Query psy10849
Match_columns 267
No_of_seqs 369 out of 2173
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:01:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rgt_A Fusion of LIM/homeobox 99.9 2.5E-23 8.4E-28 172.5 0.3 116 2-135 48-164 (169)
2 2ehe_A Four and A half LIM dom 99.8 6.1E-20 2.1E-24 134.1 4.5 77 5-82 1-77 (82)
3 1x63_A Skeletal muscle LIM-pro 99.8 2.6E-19 9E-24 130.6 7.3 77 5-82 1-77 (82)
4 2egq_A FHL1 protein; LIM domai 99.8 5.3E-19 1.8E-23 127.5 6.5 74 5-79 1-77 (77)
5 2cuq_A Four and A half LIM dom 99.8 5.1E-19 1.7E-23 128.5 6.4 75 5-82 1-75 (80)
6 1x3h_A Leupaxin; paxillin fami 99.8 8.5E-19 2.9E-23 127.3 6.3 75 5-82 1-75 (80)
7 1x6a_A LIMK-2, LIM domain kina 99.8 6.2E-19 2.1E-23 128.4 5.5 76 5-82 1-77 (81)
8 1rut_X Flinc4, fusion protein 99.7 2.1E-19 7.3E-24 151.3 1.3 81 2-82 50-132 (188)
9 2xjy_A Rhombotin-2; oncoprotei 99.7 1.7E-18 5.7E-23 137.2 5.7 81 2-82 47-129 (131)
10 2dlo_A Thyroid receptor-intera 99.7 3.9E-18 1.3E-22 124.2 6.1 74 5-82 2-76 (81)
11 2dms_A Homeobox protein OTX2; 99.7 1.9E-18 6.4E-23 125.9 4.2 60 104-163 4-69 (80)
12 2dmt_A Homeobox protein BARH-l 99.7 1.8E-18 6.2E-23 126.0 3.0 60 102-161 12-77 (80)
13 2cra_A Homeobox protein HOX-B1 99.7 2E-18 6.7E-23 122.6 2.6 58 104-161 4-67 (70)
14 1wh5_A ZF-HD homeobox family p 99.7 2E-18 6.9E-23 125.7 2.3 56 103-158 13-78 (80)
15 2dmq_A LIM/homeobox protein LH 99.7 5.9E-18 2E-22 123.2 4.4 59 105-163 5-69 (80)
16 2cue_A Paired box protein PAX6 99.7 2.6E-18 9.1E-23 125.1 2.4 59 105-163 5-69 (80)
17 2kt0_A Nanog, homeobox protein 99.7 5.7E-18 1.9E-22 124.4 4.1 60 103-162 18-83 (84)
18 1nk2_P Homeobox protein VND; h 99.7 6E-18 2.1E-22 122.3 3.9 61 103-163 5-71 (77)
19 2da2_A Alpha-fetoprotein enhan 99.7 3.5E-18 1.2E-22 121.3 2.4 59 104-162 4-68 (70)
20 1wh7_A ZF-HD homeobox family p 99.7 2.9E-18 1E-22 124.8 2.0 57 101-158 11-78 (80)
21 2da1_A Alpha-fetoprotein enhan 99.7 3.1E-18 1.1E-22 121.5 2.1 59 104-162 4-68 (70)
22 2djn_A Homeobox protein DLX-5; 99.7 3.8E-18 1.3E-22 121.1 2.4 58 104-161 4-67 (70)
23 2dmu_A Homeobox protein goosec 99.7 4.7E-18 1.6E-22 120.6 2.9 57 105-161 5-67 (70)
24 1ahd_P Antennapedia protein mu 99.7 4.6E-18 1.6E-22 120.1 2.0 57 107-163 2-64 (68)
25 2da4_A Hypothetical protein DK 99.7 4E-18 1.4E-22 124.1 1.6 58 103-160 4-71 (80)
26 1puf_A HOX-1.7, homeobox prote 99.7 6.6E-18 2.2E-22 122.1 2.7 60 104-163 10-75 (77)
27 2xqn_T Testin, TESS; metal-bin 99.7 1.3E-17 4.6E-22 131.2 4.6 78 2-80 46-125 (126)
28 2l7z_A Homeobox protein HOX-A1 99.7 1.2E-17 4.1E-22 119.5 3.6 59 104-162 4-68 (73)
29 1v6g_A Actin binding LIM prote 99.7 2.7E-17 9.2E-22 119.7 5.4 74 6-81 2-75 (81)
30 2vi6_A Homeobox protein nanog; 99.7 4.9E-18 1.7E-22 117.7 1.2 54 106-159 2-61 (62)
31 1zq3_P PRD-4, homeotic bicoid 99.7 1E-17 3.6E-22 118.2 2.8 57 107-163 2-64 (68)
32 2h1k_A IPF-1, pancreatic and d 99.7 6.3E-18 2.2E-22 117.5 1.6 54 107-160 3-62 (63)
33 2da3_A Alpha-fetoprotein enhan 99.7 5.4E-18 1.9E-22 123.3 1.3 59 103-161 13-77 (80)
34 2hdd_A Protein (engrailed home 99.7 6.2E-18 2.1E-22 116.8 1.3 52 107-158 3-60 (61)
35 2e1o_A Homeobox protein PRH; D 99.7 1.3E-17 4.3E-22 118.4 2.9 57 105-161 5-67 (70)
36 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-17 3.8E-22 114.3 1.7 52 108-159 1-58 (58)
37 1yz8_P Pituitary homeobox 2; D 99.7 1.1E-17 3.9E-22 118.0 1.8 57 106-162 2-64 (68)
38 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-17 3.7E-22 117.4 1.5 55 106-160 2-62 (66)
39 3a01_A Homeodomain-containing 99.7 2.2E-17 7.5E-22 123.6 3.1 60 104-163 14-79 (93)
40 1b8i_A Ultrabithorax, protein 99.7 1.2E-17 4.1E-22 121.9 1.3 58 104-161 17-80 (81)
41 2r5y_A Homeotic protein sex co 99.7 1.3E-17 4.5E-22 123.6 1.5 57 104-160 25-87 (88)
42 1fjl_A Paired protein; DNA-bin 99.7 1.9E-17 6.4E-22 120.9 2.2 58 104-161 15-78 (81)
43 2jtn_A LIM domain-binding prot 99.7 4.5E-17 1.5E-21 136.3 4.8 79 2-80 102-181 (182)
44 2dn0_A Zinc fingers and homeob 99.7 2.3E-17 7.9E-22 119.0 2.5 59 105-163 6-70 (76)
45 2m0c_A Homeobox protein arista 99.7 2.7E-17 9.2E-22 118.1 2.7 61 102-162 4-70 (75)
46 2l3k_A Rhombotin-2, linker, LI 99.7 2.7E-17 9.2E-22 129.2 2.7 70 14-83 1-72 (123)
47 1ftt_A TTF-1 HD, thyroid trans 99.7 2.2E-17 7.6E-22 116.5 2.0 57 107-163 2-64 (68)
48 1jgg_A Segmentation protein EV 99.6 2.1E-17 7.3E-22 113.7 1.6 52 108-159 2-59 (60)
49 2hi3_A Homeodomain-only protei 99.6 3.9E-17 1.3E-21 116.8 2.8 56 107-162 2-64 (73)
50 1wi3_A DNA-binding protein SAT 99.6 3.2E-17 1.1E-21 113.5 1.8 57 102-158 2-65 (71)
51 2ly9_A Zinc fingers and homeob 99.6 7.6E-17 2.6E-21 115.6 3.4 58 106-163 5-68 (74)
52 2k40_A Homeobox expressed in E 99.6 3.8E-17 1.3E-21 114.9 1.8 55 108-162 2-62 (67)
53 2cuf_A FLJ21616 protein; homeo 99.6 1E-16 3.6E-21 120.4 4.1 60 104-163 4-84 (95)
54 1uhs_A HOP, homeodomain only p 99.6 6.5E-17 2.2E-21 115.4 2.6 55 108-162 2-63 (72)
55 1b72_A Protein (homeobox prote 99.6 4.5E-17 1.5E-21 122.9 1.7 58 105-162 32-95 (97)
56 2ecc_A Homeobox and leucine zi 99.6 8.4E-17 2.9E-21 115.3 2.9 53 110-162 6-64 (76)
57 3a02_A Homeobox protein arista 99.6 3.5E-17 1.2E-21 112.6 0.8 52 110-161 2-59 (60)
58 2da5_A Zinc fingers and homeob 99.6 9.8E-17 3.3E-21 115.4 3.1 55 109-163 9-69 (75)
59 1akh_A Protein (mating-type pr 99.6 4.2E-17 1.4E-21 112.5 0.7 54 104-157 2-61 (61)
60 2ecb_A Zinc fingers and homeob 99.6 1.6E-16 5.4E-21 117.6 3.3 51 113-163 17-73 (89)
61 3rkq_A Homeobox protein NKX-2. 99.6 9.5E-17 3.2E-21 109.4 1.9 51 107-157 2-58 (58)
62 3a03_A T-cell leukemia homeobo 99.6 8.6E-17 2.9E-21 109.1 1.0 48 112-159 2-55 (56)
63 1x2n_A Homeobox protein pknox1 99.6 2.6E-16 9E-21 112.5 2.9 59 104-162 4-71 (73)
64 3f6q_B LIM and senescent cell 99.6 9.6E-16 3.3E-20 108.4 5.7 66 15-81 7-72 (72)
65 3nar_A ZHX1, zinc fingers and 99.6 1.7E-16 5.7E-21 119.5 1.5 57 104-160 22-84 (96)
66 1b8t_A Protein (CRP1); LIM dom 99.6 6.3E-16 2.2E-20 130.3 4.8 79 2-82 50-176 (192)
67 1puf_B PRE-B-cell leukemia tra 99.6 5.2E-16 1.8E-20 110.9 2.2 56 107-162 1-65 (73)
68 2da6_A Hepatocyte nuclear fact 99.6 5.5E-16 1.9E-20 117.0 2.3 60 104-163 3-89 (102)
69 2xsd_C POU domain, class 3, tr 99.6 2.9E-16 1E-20 129.3 0.6 59 104-162 96-160 (164)
70 1au7_A Protein PIT-1, GHF-1; c 99.6 4.1E-16 1.4E-20 126.1 1.3 57 103-159 83-145 (146)
71 1x4k_A Skeletal muscle LIM-pro 99.6 4.4E-15 1.5E-19 105.3 6.4 66 16-82 2-67 (72)
72 1e3o_C Octamer-binding transcr 99.6 4.5E-16 1.5E-20 127.7 1.2 57 103-159 97-159 (160)
73 2dmn_A Homeobox protein TGIF2L 99.6 2E-15 7E-20 110.5 4.5 60 105-164 5-73 (83)
74 2cqx_A LAG1 longevity assuranc 99.5 2.8E-16 9.7E-21 112.0 -0.6 53 108-160 9-68 (72)
75 1b72_B Protein (PBX1); homeodo 99.5 9.9E-16 3.4E-20 113.1 2.2 56 108-163 2-66 (87)
76 2dmp_A Zinc fingers and homeob 99.5 1.6E-15 5.6E-20 112.5 3.0 51 113-163 19-75 (89)
77 1lfb_A Liver transcription fac 99.5 7E-16 2.4E-20 116.5 0.9 61 102-162 4-91 (99)
78 1wyh_A SLIM 2, skeletal muscle 99.5 7.3E-15 2.5E-19 104.1 6.0 66 16-82 2-67 (72)
79 1du6_A PBX1, homeobox protein 99.5 6.7E-16 2.3E-20 107.5 0.5 52 107-158 3-63 (64)
80 1x61_A Thyroid receptor intera 99.5 1.1E-14 3.7E-19 103.3 6.7 67 17-84 3-69 (72)
81 2l9r_A Homeobox protein NKX-3. 99.5 8.8E-16 3E-20 108.4 0.7 52 111-162 8-65 (69)
82 3d1n_I POU domain, class 6, tr 99.5 2E-15 7E-20 122.7 2.5 55 104-158 90-150 (151)
83 2dar_A PDZ and LIM domain prot 99.5 1.5E-14 5.3E-19 107.2 6.6 75 5-82 11-85 (90)
84 1x68_A FHL5 protein; four-and- 99.5 7.2E-15 2.4E-19 105.5 4.4 66 16-82 2-69 (76)
85 1wig_A KIAA1808 protein; LIM d 99.5 7.2E-15 2.5E-19 104.9 4.2 65 16-82 2-66 (73)
86 3l1p_A POU domain, class 5, tr 99.5 2.4E-15 8.3E-20 122.7 1.8 55 105-159 94-154 (155)
87 1x4l_A Skeletal muscle LIM-pro 99.5 8.3E-15 2.8E-19 104.0 4.3 64 17-81 3-68 (72)
88 1k61_A Mating-type protein alp 99.5 2.4E-15 8E-20 103.4 1.3 49 111-159 2-59 (60)
89 3nau_A Zinc fingers and homeob 99.5 1.6E-15 5.5E-20 105.2 0.4 45 115-159 12-62 (66)
90 1nyp_A Pinch protein; LIM doma 99.5 1.1E-14 3.6E-19 101.6 4.5 63 16-81 2-64 (66)
91 1mnm_C Protein (MAT alpha-2 tr 99.5 3.8E-15 1.3E-19 110.0 1.8 53 106-158 26-87 (87)
92 1g47_A Pinch protein; LIM doma 99.5 1.7E-14 5.9E-19 103.5 5.0 66 16-82 8-73 (77)
93 2e19_A Transcription factor 8; 99.5 3.6E-15 1.2E-19 103.8 1.0 49 111-159 7-61 (64)
94 2cur_A Skeletal muscle LIM-pro 99.5 4.5E-14 1.5E-18 99.3 5.9 63 17-82 3-65 (69)
95 1le8_B Mating-type protein alp 99.5 7E-15 2.4E-19 107.6 1.4 52 109-160 4-64 (83)
96 2iyb_E Testin, TESS, TES; LIM 99.5 3.5E-14 1.2E-18 98.9 4.8 61 18-79 1-64 (65)
97 2d8z_A Four and A half LIM dom 99.5 5.2E-14 1.8E-18 99.2 5.6 63 17-82 3-65 (70)
98 2d5v_A Hepatocyte nuclear fact 99.5 7.9E-15 2.7E-19 120.7 0.9 58 104-161 94-157 (164)
99 2l4z_A DNA endonuclease RBBP8, 99.5 4.6E-14 1.6E-18 110.8 4.9 65 16-81 58-123 (123)
100 2d8x_A Protein pinch; LIM doma 99.4 9.6E-14 3.3E-18 97.9 6.0 63 17-82 3-65 (70)
101 1x2m_A LAG1 longevity assuranc 99.4 7.1E-15 2.4E-19 101.9 0.0 44 116-159 9-59 (64)
102 2cu8_A Cysteine-rich protein 2 99.4 1.1E-13 3.6E-18 99.3 5.9 66 15-82 5-71 (76)
103 2dj7_A Actin-binding LIM prote 99.4 2.6E-13 8.9E-18 98.5 5.7 61 19-82 15-75 (80)
104 1x64_A Alpha-actinin-2 associa 99.4 3.3E-13 1.1E-17 99.7 5.4 61 18-81 24-84 (89)
105 1a7i_A QCRP2 (LIM1); LIM domai 99.4 2.8E-13 9.5E-18 98.3 4.9 63 18-82 6-68 (81)
106 1x62_A C-terminal LIM domain p 99.4 1.4E-13 4.8E-18 99.5 3.0 60 19-81 15-74 (79)
107 2d8y_A Eplin protein; LIM doma 99.4 4E-13 1.4E-17 99.7 4.9 65 16-82 12-76 (91)
108 2cor_A Pinch protein; LIM doma 99.4 3.4E-13 1.1E-17 97.6 3.9 63 16-82 12-74 (79)
109 2cup_A Skeletal muscle LIM-pro 99.4 2.9E-13 9.8E-18 102.1 3.6 53 2-54 49-101 (101)
110 1j2o_A FLIN2, fusion of rhombo 99.4 6.9E-13 2.4E-17 102.5 5.6 63 19-82 3-66 (114)
111 2cup_A Skeletal muscle LIM-pro 99.3 6.7E-13 2.3E-17 100.1 5.1 65 17-82 3-67 (101)
112 1iml_A CRIP, cysteine rich int 99.3 1.1E-12 3.8E-17 93.9 5.4 61 20-82 1-62 (76)
113 2co8_A NEDD9 interacting prote 99.3 3E-13 1E-17 98.5 2.1 62 19-82 15-78 (82)
114 2xqn_T Testin, TESS; metal-bin 99.3 1.4E-12 4.8E-17 102.3 5.6 64 17-82 1-64 (126)
115 1m3v_A FLIN4, fusion of the LI 99.3 8E-13 2.8E-17 103.4 3.5 65 17-82 3-68 (122)
116 3k2a_A Homeobox protein MEIS2; 99.3 3.6E-13 1.2E-17 94.5 0.7 51 113-163 4-63 (67)
117 1ic8_A Hepatocyte nuclear fact 99.3 2.8E-13 9.5E-18 114.1 0.1 56 103-158 111-193 (194)
118 2xjy_A Rhombotin-2; oncoprotei 99.2 8.2E-12 2.8E-16 98.4 6.5 62 20-82 3-65 (131)
119 2jtn_A LIM domain-binding prot 99.2 1E-11 3.5E-16 103.5 6.2 75 5-82 43-120 (182)
120 1rut_X Flinc4, fusion protein 99.2 8.9E-12 3E-16 104.5 4.5 65 17-82 3-68 (188)
121 2h8r_A Hepatocyte nuclear fact 99.1 7.7E-12 2.6E-16 106.5 1.6 55 102-156 137-218 (221)
122 2da7_A Zinc finger homeobox pr 99.1 5E-12 1.7E-16 88.1 0.3 40 116-155 14-59 (71)
123 2nzz_A Penetratin conjugated G 99.1 1E-11 3.6E-16 76.1 1.4 22 143-164 1-22 (37)
124 2rgt_A Fusion of LIM/homeobox 99.1 7.8E-11 2.7E-15 97.0 5.2 61 19-82 6-66 (169)
125 1b8t_A Protein (CRP1); LIM dom 99.1 8.6E-11 2.9E-15 98.7 5.5 62 19-82 7-68 (192)
126 1mh3_A Maltose binding-A1 home 99.0 2.1E-11 7.2E-16 112.8 -1.8 51 107-157 365-421 (421)
127 2lk2_A Homeobox protein TGIF1; 98.9 2.1E-10 7.3E-15 84.2 0.8 52 112-163 10-70 (89)
128 1m3v_A FLIN4, fusion of the LI 98.7 8.9E-10 3E-14 85.9 -0.5 64 2-81 50-115 (122)
129 1j2o_A FLIN2, fusion of rhombo 98.4 2.7E-08 9.2E-13 76.5 -0.1 60 2-81 48-107 (114)
130 1zfo_A LAsp-1; LIM domain, zin 97.5 1.8E-05 6.3E-10 46.4 0.9 29 19-48 3-31 (31)
131 1iml_A CRIP, cysteine rich int 96.6 0.00039 1.3E-08 48.7 0.6 29 2-30 43-72 (76)
132 1a7i_A QCRP2 (LIM1); LIM domai 96.4 0.00044 1.5E-08 49.1 -0.3 28 2-29 50-77 (81)
133 1x68_A FHL5 protein; four-and- 96.0 0.0017 5.8E-08 45.4 1.1 25 2-26 51-75 (76)
134 2cur_A Skeletal muscle LIM-pro 95.1 0.0033 1.1E-07 43.0 -0.3 23 2-24 47-69 (69)
135 2d8z_A Four and A half LIM dom 95.1 0.0043 1.5E-07 42.5 0.3 23 2-24 47-69 (70)
136 1wyh_A SLIM 2, skeletal muscle 95.0 0.0037 1.3E-07 43.0 -0.2 23 2-24 49-71 (72)
137 1x4k_A Skeletal muscle LIM-pro 94.9 0.0041 1.4E-07 42.7 -0.2 23 2-24 49-71 (72)
138 2d8y_A Eplin protein; LIM doma 94.5 0.011 3.6E-07 42.8 1.2 22 2-23 58-79 (91)
139 2l3k_A Rhombotin-2, linker, LI 91.8 0.03 1E-06 42.7 0.0 37 6-48 29-65 (123)
140 1x61_A Thyroid receptor intera 90.7 0.034 1.2E-06 38.0 -0.6 23 2-25 49-71 (72)
141 2d8x_A Protein pinch; LIM doma 89.9 0.059 2E-06 36.6 -0.0 22 2-23 47-68 (70)
142 1wig_A KIAA1808 protein; LIM d 70.5 2.9 9.9E-05 28.3 2.7 28 21-48 33-60 (73)
143 1v9x_A Poly (ADP-ribose) polym 61.6 3.5 0.00012 31.0 1.8 23 14-36 15-37 (114)
144 2dmj_A Poly (ADP-ribose) polym 59.7 3.9 0.00013 30.3 1.7 23 14-36 20-42 (106)
145 4ap4_A E3 ubiquitin ligase RNF 57.9 3.6 0.00012 30.6 1.3 73 6-82 33-112 (133)
146 2e6s_A E3 ubiquitin-protein li 54.8 13 0.00045 25.7 3.7 46 3-48 6-56 (77)
147 2ys9_A Homeobox and leucine zi 53.2 2 7E-05 29.4 -0.7 33 120-152 19-57 (70)
148 3od8_A Poly [ADP-ribose] polym 51.5 4.9 0.00017 30.3 1.1 17 20-36 39-55 (116)
149 3odc_A Poly [ADP-ribose] polym 49.1 5.4 0.00018 29.8 1.0 17 20-36 20-36 (111)
150 2ehe_A Four and A half LIM dom 46.4 20 0.00068 24.3 3.6 27 21-48 45-71 (82)
151 2dar_A PDZ and LIM domain prot 45.1 8.7 0.0003 26.8 1.6 12 21-32 53-64 (90)
152 2vpb_A Hpygo1, pygopus homolog 44.8 11 0.00039 25.1 2.0 27 21-47 10-39 (65)
153 1x64_A Alpha-actinin-2 associa 44.5 10 0.00034 26.4 1.8 23 21-44 53-75 (89)
154 2gvi_A Conserved hypothetical 43.7 7 0.00024 32.3 1.0 30 48-78 173-202 (204)
155 1uw0_A DNA ligase III; DNA rep 43.3 7.1 0.00024 29.4 0.9 16 21-36 17-32 (117)
156 1x6a_A LIMK-2, LIM domain kina 43.0 12 0.00042 25.3 2.0 28 21-48 43-71 (81)
157 2eqg_A Tumor necrosis factor, 42.7 11 0.00036 23.3 1.4 19 63-81 22-40 (49)
158 4av1_A Poly [ADP-ribose] polym 40.7 9.4 0.00032 32.1 1.3 36 14-49 34-79 (223)
159 2co8_A NEDD9 interacting prote 38.8 18 0.00063 24.7 2.4 28 21-48 44-72 (82)
160 2das_A Zinc finger MYM-type pr 37.6 20 0.00067 23.7 2.2 26 48-73 21-48 (62)
161 2cs2_A Poly [ADP-ribose] polym 36.6 12 0.00041 28.8 1.3 16 20-35 28-43 (134)
162 1t1h_A Gspef-atpub14, armadill 34.6 30 0.001 22.9 3.0 34 46-81 7-40 (78)
163 1jjd_A Metallothionein, SMTA; 33.9 25 0.00087 22.7 2.3 27 49-76 9-36 (55)
164 3nw0_A Non-structural maintena 33.9 10 0.00034 32.1 0.4 37 20-57 181-227 (238)
165 2jtd_A Myomesin-1, skelemin; i 33.5 6.2 0.00021 30.4 -0.9 39 112-150 17-60 (142)
166 2ecy_A TNF receptor-associated 32.4 15 0.0005 23.8 1.0 9 49-57 52-60 (66)
167 1e4u_A Transcriptional repress 31.9 15 0.0005 25.3 0.9 9 49-57 52-60 (78)
168 1jm7_B BARD1, BRCA1-associated 30.4 26 0.00088 25.6 2.2 10 48-57 56-65 (117)
169 2a20_A Regulating synaptic mem 29.8 17 0.00059 23.9 0.9 18 3-20 5-22 (62)
170 1weo_A Cellulose synthase, cat 28.1 1.6E+02 0.0056 20.9 6.1 12 19-30 16-27 (93)
171 1g25_A CDK-activating kinase a 27.5 30 0.001 22.1 1.9 8 50-57 46-53 (65)
172 2ysj_A Tripartite motif-contai 26.3 47 0.0016 20.9 2.7 33 47-81 20-52 (63)
173 2e5r_A Dystrobrevin alpha; ZZ 26.1 61 0.0021 21.2 3.2 37 40-79 6-45 (63)
174 2ct0_A Non-SMC element 1 homol 25.5 16 0.00054 25.1 0.2 28 20-48 16-43 (74)
175 2yu4_A E3 SUMO-protein ligase 25.4 50 0.0017 23.1 2.9 35 47-83 7-42 (94)
176 2x7l_M HIV REV; nuclear export 24.8 32 0.0011 25.6 1.7 33 121-162 17-50 (115)
177 2cs3_A Protein C14ORF4, MY039 24.1 24 0.00082 24.8 0.9 30 21-51 17-46 (93)
178 2ecw_A Tripartite motif-contai 24.1 51 0.0018 21.8 2.7 34 47-82 19-52 (85)
179 2xb1_A Pygopus homolog 2, B-ce 24.1 53 0.0018 23.8 2.9 50 21-78 5-61 (105)
180 1iym_A EL5; ring-H2 finger, ub 24.0 54 0.0018 19.9 2.6 28 21-48 7-36 (55)
181 3asl_A E3 ubiquitin-protein li 23.7 43 0.0015 22.4 2.1 39 8-48 3-48 (70)
182 3lph_A Protein REV; helix-loop 23.4 54 0.0019 22.3 2.5 33 120-161 19-52 (72)
183 2csy_A Zinc finger protein 183 23.3 54 0.0018 21.9 2.7 32 48-81 16-47 (81)
184 3l11_A E3 ubiquitin-protein li 23.1 27 0.00094 25.2 1.1 46 8-58 16-61 (115)
185 1bor_A Transcription factor PM 22.9 44 0.0015 20.8 2.0 9 49-57 39-47 (56)
186 2egp_A Tripartite motif-contai 22.6 32 0.0011 22.7 1.3 11 48-58 54-64 (79)
187 2kr4_A Ubiquitin conjugation f 22.4 58 0.002 22.3 2.7 35 45-81 12-46 (85)
188 2yur_A Retinoblastoma-binding 21.7 65 0.0022 21.1 2.8 33 48-82 16-49 (74)
189 2ysl_A Tripartite motif-contai 21.2 54 0.0018 21.2 2.2 33 47-81 20-52 (73)
190 3iz6_M 40S ribosomal protein S 21.0 52 0.0018 25.8 2.4 30 113-153 58-87 (152)
191 2ecv_A Tripartite motif-contai 21.0 52 0.0018 21.8 2.2 34 47-82 19-52 (85)
192 2ct2_A Tripartite motif protei 20.7 72 0.0025 21.3 2.9 35 48-82 16-52 (88)
No 1
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.86 E-value=2.5e-23 Score=172.51 Aligned_cols=116 Identities=30% Similarity=0.600 Sum_probs=96.6
Q ss_pred cccCCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEe-eCCeecchhhHHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKEM 80 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~-~~~~lyC~~cy~k~f 80 (267)
|.+||++||+.||.++|+++|.+|+++|.+.+.++.+.++.||++||+|..|++.|..|..|+. .++++||..||.+++
T Consensus 48 f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 48 FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred cccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 6799999999999999999999999999988888899999999999999999999976777765 589999999999987
Q ss_pred hhhcCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChh
Q psy10849 81 YLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~ 135 (267)
..-. + ..+.||.||.|+.+||++|++.|+.+++|+..
T Consensus 128 ~~~~-----------------~-~~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 128 QGGS-----------------G-GSGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp HCC----------------------------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred hccC-----------------C-CCCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 6310 1 13468999999999999999999999999754
No 2
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-20 Score=134.06 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
||++||+.||.++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTCQDSELLCNDCYCSAFSS 77 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS-SCCEEEETTEEEETTTSSCCGGG
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC-CCccEeeCCEEECHHHHhhhcCC
Confidence 689999999999999999999999996567888999999999999999999996 67899999999999999998874
No 3
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=2.6e-19 Score=130.62 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++.+||+.||.++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 77 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG-TGSFFPKGEDFYCVTCHETKFAS 77 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT-TSCEEEETTEEEEHHHHHHHTSC
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC-CCccEeeCCEEECHHHHHHHhCC
Confidence 478999999999999999999999998778899999999999999999999996 45799999999999999999864
No 4
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=127.46 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=67.6
Q ss_pred CCcccCccccccccCCCCCCCCCcccC---CCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHH
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLP---HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKE 79 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~---~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~ 79 (267)
++++||+.||.++|+++|.+|+++|.+ .+.++.+.++.||++||+|..|+++|. +..|+.+++++||..||.++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT-TSCCCEETTEECCHHHHHHC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC-CCccEeECCEEEChHHhccC
Confidence 478999999999999999999999996 446888999999999999999999996 67899999999999999763
No 5
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=5.1e-19 Score=128.49 Aligned_cols=75 Identities=28% Similarity=0.510 Sum_probs=69.5
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+|++||+.||.++|+++|.+|+++|.+. ++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 75 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPLA-GQQFTSRDEDPYCVACFGELFAS 75 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC--CEESSSSEECTTTCBCSSSCCBCT-TCCEEECSSSEEEHHHHHHHTTC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc--EEEECCchhhhhhCCcccCCCcCC-CCeeEeECCEEECHHHHHHHcCC
Confidence 5899999999999999999999999864 678999999999999999999995 67899999999999999999874
No 6
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=8.5e-19 Score=127.28 Aligned_cols=75 Identities=24% Similarity=0.492 Sum_probs=68.9
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+|++||+.||.++|+++|.+|+++|.+. ++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~~y~~~f~~ 75 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN--YLSAMDTVWHPECFVCGDCFTSFS-TGSFFELDGRPFCELHYHHRRGS 75 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS--CEEETTEEECTTTCBCSSSCCBSC-SSCCEESSSCEECHHHHHHHHSS
T ss_pred CCCccchhHHhhhcCCccccCCCeecce--eEEECCCeEecCcCChhhCCCCCC-CCcEEeECCEEECHHHHHHHcCC
Confidence 5899999999999999999999999963 678999999999999999999996 45788999999999999999874
No 7
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=6.2e-19 Score=128.40 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=69.0
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEe-eCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~-~~~~lyC~~cy~k~f~~ 82 (267)
.+.+||+.||.++|+++|.+|+++|.+ .++.+.++.||++||+|..|+++|..|..|.+ +++++||+.||.++|+.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTG--PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCS--CCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCc--eEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 468999999999999999999999993 47789999999999999999999976788884 89999999999999874
No 8
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.74 E-value=2.1e-19 Score=151.26 Aligned_cols=81 Identities=36% Similarity=0.778 Sum_probs=74.9
Q ss_pred cccCCcccCccccccccCC--CCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKE 79 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~--~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~ 79 (267)
|.+||++||+.||.++|++ +|..|+++|.+.|.++.+.++.||+.||+|..|++.|..|..|+..++++||..||.++
T Consensus 50 ~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~ 129 (188)
T 1rut_X 50 YTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129 (188)
T ss_dssp EEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTT
T ss_pred EEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHH
Confidence 6799999999999999999 79999999998778899999999999999999999996678899999999999999988
Q ss_pred Hhh
Q psy10849 80 MYL 82 (267)
Q Consensus 80 f~~ 82 (267)
|+.
T Consensus 130 ~~~ 132 (188)
T 1rut_X 130 LIN 132 (188)
T ss_dssp TC-
T ss_pred hcc
Confidence 765
No 9
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.73 E-value=1.7e-18 Score=137.22 Aligned_cols=81 Identities=31% Similarity=0.664 Sum_probs=75.9
Q ss_pred cccCCcccCccccccccCC--CCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKE 79 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~--~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~ 79 (267)
|.+||++||+.||.++|++ +|..|+++|.+.|.++.+.++.||++||+|..|+++|..|..|+..++++||..||.++
T Consensus 47 ~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 47 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126 (131)
T ss_dssp EEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHH
T ss_pred EEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHH
Confidence 5789999999999999999 99999999998778899999999999999999999996678899999999999999999
Q ss_pred Hhh
Q psy10849 80 MYL 82 (267)
Q Consensus 80 f~~ 82 (267)
|+.
T Consensus 127 ~~~ 129 (131)
T 2xjy_A 127 TKI 129 (131)
T ss_dssp HHH
T ss_pred hhc
Confidence 874
No 10
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.9e-18 Score=124.19 Aligned_cols=74 Identities=31% Similarity=0.608 Sum_probs=67.4
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEee-CCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~-~~~lyC~~cy~k~f~~ 82 (267)
||++||+.||. +++++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+.. ++++||+.||.++|+.
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC~~cy~~~f~~ 76 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGLD-GIPFTVDATSQIHCIEDFHRKFAS 76 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBCT-TSCEECCTTCCCEEHHHHHHHTTS
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc--eeEEECCccccHHhcCcccCCCccC-CCeeEECCCCEEECHHHHHHHhcC
Confidence 78999999998 799999999999984 4788999999999999999999996 6778876 6899999999999874
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-18 Score=125.92 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
..+.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 456789999999999999999999999999988887 999999999999999999976544
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-18 Score=126.00 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 102 DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 102 ~~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
...++.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||...
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 44567789999999999999999999999999998887 9999999999999999999654
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2e-18 Score=122.62 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
..+.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 345688999999999999999999999999998887 9999999999999999999654
No 14
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=2e-18 Score=125.73 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhc----CCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEV----SPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~----~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
+.++.||.||.||.+|+.+||..|+. ++||+...|++ |++++|||||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44667899999999999999999999 99999998887 9999999999999999986
No 15
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-18 Score=123.20 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.+.||.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999988887 999999999999999999976544
No 16
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.6e-18 Score=125.12 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45688999999999999999999999999988877 999999999999999999977654
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=124.43 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
...+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999999999999998887 99999999999999999997643
No 18
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=6e-18 Score=122.33 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
...+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456788999999999999999999999999998887 999999999999999999976654
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-18 Score=121.27 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
..+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 355788999999999999999999999999998887 99999999999999999996543
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=124.80 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 101 RDGRRGPKRPRTILTSAQRRQFKSSFEV-----SPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 101 ~~~~~~~kr~Rt~ft~~Ql~~L~~~f~~-----~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
.+...+.||.||.||.+|+.+|| +|+. ++||+...|++ |++++|||||||||+|+|+
T Consensus 11 ~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 11 SSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34456789999999999999999 8999 99999998887 9999999999999999987
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=121.54 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
..+.+|.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 345788999999999999999999999999888877 99999999999999999997543
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-18 Score=121.14 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
..+.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 345688999999999999999999999999998887 9999999999999999999653
No 23
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-18 Score=120.62 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
.+.+|.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 45688999999999999999999999999988887 9999999999999999999654
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=4.6e-18 Score=120.06 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=52.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478999999999999999999999999988877 999999999999999999976544
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4e-18 Score=124.13 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcC----CCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVS----PKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~----~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
+..+.||.||.||.+|+.+||..|+.+ +||+...+++ |++++|+|||||||+|+|+..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456678999999999999999999999 9999988877 999999999999999999954
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=6.6e-18 Score=122.14 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.++.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 455788999999999999999999999999998887 999999999999999999987654
No 27
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=131.17 Aligned_cols=78 Identities=26% Similarity=0.582 Sum_probs=72.9
Q ss_pred cccCCcccCccccccccCCCCCCCCCcccCCCcEEEecCceee--cCCcccccccccCCCCCceEeeCCeecchhhHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYH--LPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKE 79 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH--~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~ 79 (267)
+.+||++||+.||.++|+++|.+|+++|.+++.+|.+.++.|| ++||+|..|+++|. |..|++.++++||..+|.++
T Consensus 46 ~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~-~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 46 VMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp EEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCT-TSEEEEETTEEESSHHHHHS
T ss_pred EeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccC-CCeeEeECCEEcchHHhhhh
Confidence 4789999999999999999999999999987788999999999 99999999999996 78999999999999888876
Q ss_pred H
Q psy10849 80 M 80 (267)
Q Consensus 80 f 80 (267)
|
T Consensus 125 f 125 (126)
T 2xqn_T 125 M 125 (126)
T ss_dssp C
T ss_pred c
Confidence 5
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=1.2e-17 Score=119.52 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
..+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 345688999999999999999999999999998887 99999999999999999996543
No 29
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.7e-17 Score=119.69 Aligned_cols=74 Identities=27% Similarity=0.522 Sum_probs=64.8
Q ss_pred CcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 6 SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 6 g~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
+.+||+.||.++|+++|.+|+++|.+ .++.+.++.||++||+|..|+++|..+..|...++.+||..||.++++
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 56899999999999999999999994 478899999999999999999999766666666667899999977654
No 30
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.68 E-value=4.9e-18 Score=117.69 Aligned_cols=54 Identities=20% Similarity=0.136 Sum_probs=46.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 106 GPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 106 ~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3578999999999999999999999999998887 99999999999999999985
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=1e-17 Score=118.20 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
+||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578999999999999999999999999988877 999999999999999999976544
No 32
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.68 E-value=6.3e-18 Score=117.53 Aligned_cols=54 Identities=26% Similarity=0.235 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 578999999999999999999999999998887 999999999999999999863
No 33
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-18 Score=123.33 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
...+.||.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3466789999999999999999999999999988877 9999999999999999999653
No 34
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=6.2e-18 Score=116.80 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 478999999999999999999999999998887 9999999999999999997
No 35
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=118.43 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
.+.++.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 34678899999999999999999999999988887 9999999999999999999754
No 36
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.1e-17 Score=114.31 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 108 KRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 57899999999999999999999999998887 99999999999999999973
No 37
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=1.1e-17 Score=118.01 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 106 GPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 106 ~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 3588999999999999999999999999888877 99999999999999999997654
No 38
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=1.1e-17 Score=117.37 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 106 GPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 106 ~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
+.+|.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4688999999999999999999999999988877 999999999999999999854
No 39
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.66 E-value=2.2e-17 Score=123.65 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
..+.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 355688999999999999999999999999998887 999999999999999999976554
No 40
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=1.2e-17 Score=121.92 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
..+.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 345688999999999999999999999999998887 9999999999999999999653
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=1.3e-17 Score=123.57 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
..+.||.||.||..|+.+||..|+.++||+...|++ |++++|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 445788999999999999999999999999998887 999999999999999999864
No 42
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=1.9e-17 Score=120.86 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
.++.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 566789999999999999999999999999988877 9999999999999999999764
No 43
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.66 E-value=4.5e-17 Score=136.29 Aligned_cols=79 Identities=39% Similarity=0.833 Sum_probs=71.9
Q ss_pred cccCCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEe-eCCeecchhhHHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKEM 80 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~-~~~~lyC~~cy~k~f 80 (267)
|.+||++||+.||.++|+++|..|+++|.+.+.++.+.++.||+.||+|..|+++|..|..|+. .++++||..||.++.
T Consensus 102 f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 102 FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred eeECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 6789999999999999999999999999987778889999999999999999999976777765 589999999998763
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-17 Score=118.96 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
..+.+.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 34566799999999999999999999999988887 999999999999999999976544
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-17 Score=118.11 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 102 DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 102 ~~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
+...+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34456788999999999999999999999999988877 89999999999999999996544
No 46
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.65 E-value=2.7e-17 Score=129.23 Aligned_cols=70 Identities=34% Similarity=0.760 Sum_probs=64.5
Q ss_pred cccccCC--CCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhhh
Q psy10849 14 GFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLM 83 (267)
Q Consensus 14 y~~~f~~--~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~~ 83 (267)
|.++|+. +|.+|++.|...+.++.+.++.||..||+|..|+++|..|..|+.+++++||..||.++|+..
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~ 72 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKIN 72 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccc
Confidence 6789999 999999999987778899999999999999999999966788999999999999999999873
No 47
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=2.2e-17 Score=116.52 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 478899999999999999999999999988877 999999999999999999976543
No 48
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=2.1e-17 Score=113.70 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 108 KRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 67899999999999999999999999988877 99999999999999999985
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=3.9e-17 Score=116.84 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc-CCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEV-SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~-~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.++.||.||..|+.+||..|+. ++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999995 99999998887 99999999999999999997643
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.2e-17 Score=113.54 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhc-CCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 102 DGRRGPKRPRTILTSAQRRQFKSSFEV-SPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 102 ~~~~~~kr~Rt~ft~~Ql~~L~~~f~~-~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
++.++.||.||.|+.+||.+|+..|+. ++||+..+|++ |++++|||||||||.-.|-
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 345678999999999999999999999 99999999988 9999999999999987554
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-17 Score=115.55 Aligned_cols=58 Identities=16% Similarity=0.011 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 106 GPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 106 ~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
..++.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 3578899999999999999999999999998877 999999999999999999976443
No 52
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-17 Score=114.91 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 108 KRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 78899999999999999999999999988877 99999999999999999996544
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1e-16 Score=120.41 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh---------------------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM---------------------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~---------------------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
..+.||.||.||..|+.+||+.|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999999999999999887776 67899999999999999998765
Q ss_pred c
Q psy10849 163 S 163 (267)
Q Consensus 163 ~ 163 (267)
.
T Consensus 84 ~ 84 (95)
T 2cuf_A 84 A 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=6.5e-17 Score=115.36 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 108 KRPRTILTSAQRRQFKSSFEV-SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f~~-~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.+.||.||..|+.+||..|+. ++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 457899999999999999997 99999988877 99999999999999999997643
No 55
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=4.5e-17 Score=122.87 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.+.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 45688999999999999999999999999998887 99999999999999999997654
No 56
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=8.4e-17 Score=115.33 Aligned_cols=53 Identities=15% Similarity=-0.074 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 110 PRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 110 ~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.|+.||.+||.+||+.|+.++||+..+|++ |++++|+|||||||+|+|+....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 466799999999999999999999999888 99999999999999999996543
No 57
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=3.5e-17 Score=112.61 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 110 PRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 110 ~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
.||.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 589999999999999999999999988877 9999999999999999999653
No 58
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.8e-17 Score=115.37 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 109 RPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 109 r~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
+.|+.||.+|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4567799999999999999999999998877 999999999999999999976544
No 59
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.62 E-value=4.2e-17 Score=112.53 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFK 157 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k 157 (267)
+++.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999988877 999999999999999986
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.6e-16 Score=117.65 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 113 ILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 113 ~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.||.+||.+||+.|+.++||+...|++ |++++|+|||||||+|||+..+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 689999999999999999999998888 999999999999999999966544
No 61
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=9.5e-17 Score=109.44 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFK 157 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k 157 (267)
.+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 367899999999999999999999999988877 999999999999999986
No 62
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.60 E-value=8.6e-17 Score=109.15 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 112 TILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 112 t~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
|.||..|+.+||..|+.++||+...|++ |++++|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 7899999999999999999999998887 99999999999999999985
No 63
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=112.45 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
..+.+|.||.|+..|+.+||..|.. ++||+...+++ |++++|+|||||||+|+|+....
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3456889999999999999999987 99999998887 99999999999999999997644
No 64
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.59 E-value=9.6e-16 Score=108.42 Aligned_cols=66 Identities=29% Similarity=0.679 Sum_probs=60.1
Q ss_pred ccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 15 FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 15 ~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
...++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|..+ .|+.+++++||+.||.++||
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhhC
Confidence 4478889999999999888888999999999999999999999754 78899999999999999885
No 65
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.7e-16 Score=119.52 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
....+|.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 455678999999999999999999999999998887 999999999999999999964
No 66
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.59 E-value=6.3e-16 Score=130.33 Aligned_cols=79 Identities=25% Similarity=0.626 Sum_probs=70.7
Q ss_pred cccCCcccCccccccccCCC------------------------------------------------CCCCCCcccCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVK------------------------------------------------CARCGDRLLPHE 33 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~------------------------------------------------C~~C~~~I~~~e 33 (267)
|.+||++||+.||.++|+++ |.+|+++|.+.+
T Consensus 50 ~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~ 129 (192)
T 1b8t_A 50 AVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE 129 (192)
T ss_dssp EEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS
T ss_pred EecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE
Confidence 56899999999999999876 778999998776
Q ss_pred cEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 34 MVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 34 ~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.+ .+.++.||.+||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 130 ~v-~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~ 176 (192)
T 1b8t_A 130 KV-IGAGKSWHKSCFRCAKCGKSLE-STTLADKDGEIYCKGCYAKNFGP 176 (192)
T ss_dssp CE-EETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHTCC
T ss_pred EE-ecCCCccchhcCCccccCCCCC-CCcccccCCEEeCHHHHHHhcCC
Confidence 55 5999999999999999999996 45799999999999999999875
No 67
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.57 E-value=5.2e-16 Score=110.90 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSF---EVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f---~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
+||.||.||..|+.+|+..| ..++||+...+++ |++++|+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 37889999999999999999 8999999988877 99999999999999999996544
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-16 Score=116.97 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh----c-----------------------CCCceeeecchhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM----N-----------------------SKRAKNILTPNQRRQF 156 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~----l-----------------------~~~~v~vWFQNrRak~ 156 (267)
.++.||.||.|+..|+.+||+.|+.++||+...|++ | ++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 356789999999999999999999999999888877 4 4678999999999999
Q ss_pred hhhhhhc
Q psy10849 157 KSSFEIS 163 (267)
Q Consensus 157 k~~~~~~ 163 (267)
|+..+..
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9976654
No 69
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.56 E-value=2.9e-16 Score=129.29 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.++.||.||.||..|+.+||+.|+.++||+...|++ |++++|+|||||||+|+||..+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 456788999999999999999999999999998887 99999999999999999997643
No 70
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=4.1e-16 Score=126.09 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
..++.||.||.||..|+.+||..|+.++||+...|++ |++++|+|||||||+|+||+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3456788999999999999999999999999998887 99999999999999999985
No 71
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=4.4e-15 Score=105.27 Aligned_cols=66 Identities=27% Similarity=0.589 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+.+++++||..||.++|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEKQHAS 67 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC-SSSEEEETTEEEEHHHHHHHTSS
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC-CCccCccCCeEECHHHHhHHhCC
Confidence 4688999999999998777899999999999999999999996 45899999999999999998864
No 72
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.56 E-value=4.5e-16 Score=127.75 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
+..+.||.||.||..|+.+||+.|+.++||+...|++ |++++|+|||||||+|+||.
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3456788999999999999999999999999998887 99999999999999999985
No 73
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=110.53 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhcc
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEISS 164 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~~ 164 (267)
.+.|+.|+.|+.+|+.+|+..|.. ++||+..++++ |+++||+|||||||+|+|+......
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 345788999999999999999977 69999998888 9999999999999999998765543
No 74
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=2.8e-16 Score=112.04 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 108 KRPRTILTSAQRRQFKSSF-EVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f-~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
.+.|+.++.+|+.+||+.| +.++||+...|++ |++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4566778899999999999 9999999998877 999999999999999999854
No 75
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.55 E-value=9.9e-16 Score=113.12 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 108 KRPRTILTSAQRRQFKSSF---EVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 108 kr~Rt~ft~~Ql~~L~~~f---~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
||.||.||..|+.+||..| ..++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6889999999999999999 8999999988887 999999999999999999976544
No 76
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=112.48 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 113 ILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 113 ~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.||.+||.+||..|+.++||+...|++ |++++|+|||||||+|+|+..+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 389999999999999999999998887 999999999999999999976554
No 77
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.54 E-value=7e-16 Score=116.52 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh---------------------------cCCCceeeecchhhh
Q psy10849 102 DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM---------------------------NSKRAKNILTPNQRR 154 (267)
Q Consensus 102 ~~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~---------------------------l~~~~v~vWFQNrRa 154 (267)
+..++.||.||.||..|+.+||..|+.++||+...|++ |++++|+|||||||+
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 34567899999999999999999999999999877654 678899999999999
Q ss_pred hhhhhhhh
Q psy10849 155 QFKSSFEI 162 (267)
Q Consensus 155 k~k~~~~~ 162 (267)
|+|+..+.
T Consensus 84 k~k~k~~~ 91 (99)
T 1lfb_A 84 EEAFRHKL 91 (99)
T ss_dssp TTSCCC--
T ss_pred HHHHhchh
Confidence 99886543
No 78
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=7.3e-15 Score=104.13 Aligned_cols=66 Identities=24% Similarity=0.608 Sum_probs=59.7
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++|+++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+.+++++||..||.++|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG-SRSFVPDKGAHYCVPCYENKFAS 67 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT-TSCEEEETTEEEEHHHHHHHTSC
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC-CCccCCcCCeEECHHHHHHHccC
Confidence 4688999999999997667889999999999999999999996 56799999999999999998864
No 79
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=6.7e-16 Score=107.47 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSF---EVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f---~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
.++.|+.|+..|+.+||..| ..++||+...+++ |++++|+|||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 8999999988877 9999999999999999987
No 80
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.1e-14 Score=103.33 Aligned_cols=67 Identities=22% Similarity=0.526 Sum_probs=60.4
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhhhc
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQ 84 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~~~ 84 (267)
.++++|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+...
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT-TSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC-cCcCEeeCCeEECHHHHHHHHccCC
Confidence 467899999999997667888999999999999999999995 7889999999999999999997543
No 81
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=8.8e-16 Score=108.43 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhh
Q psy10849 111 RTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 111 Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
-...|..|+.+||+.|+.++||+...|++ |++++|+|||||||+|+||....
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 35789999999999999999999998887 99999999999999999996543
No 82
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.53 E-value=2e-15 Score=122.67 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
..+.||.||.||..|+.+||+.|+.++||+...+++ |++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345688999999999999999999999999998887 9999999999999999997
No 83
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.5e-14 Score=107.17 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.0
Q ss_pred CCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 5 dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+....++..+...+.++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~ 85 (90)
T 2dar_A 11 TLVQRAEHIPAGKRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTMA-YIGFVEEKGALYCELCYEKFFAS 85 (90)
T ss_dssp CSCBCCEEECTTTCCCBBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBCS-SSCBEESSSCEECHHHHHHHTSC
T ss_pred chhhhcccCCCCCCCCCCccCCCEecc--eEEEECCccccccCCccCCCCCCCC-CCEeEeECCEEECHHHHHHHcCC
Confidence 344566777788899999999999974 4778999999999999999999996 57799999999999999999864
No 84
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.2e-15 Score=105.52 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=59.5
Q ss_pred cccCCCCCCCCCcccC--CCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLP--HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~--~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++|+++|.+|+++|.+ .+.++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~ 69 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV-GKGFLTQNKEIFCQKCGSGMDTD 69 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS-SSCEEEETTEEEETTTTCCCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC-CCceEeECCEEECHHHhhhhhCC
Confidence 4688999999999996 446888999999999999999999996 68899999999999999998865
No 85
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.2e-15 Score=104.85 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=58.1
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.+|+++|.+|+++|.+ .++.++++.||++||+|..|+.+|..+..|+.+++++||..||.++++.
T Consensus 2 s~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 2 SSGSSGCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CCSCCSCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCcCCcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 3688999999999986 3678999999999999999999997678899999999999999887753
No 86
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.51 E-value=2.4e-15 Score=122.75 Aligned_cols=55 Identities=29% Similarity=0.333 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 105 ~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
++.||.||.||..|+.+||..|+.++||+...+++ |++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 45688999999999999999999999999998877 89999999999999999984
No 87
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=8.3e-15 Score=103.97 Aligned_cols=64 Identities=19% Similarity=0.383 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCcccC--CCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 17 LYGVKCARCGDRLLP--HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~--~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
.++++|.+|+++|.+ .+.++.+.++.||++||+|..|+++|. +..|+.+++++||..||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV-GRGFLTERDDILCPDCGKDISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT-TSCCEECSSSEECHHHHHTCCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC-CCccEeECCEEEChhHcCcccC
Confidence 467899999999996 456888999999999999999999996 7889999999999999998875
No 88
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.51 E-value=2.4e-15 Score=103.35 Aligned_cols=49 Identities=22% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 111 RTILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 111 Rt~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
|+.||.+|+.+||..|+. ++||+...+++ |++++|+|||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 99999988877 99999999999999999984
No 89
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.51 E-value=1.6e-15 Score=105.16 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 115 TSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 115 t~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
|.+||.+||+.|..++||+..++++ |++++|+|||||||+|||+.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 6899999999999999999999888 99999999999999999984
No 90
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.50 E-value=1.1e-14 Score=101.65 Aligned_cols=63 Identities=22% Similarity=0.511 Sum_probs=57.0
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
++|+++|.+|+++|. + .++.+.++.||++||+|..|+++|. +..|+.+++++||..||.++|+
T Consensus 2 ~~~~~~C~~C~~~I~-~-~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 2 SMGVPICGACRRPIE-G-RVVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCCCEETTTTEECC-S-CEECCTTSBEETTTCBCTTTCCBCS-SSCCEEETTEEECHHHHHHHCS
T ss_pred CcCCCCCcccCCEec-c-eEEEECccccccCcCEECCCCCCCC-CCceEeECCcEECHHHHHHHhC
Confidence 467889999999999 3 3778999999999999999999996 6789999999999999999886
No 91
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.50 E-value=3.8e-15 Score=110.01 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhh
Q psy10849 106 GPKRPRTILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKS 158 (267)
Q Consensus 106 ~~kr~Rt~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~ 158 (267)
+.++.|+.||..|+.+||..|.. ++||+...+++ |++++|+|||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34567999999999999999999 99999988887 9999999999999999984
No 92
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.7e-14 Score=103.50 Aligned_cols=66 Identities=29% Similarity=0.676 Sum_probs=59.2
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
..++.+|.+|+++|.+.+.++.+.++.||.+||+|..|+++|.. ..|+.+++++||+.||.++|+.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~y~~~f~~ 73 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE-GLFYEFEGRKYCEHDFQMLFAP 73 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGG-GCSEEETTEEECHHHHHHHCCC
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCC-CCeEeECCeEeCHHHHHHHhhc
Confidence 45678999999999877788999999999999999999999974 4688999999999999998863
No 93
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-15 Score=103.82 Aligned_cols=49 Identities=6% Similarity=-0.063 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 111 RTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 111 Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
+..++.+|+.+||+.|+.++||+...|++ |++++|+|||||||||.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 34567999999999999999999998887 99999999999999998874
No 94
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=4.5e-14 Score=99.30 Aligned_cols=63 Identities=24% Similarity=0.560 Sum_probs=56.9
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+++++|.+|+++|.+. ++.+.++.||.+||+|..|+++|. +..|+.+++++||..||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCYKNFVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT--CEEETTEEECTTTTBCTTTCCBCT-TSCEEECSSCEEEHHHHHHHHTC
T ss_pred CCcCCCcccCCEeCcc--eEEECccccccCcCEECCCCCCCC-CCccEeECCEEECHHHhHHHhcC
Confidence 5678999999999853 577999999999999999999996 67899999999999999999874
No 95
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.47 E-value=7e-15 Score=107.65 Aligned_cols=52 Identities=17% Similarity=0.013 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhhhh
Q psy10849 109 RPRTILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSF 160 (267)
Q Consensus 109 r~Rt~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~ 160 (267)
+.|+.||..|+.+||..|.. ++||+...+++ |++++|+|||||||+|+|+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 34666999999999999999 99999988887 999999999999999999964
No 96
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.47 E-value=3.5e-14 Score=98.90 Aligned_cols=61 Identities=25% Similarity=0.601 Sum_probs=54.2
Q ss_pred cCCCCCCCCCcccCCCcEEEecCceee--cCCcccccccccCCCCCceEeeCCeecc-hhhHHHH
Q psy10849 18 YGVKCARCGDRLLPHEMVMRAQSHVYH--LPCFVCVICCQPLQKGEQFILRSGQLFC-RQDFEKE 79 (267)
Q Consensus 18 f~~~C~~C~~~I~~~e~~~~a~~~~wH--~~CF~C~~C~~~L~~g~~f~~~~~~lyC-~~cy~k~ 79 (267)
|+++|.+|+++|.+++.++.+.++.|| ++||+|..|+++|. +..|+.+++++|| ..||.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT-TSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC-CCceEEECCEEecCHHHhhhh
Confidence 577999999999975568889999999 99999999999996 7889999999999 8888764
No 97
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=5.2e-14 Score=99.21 Aligned_cols=63 Identities=22% Similarity=0.493 Sum_probs=56.7
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+|+++|.+|+++|.+. .+.+.++.||++||+|..|+++|. +..|+.+++++||..||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 65 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG--GVTYREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCFCDLYAS 65 (70)
T ss_dssp CCCCBCSSSCCBCCSS--EEESSSSEEETTTSBCSSSCCBCT-TSCCEESSSSEECHHHHHHHTCC
T ss_pred CCCCCCcccCCeeccc--eEEECccccCCCCCccCCCCCcCC-cCceEeeCCeEECHHHHHHHhcc
Confidence 5788999999999854 578999999999999999999995 67899999999999999998864
No 98
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.46 E-value=7.9e-15 Score=120.72 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhhhhhh
Q psy10849 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 104 ~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~ 161 (267)
..+.||.||.||..|+.+||+.|+.++||+...|++ |++++|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 345788999999999999999999999999998887 9999999999999999998654
No 99
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.45 E-value=4.6e-14 Score=110.82 Aligned_cols=65 Identities=26% Similarity=0.600 Sum_probs=57.4
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC-CCceEeeCCeecchhhHHHHHh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK-GEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~-g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
..+.++|.+|+++|.+. .++.+.++.||.+||+|..|+.+|.. |..|+.+++++||+.||.++||
T Consensus 58 ~~~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSS-SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCc-EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 34567999999999965 46789999999999999999999962 5789999999999999999985
No 100
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=9.6e-14 Score=97.88 Aligned_cols=63 Identities=25% Similarity=0.593 Sum_probs=55.9
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.+..+|..|+++|.+ .++.+.++.||++||+|..|+++|.. ..|+.+++++||+.||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~-~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLAD-IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSS-SCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCC-CccEeECCeEECHHHhhhhcCC
Confidence 356799999999985 36789999999999999999999974 5788899999999999999875
No 101
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=7.1e-15 Score=101.89 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHhh-hcCCCCChhhhhh------cCCCceeeecchhhhhhhhh
Q psy10849 116 SAQRRQFKSSF-EVSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSS 159 (267)
Q Consensus 116 ~~Ql~~L~~~f-~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~ 159 (267)
..|+.+||+.| ..++||+...|++ |+++||||||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45799999999 5789999988887 99999999999999999974
No 102
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=1.1e-13 Score=99.27 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=58.1
Q ss_pred ccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecch-hhHHHHHhh
Q psy10849 15 FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR-QDFEKEMYL 82 (267)
Q Consensus 15 ~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~-~cy~k~f~~ 82 (267)
...++++|.+|+++|..++ .+.+.++.||++||+|..|+++|. +..|+.+++++||. .||.++|+.
T Consensus 5 ~~~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~ 71 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAE-KVSSLGKDWHKFCLKCERCSKTLT-PGGHAEHDGKPFCHKPCYATLFGS 71 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTT-EEEETTEEEETTTCBCSSSCCBCC-TTSCEEETTEEECTTTHHHHHSCS
T ss_pred cCCCCCCCcCCCCEeECCe-EEEECCeEeeCCCCCCCCCCCccC-CCceEeECCEEecchHHHHHhccc
Confidence 4567889999999999765 456999999999999999999996 57799999999999 799998863
No 103
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=2.6e-13 Score=98.48 Aligned_cols=61 Identities=25% Similarity=0.655 Sum_probs=54.3
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.++|.+|+++|..++ ++.++++.||++||+|..|+.+|. + .|+.+++++||+.||.++|+.
T Consensus 15 ~~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~~~g~~yC~~~y~~~fg~ 75 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ-SLLALDKQWHVSCFKCQTCSVILT-G-EYISKDGVPYCESDYHAQFGS 75 (80)
T ss_dssp CSCCTTTCCCCSSSC-CEEETTEEECTTTCBCSSSCCBCS-S-CCEEETTEEECTTHHHHHTTC
T ss_pred CCCCcCcCCeeCCCe-EEEECCcccccccCCcCcCCCCcC-C-CeEEECCEEECHHHHHHHcCC
Confidence 458999999998765 567999999999999999999996 4 588999999999999999874
No 104
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=3.3e-13 Score=99.72 Aligned_cols=61 Identities=25% Similarity=0.606 Sum_probs=54.4
Q ss_pred cCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 18 f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
...+|.+|++.|.+ .++.+.++.||.+||+|..|++.|. +..|+.+++++||+.||.++|+
T Consensus 24 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp SCCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTT-TSCCEEETTEEECHHHHHHHSS
T ss_pred cCCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCC-CCCeEeECCEEECHHHHHHHhC
Confidence 34589999999996 3678999999999999999999996 4578889999999999999886
No 105
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.38 E-value=2.8e-13 Score=98.26 Aligned_cols=63 Identities=22% Similarity=0.645 Sum_probs=54.7
Q ss_pred cCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 18 f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
..++|.+|+++|...+ ++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 6 ~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 68 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGKKYGP 68 (81)
T ss_dssp --CBCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEEC-SSCCEEETTEEECSHHHHHHCC-
T ss_pred CCCcCcCcCccccCce-eEEeCCcccccccCccCCCCCCCC-CCCeEeeCCEEECHHHHHHHhCC
Confidence 4679999999998765 568999999999999999999996 45789999999999999999875
No 106
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.4e-13 Score=99.45 Aligned_cols=60 Identities=18% Similarity=0.532 Sum_probs=54.3
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
.++|.+|++.|.+. ++.+.++.||++||+|..|++.|. +..|+.+++++||+.||.++|+
T Consensus 15 ~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--FVKLRDRHRHPECYVCTDCGTNLK-QKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCSSSCCCCCSS--CEECSSCEECTTTTSCSSSCCCHH-HHCCEESSSCEECHHHHHHHHS
T ss_pred CCccccCCCCccCc--EEEECcceeCcCcCeeCCCCCCCC-CCCeEeECCEEECHHHHHHHhC
Confidence 46999999999963 778999999999999999999995 5678899999999999999986
No 107
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=4e-13 Score=99.70 Aligned_cols=65 Identities=23% Similarity=0.612 Sum_probs=56.6
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.....+|.+|++.|.+.+. +.+.++.||++||+|..|+.+|.. ..|+.+++++||..||.++|+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 12 APARETCVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSL-GTYASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSE-EECSSSEEETTTCBCTTTCCBCCT-TTCCCSSSCCCCHHHHHHHSCC
T ss_pred CCCCCcCccCCCccCCcee-EEECCCEECCCCCeeCCCCCCCCC-CCcEeECCEEECHHHHHHHhCC
Confidence 3456799999999997764 579999999999999999999974 4588899999999999999874
No 108
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=3.4e-13 Score=97.58 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=53.9
Q ss_pred cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 16 ~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
..+.++|.+|+++|.+ .++.++++.||++||+|..|+.+|. +.. +.+++++||..||.++|+.
T Consensus 12 ~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~-~~~-f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 12 GLGKYICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKELT-ADA-RELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCCBCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBCC-TTC-EEETTEEECHHHHHTTSCC
T ss_pred ccCCCCCccCCCEecc--eEEEECcceeCCCCCEeCCCCCccC-CCC-EeECCEEeCHHHHHHhCCC
Confidence 3456799999999993 3678999999999999999999996 444 4889999999999998764
No 109
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.36 E-value=2.9e-13 Score=102.11 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=49.9
Q ss_pred cccCCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCccccccc
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICC 54 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~ 54 (267)
+.+||++||+.||.++|+++|.+|+++|.++|.++.+.++.||++||+|..|+
T Consensus 49 ~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 49 VAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp EEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ECcCCEEEChhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 46899999999999999999999999999777889999999999999999986
No 110
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=6.9e-13 Score=102.52 Aligned_cols=63 Identities=21% Similarity=0.526 Sum_probs=56.4
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC-CCceEeeCCeecchhhHHHHHhh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK-GEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~-g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.++|.+|+++|.+. .++.+.++.||++||+|..|+.+|.. |..|+.+++++||+.||.++|+.
T Consensus 3 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp CBCBSSSCSCBCSS-EEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred CCCCcCCCCeeCCc-EEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 35899999999965 47889999999999999999999963 56899999999999999999986
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.35 E-value=6.7e-13 Score=100.07 Aligned_cols=65 Identities=20% Similarity=0.503 Sum_probs=58.4
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.++++|.+|+++|...+.++.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKILCNKCTTREDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTT-SSCCEEETTEEECHHHHTTCCCC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCC-cCeeECcCCEEEChhHhhhhcCC
Confidence 567899999999986446888999999999999999999995 67899999999999999998865
No 112
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=1.1e-12 Score=93.86 Aligned_cols=61 Identities=20% Similarity=0.489 Sum_probs=54.1
Q ss_pred CCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecch-hhHHHHHhh
Q psy10849 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR-QDFEKEMYL 82 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~-~cy~k~f~~ 82 (267)
++|.+|+++|..++ .+.+.++.||++||+|..|+.+|. +..|+.+++++||. .||.++|+.
T Consensus 1 p~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~ 62 (76)
T 1iml_A 1 PKCPKCDKEVYFAE-RVTSLGKDWHRPCLKCEKCGKTLT-SGGHAEHEGKPYCNHPCYSAMFGP 62 (76)
T ss_dssp CBCTTTSSBCCGGG-EEEETTEEEETTTCBCTTTCCBCC-TTTEEEETTEEEETTTHHHHHSSC
T ss_pred CcCCCCCCEEECce-EEEECCccccCCCCCccccCccCC-CCceECcCCeEeeCHHHHHHHhCc
Confidence 47999999998665 567999999999999999999996 45799999999999 699999874
No 113
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=3e-13 Score=98.52 Aligned_cols=62 Identities=27% Similarity=0.567 Sum_probs=52.9
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceE--eeCCeecchhhHHHHHhh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI--LRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~--~~~~~lyC~~cy~k~f~~ 82 (267)
..+|.+|++.|...+.+ .+.++.||.+||+|..|++.|. +..|+ .+++++||+.||.++|+.
T Consensus 15 ~~~C~~C~~~I~~~e~v-~a~~~~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SCBCSSSCCBCCTTTBC-CBTTBCCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCcccCCCcccceEE-EECCCeeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhhcC
Confidence 45899999999877655 4999999999999999999996 45566 368999999999988764
No 114
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=102.28 Aligned_cols=64 Identities=23% Similarity=0.545 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+|+++|.+|+++|.+++ ++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|+.
T Consensus 1 ~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~~ 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSILA-GEIYVMVNDKPVCKPCYVKNHAV 64 (126)
T ss_dssp -CCCBBTTTSSBCCSSC-EEEETTEEECGGGSBCTTTCCBCT-TSEEEEETTEEEEHHHHHHHSCC
T ss_pred CcCCCCccCCCEeCCce-EEeeCCCCccCCCCCcCCCCCCCC-cCEEEeECCEEechHHhCcCcCc
Confidence 36789999999999764 778999999999999999999996 67899999999999999999875
No 115
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=8e-13 Score=103.37 Aligned_cols=65 Identities=26% Similarity=0.562 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC-CCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK-GEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~-g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++.++|.+|+++|.+.+ ++.+.++.||++||+|..|+.+|.+ +..|+.+++++||+.||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp SCCCCBSSSSSCCCSSC-CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred CCCCCCcccCCEeCCcE-EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 46789999999999764 5779999999999999999999952 46799999999999999999985
No 116
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=3.6e-13 Score=94.51 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHhhh---cCCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 113 ILTSAQRRQFKSSFE---VSPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 113 ~ft~~Ql~~L~~~f~---~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
.|+.+|+.+|+..|. .++||+...+++ |++++|+|||||||+|+|+.....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 689999999999999 999999998887 999999999999999999865443
No 117
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=2.8e-13 Score=114.05 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh---------------------------cCCCceeeecchhhhh
Q psy10849 103 GRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM---------------------------NSKRAKNILTPNQRRQ 155 (267)
Q Consensus 103 ~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~---------------------------l~~~~v~vWFQNrRak 155 (267)
..++.||.||.|+..|+.+||+.|+.++||+...|++ |++.+|+|||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4567899999999999999999999999999877765 5678899999999999
Q ss_pred hhh
Q psy10849 156 FKS 158 (267)
Q Consensus 156 ~k~ 158 (267)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 118
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.25 E-value=8.2e-12 Score=98.41 Aligned_cols=62 Identities=21% Similarity=0.588 Sum_probs=55.9
Q ss_pred CCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC-CCceEeeCCeecchhhHHHHHhh
Q psy10849 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK-GEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~-g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++|.+|+++|.+. .++.|+++.||++||+|..|+.+|.. |..|+.+++++||+.||.++|+.
T Consensus 3 ~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 65 (131)
T 2xjy_A 3 LTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ 65 (131)
T ss_dssp CBBTTTCCBCCSS-EEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC
T ss_pred ccCcCCCCEeCCc-EEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC
Confidence 5899999999965 46789999999999999999999963 57899999999999999999985
No 119
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.22 E-value=1e-11 Score=103.52 Aligned_cols=75 Identities=23% Similarity=0.452 Sum_probs=63.4
Q ss_pred CCcccCccccc---cccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 5 NSHVSCHPRGF---RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 5 dg~~yC~~cy~---~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
++..||...+. ....++|.+|+++|.+. .++.+.++.||++||+|..|+.+|. +..| .+++++||+.||.++|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~ 119 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFG 119 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCS-EEEEETTEEECSSTTSCTTTCCCCS-SCCE-EETTEEECHHHHHHTTS
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCc-eeEEecCCeEccccCccCCCCCccC-CCce-eECCEeeecCccccccc
Confidence 56678988775 44456999999999975 4678999999999999999999996 4445 68999999999999987
Q ss_pred h
Q psy10849 82 L 82 (267)
Q Consensus 82 ~ 82 (267)
.
T Consensus 120 ~ 120 (182)
T 2jtn_A 120 T 120 (182)
T ss_dssp C
T ss_pred c
Confidence 5
No 120
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.19 E-value=8.9e-12 Score=104.48 Aligned_cols=65 Identities=26% Similarity=0.590 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC-CCceEeeCCeecchhhHHHHHhh
Q psy10849 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK-GEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 17 ~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~-g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
++.++|.+|+++|.+. .++.|+++.||++||+|..|+.+|.. |..|+.+++++||+.||.++|+.
T Consensus 3 l~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~ 68 (188)
T 1rut_X 3 LSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (188)
T ss_dssp -CCCBBTTTCCBCCCS-EEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC
T ss_pred CCCCcCccCCCEeCCc-eeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccccccc
Confidence 4567999999999965 46789999999999999999999964 57899999999999999999985
No 121
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.14 E-value=7.7e-12 Score=106.50 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh---------------------------cCCCceeeecchhhh
Q psy10849 102 DGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM---------------------------NSKRAKNILTPNQRR 154 (267)
Q Consensus 102 ~~~~~~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~---------------------------l~~~~v~vWFQNrRa 154 (267)
...++.||.||.|+..|+.+|++.|+.++||+...|++ |++.+|+|||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34677899999999999999999999999999888876 256789999999998
Q ss_pred hh
Q psy10849 155 QF 156 (267)
Q Consensus 155 k~ 156 (267)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 122
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5e-12 Score=88.10 Aligned_cols=40 Identities=5% Similarity=-0.006 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhh
Q psy10849 116 SAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQ 155 (267)
Q Consensus 116 ~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak 155 (267)
.+|+..||++|+.+++|+..++++ |++++|||||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 578999999999999999988887 9999999999999984
No 123
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.13 E-value=1e-11 Score=76.06 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.3
Q ss_pred Cceeeecchhhhhhhhhhhhcc
Q psy10849 143 RAKNILTPNQRRQFKSSFEISS 164 (267)
Q Consensus 143 ~~v~vWFQNrRak~k~~~~~~~ 164 (267)
+||+||||||||||||......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6899999999999999877643
No 124
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.08 E-value=7.8e-11 Score=97.04 Aligned_cols=61 Identities=28% Similarity=0.642 Sum_probs=53.1
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.++|.+|+++|.+. .++.++++.||++||+|..|+.+|. +..| .++|++||+.||.++|+.
T Consensus 6 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~~ 66 (169)
T 2rgt_A 6 IPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFGT 66 (169)
T ss_dssp -CBBSSSSSBCCSS-SCEECSSCEECTTTSBCTTTCCBCC-SCCE-ESSSCEECHHHHHHHHSC
T ss_pred CCccccCCCccCCc-EEEEECCcEEccccCccCCCCCcCC-CCCc-ccCCeeeecccccccccc
Confidence 46899999999975 4678999999999999999999996 3444 789999999999999976
No 125
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.08 E-value=8.6e-11 Score=98.73 Aligned_cols=62 Identities=21% Similarity=0.632 Sum_probs=55.1
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
.++|.+|+++|..++. +.+.++.||++||+|..|+.+|. +..|+.+++++||+.||.++|+.
T Consensus 7 ~~~C~~C~~~I~~~~~-v~a~g~~wH~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEE-VQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp CEECTTTCCEECSSCC-EEETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCcCccCCCeecceeE-EEeCCceecCCCCcCcccCCcCC-CCeeEecCCEeeChhhhHhhcCc
Confidence 3589999999987664 56999999999999999999996 45799999999999999999974
No 126
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.00 E-value=2.1e-11 Score=112.76 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCChhhhhh------cCCCceeeecchhhhhhh
Q psy10849 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQRRQFK 157 (267)
Q Consensus 107 ~kr~Rt~ft~~Ql~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNrRak~k 157 (267)
.++.|+.|+..|+.+||+.|+.++||+...|++ |+++||||||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 356688999999999999999999999999888 999999999999999986
No 127
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.90 E-value=2.1e-10 Score=84.24 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHhhhc---CCCCChhhhhh------cCCCceeeecchhhhhhhhhhhhc
Q psy10849 112 TILTSAQRRQFKSSFEV---SPKPCRKVSTM------NSKRAKNILTPNQRRQFKSSFEIS 163 (267)
Q Consensus 112 t~ft~~Ql~~L~~~f~~---~~~p~~~~r~~------l~~~~v~vWFQNrRak~k~~~~~~ 163 (267)
..|+.+++.+|+.-|.. ++||+..++++ |+++||++||||||+|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 47899999999999977 89999998887 999999999999999999876544
No 128
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=8.9e-10 Score=85.91 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=52.4
Q ss_pred cccCCcccCccccccccCC--CCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHH
Q psy10849 2 TSHNSHVSCHPRGFRLYGV--KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKE 79 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~--~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~ 79 (267)
|.+||++||+.||.++|++ +|.+|+++|.+++ + .+.++ ..| .|+.|+++++++||..||.+.
T Consensus 50 ~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~-~-~~~g~-------------~~l-~g~~f~~~~~~~yC~~~~~~~ 113 (122)
T 1m3v_A 50 YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD-V-MVVGE-------------PTL-MGGEFGDEDERLITRLENTQF 113 (122)
T ss_dssp EEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE-S-SSSSS-------------SSC-CSCTTCCTTCCCCEECTTTTT
T ss_pred EEECCeeecHHHHHHHcCCCCccccCCCCcCchh-e-EEcCC-------------cCC-CCCccEecCCEeEccCcchhc
Confidence 6799999999999999999 9999999998753 2 23332 234 589999999999999999876
Q ss_pred Hh
Q psy10849 80 MY 81 (267)
Q Consensus 80 f~ 81 (267)
+.
T Consensus 114 ~~ 115 (122)
T 1m3v_A 114 DA 115 (122)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 129
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.42 E-value=2.7e-08 Score=76.50 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=47.9
Q ss_pred cccCCcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
|.+||++||+.||.++|+++|..|.. + .+| .|+..+..|+.|+++++++||..||.++.+
T Consensus 48 ~~~~g~~yC~~~y~~~f~~~c~~c~~----~-~~~---------------~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 48 YYKLGRKLCRRDYLRLGGSGGHMGSG----G-DVM---------------VVGEPTLMGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp CCBTTBCCCHHHHHHHHTSCCSSCBS----C-SCC---------------CSSCSSTTSSBCCCSSSCCCEEEECTTCCC
T ss_pred EEECCeeechHHHHHHhCcccCcCCC----C-cee---------------EcCCccCCCCeeEEcCCEeecchhhhcccc
Confidence 68999999999999999999998862 1 132 144665568999999999999999877543
No 130
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.55 E-value=1.8e-05 Score=46.36 Aligned_cols=29 Identities=38% Similarity=0.846 Sum_probs=25.5
Q ss_pred CCCCCCCCCcccCCCcEEEecCceeecCCc
Q psy10849 19 GVKCARCGDRLLPHEMVMRAQSHVYHLPCF 48 (267)
Q Consensus 19 ~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF 48 (267)
..+|..|++.|...|.++ +.++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN-CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC-SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE-ECCeEecccCC
Confidence 358999999999887665 89999999998
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=96.64 E-value=0.00039 Score=48.75 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred cccCCcccCc-cccccccCCCCCCCCCccc
Q psy10849 2 TSHNSHVSCH-PRGFRLYGVKCARCGDRLL 30 (267)
Q Consensus 2 ~~~dg~~yC~-~cy~~~f~~~C~~C~~~I~ 30 (267)
+.+||++||+ .||.++|+++|.+|++.+.
T Consensus 43 ~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 43 AEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp EEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred ECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5689999999 6999999999999997664
No 132
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=96.41 E-value=0.00044 Score=49.12 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=16.8
Q ss_pred cccCCcccCccccccccCCCCCCCCCcc
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCGDRL 29 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~~~I 29 (267)
+.+||++||+.||.++|+++|.+|++..
T Consensus 50 ~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 50 AIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp EEETTEEECSHHHHHHCC----------
T ss_pred EeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 5689999999999999999999999764
No 133
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.05 E-value=0.0017 Score=45.44 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=22.7
Q ss_pred cccCCcccCccccccccCCCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARCG 26 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C~ 26 (267)
+.+||++||+.||.++|+++|..+.
T Consensus 51 ~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 51 LTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp EEETTEEEETTTTCCCCCCSSSSSC
T ss_pred EeECCEEECHHHhhhhhCCcCCCCC
Confidence 4689999999999999999998875
No 134
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.11 E-value=0.0033 Score=42.97 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.6
Q ss_pred cccCCcccCccccccccCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCAR 24 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~ 24 (267)
+.+||++||+.||.++|+++|.+
T Consensus 47 ~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 47 TAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp EECSSCEEEHHHHHHHHTCSCCC
T ss_pred EeECCEEECHHHhHHHhcCCCCC
Confidence 46899999999999999999964
No 135
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.07 E-value=0.0043 Score=42.46 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred cccCCcccCccccccccCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCAR 24 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~ 24 (267)
+.+||++||+.||.++|+++|..
T Consensus 47 ~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 47 TARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp EESSSSEECHHHHHHHTCCCCTT
T ss_pred EeeCCeEECHHHHHHHhccccCC
Confidence 46899999999999999999964
No 136
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.01 E-value=0.0037 Score=42.98 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=20.6
Q ss_pred cccCCcccCccccccccCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCAR 24 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~ 24 (267)
+.+||++||+.||.++|+++|+.
T Consensus 49 ~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 49 VPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp EEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCcCCeEECHHHHHHHccCcCCC
Confidence 46899999999999999999964
No 137
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.91 E-value=0.0041 Score=42.73 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=20.6
Q ss_pred cccCCcccCccccccccCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCAR 24 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~ 24 (267)
+.+||++||+.||.++|+++|..
T Consensus 49 ~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 49 IPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp EEETTEEEEHHHHHHHTSSCCCC
T ss_pred CccCCeEECHHHHhHHhCCCCCC
Confidence 46899999999999999999964
No 138
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.51 E-value=0.011 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred cccCCcccCccccccccCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCA 23 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~ 23 (267)
|.+||++||+.||.++|+++|.
T Consensus 58 ~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 58 ASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp CCSSSCCCCHHHHHHHSCCCSC
T ss_pred EeECCEEECHHHHHHHhCCCcC
Confidence 6789999999999999999997
No 139
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=91.84 E-value=0.03 Score=42.74 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=19.7
Q ss_pred CcccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCc
Q psy10849 6 SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCF 48 (267)
Q Consensus 6 g~~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF 48 (267)
++.|-..|| +|..|++.|..++.++...++.|-..|+
T Consensus 29 ~~~~H~~CF------~C~~C~~~L~~g~~f~~~~g~~yC~~cy 65 (123)
T 2l3k_A 29 DKVYHLECF------KCAACQKHFSVGDRYLLINSDIVCEQDI 65 (123)
T ss_dssp SCCCCTTTC------BCTTTCCBCCTTCEEEECSSSEEEGGGH
T ss_pred CcccccccC------ccccCCCCCCCCCcEEeeCCEEEcHHHh
Confidence 444555554 5667777764333344445566655554
No 140
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.74 E-value=0.034 Score=37.97 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=19.1
Q ss_pred cccCCcccCccccccccCCCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCARC 25 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~~C 25 (267)
|.+||++||+.||.++|+ +|..+
T Consensus 49 ~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 49 YAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp EESSSCEEEHHHHHHHHH-TCSSC
T ss_pred EeeCCeEECHHHHHHHHc-cCCCC
Confidence 578999999999999885 66654
No 141
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.89 E-value=0.059 Score=36.58 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.6
Q ss_pred cccCCcccCccccccccCCCCC
Q psy10849 2 TSHNSHVSCHPRGFRLYGVKCA 23 (267)
Q Consensus 2 ~~~dg~~yC~~cy~~~f~~~C~ 23 (267)
+.+||++||+.||.++|++++.
T Consensus 47 ~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 47 VKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp EEETTEEECHHHHHHHHCCCSC
T ss_pred EeECCeEECHHHhhhhcCCCCC
Confidence 3579999999999999987653
No 142
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.55 E-value=2.9 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.613 Sum_probs=18.3
Q ss_pred CCCCCCCcccCCCcEEEecCceeecCCc
Q psy10849 21 KCARCGDRLLPHEMVMRAQSHVYHLPCF 48 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~~~~wH~~CF 48 (267)
+|..|++.|..++......++.|...|+
T Consensus 33 ~C~~C~~~L~~~~~f~~~~~~~yC~~C~ 60 (73)
T 1wig_A 33 LCVRCGQMFAEGEEMYLQGSSIWHPACR 60 (73)
T ss_dssp CCSSSCCCCCSSCCCEEETTEEECTTHH
T ss_pred EeCCCCCCCCCCCeeEeeCCEEEChHHC
Confidence 7899999997443444456677755444
No 143
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.63 E-value=3.5 Score=31.01 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=15.7
Q ss_pred cccccCCCCCCCCCcccCCCcEE
Q psy10849 14 GFRLYGVKCARCGDRLLPHEMVM 36 (267)
Q Consensus 14 y~~~f~~~C~~C~~~I~~~e~~~ 36 (267)
|.+.--..|..|++.|.-++..+
T Consensus 15 YAKS~RA~Ck~Ck~kI~KgeLRi 37 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKENFRL 37 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSSEEE
T ss_pred EeCCCCCCchhhCCccCCCCEEE
Confidence 43333348999999998876444
No 144
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=59.71 E-value=3.9 Score=30.26 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=15.4
Q ss_pred cccccCCCCCCCCCcccCCCcEE
Q psy10849 14 GFRLYGVKCARCGDRLLPHEMVM 36 (267)
Q Consensus 14 y~~~f~~~C~~C~~~I~~~e~~~ 36 (267)
|.+.--..|..|++.|.-++..+
T Consensus 20 yAkS~Ra~Ck~C~~kI~KgelRi 42 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSLRM 42 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCEEE
T ss_pred EeCCCCCcchhhCCccCCCCEEE
Confidence 33333348999999998876433
No 145
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.87 E-value=3.6 Score=30.59 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=46.7
Q ss_pred CcccCcccccccc--CCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCCC----CCc-eEeeCCeecchhhHHH
Q psy10849 6 SHVSCHPRGFRLY--GVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK----GEQ-FILRSGQLFCRQDFEK 78 (267)
Q Consensus 6 g~~yC~~cy~~~f--~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~~----g~~-f~~~~~~lyC~~cy~k 78 (267)
|..||..|..+.+ ...|..|.+.+...+ +... ..-.+=+.|..|...+.. +.. ....-|..||..|..+
T Consensus 33 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~-l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 108 (133)
T 4ap4_A 33 GHVFCSQCLRDSLKNANTCPTCRKKINHKR-YHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 108 (133)
T ss_dssp CCEEEHHHHHHHHTTCSBCTTTCCBCTTTC-EEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH
T ss_pred CChhhHHHHHHHHHhCCCCCCCCCcCcccc-cccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHH
Confidence 6678888886543 348999999998653 2211 122344678888877642 111 3344689999999887
Q ss_pred HHhh
Q psy10849 79 EMYL 82 (267)
Q Consensus 79 ~f~~ 82 (267)
.+..
T Consensus 109 ~~~~ 112 (133)
T 4ap4_A 109 SLKN 112 (133)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6543
No 146
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.80 E-value=13 Score=25.65 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=27.3
Q ss_pred ccCCcccCcccccccc----CCCCCCCCCcccCCCcEE-EecCceeecCCc
Q psy10849 3 SHNSHVSCHPRGFRLY----GVKCARCGDRLLPHEMVM-RAQSHVYHLPCF 48 (267)
Q Consensus 3 ~~dg~~yC~~cy~~~f----~~~C~~C~~~I~~~e~~~-~a~~~~wH~~CF 48 (267)
.|.+.+||+.|-.... .-.|..|++.-.++++++ ..-+..||..|.
T Consensus 6 ~~~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl 56 (77)
T 2e6s_A 6 SGRNDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCL 56 (77)
T ss_dssp CCCCCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSS
T ss_pred cccCCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcCCCCcccccccc
Confidence 3567889998865431 115677877554443332 124578898875
No 147
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.19 E-value=2 Score=29.40 Aligned_cols=33 Identities=3% Similarity=-0.113 Sum_probs=24.8
Q ss_pred HHHHHhhhcCCCCChhhhhh------cCCCceeeecchh
Q psy10849 120 RQFKSSFEVSPKPCRKVSTM------NSKRAKNILTPNQ 152 (267)
Q Consensus 120 ~~L~~~f~~~~~p~~~~r~~------l~~~~v~vWFQNr 152 (267)
+.|+.+|.......-.+.+. |+-.+|+.||-.|
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 68899998887765443333 9999999999743
No 148
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=51.54 E-value=4.9 Score=30.31 Aligned_cols=17 Identities=18% Similarity=0.667 Sum_probs=13.1
Q ss_pred CCCCCCCCcccCCCcEE
Q psy10849 20 VKCARCGDRLLPHEMVM 36 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~ 36 (267)
..|..|++.|..++..+
T Consensus 39 A~Ck~C~~kI~KgeLRi 55 (116)
T 3od8_A 39 ASCKKCSESIPKDSLRM 55 (116)
T ss_dssp CBCTTTCCBCCTTSEEE
T ss_pred ccCcccCCccCCCCEEE
Confidence 47999999998776443
No 149
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=49.09 E-value=5.4 Score=29.81 Aligned_cols=17 Identities=12% Similarity=0.485 Sum_probs=12.8
Q ss_pred CCCCCCCCcccCCCcEE
Q psy10849 20 VKCARCGDRLLPHEMVM 36 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~ 36 (267)
..|..|++.|..++..+
T Consensus 20 a~Ck~C~~kI~Kg~lRi 36 (111)
T 3odc_A 20 STCKGCMEKIEKGQVRL 36 (111)
T ss_dssp CBCTTTCCBCCTTCEEE
T ss_pred ccccccCCCccCCceEE
Confidence 37999999998776333
No 150
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.36 E-value=20 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=17.4
Q ss_pred CCCCCCCcccCCCcEEEecCceeecCCc
Q psy10849 21 KCARCGDRLLPHEMVMRAQSHVYHLPCF 48 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~~~~wH~~CF 48 (267)
+|..|++.|.+. ..+...++.|...|+
T Consensus 45 ~C~~C~~~L~~~-~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 45 RCCRCQRSLADE-PFTCQDSELLCNDCY 71 (82)
T ss_dssp BCTTTCCBCSSC-CEEEETTEEEETTTS
T ss_pred eecCCCCccCCC-ccEeeCCEEECHHHH
Confidence 688888888754 344456666655554
No 151
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.10 E-value=8.7 Score=26.83 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=6.7
Q ss_pred CCCCCCCcccCC
Q psy10849 21 KCARCGDRLLPH 32 (267)
Q Consensus 21 ~C~~C~~~I~~~ 32 (267)
+|..|++.|...
T Consensus 53 ~C~~C~~~L~~~ 64 (90)
T 2dar_A 53 NCAHCKNTMAYI 64 (90)
T ss_dssp BCSSSCCBCSSS
T ss_pred ccCCCCCCCCCC
Confidence 456666666543
No 152
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=44.77 E-value=11 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=19.9
Q ss_pred CCCCCCCcccCCCcEEEec---CceeecCC
Q psy10849 21 KCARCGDRLLPHEMVMRAQ---SHVYHLPC 47 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~---~~~wH~~C 47 (267)
.|..|++++.+.+..+... ...||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 7999999988766566555 56778655
No 153
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.50 E-value=10 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=14.1
Q ss_pred CCCCCCCcccCCCcEEEecCceee
Q psy10849 21 KCARCGDRLLPHEMVMRAQSHVYH 44 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~~~~wH 44 (267)
+|..|++.|.....+ ...++.|-
T Consensus 53 ~C~~C~~~L~~~~~~-~~~g~~yC 75 (89)
T 1x64_A 53 VCADCNLNLKQKGYF-FVEGELYC 75 (89)
T ss_dssp CCSSSCCCTTTSCCE-EETTEEEC
T ss_pred EecCCCCCCCCCCeE-eECCEEEC
Confidence 578888888765333 34555553
No 154
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=43.73 E-value=7 Score=32.29 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=23.3
Q ss_pred cccccccccCCCCCceEeeCCeecchhhHHH
Q psy10849 48 FVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78 (267)
Q Consensus 48 F~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k 78 (267)
..|..|+..... ..-...+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~-~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYE-ADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEG-GGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhh-cceeeeCCcEEChhhhcc
Confidence 469999988753 344566899999999975
No 155
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=43.32 E-value=7.1 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.600 Sum_probs=12.5
Q ss_pred CCCCCCCcccCCCcEE
Q psy10849 21 KCARCGDRLLPHEMVM 36 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~ 36 (267)
.|..|++.|.-++..+
T Consensus 17 ~Ck~C~~kI~KgeLRi 32 (117)
T 1uw0_A 17 GCKKCKEKIVKGVCRI 32 (117)
T ss_dssp ECTTSSCEECTTCEEE
T ss_pred cchhhCcccCCCCeEE
Confidence 7999999998776443
No 156
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.96 E-value=12 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCCCCcccCCCcEE-EecCceeecCCc
Q psy10849 21 KCARCGDRLLPHEMVM-RAQSHVYHLPCF 48 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~-~a~~~~wH~~CF 48 (267)
+|..|++.|..++... ...++.|...|+
T Consensus 43 ~C~~C~~~L~~g~~f~~~~~~~~~C~~c~ 71 (81)
T 1x6a_A 43 ACMSCKVIIEDGDAYALVQHATLYCGKCH 71 (81)
T ss_dssp BCTTTCCBCCTTSCEEECSSSCEEEHHHH
T ss_pred CccCCCCccCCCCcEEEeeCCEEECHHHH
Confidence 6888999986543343 245566644443
No 157
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=42.71 E-value=11 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.6
Q ss_pred eEeeCCeecchhhHHHHHh
Q psy10849 63 FILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 63 f~~~~~~lyC~~cy~k~f~ 81 (267)
|...+-+++|..||++.-.
T Consensus 22 ~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp BCCTTTTTSCHHHHHHHHT
T ss_pred EEEecCccchHHHHHHHhh
Confidence 3345889999999998643
No 158
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=40.70 E-value=9.4 Score=32.08 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=21.9
Q ss_pred cccccCCCCCCCCCcccCCCcEEEec----------CceeecCCcc
Q psy10849 14 GFRLYGVKCARCGDRLLPHEMVMRAQ----------SHVYHLPCFV 49 (267)
Q Consensus 14 y~~~f~~~C~~C~~~I~~~e~~~~a~----------~~~wH~~CF~ 49 (267)
|.+.--..|..|++.|..++..+... ...+|..||.
T Consensus 34 yAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~ 79 (223)
T 4av1_A 34 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 79 (223)
T ss_dssp ECSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHT
T ss_pred EecCCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhh
Confidence 33333347999999998776443211 1245778875
No 159
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.78 E-value=18 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=15.7
Q ss_pred CCCCCCCcccCCCcEE-EecCceeecCCc
Q psy10849 21 KCARCGDRLLPHEMVM-RAQSHVYHLPCF 48 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~-~a~~~~wH~~CF 48 (267)
+|..|++.|....... ...++.|-..||
T Consensus 44 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y 72 (82)
T 2co8_A 44 RCHTCEATLWPGGYEQHPGDGHFYCLQHL 72 (82)
T ss_dssp BCSSSCCBCCTTSEECCTTTCCCEETTTC
T ss_pred EEcCCCCCcCCCceeEeCcCCEEEChHHH
Confidence 6888888887653221 124555544443
No 160
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=37.62 E-value=20 Score=23.68 Aligned_cols=26 Identities=42% Similarity=0.897 Sum_probs=17.3
Q ss_pred cccccccccCCCCCceEeeC--Ceecch
Q psy10849 48 FVCVICCQPLQKGEQFILRS--GQLFCR 73 (267)
Q Consensus 48 F~C~~C~~~L~~g~~f~~~~--~~lyC~ 73 (267)
..|..|++.|..|...+-+. -++||.
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS 48 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCS 48 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESS
T ss_pred cChhhccchhhcCceeeeecCchhheec
Confidence 35778888887776655553 467773
No 161
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.63 E-value=12 Score=28.83 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=12.7
Q ss_pred CCCCCCCCcccCCCcE
Q psy10849 20 VKCARCGDRLLPHEMV 35 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~ 35 (267)
..|..|+..|.-++..
T Consensus 28 A~CK~C~~kI~KgeLR 43 (134)
T 2cs2_A 28 STCKGCMEKIEKGQVR 43 (134)
T ss_dssp CBCSSSCCBCCTTSEE
T ss_pred ccchhcCCcccCCCeE
Confidence 3799999999877643
No 162
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=34.56 E-value=30 Score=22.94 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=26.6
Q ss_pred CCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 46 PCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 46 ~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
+-|.|..|...+. +.....-|..||..|..+.+.
T Consensus 7 ~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 7 EYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHT
T ss_pred ccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHH
Confidence 3478999998884 456666799999999888774
No 163
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=33.92 E-value=25 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=19.4
Q ss_pred ccccccccCCCCCceEeeCCeecc-hhhH
Q psy10849 49 VCVICCQPLQKGEQFILRSGQLFC-RQDF 76 (267)
Q Consensus 49 ~C~~C~~~L~~g~~f~~~~~~lyC-~~cy 76 (267)
.|..|+..+. ...-+.++|+.|| +.|.
T Consensus 9 aC~~C~c~Vs-~~eai~~dGK~YCSe~Ca 36 (55)
T 1jjd_A 9 ACEPCLCNVD-PSKAIDRNGLYYCSEACA 36 (55)
T ss_dssp SSTTCCCCBC-TTTSEESSSCEESSHHHH
T ss_pred cCCCCeeEec-hHHhhhcCCeEEehHHHH
Confidence 4777888775 4566777999998 6663
No 164
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.88 E-value=10 Score=32.11 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCCCCCCCcccCCCcEEEecCceeecCCc----------ccccccccC
Q psy10849 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCF----------VCVICCQPL 57 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~~a~~~~wH~~CF----------~C~~C~~~L 57 (267)
..|..|...|..+..... -+..||..|+ .|..|+..+
T Consensus 181 ~~C~iC~~iv~~g~~C~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CBCTTTCSBCSSCEECSS-SCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CcCcchhhHHhCCcccCc-cChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 367777777765411111 3456787776 566666665
No 165
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=33.46 E-value=6.2 Score=30.35 Aligned_cols=39 Identities=5% Similarity=-0.064 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhhhcCCCCChhhhhh-----cCCCceeeecc
Q psy10849 112 TILTSAQRRQFKSSFEVSPKPCRKVSTM-----NSKRAKNILTP 150 (267)
Q Consensus 112 t~ft~~Ql~~L~~~f~~~~~p~~~~r~~-----l~~~~v~vWFQ 150 (267)
..++++.|..|.+.-...++|.++.+.+ |.+-+|+.|.|
T Consensus 17 ~tl~eeeL~rLl~lSheik~P~IpLksel~vEiLEkG~VRfWlQ 60 (142)
T 2jtd_A 17 GSHMEEEMKRLLALSQEHKFPTVPTKSELAVEILEKGQVRFWMQ 60 (142)
T ss_dssp ----CCCSHHHHHCCCCCCCSSCSSSCEEEEEEETTTEEEEEEE
T ss_pred ceeCHHHHHHHHHhhhhccCCcccchhhhhHHHHhcCcEEEEEE
Confidence 4567778888888888889999888877 78889999988
No 166
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.41 E-value=15 Score=23.79 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=4.4
Q ss_pred ccccccccC
Q psy10849 49 VCVICCQPL 57 (267)
Q Consensus 49 ~C~~C~~~L 57 (267)
.|-.|...+
T Consensus 52 ~CP~Cr~~~ 60 (66)
T 2ecy_A 52 KCTACQESI 60 (66)
T ss_dssp CCTTTCCCC
T ss_pred CCCCCCcCC
Confidence 344555554
No 167
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=31.85 E-value=15 Score=25.26 Aligned_cols=9 Identities=33% Similarity=1.076 Sum_probs=4.2
Q ss_pred ccccccccC
Q psy10849 49 VCVICCQPL 57 (267)
Q Consensus 49 ~C~~C~~~L 57 (267)
.|-.|.+.+
T Consensus 52 ~CP~CR~~~ 60 (78)
T 1e4u_A 52 LCPACRKPY 60 (78)
T ss_dssp BCTTTCCBC
T ss_pred CCCCCCCcc
Confidence 444444444
No 168
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.40 E-value=26 Score=25.60 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=5.8
Q ss_pred cccccccccC
Q psy10849 48 FVCVICCQPL 57 (267)
Q Consensus 48 F~C~~C~~~L 57 (267)
..|-.|...+
T Consensus 56 ~~CP~Cr~~~ 65 (117)
T 1jm7_B 56 TGCPVCYTPA 65 (117)
T ss_dssp TBCSSSCCBC
T ss_pred CCCcCCCCcC
Confidence 4566666665
No 169
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.84 E-value=17 Score=23.90 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=14.4
Q ss_pred ccCCcccCccccccccCC
Q psy10849 3 SHNSHVSCHPRGFRLYGV 20 (267)
Q Consensus 3 ~~dg~~yC~~cy~~~f~~ 20 (267)
.+++...|.-|+..+|+.
T Consensus 5 ~~~d~~~C~iC~KTKFAD 22 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFAD 22 (62)
T ss_dssp CSSCCCCCSSSSCSCCCS
T ss_pred ccCCcchhhhhccceecc
Confidence 357778899999888876
No 170
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.14 E-value=1.6e+02 Score=20.91 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=7.4
Q ss_pred CCCCCCCCCccc
Q psy10849 19 GVKCARCGDRLL 30 (267)
Q Consensus 19 ~~~C~~C~~~I~ 30 (267)
+..|..|+..|.
T Consensus 16 ~qiCqiCGD~VG 27 (93)
T 1weo_A 16 GQFCEICGDQIG 27 (93)
T ss_dssp SCBCSSSCCBCC
T ss_pred CCccccccCccc
Confidence 346777776664
No 171
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.46 E-value=30 Score=22.14 Aligned_cols=8 Identities=50% Similarity=1.169 Sum_probs=4.0
Q ss_pred cccccccC
Q psy10849 50 CVICCQPL 57 (267)
Q Consensus 50 C~~C~~~L 57 (267)
|-.|...+
T Consensus 46 CP~Cr~~~ 53 (65)
T 1g25_A 46 CPECGTPL 53 (65)
T ss_dssp CTTTCCCC
T ss_pred CCCCCCcc
Confidence 44455554
No 172
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.31 E-value=47 Score=20.92 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=25.0
Q ss_pred CcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 47 CFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 47 CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
-+.|.+|...+. ....+.-|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQ--KPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHH
Confidence 367888888884 445555689999999888765
No 173
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.06 E-value=61 Score=21.24 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=23.5
Q ss_pred CceeecCCccccccccc-CCCCCceEee--CCeecchhhHHHH
Q psy10849 40 SHVYHLPCFVCVICCQP-LQKGEQFILR--SGQLFCRQDFEKE 79 (267)
Q Consensus 40 ~~~wH~~CF~C~~C~~~-L~~g~~f~~~--~~~lyC~~cy~k~ 79 (267)
..++|. ..|..|+.. +. |..|.-. .+.-+|..||.+.
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~-G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMM-GFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSC-SCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCccee-cceEEecCCCCchhHHHHHhCC
Confidence 345565 677888764 53 5555443 2566899998763
No 174
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.49 E-value=16 Score=25.06 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCCCCCCcccCCCcEEEecCceeecCCc
Q psy10849 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCF 48 (267)
Q Consensus 20 ~~C~~C~~~I~~~e~~~~a~~~~wH~~CF 48 (267)
..|+-|...|..++... .-+..||..|+
T Consensus 16 ~~C~IC~~~i~~g~~C~-~C~h~fH~~Ci 43 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE-TCGIRMHLPCV 43 (74)
T ss_dssp CBCSSSCCBCSSSEECS-SSCCEECHHHH
T ss_pred CcCcchhhHcccCCccC-CCCchhhHHHH
Confidence 36778887776542111 23455776665
No 175
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.38 E-value=50 Score=23.10 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=28.1
Q ss_pred CcccccccccCCCCCceEe-eCCeecchhhHHHHHhhh
Q psy10849 47 CFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKEMYLM 83 (267)
Q Consensus 47 CF~C~~C~~~L~~g~~f~~-~~~~lyC~~cy~k~f~~~ 83 (267)
-|.|..|...+. +.+.. ..|..||+.|-.+.+...
T Consensus 7 ~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 7 GFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp CCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHH
T ss_pred EeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHc
Confidence 378999999884 67777 489999999988877643
No 176
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=24.80 E-value=32 Score=25.59 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=21.3
Q ss_pred HHHHhhhcCCCCChh-hhhhcCCCceeeecchhhhhhhhhhhh
Q psy10849 121 QFKSSFEVSPKPCRK-VSTMNSKRAKNILTPNQRRQFKSSFEI 162 (267)
Q Consensus 121 ~L~~~f~~~~~p~~~-~r~~l~~~~v~vWFQNrRak~k~~~~~ 162 (267)
.++-.|+.|+||... +|.. -.|||-+||+.++.
T Consensus 17 iIkiLyQSNPyP~peGTRqa---------RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 17 LIKFLYQSNPPPNPEGTRQA---------RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHSSCCCCCCCCTTT---------HHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCCchhh---------hHhHHHHHHHHHHH
Confidence 456678999998632 1111 14899999886543
No 177
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=24.13 E-value=24 Score=24.79 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=16.8
Q ss_pred CCCCCCCcccCCCcEEEecCceeecCCcccc
Q psy10849 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCV 51 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~ 51 (267)
+|.-|.+.+.+. ..++.-...-|+-||-|+
T Consensus 17 ~CtlC~erLEdt-HFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 17 CCTICHERLEDT-HFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSSSCSCCSST-TSEECSSCSSCEECHHHH
T ss_pred EeecchhhhccC-ceeeCCCccCCeeecccc
Confidence 566666666554 233444555566666654
No 178
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.09 E-value=51 Score=21.82 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=25.2
Q ss_pred CcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 47 CFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 47 CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
=+.|..|...+. ......-+..||..|..+.+..
T Consensus 19 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 19 EVTCPICLELLK--EPVSADCNHSFCRACITLNYES 52 (85)
T ss_dssp TTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHH
T ss_pred CCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHh
Confidence 367888888874 3445556899999999877654
No 179
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=24.07 E-value=53 Score=23.85 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCCCCCCcccCCCcEEEec---CceeecCCcccccccccCCCCCceE----eeCCeecchhhHHH
Q psy10849 21 KCARCGDRLLPHEMVMRAQ---SHVYHLPCFVCVICCQPLQKGEQFI----LRSGQLFCRQDFEK 78 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a~---~~~wH~~CF~C~~C~~~L~~g~~f~----~~~~~lyC~~cy~k 78 (267)
.|..|.++..+....|... ...||..|- .|.. ..+. ..++..+|..|-.+
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt~-~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMTE-SAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCCH-HHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccC-------CcCH-HHHHhhccCCCCCEECccccCc
Confidence 6899999975544444444 567787663 2210 1111 11356789999654
No 180
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=23.95 E-value=54 Score=19.86 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=13.0
Q ss_pred CCCCCCCcccCCCcEEEe--cCceeecCCc
Q psy10849 21 KCARCGDRLLPHEMVMRA--QSHVYHLPCF 48 (267)
Q Consensus 21 ~C~~C~~~I~~~e~~~~a--~~~~wH~~CF 48 (267)
.|.-|...+..++.++.. -+..||..|+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHH
Confidence 455565555443323222 3445555554
No 181
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=23.68 E-value=43 Score=22.42 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=20.4
Q ss_pred ccCccccccccCC-----CCCCCCCcccCCCcEEEe--cCceeecCCc
Q psy10849 8 VSCHPRGFRLYGV-----KCARCGDRLLPHEMVMRA--QSHVYHLPCF 48 (267)
Q Consensus 8 ~yC~~cy~~~f~~-----~C~~C~~~I~~~e~~~~a--~~~~wH~~CF 48 (267)
+||..|-... .- .|..|++.-.++ .++.- -+..||..|.
T Consensus 3 ~~c~~c~~~~-~w~C~~C~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl 48 (70)
T 3asl_A 3 PSCKHCKDDV-NRLCRVCACHLCGGRQDPD-KQLMCDECDMAFHIYCL 48 (70)
T ss_dssp CSCTTTTTCT-TSCCTTTSBTTTCCCSCGG-GEEECTTTCCEEEGGGS
T ss_pred cccccccCCC-CeECCCCCCcCCCCcCCCC-CEEEcCCCCCceecccC
Confidence 5666665432 12 355667654433 23322 3577898775
No 182
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.36 E-value=54 Score=22.29 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHhhhcCCCCChh-hhhhcCCCceeeecchhhhhhhhhhh
Q psy10849 120 RQFKSSFEVSPKPCRK-VSTMNSKRAKNILTPNQRRQFKSSFE 161 (267)
Q Consensus 120 ~~L~~~f~~~~~p~~~-~r~~l~~~~v~vWFQNrRak~k~~~~ 161 (267)
+.++-.|+.|+||... +|.. -.|||-+|++.+.
T Consensus 19 RiIkiLyQSNP~P~p~GTrqa---------RRNRRRRWR~RQr 52 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQA---------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchHH---------HHHHHHHHHHHHH
Confidence 3556678999998632 1111 1489999988654
No 183
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.34 E-value=54 Score=21.88 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=23.1
Q ss_pred cccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 48 FVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 48 F~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
+.|.+|...+. ..+...-+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQ--NPVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhc--CeeEccCCCHhHHHHHHHHHH
Confidence 56788887774 345555688899999887764
No 184
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=23.06 E-value=27 Score=25.24 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=21.3
Q ss_pred ccCccccccccCCCCCCCCCcccCCCcEEEecCceeecCCcccccccccCC
Q psy10849 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQ 58 (267)
Q Consensus 8 ~yC~~cy~~~f~~~C~~C~~~I~~~e~~~~a~~~~wH~~CF~C~~C~~~L~ 58 (267)
+.|.-|+.....+.-..|+...-.. .....+...-+.|-.|...+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~-----Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKP-----CFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHH-----HHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeEcCCCCHHhHH-----HHHHHHhHCcCCCCCCCcccC
Confidence 4566666554444333555543210 111111122356777887773
No 185
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.90 E-value=44 Score=20.81 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=4.3
Q ss_pred ccccccccC
Q psy10849 49 VCVICCQPL 57 (267)
Q Consensus 49 ~C~~C~~~L 57 (267)
.|-.|...+
T Consensus 39 ~CP~Cr~~~ 47 (56)
T 1bor_A 39 QCPICQAPW 47 (56)
T ss_dssp SCSSCCSSS
T ss_pred CCCcCCcEe
Confidence 344555544
No 186
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=22.59 E-value=32 Score=22.75 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=6.5
Q ss_pred cccccccccCC
Q psy10849 48 FVCVICCQPLQ 58 (267)
Q Consensus 48 F~C~~C~~~L~ 58 (267)
..|-.|...+.
T Consensus 54 ~~CP~Cr~~~~ 64 (79)
T 2egp_A 54 SSCPVCGISYS 64 (79)
T ss_dssp CCCSSSCCCCC
T ss_pred CcCCCCCCcCC
Confidence 45666666663
No 187
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.43 E-value=58 Score=22.34 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=28.3
Q ss_pred cCCcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 45 LPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 45 ~~CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
+.-|.|..|...+. +.+....|..||..|-.+-+.
T Consensus 12 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhc--CCeECCCCCEECHHHHHHHHh
Confidence 34589999999984 567777899999999887765
No 188
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=21.69 E-value=65 Score=21.14 Aligned_cols=33 Identities=15% Similarity=0.607 Sum_probs=24.6
Q ss_pred cccccccccCCCCCceEee-CCeecchhhHHHHHhh
Q psy10849 48 FVCVICCQPLQKGEQFILR-SGQLFCRQDFEKEMYL 82 (267)
Q Consensus 48 F~C~~C~~~L~~g~~f~~~-~~~lyC~~cy~k~f~~ 82 (267)
+.|.+|...+. ....+. -|..||..|..+.+..
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHh
Confidence 67888888774 455565 5899999998887654
No 189
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=54 Score=21.21 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=24.3
Q ss_pred CcccccccccCCCCCceEeeCCeecchhhHHHHHh
Q psy10849 47 CFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMY 81 (267)
Q Consensus 47 CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~ 81 (267)
-+.|.+|...+. ....+.-|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQ--KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccC--CeEEcCCCChhhHHHHHHHHH
Confidence 367888888874 445555689999999887653
No 190
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.03 E-value=52 Score=25.83 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCChhhhhhcCCCceeeecchhh
Q psy10849 113 ILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQR 153 (267)
Q Consensus 113 ~ft~~Ql~~L~~~f~~~~~p~~~~r~~l~~~~v~vWFQNrR 153 (267)
-+|++|+..|.+..+.. ..-.|-.||-||+
T Consensus 58 ~Lt~~ei~~l~~~i~~~-----------~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVHNP-----------RQFKVPDWFLNRK 87 (152)
T ss_dssp TSCHHHHHHHHHHHHSC-----------SSCCCCCCSCSCC
T ss_pred cCCHHHHHHHHHHHHhh-----------cccCcchhhhhhh
Confidence 47899999998776542 1123557999986
No 191
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.99 E-value=52 Score=21.78 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=25.0
Q ss_pred CcccccccccCCCCCceEeeCCeecchhhHHHHHhh
Q psy10849 47 CFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 47 CF~C~~C~~~L~~g~~f~~~~~~lyC~~cy~k~f~~ 82 (267)
=+.|..|...+. ....+.-+..||..|..+.+..
T Consensus 19 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 19 EVTCPICLELLT--QPLSLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHH
Confidence 367888888874 3344556889999999887654
No 192
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.69 E-value=72 Score=21.34 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=24.6
Q ss_pred cccccccccCCCCC--ceEeeCCeecchhhHHHHHhh
Q psy10849 48 FVCVICCQPLQKGE--QFILRSGQLFCRQDFEKEMYL 82 (267)
Q Consensus 48 F~C~~C~~~L~~g~--~f~~~~~~lyC~~cy~k~f~~ 82 (267)
+.|..|...+.... ...+.-|..||..|..+.+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS 52 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc
Confidence 67888888875332 334446889999999887654
Done!