +  +   +  RPR  R
Sbjct: 303 YMLSGSLVCEQDWHK---LLKSSAATPTVRKGKVGRPRRSR 340


>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
          Length = 380

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 94  AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 153

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 154 HFGMKDSLVYCRAHFET---LLQGEYP 177


>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
 gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
           leucogenys]
          Length = 399

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 113 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 172

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 173 HFGMKDSLVYCRAHFET---LLQGEYP 196


>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
          Length = 388

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 104 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 163

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 164 HFGMKDSLVYCRAHFET---LLQGEYP 187


>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
          Length = 346

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 8   VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
           + C     R +G  C++C   +     V +A+ HVYHL CF C  C + L  GE+F L  
Sbjct: 108 IYCRQDYARSFGTVCSKCSKGISASHWVRKARDHVYHLACFRCDACDRQLNTGEEFALHE 167

Query: 68  GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFE 127
           G++ C     K  YL      +       +      +   KR RT  T  Q +  +++F+
Sbjct: 168 GRVLC-----KPHYLDIVDGGTTSSSEGGDSESYHSKNKAKRVRTTFTEEQLQVLQANFQ 222

Query: 128 VSPKP----CRKVSTMN--SKRAKNILTPNQRRQFK 157
           +   P      +++ +   SKR   +   N R + K
Sbjct: 223 LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 258


>gi|195084069|ref|XP_001997398.1| GH23605 [Drosophila grimshawi]
 gi|193905450|gb|EDW04317.1| GH23605 [Drosophila grimshawi]
          Length = 203

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 16  RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCRQ 74
           RL+G KC +CG+    ++ VMRA++ ++H+ CF C  C + L  G++F LR +G L+C++
Sbjct: 94  RLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKE 153

Query: 75  D 75
           D
Sbjct: 154 D 154


>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
           boliviensis]
          Length = 399

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 113 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 172

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 173 HFGMKDSLVYCRAHFET---LLQGEYP 196


>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
          Length = 479

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 3   SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
           + +  + C    +R + V +CARC   +   EMVMRA+  VYHL CF C  C + L  G+
Sbjct: 195 AKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGD 254

Query: 62  QFILRSGQLFCRQDFEKEMYLMQQSSP 88
            F ++   ++CR  FE    L+Q   P
Sbjct: 255 HFGMKDSLVYCRAHFET---LLQGEYP 278


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,140,981,856
Number of Sequences: 23463169
Number of extensions: 163307450
Number of successful extensions: 592139
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 1460
Number of HSP's that attempted gapping in prelim test: 585005
Number of HSP's gapped (non-prelim): 7516
length of query: 267
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 127
effective length of database: 9,074,351,707
effective search space: 1152442666789
effective search space used: 1152442666789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)