Your job contains 1 sequence.
>psy10849
STSHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG
EQFILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRR
QFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVHGHYLSLG
MSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDESTNLDEGGSDSLS
LDLGPPSNHDTMLSSLGQINPIDKQRC
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10849
(267 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0052105 - symbol:CG32105 species:7227 "Drosophila ... 319 7.3e-40 2
UNIPROTKB|Q8UVR3 - symbol:lmx1b.1 "LIM homeobox transcrip... 211 1.0e-25 2
ZFIN|ZDB-GENE-050114-2 - symbol:lmx1bb "LIM homeobox tran... 203 5.5e-25 2
UNIPROTKB|F1S229 - symbol:LMX1A "Uncharacterized protein"... 279 2.0e-24 1
UNIPROTKB|I3L863 - symbol:LMX1A "Uncharacterized protein"... 279 2.0e-24 1
UNIPROTKB|F1MC25 - symbol:LMX1A "Uncharacterized protein"... 278 2.6e-24 1
UNIPROTKB|F1PDJ1 - symbol:LMX1A "Uncharacterized protein"... 278 2.6e-24 1
UNIPROTKB|Q8TE12 - symbol:LMX1A "LIM homeobox transcripti... 278 2.6e-24 1
MGI|MGI:1888519 - symbol:Lmx1a "LIM homeobox transcriptio... 278 2.6e-24 1
RGD|1304784 - symbol:Lmx1a "LIM homeobox transcription fa... 278 2.6e-24 1
UNIPROTKB|F1N4F7 - symbol:LMX1B "Uncharacterized protein"... 270 1.8e-23 1
UNIPROTKB|F1RS26 - symbol:LMX1B "Uncharacterized protein"... 270 1.8e-23 1
UNIPROTKB|F1NDZ5 - symbol:LMX1B "LIM/homeobox protein LMX... 268 2.9e-23 1
UNIPROTKB|P53413 - symbol:LMX1B "LIM/homeobox protein LMX... 268 2.9e-23 1
UNIPROTKB|J9NU69 - symbol:LMX1B "Uncharacterized protein"... 266 4.8e-23 1
UNIPROTKB|B7ZLH2 - symbol:LMX1B "LMX1B protein" species:9... 266 4.8e-23 1
UNIPROTKB|O60663 - symbol:LMX1B "LIM homeobox transcripti... 266 4.8e-23 1
MGI|MGI:1100513 - symbol:Lmx1b "LIM homeobox transcriptio... 266 4.8e-23 1
UNIPROTKB|F8VYP0 - symbol:LMX1B "LIM homeobox transcripti... 266 4.9e-23 1
UNIPROTKB|G3V877 - symbol:Lmx1b "LIM homeobox transcripti... 265 6.1e-23 1
UNIPROTKB|F8W7W6 - symbol:LMX1B "LIM homeobox transcripti... 266 6.5e-23 1
FB|FBgn0036274 - symbol:CG4328 species:7227 "Drosophila m... 264 4.4e-22 1
UNIPROTKB|H9L043 - symbol:H9L043 "Uncharacterized protein... 253 1.1e-21 1
ZFIN|ZDB-GENE-050114-3 - symbol:lmx1ba "LIM homeobox tran... 249 3.4e-21 1
ZFIN|ZDB-GENE-041014-332 - symbol:lmx1a "LIM homeobox tra... 221 9.7e-21 2
WB|WBGene00002988 - symbol:lim-6 species:6239 "Caenorhabd... 224 1.4e-18 1
WB|WBGene00000438 - symbol:ceh-14 species:6239 "Caenorhab... 176 5.5e-13 1
UNIPROTKB|P20271 - symbol:ceh-14 "Homeobox protein ceh-14... 176 5.5e-13 1
FB|FBgn0002023 - symbol:Lim3 "Lim3" species:7227 "Drosoph... 170 6.5e-13 2
UNIPROTKB|D6RBJ1 - symbol:ISL1 "Insulin gene enhancer pro... 175 1.1e-12 1
UNIPROTKB|A6H796 - symbol:ISL1 "ISL1 protein" species:991... 175 1.4e-12 1
UNIPROTKB|P61371 - symbol:ISL1 "Insulin gene enhancer pro... 175 1.4e-12 1
MGI|MGI:101791 - symbol:Isl1 "ISL1 transcription factor, ... 175 1.4e-12 1
RGD|61957 - symbol:Isl1 "ISL LIM homeobox 1" species:1011... 175 1.4e-12 1
ZFIN|ZDB-GENE-980526-112 - symbol:isl1 "islet1" species:7... 175 1.4e-12 1
UNIPROTKB|F1PP21 - symbol:ISL1 "Uncharacterized protein" ... 175 1.5e-12 1
UNIPROTKB|F1SMF7 - symbol:ISL1 "Uncharacterized protein" ... 175 1.6e-12 1
UNIPROTKB|F1S681 - symbol:LHX4 "Uncharacterized protein" ... 175 1.7e-12 1
UNIPROTKB|F6QGM2 - symbol:LHX3 "LIM/homeobox protein Lhx3... 164 3.1e-12 1
UNIPROTKB|H9L2C7 - symbol:LHX4 "Uncharacterized protein" ... 167 5.8e-12 1
ZFIN|ZDB-GENE-060531-41 - symbol:si:ch211-236k19.2 "si:ch... 169 6.8e-12 1
UNIPROTKB|D6RAK3 - symbol:ISL1 "Insulin gene enhancer pro... 169 8.2e-12 1
UNIPROTKB|P50211 - symbol:ISL1 "Insulin gene enhancer pro... 172 9.1e-12 1
UNIPROTKB|F1NBH3 - symbol:LMO3 "Uncharacterized protein" ... 159 1.0e-11 1
UNIPROTKB|Q2KIA3 - symbol:LMO3 "LIM domain only protein 3... 159 1.0e-11 1
UNIPROTKB|E2RHK8 - symbol:LMO3 "Uncharacterized protein" ... 159 1.0e-11 1
UNIPROTKB|J9NZN8 - symbol:LMO3 "Uncharacterized protein" ... 159 1.0e-11 1
UNIPROTKB|J9P4K0 - symbol:LMO3 "Uncharacterized protein" ... 159 1.0e-11 1
UNIPROTKB|B4DG90 - symbol:LMO3 "LIM domain only protein 3... 159 1.0e-11 1
UNIPROTKB|Q8TAP4 - symbol:LMO3 "LIM domain only protein 3... 159 1.0e-11 1
UNIPROTKB|A9ED84 - symbol:LMO3 "Uncharacterized protein" ... 159 1.0e-11 1
UNIPROTKB|Q9YH16 - symbol:lmo3 "LIM domain only protein 3... 159 1.0e-11 1
MGI|MGI:102810 - symbol:Lmo3 "LIM domain only 3" species:... 159 1.0e-11 1
RGD|1561357 - symbol:RGD1561357 "similar to LIM domain on... 159 1.0e-11 1
ZFIN|ZDB-GENE-050522-201 - symbol:lmo3 "LIM domain only 3... 159 1.0e-11 1
ZFIN|ZDB-GENE-060728-1 - symbol:lhx4 "LIM homeobox 4" spe... 172 1.2e-11 1
UNIPROTKB|H0YKY2 - symbol:ISL2 "Insulin gene enhancer pro... 158 1.3e-11 1
UNIPROTKB|F1NBH5 - symbol:LOC100858792 "Uncharacterized p... 156 2.2e-11 1
UNIPROTKB|Q0P5B3 - symbol:LMO1 "Rhombotin-1" species:9913... 156 2.2e-11 1
UNIPROTKB|E2RLZ2 - symbol:LMO1 "Uncharacterized protein" ... 156 2.2e-11 1
UNIPROTKB|E9PK83 - symbol:LMO1 "Rhombotin-1" species:9606... 156 2.2e-11 1
UNIPROTKB|E9PSF5 - symbol:LMO1 "Rhombotin-1" species:9606... 156 2.2e-11 1
UNIPROTKB|P25800 - symbol:LMO1 "Rhombotin-1" species:9606... 156 2.2e-11 1
UNIPROTKB|Q3B8H4 - symbol:lmo1 "Rhombotin-1" species:8355... 156 2.2e-11 1
ZFIN|ZDB-GENE-021115-6 - symbol:lmo1 "LIM domain only 1" ... 156 2.2e-11 1
RGD|621166 - symbol:Lmo1 "LIM domain only 1" species:1011... 155 2.8e-11 1
UNIPROTKB|Q99MB5 - symbol:Lmo3 "LIM domain only protein 3... 155 2.8e-11 1
UNIPROTKB|A9ED79 - symbol:LMO1 "Uncharacterized protein" ... 154 3.5e-11 1
MGI|MGI:102812 - symbol:Lmo1 "LIM domain only 1" species:... 154 3.5e-11 1
UNIPROTKB|P53410 - symbol:ISL2 "Insulin gene enhancer pro... 168 3.8e-11 1
UNIPROTKB|Q5ISK2 - symbol:Q5ISK2 "LIM homeobox protein 1"... 158 5.7e-11 2
ZFIN|ZDB-GENE-040426-1099 - symbol:zgc:56628 "zgc:56628" ... 152 5.8e-11 1
UNIPROTKB|A7Z015 - symbol:LHX1 "Uncharacterized protein" ... 158 5.8e-11 2
UNIPROTKB|E2RMA8 - symbol:LHX1 "Uncharacterized protein" ... 158 5.8e-11 2
UNIPROTKB|P48742 - symbol:LHX1 "LIM/homeobox protein Lhx1... 158 5.8e-11 2
UNIPROTKB|F2Z531 - symbol:LHX1 "Uncharacterized protein" ... 158 5.8e-11 2
UNIPROTKB|P63008 - symbol:Lhx1 "LIM/homeobox protein Lhx1... 158 5.8e-11 2
UNIPROTKB|Q5IS44 - symbol:LHX1 "LIM/homeobox protein Lhx1... 158 5.8e-11 2
UNIPROTKB|Q5IS89 - symbol:LHX1 "LIM/homeobox protein Lhx1... 158 5.8e-11 2
MGI|MGI:99783 - symbol:Lhx1 "LIM homeobox protein 1" spec... 158 5.8e-11 2
RGD|71074 - symbol:Lhx1 "LIM homeobox 1" species:10116 "R... 158 5.8e-11 2
FB|FBgn0026411 - symbol:Lim1 species:7227 "Drosophila mel... 160 6.9e-11 2
UNIPROTKB|F1NX79 - symbol:LHX1 "LIM/homeobox protein Lhx1... 156 9.5e-11 2
ZFIN|ZDB-GENE-010702-1 - symbol:lmo4a "LIM domain only 4a... 150 1.0e-10 1
UNIPROTKB|P53411 - symbol:LHX1 "LIM/homeobox protein Lhx1... 156 1.2e-10 2
UNIPROTKB|F1MFM7 - symbol:LHX4 "Uncharacterized protein" ... 166 1.3e-10 1
UNIPROTKB|Q969G2 - symbol:LHX4 "LIM/homeobox protein Lhx4... 166 1.3e-10 1
MGI|MGI:101776 - symbol:Lhx4 "LIM homeobox protein 4" spe... 166 1.3e-10 1
UNIPROTKB|F1PCI5 - symbol:LHX4 "Uncharacterized protein" ... 166 1.3e-10 1
UNIPROTKB|B7ZP59 - symbol:lhx1 "Homeobox protein" species... 155 1.6e-10 2
UNIPROTKB|P29674 - symbol:lhx1 "LIM/homeobox protein Lhx1... 155 1.6e-10 2
ZFIN|ZDB-GENE-980526-347 - symbol:lhx1a "LIM homeobox 1a"... 155 1.6e-10 2
UNIPROTKB|P36200 - symbol:lhx3 "LIM/homeobox protein Lhx3... 165 2.0e-10 1
UNIPROTKB|Q9H2C1 - symbol:LHX5 "LIM/homeobox protein Lhx5... 153 2.0e-10 2
ZFIN|ZDB-GENE-980526-562 - symbol:isl2a "islet2a" species... 164 2.1e-10 1
UNIPROTKB|Q5FVB2 - symbol:lmo4.1 "LIM domain transcriptio... 147 2.3e-10 1
ZFIN|ZDB-GENE-980526-116 - symbol:lhx1b "LIM homeobox 1b"... 154 2.3e-10 2
UNIPROTKB|P53412 - symbol:LHX3 "LIM/homeobox protein Lhx3... 164 2.7e-10 1
ZFIN|ZDB-GENE-040624-1 - symbol:isl1l "islet1, like" spec... 162 3.1e-10 1
UNIPROTKB|E1BYB0 - symbol:LMO4 "Uncharacterized protein" ... 146 3.1e-10 1
WARNING: Descriptions of 136 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0052105 [details] [associations]
symbol:CG32105 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
eggNOG:NOG243427 HSSP:P50480 EMBL:BT003467 RefSeq:NP_729801.1
UniGene:Dm.15353 SMR:Q9VTW5 IntAct:Q9VTW5 MINT:MINT-307196
EnsemblMetazoa:FBtr0075953 GeneID:39406 KEGG:dme:Dmel_CG32105
UCSC:CG32105-RB FlyBase:FBgn0052105 InParanoid:Q9VTW5 OMA:CCHAILP
OrthoDB:EOG4BCC40 GenomeRNAi:39406 NextBio:813485 Uniprot:Q9VTW5
Length = 640
Score = 319 (117.4 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 77/164 (46%), Positives = 94/164 (57%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRA-QSHVYHLPCFVCVICCQPLQKGEQF 63
NS + C RL+GVKC+ C +LP E+VMR + V+HLPCFVC C PLQKGEQF
Sbjct: 317 NSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF 376
Query: 64 ILRSGQLFC-RQDFEKEMYLMQQSSPSDDMM-LDEN--CXXXXXXXXXXXXXTILTSAQR 119
+LR GQLFC R D EKEM+L ++ + LDE TILTS QR
Sbjct: 377 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQR 436
Query: 120 RQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
+QFK+SF+ SPKPCRKV T S R + NQR + K
Sbjct: 437 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMK 480
Score = 137 (53.3 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 188 DSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDES 228
DS FAS +PLNPN P+SPDD Y +SNDSFCSSD+SLD S
Sbjct: 537 DSTFAS--QPLNPNLPFSPDD-YPANSNDSFCSSDLSLDGS 574
Score = 93 (37.8 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QR+QFK+SF+ S PCRKV
Sbjct: 425 KRPRTILTSQQRKQFKASFDQSPKPCRKV 453
Score = 78 (32.5 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 7 HVSCHPRGFRLYGVKCARCGDRLLPHE-MVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
H+ C + F L C CG ++ H+ +M +H C C C +Q +
Sbjct: 265 HIKCE-KNFEL----CEGCGQKI--HDRFLMNVGDANWHEQCLACCYC--GMQLHHTCYV 315
Query: 66 RSGQLFCRQDFEK 78
R+ +L+C+ D+++
Sbjct: 316 RNSKLYCKMDYDR 328
>UNIPROTKB|Q8UVR3 [details] [associations]
symbol:lmx1b.1 "LIM homeobox transcription factor 1-beta.1"
species:8355 "Xenopus laevis" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0039020 "pronephric nephron tubule development"
evidence=IMP] [GO:0072013 "glomus development" evidence=IEP;IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0072013
GO:GO:0039020 HOVERGEN:HBG052335 KO:K09371 EMBL:AF414086
RefSeq:NP_001083902.1 UniGene:Xl.12464 HSSP:P50480
ProteinModelPortal:Q8UVR3 GeneID:399182 KEGG:xla:399182 CTD:399182
Xenbase:XB-GENE-494754 Uniprot:Q8UVR3
Length = 400
Score = 211 (79.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 168
Query: 76 FEKEMYLMQQSSPSD 90
+EKE L+ SP D
Sbjct: 169 YEKEKDLLSSGSPDD 183
Score = 105 (42.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
TILT+ QRR FK+SFEVS KPCRKV T S R + NQR + K
Sbjct: 223 TILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKIK 274
Score = 104 (41.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 219 KRPRTILTTQQRRAFKASFEVSSKPCRKV 247
Score = 92 (37.4 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R + +MR +H C C +C QPL F R +LFC+QD+++
Sbjct: 56 CEGC-QRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYF--RDRKLFCKQDYQQ 109
Score = 36 (17.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 205 SPDDSYAMHSND 216
SPDDS ++ S+D
Sbjct: 180 SPDDSDSVKSDD 191
>ZFIN|ZDB-GENE-050114-2 [details] [associations]
symbol:lmx1bb "LIM homeobox transcription factor 1,
beta b" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0042472
"inner ear morphogenesis" evidence=IMP] [GO:0021592 "fourth
ventricle development" evidence=IGI] [GO:0060117 "auditory receptor
cell development" evidence=IMP] [GO:0032474 "otolith morphogenesis"
evidence=IMP] [GO:0048752 "semicircular canal morphogenesis"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] [GO:0061386 "closure of optic fissure"
evidence=IGI] [GO:0060041 "retina development in camera-type eye"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-050114-2 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0060041 GO:GO:0032474
GO:GO:0048752 GO:GO:0030917 GO:GO:0060117 GO:GO:0061386
GO:GO:0021592 HOVERGEN:HBG052335 KO:K09371 EMBL:AY894989
IPI:IPI00631669 RefSeq:NP_001020338.2 UniGene:Dr.108678
ProteinModelPortal:Q4VJ29 STRING:Q4VJ29 GeneID:554360
KEGG:dre:554360 CTD:554360 InParanoid:Q4VJ29 NextBio:20880753
Uniprot:Q4VJ29
Length = 375
Score = 203 (76.5 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFATKCSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSD 145
Query: 76 FEKEMYLMQQSSPSD 90
+E+E L+ SP D
Sbjct: 146 YEREKDLLGSVSPDD 160
Score = 105 (42.0 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
TILT+ QRR FK+SFEVS KPCRKV T S R + NQR + K
Sbjct: 199 TILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 250
Score = 104 (41.7 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 195 KRPRTILTTQQRRAFKASFEVSSKPCRKV 223
Score = 84 (34.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R + +MR +H C C +C QPL F R +L+C+ D+++
Sbjct: 33 CEGC-QRPISDRFLMRVNESSWHEECLQCAVCQQPLTTSCYF--RERKLYCKYDYQQ 86
>UNIPROTKB|F1S229 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CU179728
Ensembl:ENSSSCT00000006937 Uniprot:F1S229
Length = 295
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 62/137 (45%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 1 RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 60
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 61 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQR 120
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 121 RAFKASFEVSSKPCRKV 137
>UNIPROTKB|I3L863 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 OMA:GNAGMEG EMBL:CU179728 Ensembl:ENSSSCT00000032564
Uniprot:I3L863
Length = 296
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 62/137 (45%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 1 RLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 60
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 61 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQR 120
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 121 RAFKASFEVSSKPCRKV 137
>UNIPROTKB|F1MC25 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 CTD:4009 KO:K09371 OMA:GNAGMEG EMBL:DAAA02006817
EMBL:DAAA02006818 EMBL:DAAA02006819 EMBL:DAAA02006820
EMBL:DAAA02006821 EMBL:DAAA02006822 IPI:IPI00701360
RefSeq:NP_001178254.1 UniGene:Bt.106456 Ensembl:ENSBTAT00000015947
GeneID:510296 KEGG:bta:510296 NextBio:20869365 Uniprot:F1MC25
Length = 382
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQR 207
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 208 RAFKASFEVSSKPCRKV 224
Score = 104 (41.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
Score = 81 (33.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R +H C C C +PL+ R +L+C+ D+EK
Sbjct: 35 CEGC-QRVISDRFLLRLNDSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDYEK 88
>UNIPROTKB|F1PDJ1 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:4009 KO:K09371 OMA:GNAGMEG
EMBL:AAEX03018391 EMBL:AAEX03018392 RefSeq:XP_851352.2
Ensembl:ENSCAFT00000021142 GeneID:609061 KEGG:cfa:609061
Uniprot:F1PDJ1
Length = 382
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQR 207
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 208 RAFKASFEVSSKPCRKV 224
Score = 104 (41.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
Score = 81 (33.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R +H C C C +PL+ R +L+C+ D+EK
Sbjct: 35 CEGC-QRVISDRFLLRLNDSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDYEK 88
>UNIPROTKB|Q8TE12 [details] [associations]
symbol:LMX1A "LIM homeobox transcription factor 1-alpha"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001558 "regulation of cell growth" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0021542 "dentate
gyrus development" evidence=IEA] [GO:0021549 "cerebellum
development" evidence=IEA] [GO:0021953 "central nervous system
neuron differentiation" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0071542 "dopaminergic
neuron differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 EMBL:CH471067 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953
EMBL:AY078398 EMBL:AY078391 EMBL:AY078392 EMBL:AY078393
EMBL:AY078394 EMBL:AY078395 EMBL:AY078396 EMBL:AY078397
EMBL:AK127724 EMBL:AL390730 EMBL:AL160058 EMBL:BC119743
EMBL:BC119744 IPI:IPI00152586 IPI:IPI00328299 RefSeq:NP_001167540.1
RefSeq:NP_796372.1 UniGene:Hs.667312 ProteinModelPortal:Q8TE12
SMR:Q8TE12 STRING:Q8TE12 PhosphoSite:Q8TE12 DMDM:27923801
PRIDE:Q8TE12 DNASU:4009 Ensembl:ENST00000294816
Ensembl:ENST00000342310 Ensembl:ENST00000367893 GeneID:4009
KEGG:hsa:4009 UCSC:uc001gcz.2 UCSC:uc021pdy.1 CTD:4009
GeneCards:GC01M165171 HGNC:HGNC:6653 HPA:HPA028051 HPA:HPA030088
MIM:600298 neXtProt:NX_Q8TE12 PharmGKB:PA30416 eggNOG:NOG243427
HOVERGEN:HBG052335 InParanoid:Q8TE12 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN PhylomeDB:Q8TE12 GenomeRNAi:4009 NextBio:15724
ArrayExpress:Q8TE12 Bgee:Q8TE12 CleanEx:HS_LMX1A
Genevestigator:Q8TE12 GermOnline:ENSG00000162761 Uniprot:Q8TE12
Length = 382
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQR 207
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 208 RAFKASFEVSSKPCRKV 224
Score = 104 (41.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
Score = 79 (32.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R +H C C C +PL+ R +L+C+ D+EK
Sbjct: 35 CEGC-QRVILDRFLLRLNDSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYDYEK 88
>MGI|MGI:1888519 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10090 "Mus musculus" [GO:0001558 "regulation of cell
growth" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0007420
"brain development" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0021542 "dentate gyrus development" evidence=IMP]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021766
"hippocampus development" evidence=IMP] [GO:0021953 "central
nervous system neuron differentiation" evidence=IMP] [GO:0030182
"neuron differentiation" evidence=IMP] [GO:0030901 "midbrain
development" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1888519 GO:GO:0005634 GO:GO:0007411
GO:GO:0001558 GO:GO:0046872 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0010468 GeneTree:ENSGT00700000104050
GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953 CTD:4009
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN EMBL:AF226662 IPI:IPI00123446 RefSeq:NP_387501.1
UniGene:Mm.330081 ProteinModelPortal:Q9JKU8 SMR:Q9JKU8
STRING:Q9JKU8 PhosphoSite:Q9JKU8 PRIDE:Q9JKU8
Ensembl:ENSMUST00000028003 Ensembl:ENSMUST00000111377 GeneID:110648
KEGG:mmu:110648 InParanoid:Q9JKU8 NextBio:364391 Bgee:Q9JKU8
CleanEx:MM_LMX1A Genevestigator:Q9JKU8
GermOnline:ENSMUSG00000026686 Uniprot:Q9JKU8
Length = 382
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 208 RAFKASFEVSSKPCRKV 224
Score = 104 (41.7 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
Score = 74 (31.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R +H C C C +PL+ R +L+C+ +EK
Sbjct: 35 CEGC-QRVISDRFLLRLNDSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYHYEK 88
>RGD|1304784 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10116 "Rattus norvegicus" [GO:0001558 "regulation of cell
growth" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA;ISO]
[GO:0007417 "central nervous system development" evidence=ISO]
[GO:0007420 "brain development" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0021542 "dentate gyrus development"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=IEA;ISO] [GO:0021766 "hippocampus development"
evidence=ISO] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA;ISO] [GO:0030182 "neuron
differentiation" evidence=ISO] [GO:0030901 "midbrain development"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:1304784
GO:GO:0005634 GO:GO:0007411 GO:GO:0007420 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021549 GO:GO:0030901
GeneTree:ENSGT00700000104050 GO:GO:0021542 GO:GO:0021953 CTD:4009
KO:K09371 OMA:GNAGMEG IPI:IPI00869778 RefSeq:NP_001099437.2
UniGene:Rn.137284 Ensembl:ENSRNOT00000006163 GeneID:289201
KEGG:rno:289201 NextBio:629386 ArrayExpress:F1LRJ8 Uniprot:F1LRJ8
Length = 382
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ VKC C + + P+E VMRAQ VYHL CF C +C + LQKG++F+L+ GQL C+ D
Sbjct: 88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
Query: 76 FEKEMYLMQQSSP--SDDMMLDEN---CXXXXXXXXXXXXX-----------TILTSAQR 119
+EKE L+ SP SD D+ C TILT+ QR
Sbjct: 148 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQR 207
Query: 120 RQFKSSFEVSPKPCRKV 136
R FK+SFEVS KPCRKV
Sbjct: 208 RAFKASFEVSSKPCRKV 224
Score = 104 (41.7 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
Score = 74 (31.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R +H C C C +PL+ R +L+C+ +EK
Sbjct: 35 CEGC-QRVISDRFLLRLNDSFWHEQCVQCASCKEPLET--TCFYRDKKLYCKYHYEK 88
>UNIPROTKB|F1N4F7 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:DAAA02032139 IPI:IPI00694069 Ensembl:ENSBTAT00000038767
Uniprot:F1N4F7
Length = 294
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 63/156 (40%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 1 RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 60
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 61 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 110
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 111 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 140
>UNIPROTKB|F1RS26 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:CU062602 Ensembl:ENSSSCT00000006164 Uniprot:F1RS26
Length = 294
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 63/156 (40%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 1 RLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 60
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 61 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 110
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 111 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 140
>UNIPROTKB|F1NDZ5 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002930 "trabecular meshwork
development" evidence=IEA] [GO:0008219 "cell death" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021587
"cerebellum morphogenesis" evidence=IEA] [GO:0021954 "central
nervous system neuron development" evidence=IEA] [GO:0030199
"collagen fibril organization" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0035108 "limb morphogenesis"
evidence=IEA] [GO:0035265 "organ growth" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0008219 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0035265
GeneTree:ENSGT00700000104050 IPI:IPI00599399 OMA:NRMEGMM
EMBL:AADN02026296 EMBL:AADN02026297 EMBL:AADN02026298
EMBL:AADN02031658 Ensembl:ENSGALT00000001376 Uniprot:F1NDZ5
Length = 377
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 62/155 (40%), Positives = 84/155 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 145
Query: 76 FEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCRK 135
+EKE L+ SP D + + T Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDDSDSVKSDDEDGDVKP---------TKGQVTQGKGSDD-GKDPRRP 195
Query: 136 VSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 ------KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
>UNIPROTKB|P53413 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
EMBL:L39880 EMBL:U41823 IPI:IPI00599399 RefSeq:NP_990689.1
UniGene:Gga.758 ProteinModelPortal:P53413 STRING:P53413
GeneID:396312 KEGG:gga:396312 CTD:4010 InParanoid:P53413
NextBio:20816360 Uniprot:P53413
Length = 377
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 62/155 (40%), Positives = 84/155 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSD 145
Query: 76 FEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCRK 135
+EKE L+ SP D + + T Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDDSDSVKSDDEDGDVKP---------TKGQVTQGKGSDD-GKDPRRP 195
Query: 136 VSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 ------KRPRTILTTQQRRAFKASFEVSSKPCRKV 224
>UNIPROTKB|J9NU69 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:NRMEGMM EMBL:AAEX03006872
EMBL:AAEX03006873 Ensembl:ENSCAFT00000044276 Uniprot:J9NU69
Length = 327
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 41 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 100
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 101 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 150
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 151 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 180
>UNIPROTKB|B7ZLH2 [details] [associations]
symbol:LMX1B "LMX1B protein" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 HOGENOM:HOG000231629 HOVERGEN:HBG052335 KO:K09371
CTD:4010 EMBL:AL161908 EMBL:AL161731 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 PharmGKB:PA30417
GenomeRNAi:4010 NextBio:15732 EMBL:BC143801 IPI:IPI00956472
RefSeq:NP_001167617.1 SMR:B7ZLH2 STRING:B7ZLH2
Ensembl:ENST00000561065 Uniprot:B7ZLH2
Length = 383
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 195
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 225
>UNIPROTKB|O60663 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001701 "in utero embryonic development" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=ISS] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0001701
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0009953 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
CTD:4010 EMBL:AF057135 EMBL:AF059575 EMBL:AF059572 EMBL:AF059573
EMBL:AF059574 EMBL:AL161908 EMBL:AL161731 EMBL:BC069601
EMBL:BC112120 EMBL:BC113491 IPI:IPI00030989 IPI:IPI00220363
RefSeq:NP_001167618.1 RefSeq:NP_002307.2 UniGene:Hs.129133
ProteinModelPortal:O60663 SMR:O60663 IntAct:O60663 STRING:O60663
PhosphoSite:O60663 PaxDb:O60663 PRIDE:O60663 DNASU:4010
Ensembl:ENST00000373474 Ensembl:ENST00000425646 GeneID:4010
KEGG:hsa:4010 UCSC:uc004bqj.3 GeneCards:GC09P129376 HGNC:HGNC:6654
MIM:161200 MIM:602575 neXtProt:NX_O60663 Orphanet:2614
PharmGKB:PA30417 InParanoid:O60663 PhylomeDB:O60663 GenomeRNAi:4010
NextBio:15732 ArrayExpress:O60663 Bgee:O60663 CleanEx:HS_LMX1B
Genevestigator:O60663 GermOnline:ENSG00000136944 Uniprot:O60663
Length = 379
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 195
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 225
>MGI|MGI:1100513 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10090 "Mus musculus" [GO:0001764 "neuron migration"
evidence=IMP] [GO:0002930 "trabecular meshwork development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008219 "cell death" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0021587 "cerebellum morphogenesis"
evidence=IMP] [GO:0021954 "central nervous system neuron
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0030199 "collagen fibril organization"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=NAS] [GO:0030901 "midbrain development" evidence=IMP]
[GO:0035108 "limb morphogenesis" evidence=IMP] [GO:0035265 "organ
growth" evidence=IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AF078166
MGI:MGI:1100513 GO:GO:0005634 GO:GO:0001764 GO:GO:0046872
GO:GO:0008283 GO:GO:0008219 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0030326 GO:GO:0030901 GO:GO:0035265 EMBL:CH466542
GO:GO:0009953 GO:GO:0021954 GeneTree:ENSGT00700000104050
GO:GO:0021587 HOGENOM:HOG000231629 eggNOG:NOG243427
HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN CTD:4010
EMBL:AL929212 EMBL:BC119169 EMBL:BC125469 IPI:IPI00132794
RefSeq:NP_034855.2 UniGene:Mm.39825 ProteinModelPortal:O88609
SMR:O88609 STRING:O88609 PhosphoSite:O88609 PRIDE:O88609
Ensembl:ENSMUST00000041730 GeneID:16917 KEGG:mmu:16917
InParanoid:Q0VEN6 OMA:NRMEGMM NextBio:290964 Bgee:O88609
CleanEx:MM_LMX1B Genevestigator:O88609
GermOnline:ENSMUSG00000038765 GO:GO:0002930 Uniprot:O88609
Length = 372
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 195
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 225
>UNIPROTKB|F8VYP0 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
IPI:IPI00220363 RefSeq:NP_002307.2 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 GenomeRNAi:4010
NextBio:15732 ProteinModelPortal:F8VYP0 SMR:F8VYP0 PRIDE:F8VYP0
Ensembl:ENST00000526117 UCSC:uc004bqi.3 ArrayExpress:F8VYP0
Bgee:F8VYP0 Uniprot:F8VYP0
Length = 395
Score = 266 (98.7 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 218
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 219 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 248
>UNIPROTKB|G3V877 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10116 "Rattus norvegicus" [GO:0001764 "neuron migration"
evidence=IEA] [GO:0002930 "trabecular meshwork development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021587 "cerebellum morphogenesis" evidence=IEA]
[GO:0021954 "central nervous system neuron development"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0035265 "organ
growth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:620843 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CH474001 OMA:NRMEGMM
UniGene:Rn.92364 Ensembl:ENSRNOT00000022953 Uniprot:G3V877
Length = 372
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 86 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 145
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 146 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQNKGSGDDGKDPRR 195
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 196 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 225
>UNIPROTKB|F8W7W6 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
UniGene:Hs.129133 DNASU:4010 GeneID:4010 KEGG:hsa:4010
HGNC:HGNC:6654 GenomeRNAi:4010 NextBio:15732 OMA:NRMEGMM
IPI:IPI00956472 RefSeq:NP_001167617.1 ProteinModelPortal:F8W7W6
SMR:F8W7W6 Ensembl:ENST00000355497 UCSC:uc011maa.2
ArrayExpress:F8W7W6 Bgee:F8W7W6 Uniprot:F8W7W6
Length = 406
Score = 266 (98.7 bits), Expect = 6.5e-23, P = 6.5e-23
Identities = 62/156 (39%), Positives = 85/156 (54%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E VMRA VYHL CF C +C + L+KG++F+L+ GQL C+ D
Sbjct: 109 QLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGD 168
Query: 76 FEKEMYLMQQSSPSD-DMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPCR 134
+EKE L+ SP + D + E+ Q Q K S + P R
Sbjct: 169 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPA----------KGQGSQSKGSGDDGKDPRR 218
Query: 135 KVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 219 P------KRPRTILTTQQRRAFKASFEVSSKPCRKV 248
>FB|FBgn0036274 [details] [associations]
symbol:CG4328 species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0006911
"phagocytosis, engulfment" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0006911 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0048813
GeneTree:ENSGT00700000104050 EMBL:BT050501 RefSeq:NP_648567.2
UniGene:Dm.27132 SMR:Q9VTW3 IntAct:Q9VTW3 MINT:MINT-301655
EnsemblMetazoa:FBtr0301071 GeneID:39405 KEGG:dme:Dmel_CG4328
UCSC:CG4328-RA FlyBase:FBgn0036274 InParanoid:Q9VTW3 OMA:ETNKENC
OrthoDB:EOG4B8GVN GenomeRNAi:39405 NextBio:813480 Uniprot:Q9VTW3
Length = 544
Score = 264 (98.0 bits), Expect = 4.4e-22, P = 4.4e-22
Identities = 62/150 (41%), Positives = 84/150 (56%)
Query: 16 RLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
RLY ++ C CG ++ E+VMR +V+HL CF CV+C L+KGEQ++++ GQLFCR
Sbjct: 252 RLY-IRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCR 310
Query: 74 QDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFEVSPKPC 133
D+EKE+ ++Q D + TIL + QRR FK+SFEVSPKPC
Sbjct: 311 FDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPR---TILNTQQRRAFKASFEVSPKPC 367
Query: 134 RKV------STMNSKRAKNILTPNQRRQFK 157
RKV T S R + NQR + K
Sbjct: 368 RKVRENLAKDTGLSLRIVQVWFQNQRAKVK 397
Score = 95 (38.5 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 29/85 (34%), Positives = 37/85 (43%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKVGVH-GHYLSLGMSLQDSSDSIFASSTKPLNP 200
KR + IL QRR FK+SFE+S PCRKV + L + + + K +
Sbjct: 342 KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQK 401
Query: 201 NHPYSPDDSYAMHSNDSFCSSDISL 225
P A S DS S D SL
Sbjct: 402 KAKQEPPSKGASDSQDSQESLDSSL 426
Score = 80 (33.2 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEM 80
+CA C + +MR + +H C C C L R G+L+CR D+E+ +
Sbjct: 198 QCAHCCQPICDR-YIMRVVENSFHEGCLKCTACS--LHLVHSCYAREGKLYCRVDYER-L 253
Query: 81 YL 82
Y+
Sbjct: 254 YI 255
>UNIPROTKB|H9L043 [details] [associations]
symbol:H9L043 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02053375
Ensembl:ENSGALT00000021923 OMA:CECERRL Uniprot:H9L043
Length = 280
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 54/132 (40%), Positives = 75/132 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+ KC+ C + P E++MR +VYH+ CF C C + LQ+G++F+L+ GQL CR D
Sbjct: 1 RLFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSD 60
Query: 76 FEKEMYLMQQSSPSDDMML---DENCXXXXXXXXXXXXX--------TILTSAQRRQFKS 124
+EKE ++ SP+ + DE+ TILT+ QRR FK+
Sbjct: 61 YEKEKEMLSAISPAPTESVKSEDEDGGHSHGKGSEDSKDHKRSKRPRTILTTQQRRAFKA 120
Query: 125 SFEVSPKPCRKV 136
SFEVS KPCRKV
Sbjct: 121 SFEVSSKPCRKV 132
Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 141 SKRAKNILTPNQRRQFKSSFEISSMPCRKV 170
SKR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 103 SKRPRTILTTQQRRAFKASFEVSSKPCRKV 132
>ZFIN|ZDB-GENE-050114-3 [details] [associations]
symbol:lmx1ba "LIM homeobox transcription factor 1,
beta a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0030902
"hindbrain development" evidence=IMP] [GO:0021592 "fourth ventricle
development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0061386 "closure of optic fissure" evidence=IGI]
[GO:0060041 "retina development in camera-type eye" evidence=IGI]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-050114-3
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060041 GeneTree:ENSGT00700000104050 GO:GO:0030917
GO:GO:0061386 HOGENOM:HOG000231629 GO:GO:0021592 HOVERGEN:HBG052335
EMBL:BX511196 EMBL:CABZ01060115 EMBL:CABZ01060116 EMBL:CABZ01060117
EMBL:CABZ01060118 EMBL:CABZ01060119 EMBL:CABZ01084097
EMBL:CABZ01084098 EMBL:CABZ01084099 EMBL:CABZ01084100 EMBL:AY551078
IPI:IPI00616332 UniGene:Dr.94065 Ensembl:ENSDART00000126544
Uniprot:Q4L1M5
Length = 375
Score = 249 (92.7 bits), Expect = 3.4e-21, P = 3.4e-21
Identities = 57/136 (41%), Positives = 77/136 (56%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
+L+ KC+ C +++ P E+VMRA VYHL CF C +C + L KG++F+L+ GQL C+ D
Sbjct: 86 QLFATKCSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTD 145
Query: 76 FEKEMYL----MQQSSPSDDMMLD---ENCXXXXXXXXXXXXX--------TILTSAQRR 120
+E+E L + S S+D LD E TILT+ QRR
Sbjct: 146 YEREKDLASPDLSDSDKSEDEDLDVKPEKGAGGQGKGSDDSKDPRRPKRPRTILTTQQRR 205
Query: 121 QFKSSFEVSPKPCRKV 136
FK+SFEVS KPCRKV
Sbjct: 206 AFKASFEVSSKPCRKV 221
Score = 104 (41.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 193 KRPRTILTTQQRRAFKASFEVSSKPCRKV 221
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R + ++R +H C C +C Q L R +L+C+ D+++
Sbjct: 33 CEGC-HRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMS--CYSRDHKLYCKHDYQQ 86
>ZFIN|ZDB-GENE-041014-332 [details] [associations]
symbol:lmx1a "LIM homeobox transcription factor 1,
alpha" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-041014-332 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
HOGENOM:HOG000231629 CTD:4009 HOVERGEN:HBG052335 EMBL:BX296562
IPI:IPI00496510 RefSeq:NP_001020669.1 UniGene:Dr.108111
Ensembl:ENSDART00000019059 GeneID:558036 KEGG:dre:558036
eggNOG:NOG302270 InParanoid:Q5RI65 OMA:RLYSMQD OrthoDB:EOG4P8FJW
NextBio:20882278 Uniprot:Q5RI65
Length = 366
Score = 221 (82.9 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 63/174 (36%), Positives = 82/174 (47%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQ-SHVYHLPCFVCVICCQPLQKGEQF 63
N + C +L+ V+C C + + P E+VMRAQ S V+HL CF C +C LQKG+
Sbjct: 68 NKTLYCKRDYQKLFVVRCQGCSEIISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHC 127
Query: 64 ILRSGQLFCRQDFEKEMY--LMQQSSPSDDMMLDE------------NCXXXXXXXXXXX 109
+LR LFC F ++ S S+D+ D N
Sbjct: 128 VLRGDGLFCATHFHNQLASPTSSDSGKSEDIEEDNDDEDNLKTAGESNITGDVEHKRPKR 187
Query: 110 XXTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
TILT+ QRR FK+SFEVS KPCRKV T S R + NQR + K
Sbjct: 188 PRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 241
Score = 104 (41.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 186 KRPRTILTTQQRRAFKASFEVSSKPCRKV 214
Score = 90 (36.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C + L+ ++R Q ++H C C C +PL+ + LR+ L+C++D++K
Sbjct: 26 CEGCNE-LIRDRYLLRVQDGLWHERCLHCASCREPLK--DTCFLRNKTLYCKRDYQK 79
Score = 43 (20.2 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKVGVH----GHYL--SLGMSLQDSS---DSIFA 192
++ K + P ++R+ S + ++ C + V G Y +SL S D
Sbjct: 248 QQQKQTVCPQEKRESPSQ-QHTATSCGALPVELECAGSYPLPQQNLSLDSQSLKLDPFRQ 306
Query: 193 SSTKPLNPN---HPYSPDDSYAMHSNDSFC 219
T P P HPY D Y +D C
Sbjct: 307 GLTPPQMPGDHMHPYGCDTLYDETDSDPLC 336
>WB|WBGene00002988 [details] [associations]
symbol:lim-6 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030421 "defecation"
evidence=IMP] [GO:0060756 "foraging behavior" evidence=IMP]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0009449 "gamma-aminobutyric acid
biosynthetic process" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0061038 "uterus morphogenesis"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007409 GO:GO:0010468 GO:GO:0030421
GeneTree:ENSGT00700000104050 GO:GO:0009449 eggNOG:NOG243427
GO:GO:0061038 EMBL:FO080324 GeneID:180459 KEGG:cel:CELE_K03E6.1
CTD:180459 GO:GO:0060756 RefSeq:NP_001256980.1
ProteinModelPortal:Q21192 SMR:Q21192 PaxDb:Q21192
EnsemblMetazoa:K03E6.1b UCSC:K03E6.1 WormBase:K03E6.1b
HOGENOM:HOG000018451 InParanoid:Q21192 OMA:HGNIYCE NextBio:909480
ArrayExpress:Q21192 Uniprot:Q21192
Length = 316
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 54/161 (33%), Positives = 78/161 (48%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + ++ C LYG +C RC LLP ++V R YH CF C C +P G++
Sbjct: 84 SRHGNIYCEHDHQMLYGKRCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDE 143
Query: 63 FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQF 122
+ + G++FCR D++ S+P D +++E TIL + QRRQF
Sbjct: 144 YHVFDGEVFCRNDYQSICNFQTISNP--DPLMEEVVRSEIHRKTPKRPRTILNAQQRRQF 201
Query: 123 KSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
K++FE S KP RKV T S R + NQR + K
Sbjct: 202 KTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQRAKIK 242
Score = 86 (35.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + IL QRRQFK++FE SS P RKV
Sbjct: 187 KRPRTILNAQQRRQFKTAFERSSKPSRKV 215
Score = 76 (31.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQ-PLQKGEQFILRSGQLFCRQDFE 77
C+ CG L+ + R YH C C CCQ L ++ R G ++C D +
Sbjct: 42 CSGCGC-LIKDRYIYRVMEDSYHESCLRCS-CCQLSLSSFKKCFSRHGNIYCEHDHQ 96
>WB|WBGene00000438 [details] [associations]
symbol:ceh-14 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0040040 "thermosensory behavior" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 176 (67.0 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 63/251 (25%), Positives = 110/251 (43%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
C ++ +G KC+ C + ++P +V +A +HVYH+ CF C IC + L+ GE+F L +
Sbjct: 95 CRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADD 154
Query: 68 GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFE 127
+L C+ D+E+ D++C T +++ K +++
Sbjct: 155 ARLVCKDDYEQAR--------------DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQ 200
Query: 128 VSPKPCRKVSTM----------------NSKRAKNI-LTPNQRRQFKSSFEI---SSMPC 167
S KP R V ++RAK L + R++KSS S+ P
Sbjct: 201 TSSKPARHVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSNRAESDSNSPI 260
Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY---SPD-DSYAMH-SNDSFCSS 221
+ G +YL L + D ++S + ++ P+ Y +P D MH + S ++
Sbjct: 261 ESINGQSPNYLYLDHPMDDGNESNYLFHSREQTPDKYYRNETPSTDPPPMHMTTPSVLTT 320
Query: 222 DIS--LDESTN 230
+ S L STN
Sbjct: 321 NFSTPLSLSTN 331
>UNIPROTKB|P20271 [details] [associations]
symbol:ceh-14 "Homeobox protein ceh-14" species:6239
"Caenorhabditis elegans" [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0016048 "detection of
temperature stimulus" evidence=IMP] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 176 (67.0 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 63/251 (25%), Positives = 110/251 (43%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-- 67
C ++ +G KC+ C + ++P +V +A +HVYH+ CF C IC + L+ GE+F L +
Sbjct: 95 CRAHFYKKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADD 154
Query: 68 GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSFE 127
+L C+ D+E+ D++C T +++ K +++
Sbjct: 155 ARLVCKDDYEQAR--------------DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQ 200
Query: 128 VSPKPCRKVSTM----------------NSKRAKNI-LTPNQRRQFKSSFEI---SSMPC 167
S KP R V ++RAK L + R++KSS S+ P
Sbjct: 201 TSSKPARHVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSNRAESDSNSPI 260
Query: 168 RKV-GVHGHYLSLGMSLQDSSDSIFASSTKPLNPNHPY---SPD-DSYAMH-SNDSFCSS 221
+ G +YL L + D ++S + ++ P+ Y +P D MH + S ++
Sbjct: 261 ESINGQSPNYLYLDHPMDDGNESNYLFHSREQTPDKYYRNETPSTDPPPMHMTTPSVLTT 320
Query: 222 DIS--LDESTN 230
+ S L STN
Sbjct: 321 NFSTPLSLSTN 331
>FB|FBgn0002023 [details] [associations]
symbol:Lim3 "Lim3" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007399 "nervous system
development" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HSSP:P50480 FlyBase:FBgn0002023
EMBL:BT003469 ProteinModelPortal:Q86P58 SMR:Q86P58 IntAct:Q86P58
STRING:Q86P58 PRIDE:Q86P58 InParanoid:Q86P58 ArrayExpress:Q86P58
Bgee:Q86P58 Uniprot:Q86P58
Length = 523
Score = 170 (64.9 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 41/138 (29%), Positives = 69/138 (50%)
Query: 3 SHNSHVSCHPRGF---RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQK 59
+ N + C F R YG KC+ C + P ++V RAQ +VYHL CF+C +C + L
Sbjct: 162 ARNGQLFCKEDFFKSNRRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNT 221
Query: 60 GEQF-ILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXXTILTSAQ 118
G++F ++ +L C++D+E+ + + + LD + T +T+ Q
Sbjct: 222 GDEFYLMEDRKLICKRDYEE--------AKAKGLYLDGSLDGDQPNKRPR---TTITAKQ 270
Query: 119 RRQFKSSFEVSPKPCRKV 136
K+++ SPKP R V
Sbjct: 271 LETLKTAYNNSPKPARHV 288
Score = 49 (22.3 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 208 DSYAMH--SNDSFCSSDISLDESTN 230
DS++ H SNDS+ + ++ LDE +
Sbjct: 355 DSFSHHDLSNDSYSTVNLGLDEGAS 379
>UNIPROTKB|D6RBJ1 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HOGENOM:HOG000236304 HGNC:HGNC:6132
EMBL:AC010478 IPI:IPI00966899 ProteinModelPortal:D6RBJ1 SMR:D6RBJ1
Ensembl:ENST00000511384 ArrayExpress:D6RBJ1 Bgee:D6RBJ1
Uniprot:D6RBJ1
Length = 326
Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>UNIPROTKB|A6H796 [details] [associations]
symbol:ISL1 "ISL1 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148
GO:GO:0003215 GO:GO:0060384 GO:GO:0021520 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:DAAA02050419 EMBL:BC146163
IPI:IPI00854388 RefSeq:NP_001092600.1 UniGene:Bt.28168 SMR:A6H796
STRING:A6H796 Ensembl:ENSBTAT00000001638 GeneID:614040
KEGG:bta:614040 InParanoid:A6H796 NextBio:20898906 Uniprot:A6H796
Length = 349
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>UNIPROTKB|P61371 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0003266 "regulation of secondary heart
field cardioblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0021520 "spinal cord motor
neuron cell fate specification" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0031103 "axon regeneration"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=ISS] [GO:0010575 "positive
regulation vascular endothelial growth factor production"
evidence=ISS] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=ISS] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=ISS] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=ISS] [GO:0045766
"positive regulation of angiogenesis" evidence=ISS] [GO:0071657
"positive regulation of granulocyte colony-stimulating factor
production" evidence=ISS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0021522
"spinal cord motor neuron differentiation" evidence=ISS]
[GO:0048762 "mesenchymal cell differentiation" evidence=ISS]
[GO:0031016 "pancreas development" evidence=ISS] [GO:1901258
"positive regulation of macrophage colony-stimulating factor
production" evidence=ISS] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=ISS] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=ISS] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=ISS] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=ISS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0048936 "peripheral nervous system
neuron axonogenesis" evidence=ISS] [GO:0048665 "neuron fate
specification" evidence=ISS] [GO:0021559 "trigeminal nerve
development" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0048880 "sensory system
development" evidence=ISS] [GO:0060384 "innervation" evidence=ISS]
[GO:0060413 "atrial septum morphogenesis" evidence=ISS] [GO:0060037
"pharyngeal system development" evidence=ISS] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=ISS]
[GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS]
[GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0003148
"outflow tract septum morphogenesis" evidence=ISS] [GO:0003139
"secondary heart field specification" evidence=IMP] [GO:0043425
"bHLH transcription factor binding" evidence=IPI] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0060913 "cardiac cell fate
determination" evidence=IDA] [GO:0071385 "cellular response to
glucocorticoid stimulus" evidence=ISS] [GO:0032024 "positive
regulation of insulin secretion" evidence=IC] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=ISS]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISS] [GO:0030331 "estrogen receptor
binding" evidence=ISS] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0050728 GO:GO:0008270 GO:GO:0071385 GO:GO:0045665
GO:GO:0043524 GO:GO:0032755 GO:GO:0010575 GO:GO:0032024
GO:GO:0003700 GO:GO:0045766 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0060037 GO:GO:0090090 GO:GO:0032731 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0030331 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0048665 GO:GO:0032729
GO:GO:0032760 GO:GO:0016922 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0048762 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0032730 GO:GO:0032735 GO:GO:0071657
GO:GO:0060413 GO:GO:0033147 GO:GO:0003266 eggNOG:COG5576
GO:GO:0003148 GO:GO:0003215 GO:GO:0060384 GO:GO:0021520
GO:GO:0032725 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
EMBL:S70721 EMBL:U07559 EMBL:BC031213 IPI:IPI00025071 PIR:I53277
RefSeq:NP_002193.2 UniGene:Hs.505 ProteinModelPortal:P61371
SMR:P61371 IntAct:P61371 STRING:P61371 PhosphoSite:P61371
DMDM:47606423 PRIDE:P61371 DNASU:3670 Ensembl:ENST00000230658
GeneID:3670 KEGG:hsa:3670 UCSC:uc003jor.3 GeneCards:GC05P050714
HGNC:HGNC:6132 MIM:600366 neXtProt:NX_P61371 PharmGKB:PA29932
InParanoid:P61371 PhylomeDB:P61371 GenomeRNAi:3670 NextBio:14363
ArrayExpress:P61371 Bgee:P61371 CleanEx:HS_ISL1
Genevestigator:P61371 GermOnline:ENSG00000016082 GO:GO:0060913
GO:GO:0060379 GO:GO:0090074 GO:GO:0048880 GO:GO:0021524
Uniprot:P61371
Length = 349
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>MGI|MGI:101791 [details] [associations]
symbol:Isl1 "ISL1 transcription factor, LIM/homeodomain"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO;IDA] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISO] [GO:0001755 "neural
crest cell migration" evidence=IGI] [GO:0003007 "heart
morphogenesis" evidence=IGI] [GO:0003139 "secondary heart field
specification" evidence=ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IGI] [GO:0003151 "outflow tract
morphogenesis" evidence=IGI] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IGI] [GO:0003215 "cardiac right ventricle
morphogenesis" evidence=IGI] [GO:0003266 "regulation of secondary
heart field cardioblast proliferation" evidence=IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0010575 "positive regulation vascular
endothelial growth factor production" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021524 "visceral motor neuron
differentiation" evidence=IGI] [GO:0021559 "trigeminal nerve
development" evidence=IMP] [GO:0021983 "pituitary gland
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IGI;IMP] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0031016 "pancreas development" evidence=IMP]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP]
[GO:0032024 "positive regulation of insulin secretion"
evidence=ISO] [GO:0032725 "positive regulation of granulocyte
macrophage colony-stimulating factor production" evidence=IDA]
[GO:0032729 "positive regulation of interferon-gamma production"
evidence=IDA] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=IDA] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=IDA] [GO:0032735 "positive
regulation of interleukin-12 production" evidence=IDA] [GO:0032755
"positive regulation of interleukin-6 production" evidence=IDA]
[GO:0032760 "positive regulation of tumor necrosis factor
production" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0042517 "positive regulation of tyrosine phosphorylation of
Stat3 protein" evidence=IDA] [GO:0043388 "positive regulation of
DNA binding" evidence=IDA] [GO:0043425 "bHLH transcription factor
binding" evidence=ISO] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI] [GO:0045766 "positive regulation of
angiogenesis" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IDA;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IGI]
[GO:0048665 "neuron fate specification" evidence=IMP] [GO:0048762
"mesenchymal cell differentiation" evidence=IMP] [GO:0048880
"sensory system development" evidence=IMP] [GO:0048936 "peripheral
nervous system neuron axonogenesis" evidence=IMP] [GO:0050728
"negative regulation of inflammatory response" evidence=IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IGI] [GO:0060037 "pharyngeal system development"
evidence=IGI] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IMP] [GO:0060384 "innervation"
evidence=IMP] [GO:0060413 "atrial septum morphogenesis"
evidence=IGI] [GO:0060913 "cardiac cell fate determination"
evidence=ISO;IMP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IDA] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=ISO] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IGI] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101791 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0001755 GO:GO:0050728
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0032755
GO:GO:0010575 GO:GO:0032024 GO:GO:0003700 GO:GO:0045766
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0032731
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0032729 GO:GO:0032760
GeneTree:ENSGT00700000104050 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0032730 GO:GO:0032735 GO:GO:0071657 GO:GO:0060413
GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 GO:GO:0032725 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:AJ132765 EMBL:AB104633
IPI:IPI00121604 IPI:IPI00415262 RefSeq:NP_067434.3 UniGene:Mm.42242
PDB:2RGT PDBsum:2RGT ProteinModelPortal:P61372 SMR:P61372
MINT:MINT-4594016 STRING:P61372 PhosphoSite:P61372 PRIDE:P61372
Ensembl:ENSMUST00000036060 Ensembl:ENSMUST00000176044 GeneID:16392
KEGG:mmu:16392 UCSC:uc007ryf.2 InParanoid:P61372
EvolutionaryTrace:P61372 NextBio:289537 Bgee:P61372 CleanEx:MM_ISL1
Genevestigator:P61372 GermOnline:ENSMUSG00000042258 Uniprot:P61372
Length = 349
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>RGD|61957 [details] [associations]
symbol:Isl1 "ISL LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA;ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA;ISO] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=IEA;ISO] [GO:0001755 "neural
crest cell migration" evidence=IEA;ISO] [GO:0003007 "heart
morphogenesis" evidence=ISO] [GO:0003139 "secondary heart field
specification" evidence=IEA;ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IEA;ISO] [GO:0003151 "outflow tract
morphogenesis" evidence=ISO] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IEA;ISO] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA;ISO] [GO:0003266 "regulation
of secondary heart field cardioblast proliferation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007507 "heart development"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010575 "positive regulation vascular endothelial
growth factor production" evidence=IEA;ISO] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IDA;IPI]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0021559 "trigeminal nerve
development" evidence=IEA;ISO] [GO:0021983 "pituitary gland
development" evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0031016 "pancreas development" evidence=IEA;ISO] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031290 "retinal ganglion cell
axon guidance" evidence=IEA;ISO] [GO:0032024 "positive regulation of
insulin secretion" evidence=IMP] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA;ISO] [GO:0032729 "positive regulation of
interferon-gamma production" evidence=IEA;ISO] [GO:0032730 "positive
regulation of interleukin-1 alpha production" evidence=IEA;ISO]
[GO:0032731 "positive regulation of interleukin-1 beta production"
evidence=IEA;ISO] [GO:0032735 "positive regulation of interleukin-12
production" evidence=IEA;ISO] [GO:0032755 "positive regulation of
interleukin-6 production" evidence=IEA;ISO] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=IEA;ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IDA] [GO:0042517 "positive regulation of
tyrosine phosphorylation of Stat3 protein" evidence=IEA;ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA;ISO]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA;ISO]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045766 "positive regulation
of angiogenesis" evidence=IEA;ISO] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0048663 "neuron fate commitment" evidence=ISO] [GO:0048665
"neuron fate specification" evidence=ISO] [GO:0048762 "mesenchymal
cell differentiation" evidence=ISO] [GO:0048880 "sensory system
development" evidence=IEA;ISO] [GO:0048936 "peripheral nervous
system neuron axonogenesis" evidence=IEA;ISO] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA;ISO] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA;ISO]
[GO:0060037 "pharyngeal system development" evidence=IEA;ISO]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA;ISO] [GO:0060384 "innervation" evidence=IEA;ISO]
[GO:0060413 "atrial septum morphogenesis" evidence=IEA;ISO]
[GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
[GO:0071385 "cellular response to glucocorticoid stimulus"
evidence=IEP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA;ISO] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:61957 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0001755 GO:GO:0043565 GO:GO:0008270 GO:GO:0071385
GO:GO:0045944 GO:GO:0045665 GO:GO:0043524 GO:GO:0032024
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0030331
GO:GO:0021559 GO:GO:0001158 GO:GO:0042517
GeneTree:ENSGT00700000104050 GO:GO:0016922 GO:GO:0031103
GO:GO:0055010 GO:GO:0003203 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0060413 GO:GO:0033147 GO:GO:0003266
eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215 GO:GO:0060384
GO:GO:0021520 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
GO:GO:0060913 GO:GO:0060379 GO:GO:0090074 GO:GO:0048880
GO:GO:0021524 EMBL:S69329 EMBL:AY557632 EMBL:X53258 IPI:IPI00201439
IPI:IPI00417237 PIR:I67417 RefSeq:NP_059035.3 UniGene:Rn.36202
ProteinModelPortal:P61374 SMR:P61374 STRING:P61374
PhosphoSite:P61374 PRIDE:P61374 Ensembl:ENSRNOT00000017305
GeneID:64444 KEGG:rno:64444 InParanoid:P61374 NextBio:613174
Genevestigator:P61374 GermOnline:ENSRNOG00000012556 Uniprot:P61374
Length = 349
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>ZFIN|ZDB-GENE-980526-112 [details] [associations]
symbol:isl1 "islet1" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IMP]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048665 "neuron fate specification" evidence=IGI;IMP]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0055011 "atrial cardiac muscle cell differentiation"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-112 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0048665
GeneTree:ENSGT00700000104050 GO:GO:0031017 eggNOG:COG5576 CTD:3670
HOVERGEN:HBG004671 KO:K09370 EMBL:D21135 EMBL:AL954694
EMBL:BC060892 IPI:IPI00487340 PIR:I51739 RefSeq:NP_571037.1
UniGene:Dr.75106 ProteinModelPortal:P53405 SMR:P53405 STRING:P53405
Ensembl:ENSDART00000010896 GeneID:30147 KEGG:dre:30147
HOGENOM:HOG000236304 InParanoid:A2AWM5 OMA:TDMGDMG
OrthoDB:EOG4G4GQR NextBio:20806622 Bgee:P53405 GO:GO:0055011
GO:GO:0048936 Uniprot:P53405
Length = 349
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>UNIPROTKB|F1PP21 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:TDMGDMG EMBL:AAEX03003122
Ensembl:ENSCAFT00000029303 Uniprot:F1PP21
Length = 360
Score = 175 (66.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 77 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 136
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 137 LFCRADHD 144
>UNIPROTKB|F1SMF7 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 OMA:TDMGDMG GO:GO:0048936 GO:GO:0060913
GO:GO:0060379 GO:GO:0048880 GO:GO:0021524 EMBL:CU915536
Ensembl:ENSSSCT00000018387 Uniprot:F1SMF7
Length = 361
Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR
Sbjct: 79 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG 138
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 139 LFCRADHD 146
>UNIPROTKB|F1S681 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 GO:GO:0021526
OMA:LSFRDDQ EMBL:CU855640 EMBL:FP476046 Ensembl:ENSSSCT00000016925
Uniprot:F1S681
Length = 369
Score = 175 (66.7 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KC C + P ++V +AQ VYHLPCF C+IC + L G++
Sbjct: 49 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDE 108
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 109 FYLMEDGRLVCKEDYE 124
>UNIPROTKB|F6QGM2 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0000988 EMBL:AADN02026398 IPI:IPI00820696
ProteinModelPortal:F6QGM2 Ensembl:ENSGALT00000006259
ArrayExpress:F6QGM2 Uniprot:F6QGM2
Length = 214
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF C++C + L G++
Sbjct: 68 SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 128 FYLMEDSRLVCKADYE 143
>UNIPROTKB|H9L2C7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0021526 "medial motor column neuron
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02073379 EMBL:AADN02073380
Ensembl:ENSGALT00000035845 OMA:ERSWHSK Uniprot:H9L2C7
Length = 237
Score = 167 (63.8 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF-ILR 66
V C F+ +G KC C + P ++V +AQ VYHL CF C+IC + L G++F ++
Sbjct: 50 VYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLME 109
Query: 67 SGQLFCRQDFE 77
G+L C++D+E
Sbjct: 110 DGRLVCKEDYE 120
>ZFIN|ZDB-GENE-060531-41 [details] [associations]
symbol:si:ch211-236k19.2 "si:ch211-236k19.2"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-060531-41
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:BX255921 IPI:IPI01006880
Ensembl:ENSDART00000073963 OMA:ANDWIRR Uniprot:F6P152
Length = 255
Score = 169 (64.5 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C +G+KCARCG ++ ++ + RA + +YHL CF C C + L GE+F
Sbjct: 46 NKEIFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFG 105
Query: 65 LRSGQLFCRQDFEKEMYLMQQSSPSDDMM-LD 95
L Q+ CR ++ + +QQ S + +++ LD
Sbjct: 106 LMENQVLCRVHYDITLLNLQQLSDNGNLIHLD 137
>UNIPROTKB|D6RAK3 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HGNC:HGNC:6132 EMBL:AC010478 IPI:IPI00966565
Ensembl:ENST00000505475 Bgee:D6RAK3 Uniprot:D6RAK3
Length = 260
Score = 169 (64.5 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
LYG+KCA+C ++ VMRA+S VYH+ CF CV C + L G++F LR LFCR D
Sbjct: 10 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 69
Query: 77 E 77
+
Sbjct: 70 D 70
>UNIPROTKB|P50211 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:L35567
IPI:IPI00598855 PIR:I50369 RefSeq:NP_990745.1 UniGene:Gga.1507
ProteinModelPortal:P50211 SMR:P50211 GeneID:396383 KEGG:gga:396383
CTD:3670 HOVERGEN:HBG004671 KO:K09370 NextBio:20816425
Uniprot:P50211
Length = 349
Score = 172 (65.6 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RLYG+KCA+C ++ VMRA++ VYH+ CF CV C + L G++F LR
Sbjct: 67 CKRDYIRLYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDG 126
Query: 70 LFCRQDFE 77
LFCR D +
Sbjct: 127 LFCRADHD 134
>UNIPROTKB|F1NBH3 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:HTEIGIY EMBL:AADN02006566
EMBL:AADN02006567 EMBL:AADN02006568 IPI:IPI00590236
Ensembl:ENSGALT00000009596 Uniprot:F1NBH3
Length = 147
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 63 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 121
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 122 LKNNMILCQTDYEE 135
>UNIPROTKB|Q2KIA3 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BC112712 IPI:IPI00722914 RefSeq:NP_001039802.1
UniGene:Bt.97510 ProteinModelPortal:Q2KIA3 SMR:Q2KIA3
Ensembl:ENSBTAT00000043044 GeneID:532870 KEGG:bta:532870 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
InParanoid:Q2KIA3 OMA:HTEIGIY OrthoDB:EOG405S2K NextBio:20875832
Uniprot:Q2KIA3
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|E2RHK8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
RefSeq:XP_003433617.1 ProteinModelPortal:E2RHK8
Ensembl:ENSCAFT00000020038 GeneID:486662 KEGG:cfa:486662
Uniprot:E2RHK8
Length = 156
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQTDYEE 144
>UNIPROTKB|J9NZN8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 OMA:HTEIGIY
EMBL:AAEX03015233 GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866550.2
Ensembl:ENSCAFT00000044444 Uniprot:J9NZN8
Length = 163
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 79 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 137
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 138 LKNNMILCQTDYEE 151
>UNIPROTKB|J9P4K0 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866536.1
ProteinModelPortal:J9P4K0 Ensembl:ENSCAFT00000048736 Uniprot:J9P4K0
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|B4DG90 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:55885
HOGENOM:HOG000232175 HOVERGEN:HBG054231 EMBL:AC007529 EMBL:AC007552
RefSeq:NP_001001395.1 UniGene:Hs.504908 DNASU:55885 GeneID:55885
KEGG:hsa:55885 HGNC:HGNC:6643 GenomeRNAi:55885 NextBio:61212
EMBL:AK294474 EMBL:AK316021 IPI:IPI00910185 RefSeq:NP_001230541.1
SMR:B4DG90 STRING:B4DG90 Ensembl:ENST00000541295 UCSC:uc010shy.2
Uniprot:B4DG90
Length = 163
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 79 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 137
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 138 LKNNMILCQTDYEE 151
>UNIPROTKB|Q8TAP4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 EMBL:CH471094 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:AB044745 EMBL:AB044746
EMBL:AK095595 EMBL:AK294909 EMBL:AC007529 EMBL:AC007552
EMBL:BC026311 EMBL:BC050085 IPI:IPI00744307 RefSeq:NP_001001395.1
RefSeq:NP_001230538.1 RefSeq:NP_001230539.1 RefSeq:NP_001230540.1
RefSeq:NP_001230542.1 RefSeq:NP_061110.2 UniGene:Hs.504908
ProteinModelPortal:Q8TAP4 SMR:Q8TAP4 IntAct:Q8TAP4
MINT:MINT-2874669 STRING:Q8TAP4 PhosphoSite:Q8TAP4 DMDM:34098603
PRIDE:Q8TAP4 DNASU:55885 Ensembl:ENST00000261169
Ensembl:ENST00000320122 Ensembl:ENST00000354662
Ensembl:ENST00000441439 Ensembl:ENST00000447609
Ensembl:ENST00000534946 Ensembl:ENST00000535535
Ensembl:ENST00000537304 Ensembl:ENST00000540445
Ensembl:ENST00000540848 Ensembl:ENST00000541846 GeneID:55885
KEGG:hsa:55885 UCSC:uc001rdk.2 GeneCards:GC12M016701 HGNC:HGNC:6643
MIM:180386 neXtProt:NX_Q8TAP4 PharmGKB:PA30409 InParanoid:Q8TAP4
PhylomeDB:Q8TAP4 GenomeRNAi:55885 NextBio:61212 ArrayExpress:Q8TAP4
Bgee:Q8TAP4 CleanEx:HS_LMO3 Genevestigator:Q8TAP4
GermOnline:ENSG00000048540 Uniprot:Q8TAP4
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|A9ED84 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:CU915363 EMBL:AB304400
RefSeq:NP_001106155.1 UniGene:Ssc.8086 SMR:A9ED84
Ensembl:ENSSSCT00000000642 GeneID:100127154 KEGG:ssc:100127154
eggNOG:NOG315878 Uniprot:A9ED84
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|Q9YH16 [details] [associations]
symbol:lmo3 "LIM domain only protein 3" species:8355
"Xenopus laevis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 HSSP:P61969 HOVERGEN:HBG054231
EMBL:U94991 EMBL:BC079734 RefSeq:NP_001084116.1 UniGene:Xl.6611
ProteinModelPortal:Q9YH16 SMR:Q9YH16 GeneID:399311 KEGG:xla:399311
CTD:399311 Xenbase:XB-GENE-6254052 Uniprot:Q9YH16
Length = 156
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQTDYEE 144
>MGI|MGI:102810 [details] [associations]
symbol:Lmo3 "LIM domain only 3" species:10090 "Mus musculus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
MGI:MGI:102810 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:55885 eggNOG:NOG316748 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AK034177 EMBL:BC057086 IPI:IPI00406211 RefSeq:NP_997105.1
UniGene:Mm.490545 ProteinModelPortal:Q8BZL8 SMR:Q8BZL8
STRING:Q8BZL8 PhosphoSite:Q8BZL8 PRIDE:Q8BZL8
Ensembl:ENSMUST00000161450 Ensembl:ENSMUST00000162772
Ensembl:ENSMUST00000163024 GeneID:109593 KEGG:mmu:109593
UCSC:uc009enl.1 InParanoid:Q8BZL8 NextBio:362405 Bgee:Q8BZL8
CleanEx:MM_LMO3 Genevestigator:Q8BZL8 GermOnline:ENSMUSG00000030226
Uniprot:Q8BZL8
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>RGD|1561357 [details] [associations]
symbol:RGD1561357 "similar to LIM domain only 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1561357 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 OMA:HTEIGIY IPI:IPI00480651
RefSeq:XP_003749911.1 ProteinModelPortal:F2Z3R1 SMR:F2Z3R1
Ensembl:ENSRNOT00000010623 GeneID:497798 KEGG:rno:497798 CTD:497798
Uniprot:F2Z3R1
Length = 145
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>ZFIN|ZDB-GENE-050522-201 [details] [associations]
symbol:lmo3 "LIM domain only 3" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-050522-201 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OMA:HTEIGIY EMBL:AL954848
IPI:IPI00855464 UniGene:Dr.85219 SMR:B0R1F5
Ensembl:ENSDART00000112860 Uniprot:B0R1F5
Length = 167
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 83 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFF 141
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 142 LKNNMILCQTDYEE 155
>ZFIN|ZDB-GENE-060728-1 [details] [associations]
symbol:lhx4 "LIM homeobox 4" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-060728-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 KO:K09374 HOVERGEN:HBG006263 CTD:89884
OMA:LSFRDDQ EMBL:BX294388 EMBL:CR381643 EMBL:CT025732
IPI:IPI00616255 RefSeq:NP_001116445.1 UniGene:Dr.92005
Ensembl:ENSDART00000057644 GeneID:571943 KEGG:dre:571943
NextBio:20890768 Uniprot:B0S5S7
Length = 391
Score = 172 (65.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S +V C F+ +G KCA C + P ++V +AQ VYHL CF CV+C + L G++
Sbjct: 73 SRAGNVYCKEDFFKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDE 132
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 133 FYLMEDGRLVCKEDYE 148
>UNIPROTKB|H0YKY2 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0021524 "visceral motor neuron differentiation" evidence=IEA]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0046872 GO:GO:0008270
GO:GO:0045665 GO:GO:0005622 Gene3D:2.10.110.10 GO:GO:0031290
EMBL:AC027243 GO:GO:0021520 GO:GO:0021524 HGNC:HGNC:18524
Ensembl:ENST00000558437 Bgee:H0YKY2 Uniprot:H0YKY2
Length = 145
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 58 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 117
>UNIPROTKB|F1NBH5 [details] [associations]
symbol:LOC100858792 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0045944 GO:GO:0000122 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:GSFETQV EMBL:AADN02030560
IPI:IPI00812377 Ensembl:ENSGALT00000009595 Uniprot:F1NBH5
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQMDYEE 144
>UNIPROTKB|Q0P5B3 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:BC120273 IPI:IPI00699115 RefSeq:NP_001069363.1
ProteinModelPortal:Q0P5B3 SMR:Q0P5B3 STRING:Q0P5B3
Ensembl:ENSBTAT00000045558 GeneID:527152 KEGG:bta:527152 CTD:4004
eggNOG:NOG288849 InParanoid:Q0P5B3 OMA:GSFETQV NextBio:20874528
Uniprot:Q0P5B3
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQMDYEE 144
>UNIPROTKB|E2RLZ2 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:4004 OMA:GSFETQV EMBL:AAEX03012888 RefSeq:XP_851199.1
ProteinModelPortal:E2RLZ2 Ensembl:ENSCAFT00000011097 GeneID:610473
KEGG:cfa:610473 Uniprot:E2RLZ2
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQMDYEE 144
>UNIPROTKB|E9PK83 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 EMBL:AC091013 HGNC:HGNC:6641 ChiTaRS:LMO1
IPI:IPI00979256 ProteinModelPortal:E9PK83 SMR:E9PK83
Ensembl:ENST00000534484 ArrayExpress:E9PK83 Bgee:E9PK83
Uniprot:E9PK83
Length = 145
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQMDYEE 133
>UNIPROTKB|E9PSF5 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:4004
EMBL:AC091013 UniGene:Hs.654426 GeneID:4004 KEGG:hsa:4004
HGNC:HGNC:6641 ChiTaRS:LMO1 IPI:IPI00877062 RefSeq:NP_001257357.1
ProteinModelPortal:E9PSF5 SMR:E9PSF5 Ensembl:ENST00000428101
UCSC:uc001mgh.1 ArrayExpress:E9PSF5 Bgee:E9PSF5 Uniprot:E9PSF5
Length = 155
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 71 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 129
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 130 LKNNMILCQMDYEE 143
>UNIPROTKB|P25800 [details] [associations]
symbol:LMO1 "Rhombotin-1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849 OMA:GSFETQV EMBL:M26682
EMBL:AJ277662 EMBL:AC091013 EMBL:BC069673 EMBL:BC069752
EMBL:BC069793 EMBL:BC096056 EMBL:BC096057 IPI:IPI00396316
PIR:A32795 RefSeq:NP_002306.1 UniGene:Hs.654426
ProteinModelPortal:P25800 SMR:P25800 STRING:P25800
PhosphoSite:P25800 DMDM:132532 PRIDE:P25800 DNASU:4004
Ensembl:ENST00000335790 GeneID:4004 KEGG:hsa:4004 UCSC:uc001mgg.1
GeneCards:GC11M008202 HGNC:HGNC:6641 MIM:186921 neXtProt:NX_P25800
PharmGKB:PA30407 InParanoid:P25800 ChiTaRS:LMO1 GenomeRNAi:4004
NextBio:15708 PMAP-CutDB:P25800 ArrayExpress:P25800 Bgee:P25800
CleanEx:HS_LMO1 Genevestigator:P25800 GermOnline:ENSG00000166407
Uniprot:P25800
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQMDYEE 144
>UNIPROTKB|Q3B8H4 [details] [associations]
symbol:lmo1 "Rhombotin-1" species:8355 "Xenopus laevis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:Q13642 HOVERGEN:HBG054231 CTD:4004
EMBL:BC106431 RefSeq:NP_001089735.1 UniGene:Xl.82232
ProteinModelPortal:Q3B8H4 SMR:Q3B8H4 GeneID:734798 KEGG:xla:734798
Uniprot:Q3B8H4
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQMDYEE 144
>ZFIN|ZDB-GENE-021115-6 [details] [associations]
symbol:lmo1 "LIM domain only 1" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-021115-6 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004 eggNOG:NOG288849
OMA:GSFETQV EMBL:AF398514 EMBL:BC092690 IPI:IPI00488481
RefSeq:NP_775326.1 UniGene:Dr.77277 ProteinModelPortal:Q8JFQ2
SMR:Q8JFQ2 STRING:Q8JFQ2 Ensembl:ENSDART00000044208 GeneID:280646
KEGG:dre:280646 InParanoid:Q8JFQ2 NextBio:20804856
ArrayExpress:Q8JFQ2 Bgee:Q8JFQ2 Uniprot:Q8JFQ2
Length = 155
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 71 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 129
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 130 LKNNMILCQMDYEE 143
>RGD|621166 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:621166
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:2.10.110.10 eggNOG:NOG316748 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K EMBL:AF353304 IPI:IPI00197708
UniGene:Rn.25503 ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5
UCSC:RGD:621166 InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|Q99MB5 [details] [associations]
symbol:Lmo3 "LIM domain only protein 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:621166 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 eggNOG:NOG316748
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AF353304 IPI:IPI00197708 UniGene:Rn.25503
ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5 UCSC:RGD:621166
InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 119
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 120 LKNNMILCQTDYEE 133
>UNIPROTKB|A9ED79 [details] [associations]
symbol:LMO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 HOVERGEN:HBG054231
CTD:4004 OMA:GSFETQV EMBL:FP340194 EMBL:AB304399
RefSeq:NP_001106526.1 SMR:A9ED79 Ensembl:ENSSSCT00000022371
GeneID:100127356 KEGG:ssc:100127356 Uniprot:A9ED79
Length = 156
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQLDYEE 144
>MGI|MGI:102812 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 MGI:MGI:102812
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K CTD:4004
eggNOG:NOG288849 OMA:GSFETQV EMBL:AJ296304 EMBL:BC053074
IPI:IPI00410856 RefSeq:NP_476514.1 UniGene:Mm.360145
ProteinModelPortal:Q924W9 SMR:Q924W9 STRING:Q924W9
PhosphoSite:Q924W9 PRIDE:Q924W9 Ensembl:ENSMUST00000036992
GeneID:109594 KEGG:mmu:109594 InParanoid:Q924W9 NextBio:362409
Bgee:Q924W9 CleanEx:MM_LMO1 Genevestigator:Q924W9
GermOnline:ENSMUSG00000036111 Uniprot:Q924W9
Length = 156
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
+ C RL+G CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 72 ILCRRDYLRLFGTTGNCAACS-KLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF 130
Query: 65 LRSGQLFCRQDFEK 78
L++ + C+ D+E+
Sbjct: 131 LKNNMILCQVDYEE 144
>UNIPROTKB|P53410 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671 EMBL:L35568
IPI:IPI00574086 PIR:I50370 UniGene:Gga.790
ProteinModelPortal:P53410 SMR:P53410 Uniprot:P53410
Length = 319
Score = 168 (64.2 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ HVYHL CF C C + L G+QF LR L CR D
Sbjct: 46 RLFGIKCAQCRAAFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRAD 105
>UNIPROTKB|Q5ISK2 [details] [associations]
symbol:Q5ISK2 "LIM homeobox protein 1" species:9541 "Macaca
fascicularis" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0001657 "ureteric bud development"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001705 "ectoderm formation" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0008045 "motor
neuron axon guidance" evidence=ISS] [GO:0009653 "anatomical
structure morphogenesis" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009880 "embryonic pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009952 "anterior/posterior
pattern specification" evidence=ISS] [GO:0009953 "dorsal/ventral
pattern formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY650378 ProteinModelPortal:Q5ISK2
Uniprot:Q5ISK2
Length = 403
Score = 158 (60.7 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 41 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 100
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 101 LYIIDENKFVCKEDYLSNSSVAKENS 126
Score = 47 (21.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 182 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 241
Query: 166 PCRK 169
R+
Sbjct: 242 GARR 245
>ZFIN|ZDB-GENE-040426-1099 [details] [associations]
symbol:zgc:56628 "zgc:56628" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-040426-1099
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:BX927330 EMBL:BC049054
IPI:IPI00512792 RefSeq:NP_956566.1 UniGene:Dr.18443 SMR:Q7ZUG7
Ensembl:ENSDART00000022112 GeneID:393242 KEGG:dre:393242
OMA:TELRTCV NextBio:20814305 Uniprot:Q7ZUG7
Length = 172
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C CG + +EMVMRAQ +V+H+ CFVC IC L G++F
Sbjct: 82 ILCKSDYLRLFGHSGACRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHY 141
Query: 66 RSGQLFCRQD 75
+G+L+C +D
Sbjct: 142 ANGKLYCERD 151
>UNIPROTKB|A7Z015 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008045 "motor neuron axon guidance" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0060429 "epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0010842 "retina layer
formation" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0021937 "cerebellar
Purkinje cell-granule cell precursor cell signaling involved in
regulation of granule cell precursor cell proliferation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009791 "post-embryonic development" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0007267
"cell-cell signaling" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0001822 "kidney development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0001702 "gastrulation with
mouth forming second" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=ISS] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0035852 "horizontal cell localization"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001658
"branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001658 GO:GO:0001657
GO:GO:0021527 GO:GO:0021702 GO:GO:0060068 GO:GO:0021537
GO:GO:0001823 GO:GO:0090009 GO:GO:0060059 GO:GO:0048793
GO:GO:2000768 GO:GO:0048703 GO:GO:0060322 GO:GO:0001071
GO:GO:0021517 GO:GO:0001706 GO:GO:0032525 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:DAAA02048434 EMBL:BC153212 IPI:IPI00711186
RefSeq:NP_001098917.1 RefSeq:XP_003583582.1 UniGene:Bt.104440
Ensembl:ENSBTAT00000047689 GeneID:616699 GeneID:786041
KEGG:bta:616699 KEGG:bta:786041 InParanoid:A7Z015 NextBio:20927654
Uniprot:A7Z015
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|E2RMA8 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060429 "epithelium development"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0009880
"embryonic pattern specification" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:2000543
"positive regulation of gastrulation" evidence=ISS] [GO:0040019
"positive regulation of embryonic development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009653 "anatomical structure
morphogenesis" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0007267 "cell-cell signaling"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA]
[GO:0072283 "metanephric renal vesicle morphogenesis" evidence=IEA]
[GO:0048793 "pronephros development" evidence=IEA] [GO:0035852
"horizontal cell localization" evidence=IEA] [GO:0035849 "nephric
duct elongation" evidence=IEA] [GO:0032525 "somite rostral/caudal
axis specification" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0008045 GO:GO:0006366 GO:GO:0009791 GO:GO:0090190
GO:GO:0010842 GO:GO:0009953 GO:GO:0040019 GO:GO:0009880
GO:GO:0001658 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852 GO:GO:0072283
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:AAEX03006612
RefSeq:XP_003639347.1 ProteinModelPortal:E2RMA8 SMR:E2RMA8
Ensembl:ENSCAFT00000028326 GeneID:100856649 KEGG:cfa:100856649
NextBio:20895890 Uniprot:E2RMA8
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|P48742 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0021537 "telencephalon development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0035502 "metanephric part of
ureteric bud development" evidence=IEA] [GO:0035849 "nephric duct
elongation" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0044344 "cellular response to
fibroblast growth factor stimulus" evidence=IEA] [GO:0048793
"pronephros development" evidence=IEA] [GO:0072177 "mesonephric
duct development" evidence=IEA] [GO:0072224 "metanephric glomerulus
development" evidence=IEA] [GO:0072278 "metanephric comma-shaped
body morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal
vesicle morphogenesis" evidence=IEA] [GO:0072284 "metanephric
S-shaped body morphogenesis" evidence=IEA] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0001655 "urogenital system development" evidence=ISS]
[GO:0001657 "ureteric bud development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0021549
"cerebellum development" evidence=ISS] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072049 "comma-shaped body morphogenesis"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:0072077 "renal vesicle morphogenesis"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0048646 "anatomical structure formation involved in
morphogenesis" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=ISS] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0060429 "epithelium development"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0007399
"nervous system development" evidence=TAS] [GO:0009887 "organ
morphogenesis" evidence=TAS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0060068 GO:GO:0021537 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG EMBL:U14755 EMBL:AC023315
EMBL:AC025882 EMBL:BC111936 EMBL:BC101674 IPI:IPI00550117
PIR:G01507 RefSeq:NP_005559.2 UniGene:Hs.443727
ProteinModelPortal:P48742 SMR:P48742 STRING:P48742
PhosphoSite:P48742 DMDM:60416412 PaxDb:P48742 PRIDE:P48742
DNASU:3975 Ensembl:ENST00000254457 GeneID:3975 KEGG:hsa:3975
UCSC:uc002hnh.2 GeneCards:GC17P035294 HGNC:HGNC:6593 HPA:CAB002770
MIM:601999 neXtProt:NX_P48742 PharmGKB:PA30364 InParanoid:P48742
PhylomeDB:P48742 GenomeRNAi:3975 NextBio:15580 ArrayExpress:P48742
Bgee:P48742 CleanEx:HS_LHX1 Genevestigator:P48742
GermOnline:ENSG00000132130 GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 Uniprot:P48742
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|F2Z531 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000543 "positive regulation of
gastrulation" evidence=IEA] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0090009 "primitive streak formation" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] [GO:0060322 "head
development" evidence=IEA] [GO:0060068 "vagina development"
evidence=IEA] [GO:0060067 "cervix development" evidence=IEA]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=IEA] [GO:0048793 "pronephros development" evidence=IEA]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0040019 "positive regulation of embryonic
development" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0035849 "nephric duct elongation"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0021871 "forebrain regionalization" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008045
"motor neuron axon guidance" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0001706 "endoderm formation"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0045892 GO:GO:0001764 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0021517 GO:GO:0001706 GO:GO:0032525
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:CU929499 RefSeq:XP_003131754.1 UniGene:Ssc.22980
ProteinModelPortal:F2Z531 SMR:F2Z531 Ensembl:ENSSSCT00000019256
GeneID:100513681 KEGG:ssc:100513681 Uniprot:F2Z531
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|P63008 [details] [associations]
symbol:Lhx1 "LIM/homeobox protein Lhx1" species:10036
"Mesocricetus auratus" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:X81407 PIR:I48186
ProteinModelPortal:P63008 SMR:P63008 Uniprot:P63008
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|Q5IS44 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9598 "Pan
troglodytes" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665284 RefSeq:NP_001029088.1
UniGene:Ptr.6553 ProteinModelPortal:Q5IS44 SMR:Q5IS44 GeneID:454600
KEGG:ptr:454600 InParanoid:Q5IS44 NextBio:20836212 Uniprot:Q5IS44
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|Q5IS89 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:39432
"Saimiri boliviensis boliviensis" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665239 RefSeq:XP_003929119.1
ProteinModelPortal:Q5IS89 SMR:Q5IS89 GeneID:101033157
Uniprot:Q5IS89
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>MGI|MGI:99783 [details] [associations]
symbol:Lhx1 "LIM homeobox protein 1" species:10090 "Mus
musculus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IGI;IMP] [GO:0001655 "urogenital system
development" evidence=IMP] [GO:0001657 "ureteric bud development"
evidence=IMP] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001705 "ectoderm formation" evidence=IGI]
[GO:0001706 "endoderm formation" evidence=IMP] [GO:0001764 "neuron
migration" evidence=IMP] [GO:0001822 "kidney development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007267 "cell-cell
signaling" evidence=IGI] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007389 "pattern specification
process" evidence=IGI;IMP] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=IMP]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0009880
"embryonic pattern specification" evidence=IGI] [GO:0009948
"anterior/posterior axis specification" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IGI]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0021527
"spinal cord association neuron differentiation" evidence=IGI]
[GO:0021549 "cerebellum development" evidence=IGI] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IGI]
[GO:0021871 "forebrain regionalization" evidence=IGI] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IMP] [GO:0035846 "oviduct epithelium
development" evidence=IMP] [GO:0035847 "uterine epithelium
development" evidence=IMP] [GO:0035849 "nephric duct elongation"
evidence=IMP] [GO:0035852 "horizontal cell localization"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0043234 "protein complex"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=IGI;IMP] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=IMP] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=IMP]
[GO:0060065 "uterus development" evidence=IMP] [GO:0060066 "oviduct
development" evidence=IMP] [GO:0060067 "cervix development"
evidence=IMP] [GO:0060068 "vagina development" evidence=IMP]
[GO:0060322 "head development" evidence=IGI] [GO:0060429
"epithelium development" evidence=IMP] [GO:0061205 "paramesonephric
duct development" evidence=IMP] [GO:0072001 "renal system
development" evidence=IGI] [GO:0072049 "comma-shaped body
morphogenesis" evidence=IMP] [GO:0072050 "S-shaped body
morphogenesis" evidence=IMP] [GO:0072077 "renal vesicle
morphogenesis" evidence=IMP] [GO:0072178 "nephric duct
morphogenesis" evidence=IMP] [GO:0090009 "primitive streak
formation" evidence=IMP] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IMP]
[GO:2000543 "positive regulation of gastrulation" evidence=IMP]
[GO:2000744 "positive regulation of anterior head development"
evidence=IMP] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
MGI:MGI:99783 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0044344
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0021517
GO:GO:0001706 GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GO:GO:0072049 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG
GO:GO:0060067 GO:GO:0035852 GO:GO:0072177 GO:GO:0072278
GO:GO:0072283 GO:GO:0072284 GO:GO:0035849 GO:GO:0035846
GO:GO:0035847 EMBL:Z27410 EMBL:S68107 EMBL:AF039706 EMBL:AF039705
IPI:IPI00119516 PIR:I48637 RefSeq:NP_032524.1 UniGene:Mm.4965
ProteinModelPortal:P63006 SMR:P63006 STRING:P63006 PRIDE:P63006
Ensembl:ENSMUST00000018842 GeneID:16869 KEGG:mmu:16869
InParanoid:P63006 NextBio:290830 Bgee:P63006 CleanEx:MM_LHX1
Genevestigator:P63006 GermOnline:ENSMUSG00000018698 Uniprot:P63006
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>RGD|71074 [details] [associations]
symbol:Lhx1 "LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISO;ISS] [GO:0001655 "urogenital system development"
evidence=ISO;ISS] [GO:0001657 "ureteric bud development"
evidence=ISO;ISS] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISO;ISS] [GO:0001705 "ectoderm formation"
evidence=ISO;ISS] [GO:0001706 "endoderm formation" evidence=ISO;ISS]
[GO:0001764 "neuron migration" evidence=ISO;ISS] [GO:0001822 "kidney
development" evidence=ISO;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007267 "cell-cell signaling"
evidence=ISO;ISS] [GO:0007389 "pattern specification process"
evidence=ISO;ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISO;ISS]
[GO:0009791 "post-embryonic development" evidence=ISO;ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISO;ISS]
[GO:0009948 "anterior/posterior axis specification"
evidence=ISO;ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO;ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISO;ISS] [GO:0010468 "regulation of gene
expression" evidence=ISO;ISS] [GO:0010842 "retina layer formation"
evidence=ISO;ISS] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISO;ISS] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021549 "cerebellum development"
evidence=ISO;ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISO;ISS] [GO:0021871 "forebrain
regionalization" evidence=ISO;ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=ISO;ISS]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA;ISO] [GO:0035502 "metanephric part of ureteric bud
development" evidence=IEP] [GO:0035846 "oviduct epithelium
development" evidence=ISO;ISS] [GO:0035847 "uterine epithelium
development" evidence=ISO;ISS] [GO:0035849 "nephric duct elongation"
evidence=IEA;ISO] [GO:0035852 "horizontal cell localization"
evidence=IEA;ISO] [GO:0040019 "positive regulation of embryonic
development" evidence=ISO;ISS] [GO:0043234 "protein complex"
evidence=ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044344 "cellular response to fibroblast growth
factor stimulus" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=ISO;ISS] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISO;ISS] [GO:0048793
"pronephros development" evidence=IEA] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISO;ISS] [GO:0060065
"uterus development" evidence=ISO;ISS] [GO:0060066 "oviduct
development" evidence=ISO;ISS] [GO:0060067 "cervix development"
evidence=ISO;ISS] [GO:0060068 "vagina development" evidence=ISO;ISS]
[GO:0060322 "head development" evidence=ISO;ISS] [GO:0060429
"epithelium development" evidence=ISO;ISS] [GO:0061205
"paramesonephric duct development" evidence=ISO;ISS] [GO:0072001
"renal system development" evidence=ISO] [GO:0072049 "comma-shaped
body morphogenesis" evidence=ISO;ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISO;ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISO;ISS] [GO:0072164 "mesonephric tubule
development" evidence=IEP] [GO:0072177 "mesonephric duct
development" evidence=IEP] [GO:0072178 "nephric duct morphogenesis"
evidence=ISO;ISS] [GO:0072224 "metanephric glomerulus development"
evidence=IEP] [GO:0072278 "metanephric comma-shaped body
morphogenesis" evidence=IEP] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEP] [GO:0090009 "primitive streak
formation" evidence=ISO;ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISO;ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISO;ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISO;ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISO;ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71074 GO:GO:0005634 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0090009 GO:GO:0060059
GO:GO:0035502 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GeneTree:ENSGT00700000104177 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:S71523
IPI:IPI00199573 RefSeq:NP_665887.3 UniGene:Rn.127825
ProteinModelPortal:P63007 SMR:P63007 STRING:P63007
PhosphoSite:P63007 PRIDE:P63007 Ensembl:ENSRNOT00000003799
GeneID:257634 KEGG:rno:257634 InParanoid:P63007 NextBio:624166
Genevestigator:P63007 GermOnline:ENSRNOG00000002812 Uniprot:P63007
Length = 406
Score = 158 (60.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSS 87
+I+ + C++D+ + +++S
Sbjct: 104 LYIIDENKFVCKEDYLSNSSVAKENS 129
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>FB|FBgn0026411 [details] [associations]
symbol:Lim1 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern
formation" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005525
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003924
GO:GO:0006184 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007480 GO:GO:0007479 FlyBase:FBgn0260444
HSSP:P06601 GeneTree:ENSGT00700000104177 eggNOG:NOG257130 KO:K09372
EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 UniGene:Dm.3025
SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:Q9V472
EnsemblMetazoa:FBtr0071279 GeneID:31813 KEGG:dme:Dmel_CG11354
UCSC:CG11354-RA CTD:31813 FlyBase:FBgn0026411 InParanoid:Q9V472
OMA:GARKMRG OrthoDB:EOG48W9H7 GenomeRNAi:31813 NextBio:775444
Uniprot:Q9V472
Length = 505
Score = 160 (61.4 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S S + C FR YG KC+ CG + P ++V + + V+HL CF C IC + L GEQ
Sbjct: 67 SRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQ 126
Query: 63 -FILRSGQLFCRQDF 76
++L + C+ D+
Sbjct: 127 LYVLDDNKFICKDDY 141
Score = 47 (21.6 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKVSTMNSK------RAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + +K R + N+R + + +I+SM
Sbjct: 252 TTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSM 311
>UNIPROTKB|F1NX79 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0090009
"primitive streak formation" evidence=IEA] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:2000543 "positive regulation of gastrulation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021871 "forebrain
regionalization" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0035852 "horizontal cell localization" evidence=IEA]
[GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0060059 "embryonic retina morphogenesis in
camera-type eye" evidence=IEA] [GO:0060067 "cervix development"
evidence=IEA] [GO:0060068 "vagina development" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0006366
GO:GO:0090190 GO:GO:0040019 GO:GO:2000768 GO:GO:2000543
GeneTree:ENSGT00700000104177 IPI:IPI00581331 GO:GO:0021937
GO:GO:2000744 OMA:PSEMNEG EMBL:AADN02025742 EMBL:AADN02025743
EMBL:AADN02025744 Ensembl:ENSGALT00000008686 Uniprot:F1NX79
Length = 406
Score = 156 (60.0 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+I+ + C++D+
Sbjct: 104 LYIIDENKFVCKEDY 118
Score = 48 (22.0 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 DARR 248
>ZFIN|ZDB-GENE-010702-1 [details] [associations]
symbol:lmo4a "LIM domain only 4a" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0030900 "forebrain
development" evidence=IMP;IDA] [GO:0031076 "embryonic camera-type
eye development" evidence=IMP;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-010702-1 GO:GO:0046872
GO:GO:0008270 GO:GO:0030900 Gene3D:2.10.110.10 GO:GO:0031076
GeneTree:ENSGT00700000104177 HSSP:P70662 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OMA:DRYWHTR EMBL:CR855258
EMBL:BC045835 EMBL:AY028903 IPI:IPI00495249 RefSeq:NP_817093.1
UniGene:Dr.107376 SMR:Q8QG63 STRING:Q8QG63
Ensembl:ENSDART00000085219 GeneID:114412 KEGG:dre:114412 CTD:114412
InParanoid:Q8QG63 OrthoDB:EOG4T4CWR NextBio:20796903 Uniprot:Q8QG63
Length = 167
Score = 150 (57.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 3 SHNSHVSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKG 60
S + C RL+G C+ CG + EMVMRAQ +VYHL CF C C L G
Sbjct: 67 SKGGMILCRNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLVPG 126
Query: 61 EQFILRSGQLFCRQDFEKEMYLMQQSSP--SDDMMLDE 96
++F +G +FC D L +P S+ ++ D+
Sbjct: 127 DRFHYVNGTIFCEHDRPGGALLSSHLTPLQSNTLLPDQ 164
>UNIPROTKB|P53411 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048703 "embryonic viscerocranium morphogenesis"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS;NAS] [GO:0090190
"positive regulation of branching involved in ureteric bud
morphogenesis" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009948 "anterior/posterior axis specification" evidence=ISS]
[GO:0009952 "anterior/posterior pattern specification"
evidence=ISS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=ISS] [GO:0021549 "cerebellum development" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0072049 "comma-shaped body morphogenesis" evidence=ISS]
[GO:0072050 "S-shaped body morphogenesis" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0021517 "ventral spinal cord development"
evidence=IEP] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0060429 "epithelium
development" evidence=ISS] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEP] [GO:0008045 "motor neuron axon
guidance" evidence=IDA] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:2000543 "positive
regulation of gastrulation" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0010468 "regulation
of gene expression" evidence=ISS] [GO:0021527 "spinal cord
association neuron differentiation" evidence=ISS] [GO:0072179
"nephric duct formation" evidence=NAS] [GO:2001141 "regulation of
RNA biosynthetic process" evidence=NAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021522 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 EMBL:L35569
IPI:IPI00581331 PIR:I50375 RefSeq:NP_990744.1 UniGene:Gga.789
ProteinModelPortal:P53411 SMR:P53411 STRING:P53411 GeneID:396381
KEGG:gga:396381 CTD:3975 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 InParanoid:P53411 KO:K09372 OrthoDB:EOG405S1F
NextBio:20816423 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 Uniprot:P53411
Length = 406
Score = 156 (60.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+I+ + C++D+
Sbjct: 104 LYIIDENKFVCKEDY 118
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|F1MFM7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021526
CTD:89884 OMA:LSFRDDQ EMBL:DAAA02043487 EMBL:DAAA02043488
EMBL:DAAA02043489 EMBL:DAAA02043490 IPI:IPI00695061
RefSeq:NP_001179714.1 UniGene:Bt.60930 Ensembl:ENSBTAT00000005216
GeneID:540797 KEGG:bta:540797 NextBio:20878839 Uniprot:F1MFM7
Length = 390
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KC C + P ++V +AQ VYHL CF C+IC + L G++
Sbjct: 70 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 130 FYLMEDGRLVCKEDYE 145
>UNIPROTKB|Q969G2 [details] [associations]
symbol:LHX4 "LIM/homeobox protein Lhx4" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 EMBL:AL139141 Orphanet:226307
Orphanet:95496 eggNOG:NOG275246 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0 GO:GO:0021526 EMBL:AY053457
EMBL:AF179849 EMBL:AF405430 EMBL:AF405425 EMBL:AF405426
EMBL:AF405427 EMBL:AF405428 EMBL:AF405429 EMBL:BC011759
EMBL:AB055703 EMBL:AB037683 EMBL:AF282899 EMBL:AH011598
IPI:IPI00169275 RefSeq:NP_203129.1 UniGene:Hs.658487
ProteinModelPortal:Q969G2 SMR:Q969G2 IntAct:Q969G2 STRING:Q969G2
DMDM:209572644 PRIDE:Q969G2 DNASU:89884 Ensembl:ENST00000263726
GeneID:89884 KEGG:hsa:89884 UCSC:uc001goe.2 CTD:89884
GeneCards:GC01P180199 HGNC:HGNC:21734 MIM:262700 MIM:602146
neXtProt:NX_Q969G2 Orphanet:85442 PharmGKB:PA134962876
InParanoid:Q969G2 OMA:LSFRDDQ PhylomeDB:Q969G2 GenomeRNAi:89884
NextBio:76401 ArrayExpress:Q969G2 Bgee:Q969G2 CleanEx:HS_LHX4
Genevestigator:Q969G2 GermOnline:ENSG00000121454 Uniprot:Q969G2
Length = 390
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KC C + P ++V +AQ VYHL CF C+IC + L G++
Sbjct: 70 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 130 FYLMEDGRLVCKEDYE 145
>MGI|MGI:101776 [details] [associations]
symbol:Lhx4 "LIM homeobox protein 4" species:10090 "Mus
musculus" [GO:0001890 "placenta development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IGI] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101776 GO:GO:0005634 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 PDB:3MMK PDBsum:3MMK HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0
GO:GO:0021526 CTD:89884 OMA:LSFRDDQ EMBL:BC049834 EMBL:AF135415
EMBL:U89343 EMBL:S71659 IPI:IPI00134772 PIR:S46332
RefSeq:NP_034842.2 UniGene:Mm.103624 UniGene:Mm.351266
ProteinModelPortal:P53776 SMR:P53776 STRING:P53776 PRIDE:P53776
Ensembl:ENSMUST00000027740 GeneID:16872 KEGG:mmu:16872
UCSC:uc007dbn.2 InParanoid:P53776 NextBio:290842 Bgee:P53776
CleanEx:MM_LHX4 Genevestigator:P53776 GermOnline:ENSMUSG00000026468
Uniprot:P53776
Length = 390
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KC C + P ++V +AQ VYHL CF C+IC + L G++
Sbjct: 70 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 130 FYLMEDGRLVCKEDYE 145
>UNIPROTKB|F1PCI5 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 GeneTree:ENSGT00700000104177
GO:GO:0021526 OMA:LSFRDDQ EMBL:AAEX03005118 EMBL:AAEX03005119
Ensembl:ENSCAFT00000031328 Uniprot:F1PCI5
Length = 395
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KC C + P ++V +AQ VYHL CF C+IC + L G++
Sbjct: 75 SRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 134
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ G+L C++D+E
Sbjct: 135 FYLMEDGRLVCKEDYE 150
>UNIPROTKB|B7ZP59 [details] [associations]
symbol:lhx1 "Homeobox protein" species:8355 "Xenopus
laevis" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0090009 GO:GO:0060059 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0072178 GO:GO:0061205 GO:GO:2000744 GO:GO:0072077
RefSeq:NP_001084128.1 UniGene:Xl.32655 GeneID:399323
KEGG:xla:399323 Xenbase:XB-GENE-856460 EMBL:BC169338 EMBL:BC169340
SMR:B7ZP59 Uniprot:B7ZP59
Length = 403
Score = 155 (59.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+I+ + C++D+
Sbjct: 104 LYIIDENKFVCKEDY 118
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 166 PCRK 169
R+
Sbjct: 244 GARR 247
>UNIPROTKB|P29674 [details] [associations]
symbol:lhx1 "LIM/homeobox protein Lhx1" species:8355
"Xenopus laevis" [GO:0003002 "regionalization" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0009798 "axis specification" evidence=IMP] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0030903 "notochord
development" evidence=IMP] [GO:0035565 "regulation of pronephros
size" evidence=IGI] [GO:0039003 "pronephric field specification"
evidence=IGI] [GO:0039020 "pronephric nephron tubule development"
evidence=IGI] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043009 "chordate embryonic development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0048793 "pronephros development" evidence=IGI;IMP] [GO:0072080
"nephron tubule development" evidence=IGI] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0022008 GO:GO:0009952 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0042074 GO:GO:0009798 GO:GO:0043009
GO:GO:0030903 GO:GO:0039020 GO:GO:0035565 CTD:3975
HOVERGEN:HBG006263 KO:K09372 EMBL:X63889 EMBL:AF013242 PIR:S23802
RefSeq:NP_001084128.1 UniGene:Xl.32655 ProteinModelPortal:P29674
SMR:P29674 GeneID:399323 KEGG:xla:399323 Xenbase:XB-GENE-856460
GO:GO:0039003 Uniprot:P29674
Length = 403
Score = 155 (59.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+I+ + C++D+
Sbjct: 104 LYIIDENKFVCKEDY 118
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 166 PCRK 169
R+
Sbjct: 244 GARR 247
>ZFIN|ZDB-GENE-980526-347 [details] [associations]
symbol:lhx1a "LIM homeobox 1a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001071 "nucleic acid
binding transcription factor activity" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0043234
"protein complex" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0060059 "embryonic
retina morphogenesis in camera-type eye" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072178
"nephric duct morphogenesis" evidence=ISS] [GO:0090009 "primitive
streak formation" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0021871 "forebrain regionalization"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-347 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 EMBL:L37802 IPI:IPI00485723 RefSeq:NP_571291.1
UniGene:Dr.364 ProteinModelPortal:Q90476 SMR:Q90476 STRING:Q90476
Ensembl:ENSDART00000005641 GeneID:30463 KEGG:dre:30463 CTD:30463
InParanoid:Q90476 OMA:PSEMNEG NextBio:20806857 ArrayExpress:Q90476
Bgee:Q90476 Uniprot:Q90476
Length = 405
Score = 155 (59.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P+++V RA+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+I+ + C+ D+
Sbjct: 104 LYIIDENKFVCKDDY 118
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 166 PCRK 169
R+
Sbjct: 244 GARR 247
>UNIPROTKB|P36200 [details] [associations]
symbol:lhx3 "LIM/homeobox protein Lhx3" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 KO:K09374 HOVERGEN:HBG006263
CTD:8022 EMBL:Z22702 EMBL:Z11589 PIR:S38821 RefSeq:NP_001081623.1
UniGene:Xl.32 ProteinModelPortal:P36200 SMR:P36200 GeneID:397959
KEGG:xla:397959 Xenbase:XB-GENE-865930 Uniprot:P36200
Length = 395
Score = 165 (63.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF C++C + L G++
Sbjct: 68 SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDE 127
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 128 FYLMEDSRLVCKADYE 143
>UNIPROTKB|Q9H2C1 [details] [associations]
symbol:LHX5 "LIM/homeobox protein Lhx5" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=IEA] [GO:0021766 "hippocampus
development" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846
GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AF291181 EMBL:BC109230
IPI:IPI00022760 RefSeq:NP_071758.1 UniGene:Hs.302029
ProteinModelPortal:Q9H2C1 SMR:Q9H2C1 STRING:Q9H2C1
PhosphoSite:Q9H2C1 DMDM:18202938 PRIDE:Q9H2C1
Ensembl:ENST00000261731 GeneID:64211 KEGG:hsa:64211 UCSC:uc001tvj.1
GeneCards:GC12M113900 HGNC:HGNC:14216 MIM:605992 neXtProt:NX_Q9H2C1
PharmGKB:PA30367 InParanoid:Q9H2C1 PhylomeDB:Q9H2C1
GenomeRNAi:64211 NextBio:66119 Bgee:Q9H2C1 CleanEx:HS_LHX5
Genevestigator:Q9H2C1 GermOnline:ENSG00000089116 Uniprot:Q9H2C1
Length = 402
Score = 153 (58.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 140
Score = 49 (22.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRKVGVHGHYLS------LGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSF 218
R+ H + S LG L D S+ + ST P Y D YA SN F
Sbjct: 245 GARR---HAFFRSPRRMRPLGGRL-DESEML--GST-PYTYYGDYQ-GDYYAPGSNYDF 295
>ZFIN|ZDB-GENE-980526-562 [details] [associations]
symbol:isl2a "islet2a" species:7955 "Danio rerio"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IGI;IMP] [GO:0048665 "neuron fate specification"
evidence=IGI;IMP] [GO:0048675 "axon extension" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-562 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0048665 GeneTree:ENSGT00700000104050
GO:GO:0048676 eggNOG:COG5576 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38453 EMBL:X88805
EMBL:U09403 IPI:IPI00483445 PIR:I51734 RefSeq:NP_571045.1
UniGene:Dr.281 ProteinModelPortal:P53406 SMR:P53406
Ensembl:ENSDART00000012862 GeneID:30157 KEGG:dre:30157 CTD:30157
InParanoid:P53406 OMA:RHDSAVQ NextBio:20806628 ArrayExpress:P53406
Bgee:P53406 Uniprot:P53406
Length = 359
Score = 164 (62.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ +VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRAD 142
Query: 76 FEKEMYLMQQSSP 88
M SP
Sbjct: 143 HGLLMERASAGSP 155
>UNIPROTKB|Q5FVB2 [details] [associations]
symbol:lmo4.1 "LIM domain transcription factor LMO4.1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 EMBL:BC090104 RefSeq:NP_001015822.1
UniGene:Str.52903 ProteinModelPortal:Q5FVB2 SMR:Q5FVB2
Ensembl:ENSXETT00000050669 GeneID:548539 KEGG:xtr:548539 CTD:548539
Xenbase:XB-GENE-479327 eggNOG:NOG314117 InParanoid:Q5FVB2
OMA:DRYWHTR OrthoDB:EOG4XKV82 Bgee:Q5FVB2 Uniprot:Q5FVB2
Length = 167
Score = 147 (56.8 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + EMVMRAQ VYHL CF C C L G++F
Sbjct: 72 ILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHY 131
Query: 66 RSGQLFCRQD 75
+G +FC D
Sbjct: 132 VNGAIFCEHD 141
>ZFIN|ZDB-GENE-980526-116 [details] [associations]
symbol:lhx1b "LIM homeobox 1b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-116 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HSSP:P06601 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
EMBL:BX255908 EMBL:AF001299 EMBL:BC162280 EMBL:BC162303
IPI:IPI00505711 RefSeq:NP_571282.1 UniGene:Dr.277
Ensembl:ENSDART00000021159 GeneID:30454 KEGG:dre:30454 CTD:30454
InParanoid:O13106 OrthoDB:EOG49CQ7Z NextBio:20806849 Uniprot:O13106
Length = 402
Score = 154 (59.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR YG KC C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 44 SREGRLYCKNDFFRRYGTKCGGCAQGISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDF 76
+IL + C++D+
Sbjct: 104 LYILDEYKFVCKEDY 118
Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 183 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 242
Query: 166 PCRK 169
R+
Sbjct: 243 GARR 246
>UNIPROTKB|P53412 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0000988 eggNOG:NOG275246
GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 EMBL:L35570 IPI:IPI00651346 PIR:I50376
RefSeq:NP_001025506.1 UniGene:Gga.91 ProteinModelPortal:P53412
SMR:P53412 STRING:P53412 Ensembl:ENSGALT00000002663 GeneID:373940
KEGG:gga:373940 CTD:8022 InParanoid:P53412 OMA:PLCAGCN
NextBio:20813472 ArrayExpress:P53412 Uniprot:P53412
Length = 395
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF C++C + L G++
Sbjct: 68 SRGDGVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 128 FYLMEDSRLVCKADYE 143
>ZFIN|ZDB-GENE-040624-1 [details] [associations]
symbol:isl1l "islet1, like" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-040624-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671
HOGENOM:HOG000236304 eggNOG:NOG295777 EMBL:AY423019 IPI:IPI00495237
RefSeq:NP_001002043.1 UniGene:Dr.156646 ProteinModelPortal:Q6TEN0
SMR:Q6TEN0 GeneID:415131 KEGG:dre:415131 CTD:415131
NextBio:20818810 Uniprot:Q6TEN0
Length = 323
Score = 162 (62.1 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
C RL KCA+C + E VMR+Q ++YH+ CF C C +PL G++++L+ GQ
Sbjct: 69 CREHYSRLSTSKCAKCDKAFISKEFVMRSQVNIYHVQCFRCEGCNRPLLSGDEYVLQDGQ 128
Query: 70 LFCRQDFEKEMY--LMQQSS---PSDDMMLDENCXXXXXXXXXXXXX-TILTSAQRRQFK 123
L C K M + QQ PS+++ + T+L+ Q +
Sbjct: 129 LLCTDHHNKLMSASINQQKEAGDPSEEIKSTLSWSSMQRRSERATRVRTVLSETQLCMLQ 188
Query: 124 SSFEVSPKP 132
+ + +P+P
Sbjct: 189 TCYTANPRP 197
>UNIPROTKB|E1BYB0 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02012827 EMBL:AADN02012828
IPI:IPI00819278 Ensembl:ENSGALT00000010105 ArrayExpress:E1BYB0
Uniprot:E1BYB0
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|F1P113 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0001843
"neural tube closure" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0021522 "spinal cord
motor neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0006366 GO:GO:0001158 GO:GO:0042659
GeneTree:ENSGT00700000104177 OMA:ALSWKRC GO:GO:0050865
EMBL:AADN02012827 EMBL:AADN02012828 IPI:IPI00582860
Ensembl:ENSGALT00000033333 ArrayExpress:F1P113 Uniprot:F1P113
Length = 174
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 80 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 139
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 140 INGSLFCEHD 149
>UNIPROTKB|Q3SWZ8 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9913 "Bos taurus" [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0048538 "thymus development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0042659
"regulation of cell fate specification" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEA] [GO:0021514 "ventral spinal cord
interneuron differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003281 "ventricular septum development" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0001158 GO:GO:0021527 GO:GO:0042659
GO:GO:0003281 GO:GO:0021514 GeneTree:ENSGT00700000104177
HOGENOM:HOG000232175 HOVERGEN:HBG054231 eggNOG:NOG314117
OrthoDB:EOG4XKV82 OMA:ALSWKRC EMBL:BC104582 IPI:IPI00705980
RefSeq:NP_001029923.1 UniGene:Bt.3730 ProteinModelPortal:Q3SWZ8
SMR:Q3SWZ8 PRIDE:Q3SWZ8 Ensembl:ENSBTAT00000000389 GeneID:614212
KEGG:bta:614212 CTD:8543 InParanoid:Q3SWZ8 NextBio:20898998
GO:GO:0050865 Uniprot:Q3SWZ8
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|E2QSI3 [details] [associations]
symbol:LMO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050865 "regulation of cell activation"
evidence=IEA] [GO:0048538 "thymus development" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042659 "regulation of
cell fate specification" evidence=IEA] [GO:0031333 "negative
regulation of protein complex assembly" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003281 "ventricular septum
development" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0001158
GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 OMA:ALSWKRC CTD:8543 GO:GO:0050865
EMBL:AAEX03004843 EMBL:AAEX03004844 RefSeq:XP_003434840.1
RefSeq:XP_537086.1 RefSeq:XP_867313.1 SMR:E2QSI3
Ensembl:ENSCAFT00000036423 GeneID:479962 KEGG:cfa:479962
NextBio:20855066 Uniprot:E2QSI3
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|P61968 [details] [associations]
symbol:LMO4 "LIM domain transcription factor LMO4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0042659 "regulation of cell fate specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048538 "thymus
development" evidence=IEA] [GO:0050865 "regulation of cell
activation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0001843 "neural tube closure" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0031333 GO:GO:0008270
GO:GO:0045944 Pathway_Interaction_DB:il6_7pathway GO:GO:0003700
EMBL:CH471097 GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0006366 GO:GO:0001843 GO:GO:0048538 GO:GO:0008134
GO:GO:0001158 GO:GO:0021527 GO:GO:0042659 GO:GO:0003281 PDB:2L4Z
PDBsum:2L4Z GO:GO:0021514 HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 EMBL:U24576 EMBL:BC003600 EMBL:BC017673 EMBL:BC065818
IPI:IPI00297604 RefSeq:NP_006760.1 UniGene:Hs.436792
ProteinModelPortal:P61968 SMR:P61968 IntAct:P61968 MINT:MINT-265427
STRING:P61968 DMDM:48428992 PRIDE:P61968 Ensembl:ENST00000370542
Ensembl:ENST00000370544 GeneID:8543 KEGG:hsa:8543 UCSC:uc001dmi.3
GeneCards:GC01P087794 HGNC:HGNC:6644 HPA:CAB022345 MIM:603129
neXtProt:NX_P61968 PharmGKB:PA30410 InParanoid:P61968
PhylomeDB:P61968 ChiTaRS:LMO4 EvolutionaryTrace:P61968
GenomeRNAi:8543 NextBio:32002 Bgee:P61968 CleanEx:HS_LMO4
Genevestigator:P61968 GermOnline:ENSG00000143013 Uniprot:P61968
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|A9ED91 [details] [associations]
symbol:LMO4 "LIM domain only 4" species:9823 "Sus scrofa"
[GO:0050865 "regulation of cell activation" evidence=IEA]
[GO:0048538 "thymus development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0042659 "regulation of cell fate
specification" evidence=IEA] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IEA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEA]
[GO:0021514 "ventral spinal cord interneuron differentiation"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003281 "ventricular septum development"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC
CTD:8543 GO:GO:0050865 EMBL:CU550656 EMBL:AB304401
RefSeq:NP_001106156.1 UniGene:Ssc.9714 ProteinModelPortal:A9ED91
SMR:A9ED91 STRING:A9ED91 PRIDE:A9ED91 Ensembl:ENSSSCT00000007590
GeneID:100127155 KEGG:ssc:100127155 Uniprot:A9ED91
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|Q6DJ06 [details] [associations]
symbol:lmo4.2 "LIM domain transcription factor LMO4.2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0007498 "mesoderm
development" evidence=ISS] [GO:0045665 "negative regulation of
neuron differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007498 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0045665 GO:GO:0006351
Gene3D:2.10.110.10 GO:GO:0003712 GO:GO:0007369
GeneTree:ENSGT00700000104177 HSSP:P61969 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 EMBL:CR760333 EMBL:BC075379
RefSeq:NP_001004922.1 UniGene:Str.145 ProteinModelPortal:Q6DJ06
SMR:Q6DJ06 Ensembl:ENSXETT00000053847 GeneID:448304 KEGG:xtr:448304
CTD:447751 Xenbase:XB-GENE-971939 InParanoid:Q6DJ06 OMA:ALSWKRC
Bgee:Q6DJ06 Uniprot:Q6DJ06
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>MGI|MGI:109360 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10090 "Mus musculus"
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IDA]
[GO:0001843 "neural tube closure" evidence=IMP] [GO:0003281
"ventricular septum development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IDA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IDA] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IGI] [GO:0031333
"negative regulation of protein complex assembly" evidence=IDA]
[GO:0042659 "regulation of cell fate specification" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048538 "thymus development"
evidence=IGI] [GO:0050865 "regulation of cell activation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:109360 GO:GO:0046872
GO:GO:0031333 GO:GO:0008270 GO:GO:0045944 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366 GO:GO:0001843
GO:GO:0048538 GO:GO:0008134 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 GO:GO:0003281 GO:GO:0021514 PDB:1M3V PDB:1RUT
PDBsum:1M3V PDBsum:1RUT HOGENOM:HOG000232175 HOVERGEN:HBG054231
eggNOG:NOG314117 OrthoDB:EOG4XKV82 OMA:ALSWKRC CTD:8543
GO:GO:0050865 ChiTaRS:LMO4 EMBL:AF074600 EMBL:AF102817
EMBL:AF096996 EMBL:BC003488 EMBL:BC004661 EMBL:BC010278
IPI:IPI00281974 RefSeq:NP_001155241.1 RefSeq:NP_001155242.1
RefSeq:NP_034853.1 UniGene:Mm.29187 PDB:2DFY PDBsum:2DFY
ProteinModelPortal:P61969 SMR:P61969 STRING:P61969 PRIDE:P61969
Ensembl:ENSMUST00000120539 Ensembl:ENSMUST00000121112
Ensembl:ENSMUST00000121796 GeneID:16911 KEGG:mmu:16911
InParanoid:P61969 EvolutionaryTrace:P61969 NextBio:290952
Bgee:P61969 CleanEx:MM_LMO4 Genevestigator:P61969 Uniprot:P61969
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>RGD|1305670 [details] [associations]
symbol:Lmo4 "LIM domain only 4" species:10116 "Rattus
norvegicus" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0001843 "neural tube closure"
evidence=IEA;ISO] [GO:0003281 "ventricular septum development"
evidence=IEA;ISO] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0008134 "transcription factor
binding" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021514 "ventral spinal cord interneuron
differentiation" evidence=IEA;ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA;ISO] [GO:0021527 "spinal cord
association neuron differentiation" evidence=IEA;ISO] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0042659 "regulation of cell fate specification"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048538
"thymus development" evidence=IEA;ISO] [GO:0050865 "regulation of
cell activation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:1305670
GO:GO:0046872 GO:GO:0031333 GO:GO:0008270 GO:GO:0045944
GO:GO:0005667 Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0006366
GO:GO:0001843 GO:GO:0048538 GO:GO:0001158 GO:GO:0021527
GO:GO:0042659 EMBL:CH473952 GO:GO:0003281 GO:GO:0021514
GeneTree:ENSGT00700000104177 HOGENOM:HOG000232175
HOVERGEN:HBG054231 eggNOG:NOG314117 OrthoDB:EOG4XKV82 CTD:8543
GO:GO:0050865 EMBL:BC087700 IPI:IPI00202852 RefSeq:NP_001009708.1
UniGene:Rn.2517 SMR:Q5PPG8 STRING:Q5PPG8 Ensembl:ENSRNOT00000067502
GeneID:362051 KEGG:rno:362051 UCSC:RGD:1305670 InParanoid:Q5PPG8
NextBio:678516 Genevestigator:Q5PPG8 Uniprot:Q5PPG8
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>ZFIN|ZDB-GENE-030131-3570 [details] [associations]
symbol:lmo4b "LIM domain only 4b" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-030131-3570 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 HSSP:P70662 HOVERGEN:HBG054231 EMBL:AF398515
IPI:IPI00497185 RefSeq:NP_997854.1 UniGene:Dr.78922
ProteinModelPortal:Q8JFQ1 SMR:Q8JFQ1 STRING:Q8JFQ1 GeneID:324849
KEGG:dre:324849 CTD:324849 InParanoid:Q8JFQ1 NextBio:20808994
ArrayExpress:Q8JFQ1 Uniprot:Q8JFQ1
Length = 165
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C+ CG + E+VMRAQ +VYHL CF C C L G++F
Sbjct: 71 ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 130
Query: 66 RSGQLFCRQD 75
+G LFC D
Sbjct: 131 INGSLFCEHD 140
>UNIPROTKB|F1RKD0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
GO:GO:0021937 OMA:SHQGQEM EMBL:CU468670 Ensembl:ENSSSCT00000010817
Uniprot:F1RKD0
Length = 401
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 44 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 103
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 104 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 139
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 166 PCRK 169
R+
Sbjct: 244 GARR 247
>UNIPROTKB|E1BQX0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0021766 "hippocampus development" evidence=IEA]
[GO:0021846 "cell proliferation in forebrain" evidence=IEA]
[GO:0021879 "forebrain neuron differentiation" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 GO:GO:0021937
OMA:SHQGQEM EMBL:AADN02050410 EMBL:AADN02050411 EMBL:AADN02050412
EMBL:AADN02050413 EMBL:AADN02050414 IPI:IPI00574747
Ensembl:ENSGALT00000013517 NextBio:20921461 Uniprot:E1BQX0
Length = 402
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 10 CHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSG 68
C FR +G KCA C + P ++V +A++ V+HL CF C++C + L GE+ +I+
Sbjct: 52 CKKNFFRRFGTKCAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDEN 111
Query: 69 QLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+ C++D+ L + S S D +
Sbjct: 112 KFVCKEDYLNSPSLKEGSLNSVSSCTDRS 140
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|A6QQY6 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 CTD:64211 OMA:SHQGQEM
EMBL:DAAA02045421 EMBL:BC150043 IPI:IPI00867450
RefSeq:NP_001095531.1 UniGene:Bt.88188 Ensembl:ENSBTAT00000004042
GeneID:520759 KEGG:bta:520759 InParanoid:A6QQY6 NextBio:20873176
Uniprot:A6QQY6
Length = 402
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 140
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|E2RRP3 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177 KO:K09372
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AAEX03014690
RefSeq:XP_543409.3 ProteinModelPortal:E2RRP3
Ensembl:ENSCAFT00000014514 GeneID:486283 KEGG:cfa:486283
NextBio:20860085 Uniprot:E2RRP3
Length = 402
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 140
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>MGI|MGI:107792 [details] [associations]
symbol:Lhx5 "LIM homeobox protein 5" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007267 "cell-cell signaling" evidence=IGI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IGI] [GO:0021549 "cerebellum
development" evidence=IGI] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IGI] [GO:0021766 "hippocampus
development" evidence=IMP] [GO:0021846 "cell proliferation in
forebrain" evidence=IMP] [GO:0021879 "forebrain neuron
differentiation" evidence=IMP] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IGI]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:107792 GO:GO:0005634 GO:GO:0021766
GO:GO:0045893 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527
GO:GO:0021702 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:U61155 EMBL:BC057585 IPI:IPI00118119
RefSeq:NP_032525.1 UniGene:Mm.5151 ProteinModelPortal:P61375
SMR:P61375 STRING:P61375 PhosphoSite:P61375 PRIDE:P61375
Ensembl:ENSMUST00000031591 GeneID:16873 KEGG:mmu:16873
InParanoid:P61375 NextBio:290846 Bgee:P61375 CleanEx:MM_LHX5
Genevestigator:P61375 GermOnline:ENSMUSG00000029595 Uniprot:P61375
Length = 402
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 140
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>RGD|71079 [details] [associations]
symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0007267
"cell-cell signaling" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA;ISO] [GO:0021549 "cerebellum
development" evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0021766 "hippocampus
development" evidence=IEA;ISO] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA;ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA;ISO] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:L35572 IPI:IPI00198471 PIR:I61573
RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376
SMR:P61376 STRING:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451
KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 NextBio:620463
Genevestigator:P61376 GermOnline:ENSRNOG00000001392 Uniprot:P61376
Length = 402
Score = 153 (58.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A+S V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+++ + C+ D+ L + S S D +
Sbjct: 105 LYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS 140
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>ZFIN|ZDB-GENE-980526-484 [details] [associations]
symbol:lhx5 "LIM homeobox 5" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F EMBL:L42547
EMBL:BC098523 IPI:IPI00509409 RefSeq:NP_571293.1 UniGene:Dr.75068
ProteinModelPortal:P52889 SMR:P52889 STRING:P52889
Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211
InParanoid:P52889 OMA:SHQGQEM NextBio:20806859 Bgee:P52889
Uniprot:P52889
Length = 399
Score = 153 (58.9 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + + C FR +G KCA C + P ++V RA+S V+HL CF C++C + L GE+
Sbjct: 45 SRDGKLYCKIDFFRRFGTKCAGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFE-----KEMYLMQQSSPSD 90
+++ + C++D+ KE+ L SS +D
Sbjct: 105 LYVIDENKFVCKEDYLSASAIKEVNLNSVSSCTD 138
Score = 46 (21.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|H0YM35 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000988
"protein binding transcription factor activity" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA]
[GO:0007498 "mesoderm development" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0007411 GO:GO:0007498 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 Gene3D:2.10.110.10
GO:GO:0001843 GO:GO:0009953 GO:GO:0021978 GO:GO:0000988
EMBL:AC006450 GO:GO:2000678 HGNC:HGNC:6594 ChiTaRS:LHX2
EMBL:AL158052 Ensembl:ENST00000560961 Bgee:H0YM35 Uniprot:H0YM35
Length = 147
Score = 145 (56.1 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 54 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 113
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 114 HFGMKDSLVYCRLHFEA---LLQGEYPA 138
>UNIPROTKB|E2QZZ9 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 EMBL:AAEX03006760 EMBL:AAEX03006761
Ensembl:ENSCAFT00000031319 Uniprot:E2QZZ9
Length = 397
Score = 162 (62.1 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 76 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 136 FYLMEDSRLVCKADYE 151
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 162 (62.1 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 71 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 130
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 131 FYLMEDSRLVCKADYE 146
>ZFIN|ZDB-GENE-980526-131 [details] [associations]
symbol:lhx3 "LIM homeobox 3" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-980526-131 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG275246 KO:K09374 HOVERGEN:HBG006263 CTD:8022 EMBL:U34590
IPI:IPI00486105 RefSeq:NP_571283.1 UniGene:Dr.570
ProteinModelPortal:Q90421 SMR:Q90421 STRING:Q90421 GeneID:30455
KEGG:dre:30455 NextBio:20806850 Uniprot:Q90421
Length = 398
Score = 162 (62.1 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF C++C + L G++
Sbjct: 68 SRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDE 127
Query: 63 F-ILRSGQLFCRQDFE 77
+ ++ +L C+ D+E
Sbjct: 128 YYLMEDSRLVCKADYE 143
>MGI|MGI:102673 [details] [associations]
symbol:Lhx3 "LIM homeobox protein 3" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001890
"placenta development" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IGI] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IDA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IGI] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IDA] [GO:0021983
"pituitary gland development" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:102673 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890 GO:GO:0021983
GO:GO:0048839 GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 GO:GO:0021520 PDB:2RGT PDBsum:2RGT PDB:2JTN PDBsum:2JTN
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN OrthoDB:EOG4SBDZ0
GO:GO:0021526 EMBL:L33776 EMBL:L38857 EMBL:L38249 EMBL:L38248
IPI:IPI00118214 IPI:IPI00263557 PIR:I59360 RefSeq:NP_001034742.1
UniGene:Mm.386765 ProteinModelPortal:P50481 SMR:P50481
MINT:MINT-7009840 STRING:P50481 PhosphoSite:P50481 PRIDE:P50481
Ensembl:ENSMUST00000028302 Ensembl:ENSMUST00000054099 GeneID:16871
KEGG:mmu:16871 EvolutionaryTrace:P50481 NextBio:290838 Bgee:P50481
CleanEx:MM_LHX3 Genevestigator:P50481 GermOnline:ENSMUSG00000026934
Uniprot:P50481
Length = 400
Score = 162 (62.1 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 74 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 134 FYLMEDSRLVCKADYE 149
>UNIPROTKB|G3V8E3 [details] [associations]
symbol:Lhx3 "Protein Lhx3" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 RefSeq:XP_002726117.1 RefSeq:XP_002729190.1
UniGene:Rn.198623 PRIDE:G3V8E3 Ensembl:ENSRNOT00000025047
GeneID:170671 KEGG:rno:170671 NextBio:621169 Uniprot:G3V8E3
Length = 400
Score = 162 (62.1 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 74 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 133
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 134 FYLMEDSRLVCKADYE 149
>UNIPROTKB|G3V9E7 [details] [associations]
symbol:Lhx3 "RCG45383, isoform CRA_b" species:10116 "Rattus
norvegicus" [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048839 "inner ear development" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 OMA:PLCAGCN UniGene:Rn.198623 GeneID:170671
KEGG:rno:170671 NextBio:621169 RefSeq:XP_001059910.2
RefSeq:XP_001078243.2 Ensembl:ENSRNOT00000045587 Uniprot:G3V9E7
Length = 402
Score = 162 (62.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 76 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 136 FYLMEDSRLVCKADYE 151
>UNIPROTKB|Q2TEA4 [details] [associations]
symbol:Lhx3 "LIM homeodomain 3 protein b isoform"
species:9913 "Bos taurus" [GO:0048839 "inner ear development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0021521 "ventral spinal cord interneuron
specification" evidence=IEA] [GO:0021520 "spinal cord motor neuron
cell fate specification" evidence=IEA] [GO:0008045 "motor neuron
axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021983 GO:GO:0048839
GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021520
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN GO:GO:0021526
EMBL:DAAA02032311 EMBL:AY923832 EMBL:AY923833 IPI:IPI00687531
IPI:IPI01028343 RefSeq:NP_001033709.1 UniGene:Bt.45155
Ensembl:ENSBTAT00000055580 GeneID:539213 KEGG:bta:539213
NextBio:20877851 Uniprot:Q2TEA4
Length = 403
Score = 162 (62.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 76 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 136 FYLMEDSRLVCKADYE 151
>UNIPROTKB|L7N0D8 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 Ensembl:ENSCAFT00000020228 Uniprot:L7N0D8
Length = 403
Score = 162 (62.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S V C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 76 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 135
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 136 FYLMEDSRLVCKADYE 151
>UNIPROTKB|Q801P0 [details] [associations]
symbol:lmo4-b "LIM domain transcription factor LMO4-B"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=ISS]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:BC048020
RefSeq:NP_001079705.1 UniGene:Xl.15362 ProteinModelPortal:Q801P0
SMR:Q801P0 GeneID:379392 KEGG:xla:379392 CTD:379392
Xenbase:XB-GENE-6256064 Uniprot:Q801P0
Length = 171
Score = 143 (55.4 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 29/70 (41%), Positives = 36/70 (51%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C CG + EMVMRAQ VYHL CF C C L G++F
Sbjct: 72 ILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHY 131
Query: 66 RSGQLFCRQD 75
+G +FC D
Sbjct: 132 VNGTIFCEHD 141
>UNIPROTKB|Q8AW92 [details] [associations]
symbol:lmo4-a "LIM domain transcription factor LMO4-A"
species:8355 "Xenopus laevis" [GO:0003712 "transcription cofactor
activity" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007498 "mesoderm development" evidence=IMP]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0007498 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0045665 GO:GO:0006351 Gene3D:2.10.110.10 GO:GO:0003712
GO:GO:0007369 HSSP:P61969 HOVERGEN:HBG054231 EMBL:AJ511277
EMBL:BC108585 RefSeq:NP_001079179.1 UniGene:Xl.5131
ProteinModelPortal:Q8AW92 SMR:Q8AW92 GeneID:373776 KEGG:xla:373776
CTD:373776 Xenbase:XB-GENE-865262 Uniprot:Q8AW92
Length = 171
Score = 143 (55.4 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 29/70 (41%), Positives = 36/70 (51%)
Query: 8 VSCHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+ C RL+G C CG + EMVMRAQ VYHL CF C C L G++F
Sbjct: 72 ILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHY 131
Query: 66 RSGQLFCRQD 75
+G +FC D
Sbjct: 132 VNGTIFCEHD 141
>ZFIN|ZDB-GENE-081105-149 [details] [associations]
symbol:si:dkey-90l8.3 "si:dkey-90l8.3" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-081105-149 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 EMBL:CU984584
IPI:IPI00501922 Ensembl:ENSDART00000074551 Uniprot:F1QMD9
Length = 165
Score = 143 (55.4 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 16 RLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
RL+G C+ CG + EMVMRAQ +VYHL CF C C L G++F +G +FC
Sbjct: 81 RLFGHTGACSACGQSIPASEMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFCE 140
Query: 74 QD 75
D
Sbjct: 141 HD 142
>UNIPROTKB|H0YMA3 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IEA] [GO:0021877
"forebrain neuron fate commitment" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877
GO:GO:0021853 GO:GO:0021800 GO:GO:0048469 GO:GO:0021799
EMBL:AL162424 HGNC:HGNC:21735 Ensembl:ENST00000558672 Bgee:H0YMA3
Uniprot:H0YMA3
Length = 73
Score = 142 (55.0 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 15 FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F L ++ CR
Sbjct: 4 FSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRI 63
Query: 75 DFE 77
++
Sbjct: 64 HYD 66
>UNIPROTKB|P37137 [details] [associations]
symbol:lhx5 "LIM/homeobox protein Lhx5" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 KO:K09372 CTD:64211 EMBL:L42546 EMBL:BC084744
EMBL:Z11587 PIR:S23803 RefSeq:NP_001084038.1 UniGene:Xl.1047
ProteinModelPortal:P37137 SMR:P37137 GeneID:399270 KEGG:xla:399270
Xenbase:XB-GENE-865965 Uniprot:P37137
Length = 402
Score = 151 (58.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C FR +G KCA C + P ++V +A++ V+HL CF C++C + L GE+
Sbjct: 45 SREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEE 104
Query: 63 -FILRSGQLFCRQDFEKEMYLMQQSSPSDDMMLDEN 97
+I+ + C++D+ L + S S D +
Sbjct: 105 LYIIDENKFVCKEDYISASSLKESSLNSVSSCTDRS 140
Score = 45 (20.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 185 TTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 166 PCRK 169
R+
Sbjct: 245 GARR 248
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 159 (61.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + C F+ +G KCA C + P ++V RAQ VYHL CF CV+C + L G++
Sbjct: 56 SRGESLYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 115
Query: 63 F-ILRSGQLFCRQDFE 77
F ++ +L C+ D+E
Sbjct: 116 FYLMEDSRLVCKADYE 131
>UNIPROTKB|E1BM60 [details] [associations]
symbol:ISL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA] [GO:0031290
"retinal ganglion cell axon guidance" evidence=IEA] [GO:0021524
"visceral motor neuron differentiation" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
GO:GO:0031290 GO:GO:0021520 GO:GO:0021524 OMA:RHDSAVQ
EMBL:DAAA02052446 IPI:IPI00701951 UniGene:Bt.34422
Ensembl:ENSBTAT00000022147 NextBio:20928153 Uniprot:E1BM60
Length = 359
Score = 158 (60.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
>UNIPROTKB|Q96A47 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0021520 "spinal cord motor neuron cell
fate specification" evidence=IEA] [GO:0021524 "visceral motor
neuron differentiation" evidence=IEA] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA] [GO:0045665 "negative regulation
of neuron differentiation" evidence=IEA] [GO:0048935 "peripheral
nervous system neuron development" evidence=TAS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0048666 "neuron development" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:CH471136 GO:GO:0031290
GO:GO:0048935 eggNOG:COG5576 GO:GO:0021520 HOVERGEN:HBG004671
KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR GO:GO:0021524
OMA:RHDSAVQ EMBL:AK001022 EMBL:BC011967 EMBL:BC012136
IPI:IPI00059240 RefSeq:NP_665804.1 UniGene:Hs.444677
ProteinModelPortal:Q96A47 SMR:Q96A47 STRING:Q96A47
PhosphoSite:Q96A47 DMDM:20978495 PRIDE:Q96A47 DNASU:64843
Ensembl:ENST00000290759 GeneID:64843 KEGG:hsa:64843 UCSC:uc002bbw.1
CTD:64843 GeneCards:GC15P076629 HGNC:HGNC:18524 MIM:609481
neXtProt:NX_Q96A47 PharmGKB:PA38566 InParanoid:Q96A47
PhylomeDB:Q96A47 GenomeRNAi:64843 NextBio:66950 Bgee:Q96A47
CleanEx:HS_ISL2 Genevestigator:Q96A47 GermOnline:ENSG00000159556
Uniprot:Q96A47
Length = 359
Score = 158 (60.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
>MGI|MGI:109156 [details] [associations]
symbol:Isl2 "insulin related protein 2 (islet 2)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021524 "visceral motor neuron differentiation"
evidence=IGI;IMP] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment"
evidence=IGI;IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 MGI:MGI:109156
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 EMBL:CH466522 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 OMA:RHDSAVQ CTD:64843 EMBL:AK013964
EMBL:AC116699 IPI:IPI00110854 RefSeq:NP_081673.2 UniGene:Mm.273996
PDB:3MMK PDBsum:3MMK ProteinModelPortal:Q9CXV0 STRING:Q9CXV0
PhosphoSite:Q9CXV0 PRIDE:Q9CXV0 DNASU:104360
Ensembl:ENSMUST00000034869 GeneID:104360 KEGG:mmu:104360
UCSC:uc009psm.1 InParanoid:Q9CXV0 NextBio:356992 CleanEx:MM_ISL2
Genevestigator:Q9CXV0 GermOnline:ENSMUSG00000032318 Uniprot:Q9CXV0
Length = 359
Score = 157 (60.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
>RGD|621849 [details] [associations]
symbol:Isl2 "ISL LIM homeobox 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA;ISO] [GO:0048663
"neuron fate commitment" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576 GO:GO:0021520
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR
GO:GO:0021524 CTD:64843 EMBL:L35571 IPI:IPI00198543 PIR:A55198
RefSeq:NP_065204.1 UniGene:Rn.10026 PDB:1BW5 PDBsum:1BW5
ProteinModelPortal:P50480 SMR:P50480 STRING:P50480 PRIDE:P50480
GeneID:57233 KEGG:rno:57233 UCSC:RGD:621849 InParanoid:P50480
EvolutionaryTrace:P50480 NextBio:611298 ArrayExpress:P50480
Genevestigator:P50480 GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 157 (60.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
>UNIPROTKB|P50480 [details] [associations]
symbol:Isl2 "Insulin gene enhancer protein ISL-2"
species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 CTD:64843 EMBL:L35571
IPI:IPI00198543 PIR:A55198 RefSeq:NP_065204.1 UniGene:Rn.10026
PDB:1BW5 PDBsum:1BW5 ProteinModelPortal:P50480 SMR:P50480
STRING:P50480 PRIDE:P50480 GeneID:57233 KEGG:rno:57233
UCSC:RGD:621849 InParanoid:P50480 EvolutionaryTrace:P50480
NextBio:611298 ArrayExpress:P50480 Genevestigator:P50480
GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 157 (60.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F LR +L CR D
Sbjct: 83 RLFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
>UNIPROTKB|Q6PVU4 [details] [associations]
symbol:Q6PVU4 "Lim1" species:9986 "Oryctolagus cuniculus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702 HSSP:P10037
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY575212 UniGene:Ocu.3134
ProteinModelPortal:Q6PVU4 Uniprot:Q6PVU4
Length = 348
Score = 145 (56.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ-FILRSGQLFCRQDF 76
+G KCA C + P ++V RA+S V+HL CF C++C + L GE+ +I+ + C++D+
Sbjct: 1 FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60
Query: 77 EKEMYLMQQSS 87
+ +++S
Sbjct: 61 LSNSSVAKENS 71
Score = 47 (21.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFKSSFEISSM 165
T + + Q K++F +PKP R + T + R + N+R + + ++S++
Sbjct: 127 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 186
Query: 166 PCRK 169
R+
Sbjct: 187 GARR 190
>FB|FBgn0003896 [details] [associations]
symbol:tup "tailup" species:7227 "Drosophila melanogaster"
[GO:0008293 "torso signaling pathway" evidence=IGI] [GO:0007362
"terminal region determination" evidence=IGI] [GO:0007390
"germ-band shortening" evidence=IMP] [GO:0008258 "head involution"
evidence=NAS] [GO:0046665 "amnioserosa maintenance" evidence=IMP]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IMP] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0007391 "dorsal
closure" evidence=IMP] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0070983 "dendrite
guidance" evidence=IMP] [GO:0035310 "notum cell fate specification"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0007507 "heart
development" evidence=IMP] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IDA] [GO:0048542
"lymph gland development" evidence=IMP] [GO:0003705 "RNA polymerase
II distal enhancer sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0022416 "chaeta development"
evidence=IMP] [GO:0007521 "muscle cell fate determination"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007507 GO:GO:0046872
GO:GO:0007391 GO:GO:0008293 GO:GO:0008270 GO:GO:0045944
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003705 GO:GO:0000980
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0043433 GO:GO:0048542
GO:GO:0035310 GO:GO:0008407 eggNOG:NOG264882 GO:GO:0007362
GO:GO:0070983 GO:GO:0008258 GO:GO:0007390 GO:GO:0007521 HSSP:P50480
GO:GO:0046665 EMBL:U89385 ProteinModelPortal:P92031 SMR:P92031
STRING:P92031 PRIDE:P92031 FlyBase:FBgn0003896 InParanoid:P92031
OrthoDB:EOG45DV52 ArrayExpress:P92031 Bgee:P92031 Uniprot:P92031
Length = 534
Score = 159 (61.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR-SGQLFCRQ 74
RL+G KC +CG+ ++ VMRA++ ++H+ CF C C + L G++F LR +G L+C++
Sbjct: 110 RLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKE 169
Query: 75 DFEKEMYLMQQSSPS 89
D + ++++SS S
Sbjct: 170 DHD----VLEKSSQS 180
>ZFIN|ZDB-GENE-990415-133 [details] [associations]
symbol:isl2b "islet2b" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-990415-133 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOVERGEN:HBG004671
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38454 EMBL:AL845510
EMBL:BC095011 EMBL:U09404 IPI:IPI00485578 PIR:I51735
RefSeq:NP_571039.1 UniGene:Dr.20916 ProteinModelPortal:P53407
SMR:P53407 STRING:P53407 Ensembl:ENSDART00000055936 GeneID:30151
KEGG:dre:30151 CTD:30151 InParanoid:P53407 OMA:HAHKQAE
NextBio:20806624 Bgee:P53407 Uniprot:P53407
Length = 358
Score = 154 (59.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
RL+G+KCA+C ++VMRA+ VYH+ CF C +C + L G++F +R +L CR D
Sbjct: 83 RLFGIKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRAD 142
>MGI|MGI:1096343 [details] [associations]
symbol:Lhx8 "LIM homeobox protein 8" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IMP] [GO:0021879 "forebrain neuron differentiation"
evidence=IMP] [GO:0021884 "forebrain neuron development"
evidence=IGI] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1096343 GO:GO:0005634 GO:GO:0008585
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 EMBL:CH466532 GO:GO:0021884
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 CTD:431707 OMA:MYWKSDQ
OrthoDB:EOG48WC27 EMBL:D49658 EMBL:AB007596 EMBL:AJ000338
EMBL:AK165733 EMBL:BC125281 EMBL:BC125283 EMBL:BC144768
IPI:IPI00132791 RefSeq:NP_034843.2 UniGene:Mm.15530
ProteinModelPortal:O35652 SMR:O35652 STRING:O35652
PhosphoSite:O35652 PRIDE:O35652 Ensembl:ENSMUST00000177846
GeneID:16875 KEGG:mmu:16875 InParanoid:Q3TMT2 NextBio:290860
Bgee:O35652 CleanEx:MM_LHX8 Genevestigator:O35652
GermOnline:ENSMUSG00000028201 Uniprot:O35652
Length = 367
Score = 154 (59.3 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 143 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 202
Query: 68 GQLFCRQDFE 77
++ CR F+
Sbjct: 203 EKVLCRVHFD 212
>UNIPROTKB|G3V6V6 [details] [associations]
symbol:Lhx8 "RCG29002" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:1308749 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CH473952
OMA:MYWKSDQ Ensembl:ENSRNOT00000009370 Uniprot:G3V6V6
Length = 367
Score = 154 (59.3 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 143 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 202
Query: 68 GQLFCRQDFE 77
++ CR F+
Sbjct: 203 EKVLCRVHFD 212
>UNIPROTKB|J9PBA6 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03004901 EMBL:AAEX03004902
Ensembl:ENSCAFT00000043981 Uniprot:J9PBA6
Length = 295
Score = 151 (58.2 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 61 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 120
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 121 EKVLCRVHYD 130
>UNIPROTKB|C8YLT4 [details] [associations]
symbol:Lhx8 "LIM homeobox 8" species:9823 "Sus scrofa"
[GO:0005634 "nucleus" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0021884 "forebrain
neuron development" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0007611 "learning or memory"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 KO:K09375 CTD:431707 OMA:MYWKSDQ
EMBL:CU929623 EMBL:FJ587986 RefSeq:NP_001159787.1 UniGene:Ssc.78542
Ensembl:ENSSSCT00000004181 GeneID:100310798 KEGG:ssc:100310798
Uniprot:C8YLT4
Length = 295
Score = 151 (58.2 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 61 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 120
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 121 EKVLCRVHYD 130
>UNIPROTKB|E1BSF2 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AADN02033814 EMBL:AADN02033815 IPI:IPI00685016
Ensembl:ENSGALT00000034098 ArrayExpress:E1BSF2 Uniprot:E1BSF2
Length = 330
Score = 147 (56.8 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFEKEMYLMQQSSP 88
++CR FE L+Q P
Sbjct: 178 DNLVYCRAHFES---LLQGEYP 196
Score = 38 (18.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|Q68EY3 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8355
"Xenopus laevis" [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
KO:K09373 HOVERGEN:HBG006262 HSSP:P61969 EMBL:BC080067
RefSeq:NP_001087527.1 UniGene:Xl.28959 ProteinModelPortal:Q68EY3
SMR:Q68EY3 GeneID:447351 KEGG:xla:447351 CTD:447351
Xenbase:XB-GENE-866119 Uniprot:Q68EY3
Length = 331
Score = 147 (56.8 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C +R +CARC + EMVMRA+ VYHL CF C C + L G+QF ++
Sbjct: 120 IYCKEDYYRFSVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKE 179
Query: 68 GQLFCRQDFE 77
++CR FE
Sbjct: 180 NLVYCRIHFE 189
Score = 38 (18.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 265 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 296
>ZFIN|ZDB-GENE-041025-1 [details] [associations]
symbol:lhx6 "LIM homeobox 6" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-041025-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 CTD:26468 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
EMBL:BX571668 EMBL:BC162225 EMBL:AY664403 IPI:IPI00495496
RefSeq:NP_001004015.1 UniGene:Dr.33994 STRING:Q6BDC4
Ensembl:ENSDART00000021100 GeneID:445565 KEGG:dre:445565
InParanoid:Q6BDC4 NextBio:20832189 Uniprot:Q6BDC4
Length = 375
Score = 152 (58.6 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 141 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 200
Query: 65 LRSGQLFCRQDFEKEMYLMQQSSPS 89
L ++ CR ++ + +++++ S
Sbjct: 201 LVEEKVLCRIHYDTMVENLKRAAES 225
>UNIPROTKB|Q90XH3 [details] [associations]
symbol:lmo2 "Rhombotin-2" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0030218 "erythrocyte
differentiation" evidence=IGI] [GO:0003677 "DNA binding"
evidence=ISS] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0030218 HSSP:P25801
HOVERGEN:HBG054231 CTD:4005 KO:K15612 EMBL:AF374473 EMBL:BC097502
RefSeq:NP_001081112.1 UniGene:Xl.9549 ProteinModelPortal:Q90XH3
SMR:Q90XH3 GeneID:394388 KEGG:xla:394388 Xenbase:XB-GENE-6254426
Uniprot:Q90XH3
Length = 158
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C +R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>UNIPROTKB|E9PGE3 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 KO:K09375
EMBL:AC099786 RefSeq:NP_001243043.1 UniGene:Hs.403934 GeneID:431707
KEGG:hsa:431707 CTD:431707 HGNC:HGNC:28838 GenomeRNAi:431707
IPI:IPI00480117 ProteinModelPortal:E9PGE3 SMR:E9PGE3
Ensembl:ENST00000356261 ArrayExpress:E9PGE3 Bgee:E9PGE3
Uniprot:E9PGE3
Length = 346
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 112 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 171
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 172 EKVLCRVHYD 181
>UNIPROTKB|F1P4G9 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AADN02012385
IPI:IPI00572692 Ensembl:ENSGALT00000018546 Uniprot:F1P4G9
Length = 347
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 113 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 172
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 173 EKVLCRVHYD 182
>UNIPROTKB|Q68G74 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
eggNOG:NOG264882 HSSP:P06601 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 EMBL:AC099786 EMBL:BC040321
IPI:IPI00470355 RefSeq:NP_001001933.1 RefSeq:NP_001243043.1
UniGene:Hs.403934 ProteinModelPortal:Q68G74 SMR:Q68G74
STRING:Q68G74 PhosphoSite:Q68G74 DMDM:296434566 PRIDE:Q68G74
DNASU:431707 Ensembl:ENST00000294638 GeneID:431707 KEGG:hsa:431707
UCSC:uc001dgo.3 CTD:431707 GeneCards:GC01P075594 HGNC:HGNC:28838
MIM:604425 neXtProt:NX_Q68G74 PharmGKB:PA142671553
InParanoid:Q68G74 OMA:MYWKSDQ OrthoDB:EOG48WC27 GenomeRNAi:431707
NextBio:108706 ArrayExpress:Q68G74 Bgee:Q68G74 CleanEx:HS_LHX8
Genevestigator:Q68G74 Uniprot:Q68G74
Length = 356
Score = 151 (58.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 122 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 181
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 182 EKVLCRVHYD 191
>UNIPROTKB|E1BBB7 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:DAAA02008298
IPI:IPI00713787 Ensembl:ENSBTAT00000025544 Uniprot:E1BBB7
Length = 371
Score = 151 (58.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 143 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 202
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 203 EKVLCRVHYD 212
>ZFIN|ZDB-GENE-031008-2 [details] [associations]
symbol:lhx8a "LIM homeobox 8a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-031008-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006261 KO:K09375 EMBL:BC117601 EMBL:AY664404
IPI:IPI00487481 RefSeq:NP_001003980.1 UniGene:Dr.82056
STRING:Q6BDC3 GeneID:378959 KEGG:dre:378959 CTD:378959
InParanoid:Q6BDC3 NextBio:20813902 Uniprot:Q6BDC3
Length = 332
Score = 150 (57.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 2 TSHNSHVSCHPRG---------FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVI 52
TS H+SC+ + FR YG +CA CG + ++ V RA+ + YHL CF C
Sbjct: 83 TSLGRHISCYIKEKEIFCKLDYFRKYGTRCAHCGRNIHSNDWVRRAKGNTYHLACFACFS 142
Query: 53 CCQPLQKGEQFILRSGQLFCRQDFE 77
C + L GE+F L ++ CR ++
Sbjct: 143 CKRQLSTGEEFALVDERVLCRVHYD 167
>UNIPROTKB|E2REU0 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AAEX03004901
EMBL:AAEX03004902 Ensembl:ENSCAFT00000032488 Uniprot:E2REU0
Length = 379
Score = 151 (58.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR YG +C+RCG + + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 145 IFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 204
Query: 68 GQLFCRQDFE 77
++ CR ++
Sbjct: 205 EKVLCRVHYD 214
>UNIPROTKB|E1BM14 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 EMBL:DAAA02032103
IPI:IPI00694370 RefSeq:NP_001178104.1 UniGene:Bt.107855
PRIDE:E1BM14 Ensembl:ENSBTAT00000014582 GeneID:783763
KEGG:bta:783763 NextBio:20926288 Uniprot:E1BM14
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|E2RPC3 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355 OMA:CNENDAE
EMBL:AAEX03006892 RefSeq:XP_863668.2 Ensembl:ENSCAFT00000032214
GeneID:491340 KEGG:cfa:491340 Uniprot:E2RPC3
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|P50458 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0009953 "dorsal/ventral
pattern formation" evidence=IEA] [GO:0021978 "telencephalon
regionalization" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
KO:K09373 GO:GO:0021978 GO:GO:0000988 eggNOG:COG5576 GO:GO:2000678
EMBL:U11701 EMBL:BC093662 EMBL:BC112185 EMBL:AK094511 EMBL:AF124735
IPI:IPI00032144 RefSeq:NP_004780.3 UniGene:Hs.696425
ProteinModelPortal:P50458 SMR:P50458 STRING:P50458
PhosphoSite:P50458 DMDM:8247936 PaxDb:P50458 PRIDE:P50458
DNASU:9355 Ensembl:ENST00000373615 GeneID:9355 KEGG:hsa:9355
UCSC:uc004boe.1 CTD:9355 GeneCards:GC09P126763 HGNC:HGNC:6594
MIM:603759 neXtProt:NX_P50458 PharmGKB:PA30365 HOGENOM:HOG000034022
HOVERGEN:HBG006262 InParanoid:P50458 OrthoDB:EOG4G4GQK
PhylomeDB:P50458 ChiTaRS:LHX2 GenomeRNAi:9355 NextBio:35033
Bgee:P50458 CleanEx:HS_LHX2 Genevestigator:P50458
GermOnline:ENSG00000106689 Uniprot:P50458
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|C4TJC6 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 CTD:9355 OrthoDB:EOG4G4GQK OMA:CNENDAE EMBL:CU570921
EMBL:AB473486 RefSeq:NP_001163990.1 UniGene:Ssc.71156 STRING:C4TJC6
Ensembl:ENSSSCT00000006141 GeneID:100156063 KEGG:ssc:100156063
Uniprot:C4TJC6
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>MGI|MGI:96785 [details] [associations]
symbol:Lhx2 "LIM homeobox protein 2" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001843
"neural tube closure" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007420 "brain development" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0021978 "telencephalon regionalization"
evidence=IGI;IMP] [GO:0022008 "neurogenesis" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=IMP] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:96785 GO:GO:0005634 GO:GO:0007411
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0021978 GO:GO:0000988 GO:GO:2000678 CTD:9355
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
EMBL:AF124734 EMBL:BC055741 IPI:IPI00129385 RefSeq:NP_034840.1
UniGene:Mm.142856 ProteinModelPortal:Q9Z0S2 SMR:Q9Z0S2
STRING:Q9Z0S2 PhosphoSite:Q9Z0S2 PRIDE:Q9Z0S2
Ensembl:ENSMUST00000000253 GeneID:16870 KEGG:mmu:16870
InParanoid:Q9Z0S2 OMA:CNENDAE NextBio:290834 Bgee:Q9Z0S2
CleanEx:MM_LHX2 Genevestigator:Q9Z0S2 GermOnline:ENSMUSG00000000247
Uniprot:Q9Z0S2
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|D4A380 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670 KO:K09373 CTD:9355
OrthoDB:EOG4G4GQK UniGene:Rn.81063 EMBL:CH473983 IPI:IPI00950401
RefSeq:NP_001100041.1 SMR:D4A380 Ensembl:ENSRNOT00000064507
GeneID:296706 KEGG:rno:296706 NextBio:641689 Uniprot:D4A380
Length = 406
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|F1NV70 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0035262 "gonad morphogenesis" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:AAMLFHG IPI:IPI00682838
EMBL:AADN02033814 EMBL:AADN02033815 Ensembl:ENSGALT00000003480
ArrayExpress:F1NV70 Uniprot:F1NV70
Length = 378
Score = 147 (56.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 99 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMK 158
Query: 67 SGQLFCRQDFEKEMYLMQQSSP 88
++CR FE L+Q P
Sbjct: 159 DNLVYCRAHFES---LLQGEYP 177
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 245 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 276
>UNIPROTKB|J9P8Y1 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03006908 EMBL:AAEX03006909
Ensembl:ENSCAFT00000045524 Uniprot:J9P8Y1
Length = 353
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 203 LVEEKVLCRIHYD 215
>UNIPROTKB|F1SLQ9 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 GeneTree:ENSGT00700000104050 GO:GO:0048469
GO:GO:0021799 OMA:PATDQVM EMBL:CU041257 Ensembl:ENSSSCT00000006081
Uniprot:F1SLQ9
Length = 362
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 133 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 192
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 193 LVEEKVLCRIHYD 205
>UNIPROTKB|E2RA99 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:26468 KO:K09375 OMA:PATDQVM
EMBL:AAEX03006908 EMBL:AAEX03006909 RefSeq:XP_548475.3
Ensembl:ENSCAFT00000032295 GeneID:491354 KEGG:cfa:491354
Uniprot:E2RA99
Length = 363
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 174 LVEEKVLCRIHYD 186
>UNIPROTKB|Q9UPM6 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0021877 "forebrain
neuron fate commitment" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=ISS] [GO:0021800 "cerebral cortex
tangential migration" evidence=ISS] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=ISS] [GO:0048469 "cell
maturation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 EMBL:CH471090
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 eggNOG:NOG264882 GO:GO:0048469 GO:GO:0021799
EMBL:AB031041 EMBL:AB031042 EMBL:AK126982 EMBL:AK289827
EMBL:AK297175 EMBL:AK299709 EMBL:AK313808 EMBL:AL162424
EMBL:AL136570 EMBL:BC103936 EMBL:BC103937 IPI:IPI00294419
IPI:IPI00513787 IPI:IPI00852614 IPI:IPI00853518 PIR:T46907
RefSeq:NP_001229262.1 RefSeq:NP_001229263.1 RefSeq:NP_001229264.1
RefSeq:NP_055183.2 RefSeq:NP_954629.2 UniGene:Hs.103137
ProteinModelPortal:Q9UPM6 SMR:Q9UPM6 STRING:Q9UPM6 DMDM:90185239
PRIDE:Q9UPM6 DNASU:26468 Ensembl:ENST00000340587
Ensembl:ENST00000373754 Ensembl:ENST00000373755
Ensembl:ENST00000394319 Ensembl:ENST00000541397
Ensembl:ENST00000559895 GeneID:26468 KEGG:hsa:26468 UCSC:uc004blx.4
UCSC:uc004bly.4 UCSC:uc010mvw.3 CTD:26468 GeneCards:GC09M124964
HGNC:HGNC:21735 HPA:HPA047854 MIM:608215 neXtProt:NX_Q9UPM6
PharmGKB:PA134949308 HOGENOM:HOG000038965 HOVERGEN:HBG006261
InParanoid:Q9UPM6 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
PhylomeDB:Q9UPM6 GenomeRNAi:26468 NextBio:48705 ArrayExpress:Q9UPM6
Bgee:Q9UPM6 CleanEx:HS_LHX6 Genevestigator:Q9UPM6
GermOnline:ENSG00000106852 Uniprot:Q9UPM6
Length = 363
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 114 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 174 LVEEKVLCRIHYD 186
>MGI|MGI:1306803 [details] [associations]
symbol:Lhx6 "LIM homeobox protein 6" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IMP] [GO:0021800 "cerebral cortex
tangential migration" evidence=IMP] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IMP] [GO:0021877
"forebrain neuron fate commitment" evidence=IGI] [GO:0021884
"forebrain neuron development" evidence=IGI] [GO:0021895 "cerebral
cortex neuron differentiation" evidence=IGI] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1306803 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021884
GO:GO:0021877 GO:GO:0021853 GO:GO:0021800 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
HOGENOM:HOG000038965 HOVERGEN:HBG006261 KO:K09375 OrthoDB:EOG4GTKD8
EMBL:AJ000337 EMBL:AB031040 EMBL:AB031039 EMBL:AL773525
EMBL:BC065077 IPI:IPI00457813 IPI:IPI00457814 RefSeq:NP_001076595.1
RefSeq:NP_001076596.1 RefSeq:NP_032526.2 UniGene:Mm.12881
ProteinModelPortal:Q9R1R0 SMR:Q9R1R0 STRING:Q9R1R0 PRIDE:Q9R1R0
Ensembl:ENSMUST00000112961 Ensembl:ENSMUST00000112963
Ensembl:ENSMUST00000112966 Ensembl:ENSMUST00000148852 GeneID:16874
KEGG:mmu:16874 InParanoid:Q6P1H2 NextBio:290850 Bgee:Q9R1R0
Genevestigator:Q9R1R0 Uniprot:Q9R1R0
Length = 363
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 114 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 173
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 174 LVEEKVLCRIHYD 186
>UNIPROTKB|G3N0G6 [details] [associations]
symbol:LHX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0021978
"telencephalon regionalization" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0007498
"mesoderm development" evidence=IEA] [GO:0007411 "axon guidance"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
GeneTree:ENSGT00680000099670 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 OMA:CNENDAE EMBL:DAAA02032103
Ensembl:ENSBTAT00000065104 Uniprot:G3N0G6
Length = 427
Score = 145 (56.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 95 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 154
Query: 62 QFILRSGQLFCRQDFEKEMYLMQQSSPS 89
F ++ ++CR FE L+Q P+
Sbjct: 155 HFGMKDSLVYCRLHFEA---LLQGEYPA 179
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 294
>UNIPROTKB|F1NU72 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0001190 "RNA
polymerase II transcription factor binding transcription factor
activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0070888 "E-box binding" evidence=IEA] [GO:0097067 "cellular
response to thyroid hormone stimulus" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190
GeneTree:ENSGT00680000099670 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 OMA:CEKRIRA
EMBL:AADN02073657 IPI:IPI00575087 Ensembl:ENSGALT00000000471
ArrayExpress:F1NU72 Uniprot:F1NU72
Length = 144
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 66 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 125
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 126 SDIVCEQD 133
>UNIPROTKB|Q1LZ94 [details] [associations]
symbol:LMO2 "Rhombotin-2" species:9913 "Bos taurus"
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0045647 "negative regulation
of erythrocyte differentiation" evidence=IEA] [GO:0043425 "bHLH
transcription factor binding" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GeneTree:ENSGT00680000099670
GO:GO:0000977 GO:GO:0042789 GO:GO:0070888 GO:GO:0035162
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 HOGENOM:HOG000232175
HOVERGEN:HBG054231 EMBL:BC116134 IPI:IPI00688250
RefSeq:NP_001069820.1 UniGene:Bt.17081 ProteinModelPortal:Q1LZ94
SMR:Q1LZ94 STRING:Q1LZ94 PRIDE:Q1LZ94 Ensembl:ENSBTAT00000009126
GeneID:614876 KEGG:bta:614876 CTD:4005 eggNOG:NOG319108
InParanoid:Q1LZ94 KO:K15612 OMA:CEKRIRA OrthoDB:EOG4001KG
NextBio:20899332 Uniprot:Q1LZ94
Length = 158
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>UNIPROTKB|P25791 [details] [associations]
symbol:LMO2 "Rhombotin-2" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0035162 "embryonic hemopoiesis"
evidence=IEA] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IEA] [GO:0097067 "cellular response to
thyroid hormone stimulus" evidence=IDA] [GO:0007275 "multicellular
organismal development" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0070888 "E-box binding" evidence=IDA] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0043425 "bHLH transcription factor
binding" evidence=IPI] [GO:0048037 "cofactor binding" evidence=IPI]
[GO:0042789 "mRNA transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IDA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0007275 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0035162 GO:GO:0097067 GO:GO:0045647
GO:GO:0001228 PDB:2XJY PDB:2XJZ PDBsum:2XJY PDBsum:2XJZ
HOGENOM:HOG000232175 HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108
KO:K15612 OMA:CEKRIRA OrthoDB:EOG4001KG EMBL:X61118 EMBL:BC034041
EMBL:BC035607 EMBL:BC042426 EMBL:BC073973 EMBL:AF257211
IPI:IPI00016852 IPI:IPI00915342 IPI:IPI00926017 PIR:S29477
RefSeq:NP_001135787.1 RefSeq:NP_001135788.1 RefSeq:NP_005565.2
UniGene:Hs.34560 ProteinModelPortal:P25791 SMR:P25791 IntAct:P25791
MINT:MINT-233526 STRING:P25791 PhosphoSite:P25791 DMDM:132533
PRIDE:P25791 DNASU:4005 Ensembl:ENST00000257818
Ensembl:ENST00000395833 Ensembl:ENST00000411482 GeneID:4005
KEGG:hsa:4005 UCSC:uc001mvc.3 UCSC:uc010rem.2 GeneCards:GC11M033880
H-InvDB:HIX0009544 HGNC:HGNC:6642 HPA:CAB016258 MIM:180385
neXtProt:NX_P25791 PharmGKB:PA30408 InParanoid:P25791
PhylomeDB:P25791 ChiTaRS:LMO2 EvolutionaryTrace:P25791
GenomeRNAi:4005 NextBio:15712 Bgee:P25791 CleanEx:HS_LMO2
Genevestigator:P25791 GermOnline:ENSG00000135363 Uniprot:P25791
Length = 158
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>UNIPROTKB|F1SGS5 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0048037
"cofactor binding" evidence=IEA] [GO:0045647 "negative regulation
of erythrocyte differentiation" evidence=IEA] [GO:0043425 "bHLH
transcription factor binding" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0048037 GO:GO:0001190 GeneTree:ENSGT00680000099670
GO:GO:0000977 GO:GO:0042789 GO:GO:0070888 GO:GO:0035162
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 OMA:CEKRIRA EMBL:CU463884
ProteinModelPortal:F1SGS5 SMR:F1SGS5 Ensembl:ENSSSCT00000014533
Uniprot:F1SGS5
Length = 158
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>MGI|MGI:102811 [details] [associations]
symbol:Lmo2 "LIM domain only 2" species:10090 "Mus musculus"
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=ISO] [GO:0000981 "sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=ISO] [GO:0001190 "RNA
polymerase II transcription factor binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0035162 "embryonic hemopoiesis"
evidence=IGI] [GO:0042789 "mRNA transcription from RNA polymerase
II promoter" evidence=ISO] [GO:0043234 "protein complex"
evidence=IPI] [GO:0043425 "bHLH transcription factor binding"
evidence=ISO] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048037 "cofactor
binding" evidence=ISO] [GO:0070888 "E-box binding" evidence=ISO]
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=ISO] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:102811 GO:GO:0005634
GO:GO:0043234 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0003682 Gene3D:2.10.110.10 GO:GO:0035162 GO:GO:0045647
PDB:2L6Y PDB:2L6Z PDBsum:2L6Y PDBsum:2L6Z PDB:1J2O PDB:2LXD
PDBsum:1J2O PDBsum:2LXD HOGENOM:HOG000232175 HOVERGEN:HBG054231
CTD:4005 eggNOG:NOG319108 KO:K15612 OrthoDB:EOG4001KG ChiTaRS:LMO2
EMBL:M64360 EMBL:BC057880 IPI:IPI00114239 PIR:A39370
RefSeq:NP_001135808.1 RefSeq:NP_001135809.1 RefSeq:NP_032531.2
UniGene:Mm.29266 ProteinModelPortal:P25801 SMR:P25801
DIP:DIP-24247N IntAct:P25801 MINT:MINT-2567948 STRING:P25801
PhosphoSite:P25801 PRIDE:P25801 Ensembl:ENSMUST00000123437
Ensembl:ENSMUST00000163256 Ensembl:ENSMUST00000170926 GeneID:16909
KEGG:mmu:16909 InParanoid:P25801 EvolutionaryTrace:P25801
NextBio:290948 Bgee:P25801 CleanEx:MM_LMO2 Genevestigator:P25801
GermOnline:ENSMUSG00000032698 Uniprot:P25801
Length = 158
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>RGD|1307101 [details] [associations]
symbol:Lmo2 "LIM domain only 2" species:10116 "Rattus
norvegicus" [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0000981
"sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISO] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=ISO] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001228 "RNA polymerase II transcription
regulatory region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0035162 "embryonic hemopoiesis" evidence=ISO] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043425 "bHLH
transcription factor binding" evidence=ISO] [GO:0045647 "negative
regulation of erythrocyte differentiation" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0048037 "cofactor
binding" evidence=ISO] [GO:0070888 "E-box binding" evidence=ISO]
[GO:0097067 "cellular response to thyroid hormone stimulus"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
RGD:1307101 GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190 GO:GO:0000977
GO:GO:0042789 GO:GO:0070888 GO:GO:0035162 EMBL:CH473949
GO:GO:0097067 GO:GO:0045647 GO:GO:0001228 HOGENOM:HOG000232175
HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108 KO:K15612 OMA:CEKRIRA
OrthoDB:EOG4001KG IPI:IPI00373656 RefSeq:NP_001032435.2
UniGene:Rn.155591 GeneID:362176 KEGG:rno:362176 NextBio:678912
EMBL:BC105772 RefSeq:NP_001231708.1 RefSeq:NP_001231709.1
RefSeq:NP_001231710.1 SMR:Q3KRD2 STRING:Q3KRD2 UCSC:RGD:1307101
InParanoid:Q3KRD2 Genevestigator:Q3KRD2 Uniprot:Q3KRD2
Length = 158
Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>RGD|1306174 [details] [associations]
symbol:Lhx6 "LIM homeobox 6" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021799 "cerebral
cortex radially oriented cell migration" evidence=ISO] [GO:0021800
"cerebral cortex tangential migration" evidence=ISO] [GO:0021853
"cerebral cortex GABAergic interneuron migration" evidence=ISO]
[GO:0021877 "forebrain neuron fate commitment" evidence=ISO]
[GO:0021884 "forebrain neuron development" evidence=ISO]
[GO:0021895 "cerebral cortex neuron differentiation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048469 "cell maturation" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:1306174 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
IPI:IPI00948544 Ensembl:ENSRNOT00000068564 UCSC:RGD:1306174
Uniprot:D4A2X8
Length = 389
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 140 NKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 199
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 200 LVEEKVLCRIHYD 212
>UNIPROTKB|E1B8I6 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021884 GO:GO:0021877 GO:GO:0021853 GO:GO:0021800
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
KO:K09375 OMA:PATDQVM EMBL:DAAA02032024 EMBL:DAAA02032025
IPI:IPI00716181 RefSeq:NP_001179777.1 UniGene:Bt.32055
Ensembl:ENSBTAT00000007266 GeneID:541261 KEGG:bta:541261
NextBio:20879100 Uniprot:E1B8I6
Length = 392
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
N + C F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F
Sbjct: 143 NKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFG 202
Query: 65 LRSGQLFCRQDFE 77
L ++ CR ++
Sbjct: 203 LVEEKVLCRIHYD 215
>UNIPROTKB|E2R2S6 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AAEX03005042 SMR:E2R2S6 Ensembl:ENSCAFT00000018020
Uniprot:E2R2S6
Length = 330
Score = 144 (55.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|H0YL54 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:AL590115 HGNC:HGNC:14222
ProteinModelPortal:H0YL54 SMR:H0YL54 Ensembl:ENST00000561173
Bgee:H0YL54 Uniprot:H0YL54
Length = 336
Score = 144 (55.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 124 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 183
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 184 DSLVYCRAHFE 194
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 270 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 301
>RGD|71076 [details] [associations]
symbol:Lhx2 "LIM homeobox 2" species:10116 "Rattus norvegicus"
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=ISO] [GO:0001843
"neural tube closure" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0007411 "axon guidance"
evidence=IEA;ISO] [GO:0007420 "brain development" evidence=ISO]
[GO:0007498 "mesoderm development" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA;ISO] [GO:0021537 "telencephalon development"
evidence=ISO] [GO:0021978 "telencephalon regionalization"
evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030182 "neuron differentiation" evidence=IEP;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISO] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA;ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0030182
GO:GO:0007498 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843 GO:GO:0009953
eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988 GO:GO:2000678
HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804 IPI:IPI00199572
PIR:A47179 UniGene:Rn.81063 ProteinModelPortal:P36198 SMR:P36198
STRING:P36198 UCSC:RGD:71076 InParanoid:P36198 ArrayExpress:P36198
Genevestigator:P36198 GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 144 (55.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 94 SKDGSIYCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153
Query: 62 QFILRSGQLFCRQDFE 77
F ++ ++CR FE
Sbjct: 154 HFGMKDSLVYCRLHFE 169
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 260 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 292
>UNIPROTKB|P36198 [details] [associations]
symbol:Lhx2 "LIM/homeobox protein Lhx2" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71076 GO:GO:0005634 GO:GO:0007411 GO:GO:0045893
GO:GO:0030182 GO:GO:0007498 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001843
GO:GO:0009953 eggNOG:NOG240987 GO:GO:0021978 GO:GO:0000988
GO:GO:2000678 HOGENOM:HOG000034022 HOVERGEN:HBG006262 EMBL:L06804
IPI:IPI00199572 PIR:A47179 UniGene:Rn.81063
ProteinModelPortal:P36198 SMR:P36198 STRING:P36198 UCSC:RGD:71076
InParanoid:P36198 ArrayExpress:P36198 Genevestigator:P36198
GermOnline:ENSRNOG00000010551 Uniprot:P36198
Length = 426
Score = 144 (55.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 94 SKDGSIYCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGD 153
Query: 62 QFILRSGQLFCRQDFE 77
F ++ ++CR FE
Sbjct: 154 HFGMKDSLVYCRLHFE 169
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 260 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 292
>ZFIN|ZDB-GENE-051220-1 [details] [associations]
symbol:lhx2b "LIM homeobox 2b" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0007420 "brain development"
evidence=IMP] [GO:0007411 "axon guidance" evidence=IMP] [GO:0043010
"camera-type eye development" evidence=IMP] [GO:0030900 "forebrain
development" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0021537 "telencephalon development"
evidence=IMP] [GO:0007634 "optokinetic behavior" evidence=IMP]
[GO:0021554 "optic nerve development" evidence=IMP] [GO:0009416
"response to light stimulus" evidence=IMP] [GO:0071632 "optomotor
response" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-051220-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0010468
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0021537 GO:GO:0031290
GO:GO:0007634 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:CNENDAE
EMBL:AL929566 EMBL:BX005074 IPI:IPI00505332 RefSeq:NP_001035099.3
UniGene:Dr.16318 SMR:B0R107 Ensembl:ENSDART00000148020
GeneID:791744 KEGG:dre:791744 CTD:791744 NextBio:20930769
Uniprot:B0R107
Length = 427
Score = 144 (55.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 3 SHNSHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + + C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+
Sbjct: 126 SKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGD 185
Query: 62 QFILRSGQLFCRQDFE 77
F ++ ++CR FE
Sbjct: 186 HFGMKDSLVYCRLHFE 201
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 282 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 314
>ZFIN|ZDB-GENE-980526-419 [details] [associations]
symbol:lmo2 "LIM domain only 2 (rhombotin-like 1)"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0061304 "retinal blood vessel morphogenesis"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0030218 "erythrocyte
differentiation" evidence=IGI] [GO:0035162 "embryonic hemopoiesis"
evidence=IMP] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
ZFIN:ZDB-GENE-980526-419 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 GO:GO:0030218 GeneTree:ENSGT00680000099670
GO:GO:0035162 HSSP:P25801 GO:GO:0061304 HOGENOM:HOG000232175
HOVERGEN:HBG054231 CTD:4005 eggNOG:NOG319108 KO:K15612 OMA:CEKRIRA
OrthoDB:EOG4001KG EMBL:AF191560 EMBL:CT025900 EMBL:BC093136
IPI:IPI00500159 RefSeq:NP_571186.1 UniGene:Dr.79808
ProteinModelPortal:Q9PTJ3 SMR:Q9PTJ3 STRING:Q9PTJ3
Ensembl:ENSDART00000134247 GeneID:30332 KEGG:dre:30332
InParanoid:Q567L0 NextBio:20806764 Bgee:Q9PTJ3 Uniprot:Q9PTJ3
Length = 159
Score = 129 (50.5 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD-FE 77
+ C QD FE
Sbjct: 140 SDIVCEQDIFE 150
>UNIPROTKB|A2I8Z7 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:223369
"Astyanax fasciatus" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:EF175738
ProteinModelPortal:A2I8Z7 Uniprot:A2I8Z7
Length = 377
Score = 148 (57.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F +R
Sbjct: 99 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMR 158
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 159 ENLVYCRAHFE 169
>ZFIN|ZDB-GENE-050417-210 [details] [associations]
symbol:lhx9 "LIM homeobox 9" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-050417-210 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG CTD:56956
EMBL:AB188254 EMBL:BX004971 EMBL:BX511183 EMBL:BC163023
EMBL:BC163060 EMBL:BC163073 IPI:IPI00635283 RefSeq:NP_001032320.1
UniGene:Dr.42632 ProteinModelPortal:Q1LWV4 SMR:Q1LWV4 STRING:Q1LWV4
Ensembl:ENSDART00000054807 GeneID:550405 KEGG:dre:550405
InParanoid:Q1LWV4 NextBio:20879654 Bgee:Q1LWV4 Uniprot:Q1LWV4
Length = 396
Score = 145 (56.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DNLVYCRVHFE 188
Score = 38 (18.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|Q58CW3 [details] [associations]
symbol:LHX9 "LIM homeobox 9" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
IPI:IPI00692674 UniGene:Bt.31799 CTD:56956 EMBL:DAAA02043909
EMBL:DAAA02043910 EMBL:BT021834 IPI:IPI00903761
RefSeq:NP_001019715.1 SMR:Q58CW3 Ensembl:ENSBTAT00000017945
GeneID:515012 KEGG:bta:515012 InParanoid:Q58CW3 NextBio:20871620
Uniprot:Q58CW3
Length = 378
Score = 144 (55.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 99 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 158
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 159 DSLVYCRAHFE 169
Score = 38 (18.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 245 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 276
>UNIPROTKB|Q5M8V8 [details] [associations]
symbol:lmo2 "Rhombotin-2" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0005634 "nucleus" evidence=ISS] [GO:0030218
"erythrocyte differentiation" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0030218
GO:GO:0001568 GeneTree:ENSGT00680000099670 GO:GO:0035162
HSSP:P25801 HOGENOM:HOG000232175 HOVERGEN:HBG054231 CTD:4005
eggNOG:NOG319108 KO:K15612 OrthoDB:EOG4001KG EMBL:BC087809
RefSeq:NP_001011238.1 UniGene:Str.14577 ProteinModelPortal:Q5M8V8
SMR:Q5M8V8 STRING:Q5M8V8 Ensembl:ENSXETT00000008646 GeneID:496679
KEGG:xtr:496679 Xenbase:XB-GENE-479144 InParanoid:Q5M8V8
OMA:TKLNEMM Bgee:Q5M8V8 Uniprot:Q5M8V8
Length = 158
Score = 128 (50.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ EM MR + VYHL CF C C + G++++L +
Sbjct: 80 CRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 139
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 140 SDIVCEQD 147
>RGD|727956 [details] [associations]
symbol:Lhx9 "LIM homeobox 9" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0008585 "female gonad development"
evidence=IEA;ISO] [GO:0035262 "gonad morphogenesis"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AY273890
RGD:727956 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0008585
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584
Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG HSSP:P61969
CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 144 (55.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 109 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 168
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 169 DSLVYCRAHFE 179
Score = 38 (18.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 255 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 286
>UNIPROTKB|Q80W90 [details] [associations]
symbol:Lhx9 "LIM/homeobox protein Lhx9" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 EMBL:AY273890 RGD:727956 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
HSSP:P61969 CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 144 (55.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 109 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 168
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 169 DSLVYCRAHFE 179
Score = 38 (18.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 255 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 286
>UNIPROTKB|A0JNI8 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 GO:GO:0035262 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:BT026326 EMBL:BC126704 IPI:IPI00692674
IPI:IPI00839239 UniGene:Bt.31799 ProteinModelPortal:A0JNI8
SMR:A0JNI8 Ensembl:ENSBTAT00000043591 Ensembl:ENSBTAT00000054943
InParanoid:Q0V893 OMA:AAMLFHG Uniprot:A0JNI8
Length = 397
Score = 144 (55.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|E2R2S5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0008585 GO:GO:0046872
GO:GO:0008283 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262 OMA:AAMLFHG
CTD:56956 EMBL:AAEX03005042 RefSeq:XP_848787.1 SMR:E2R2S5
Ensembl:ENSCAFT00000018021 GeneID:490257 KEGG:cfa:490257
NextBio:20863313 Uniprot:E2R2S5
Length = 397
Score = 144 (55.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|Q9NQ69 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0008585
"female gonad development" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0003714
"transcription corepressor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 EMBL:CH471067 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 KO:K09373 GO:GO:0035262 HOVERGEN:HBG006262
OrthoDB:EOG4G4GQK OMA:AAMLFHG CTD:56956 EMBL:AJ277915 EMBL:AJ277916
EMBL:AJ277917 EMBL:AJ277918 EMBL:AJ277919 EMBL:AJ277920
EMBL:AJ296272 EMBL:AY273889 EMBL:AL590115 EMBL:BC131622
IPI:IPI00328729 IPI:IPI00396103 IPI:IPI00642345 IPI:IPI00642361
RefSeq:NP_001014434.1 RefSeq:NP_064589.2 UniGene:Hs.442578
UniGene:Hs.706475 PDB:2DMQ PDBsum:2DMQ ProteinModelPortal:Q9NQ69
SMR:Q9NQ69 STRING:Q9NQ69 PhosphoSite:Q9NQ69 DMDM:224471883
PRIDE:Q9NQ69 Ensembl:ENST00000337020 Ensembl:ENST00000367387
Ensembl:ENST00000367390 Ensembl:ENST00000367391 GeneID:56956
KEGG:hsa:56956 UCSC:uc001gui.1 UCSC:uc001guk.1
GeneCards:GC01P197881 HGNC:HGNC:14222 HPA:HPA009695 MIM:606066
neXtProt:NX_Q9NQ69 PharmGKB:PA30368 PhylomeDB:Q9NQ69
EvolutionaryTrace:Q9NQ69 GenomeRNAi:56956 NextBio:62575
ArrayExpress:Q9NQ69 Bgee:Q9NQ69 CleanEx:HS_LHX9
Genevestigator:Q9NQ69 GermOnline:ENSG00000143355 Uniprot:Q9NQ69
Length = 397
Score = 144 (55.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|F1S5F5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 GO:GO:0035262 OMA:AAMLFHG
EMBL:FP325281 Ensembl:ENSSSCT00000011930 Uniprot:F1S5F5
Length = 397
Score = 144 (55.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>MGI|MGI:1316721 [details] [associations]
symbol:Lhx9 "LIM homeobox protein 9" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0008585 "female gonad development" evidence=IMP] [GO:0035262
"gonad morphogenesis" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1316721 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
CTD:56956 EMBL:AJ243851 EMBL:AJ243852 EMBL:AJ243853 EMBL:AJ243854
EMBL:AJ243855 EMBL:AJ243856 EMBL:AJ243857 EMBL:AC154398
EMBL:BC072623 EMBL:AF134761 EMBL:AF113518 IPI:IPI00124662
IPI:IPI00227842 IPI:IPI00626920 IPI:IPI00830796
RefSeq:NP_001020736.1 RefSeq:NP_001036042.1 RefSeq:NP_034844.1
UniGene:Mm.250732 ProteinModelPortal:Q9WUH2 SMR:Q9WUH2
IntAct:Q9WUH2 MINT:MINT-1340747 STRING:Q9WUH2 PRIDE:Q9WUH2
Ensembl:ENSMUST00000019374 Ensembl:ENSMUST00000046870
Ensembl:ENSMUST00000093486 Ensembl:ENSMUST00000112026
Ensembl:ENSMUST00000112030 GeneID:16876 KEGG:mmu:16876
UCSC:uc007cvr.1 UCSC:uc007cvs.1 UCSC:uc007cvu.1 ChiTaRS:LHX9
NextBio:290864 Bgee:Q9WUH2 CleanEx:MM_LHX9 Genevestigator:Q9WUH2
GermOnline:ENSMUSG00000019230 Uniprot:Q9WUH2
Length = 397
Score = 144 (55.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFE 77
++CR FE
Sbjct: 178 DSLVYCRAHFE 188
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 264 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 295
>UNIPROTKB|Q90881 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IEP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0008045 "motor neuron axon guidance"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021522 eggNOG:NOG240987 KO:K09373 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:L35566 IPI:IPI00682838 PIR:JC5658
RefSeq:NP_990757.1 UniGene:Gga.2348 HSSP:P61969 STRING:Q90881
GeneID:396397 KEGG:gga:396397 CTD:56956 InParanoid:Q90881
NextBio:20816439 Uniprot:Q90881
Length = 397
Score = 147 (56.8 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 118 IYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMK 177
Query: 67 SGQLFCRQDFEKEMYLMQQSSP 88
++CR FE L+Q P
Sbjct: 178 DNLVYCRAHFES---LLQGEYP 196
>WB|WBGene00002987 [details] [associations]
symbol:lim-4 species:6239 "Caenorhabditis elegans"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0005623 "cell" evidence=IDA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0001708
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0005623
GeneTree:ENSGT00700000104050 EMBL:FO081410 HSSP:P50480 EMBL:U72348
PIR:T27637 RefSeq:NP_508669.1 UniGene:Cel.665
ProteinModelPortal:G5EEA1 SMR:G5EEA1 EnsemblMetazoa:ZC64.4
GeneID:180672 KEGG:cel:CELE_ZC64.4 CTD:180672 WormBase:ZC64.4
OMA:ARQKKWH NextBio:910388 Uniprot:G5EEA1
Length = 355
Score = 146 (56.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 6 SHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL 65
+HV+ R G KCA C + + V RA+++VYHL CF C C + L GE++ L
Sbjct: 152 THVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYAL 211
Query: 66 RSGQLFCRQDF 76
+ G L C+Q F
Sbjct: 212 QEGNLLCKQHF 222
>UNIPROTKB|F5H3S4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:AC007529
EMBL:AC007552 HGNC:HGNC:6643 IPI:IPI01011541 SMR:F5H3S4
Ensembl:ENST00000537757 Ensembl:ENST00000539534
Ensembl:ENST00000546281 Uniprot:F5H3S4
Length = 118
Score = 126 (49.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQPLQKGEQF 63
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q G++F
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKF 118
>FB|FBgn0000099 [details] [associations]
symbol:ap "apterous" species:7227 "Drosophila melanogaster"
[GO:0007559 "histolysis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0007472 "wing disc
morphogenesis" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;NAS] [GO:0007481 "haltere disc morphogenesis"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0007399 "nervous system development" evidence=IMP;TAS]
[GO:0007517 "muscle organ development" evidence=IMP;TAS]
[GO:0007479 "leg disc proximal/distal pattern formation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=NAS]
[GO:0048190 "wing disc dorsal/ventral pattern formation"
evidence=IGI;IMP;TAS] [GO:0007451 "dorsal/ventral lineage
restriction, imaginal disc" evidence=TAS] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=TAS] [GO:0007450
"dorsal/ventral pattern formation, imaginal disc" evidence=TAS]
[GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0007526
"larval somatic muscle development" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
EMBL:AE013599 GO:GO:0005634 GO:GO:0007411 GO:GO:0048190
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0007526 GO:GO:0007476 EMBL:X65158 EMBL:M92841
EMBL:AY069815 EMBL:BT005201 PIR:JH0718 RefSeq:NP_001163058.1
RefSeq:NP_001163059.1 RefSeq:NP_523621.2 RefSeq:NP_724428.1
UniGene:Dm.4746 ProteinModelPortal:P29673 SMR:P29673 DIP:DIP-23617N
IntAct:P29673 MINT:MINT-338208 STRING:P29673 PaxDb:P29673
PRIDE:P29673 EnsemblMetazoa:FBtr0086058 GeneID:35509
KEGG:dme:Dmel_CG8376 UCSC:CG8376-RA CTD:11763 FlyBase:FBgn0000099
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 InParanoid:P29673
KO:K09373 OMA:THYSIAR OrthoDB:EOG46Q57V PhylomeDB:P29673 ChiTaRS:ap
GenomeRNAi:35509 NextBio:793761 Bgee:P29673 GermOnline:CG8376
GO:GO:0000977 GO:GO:0045165 GO:GO:0007451 GO:GO:0007559
GO:GO:0036011 GO:GO:0007479 Uniprot:P29673
Length = 469
Score = 142 (55.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 3 SHNSHVSCHPRGFRLYGVK-CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGE 61
S + ++ C + +G + C+RC + +E+VMRA++ V+H+ CF C +C PL KG+
Sbjct: 190 SRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGD 249
Query: 62 QFILRSGQLFCRQDF 76
Q+ + ++CR +
Sbjct: 250 QYGIIDALIYCRTHY 264
Score = 41 (19.5 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 363 SSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAK 395
>UNIPROTKB|F1M2D9 [details] [associations]
symbol:Lmo2 "Protein Lmo2" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1307101 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 IPI:IPI00949163 Ensembl:ENSRNOT00000068575
ArrayExpress:F1M2D9 Uniprot:F1M2D9
Length = 156
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
CA C R+ +EM MR + VYHL CF C C + G++++L + + C QD
Sbjct: 92 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 145
>UNIPROTKB|F1P3H6 [details] [associations]
symbol:F1P3H6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000988 "protein binding transcription factor activity"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0007498 "mesoderm
development" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021978 "telencephalon
regionalization" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:CNENDAE EMBL:AADN02026343
EMBL:AADN02026344 EMBL:AADN02026345 IPI:IPI00597964
Ensembl:ENSGALT00000034919 Uniprot:F1P3H6
Length = 413
Score = 140 (54.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 11 HPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQ 69
H +R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++
Sbjct: 117 HLEFYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNL 176
Query: 70 LFCRQDFE 77
++CR FE
Sbjct: 177 VYCRLHFE 184
Score = 41 (19.5 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S +KR + +Q R KS F I+ P K
Sbjct: 269 SNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 301
>UNIPROTKB|H7C0H1 [details] [associations]
symbol:LHX2 "LIM/homeobox protein Lhx2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
EMBL:AC006450 HGNC:HGNC:6594 ChiTaRS:LHX2 OMA:CNENDAE EMBL:AL158052
ProteinModelPortal:H7C0H1 Ensembl:ENST00000446480 Uniprot:H7C0H1
Length = 412
Score = 139 (54.0 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 15 FRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCR 73
+R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F ++ ++CR
Sbjct: 113 YRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCR 172
Query: 74 QDFEKEMYLMQQSSPS 89
FE L+Q P+
Sbjct: 173 LHFEA---LLQGEYPA 185
Score = 42 (19.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S+ +KR + +Q R KS F I+ P K
Sbjct: 268 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 300
>UNIPROTKB|F1NL26 [details] [associations]
symbol:F1NL26 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02026365 EMBL:AADN02026363
EMBL:AADN02026364 IPI:IPI01017195 Ensembl:ENSGALT00000038819
Uniprot:F1NL26
Length = 234
Score = 139 (54.0 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
+G KCARCG ++ + V RA+ + YHL CF C C + L GE+F L ++ CR ++
Sbjct: 86 FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 145
>UNIPROTKB|E1BXQ7 [details] [associations]
symbol:E1BXQ7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 EMBL:AADN02026343 EMBL:AADN02026344
EMBL:AADN02026345 IPI:IPI00684197 Ensembl:ENSGALT00000001693
Uniprot:E1BXQ7
Length = 395
Score = 139 (54.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 6 SHVSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFI 64
SH P R + V +CARC + EMVMRA+ VYHL CF C C + L G+ F
Sbjct: 94 SHRLLWPLFCRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG 153
Query: 65 LRSGQLFCRQDFE 77
++ ++CR FE
Sbjct: 154 MKDNLVYCRLHFE 166
Score = 41 (19.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 137 STMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
S +KR + +Q R KS F I+ P K
Sbjct: 251 SNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAK 283
>WB|WBGene00002989 [details] [associations]
symbol:lim-7 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0060323 "head morphogenesis"
evidence=IMP] [GO:0007588 "excretion" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] [GO:0060465 "pharynx development"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0002119 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0040011 GO:GO:0007588
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060465 GeneTree:ENSGT00700000104050 GO:GO:0035262
GO:GO:0060323 KO:K09370 HSSP:P50480 EMBL:U73946 EMBL:FO080336
PIR:T33049 RefSeq:NP_491668.1 UniGene:Cel.18382
ProteinModelPortal:G5EC36 SMR:G5EC36 IntAct:G5EC36
EnsemblMetazoa:C04F1.3 GeneID:172236 KEGG:cel:CELE_C04F1.3
CTD:172236 WormBase:C04F1.3 OMA:DEWDEER NextBio:874619
Uniprot:G5EC36
Length = 452
Score = 145 (56.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 5 NSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRA-QSHVYHLPCFVCVICCQPLQKGEQF 63
N C RL+ +C+RC ++VMRA +V+HL CF CV C + LQ GE+F
Sbjct: 101 NGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVACEKRLQTGEEF 160
Query: 64 ILRSGQLFCRQD 75
+++ L+CR D
Sbjct: 161 QIKNNSLYCRSD 172
>UNIPROTKB|E1C2D6 [details] [associations]
symbol:E1C2D6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001558
"regulation of cell growth" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0021542 "dentate gyrus development"
evidence=IEA] [GO:0021549 "cerebellum development" evidence=IEA]
[GO:0021953 "central nervous system neuron differentiation"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001558 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
EMBL:AADN02034025 EMBL:AADN02034026 EMBL:AADN02034027
EMBL:AADN02034028 EMBL:AADN02034029 IPI:IPI00590021
Ensembl:ENSGALT00000005411 OMA:XKSDDEE Uniprot:E1C2D6
Length = 386
Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
TILT+ QRR FK+SFEVS KPCRKV T S R + NQR + K
Sbjct: 205 TILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK 256
Score = 104 (41.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRKV 170
KR + ILT QRR FK+SFE+SS PCRKV
Sbjct: 201 KRPRTILTTQQRRAFKASFEVSSKPCRKV 229
Score = 79 (32.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
C C R++ ++R ++H C C C +PL R +L+C+ D+EK
Sbjct: 35 CEGC-QRVIADRFLLRLNDSLWHERCVQCTSCKEPLHT--TCFYRDKKLYCKLDYEK 88
Score = 54 (24.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 43 YHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEKEMYLMQQSSP 88
YH CFVC + L+ +L+ GQ+ C+ + + ++ SP
Sbjct: 122 YHC-CFVCA--SEGLRGSNAHVLQMGQIRCKGNPSPAKQIFRKVSP 164
>UNIPROTKB|F1NLU0 [details] [associations]
symbol:F1NLU0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021799
"cerebral cortex radially oriented cell migration" evidence=IEA]
[GO:0021800 "cerebral cortex tangential migration" evidence=IEA]
[GO:0021853 "cerebral cortex GABAergic interneuron migration"
evidence=IEA] [GO:0021877 "forebrain neuron fate commitment"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 OMA:PATDQVM
EMBL:AADN02026365 EMBL:AADN02026363 EMBL:AADN02026364
IPI:IPI00603083 Ensembl:ENSGALT00000002057 Uniprot:F1NLU0
Length = 354
Score = 141 (54.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 15 FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
F +G KCARCG ++ + V RA+ + YHL CF C C + L GE+F L ++ CR
Sbjct: 129 FGRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRI 188
Query: 75 DFE 77
++
Sbjct: 189 HYD 191
>FB|FBgn0013751 [details] [associations]
symbol:Awh "Arrowhead" species:7227 "Drosophila melanogaster"
[GO:0007444 "imaginal disc development" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
EMBL:AE014296 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007444 EMBL:U82539 EMBL:AY071197
EMBL:BT025230 RefSeq:NP_523907.2 RefSeq:NP_728906.1 UniGene:Dm.6063
ProteinModelPortal:Q8IRC7 SMR:Q8IRC7 PRIDE:Q8IRC7
EnsemblMetazoa:FBtr0073156 GeneID:38451 KEGG:dme:Dmel_CG1072
UCSC:CG1072-RA CTD:38451 FlyBase:FBgn0013751 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 HOGENOM:HOG000214908 InParanoid:Q8IRC7
OMA:IHDRYLL OrthoDB:EOG42BVRJ PhylomeDB:Q8IRC7 GenomeRNAi:38451
NextBio:808729 Bgee:Q8IRC7 GermOnline:CG1072 Uniprot:Q8IRC7
Length = 275
Score = 138 (53.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 50/214 (23%), Positives = 89/214 (41%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
V C + +G KC++C + + V RA+ V+HL CF C C + L GEQF L
Sbjct: 55 VYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMD 114
Query: 68 GQLFCRQDFEKEMYLMQQSSPSDDMMLDENCXXXXXXXXXXXXX-TILTSAQRRQFKSSF 126
++ C+ + + ++ + S D E C T T Q + +++F
Sbjct: 115 DRVLCKAHY---LETVEGGTTSSD----EGCDGDGYHKSKTKRVRTTFTEEQLQVLQANF 167
Query: 127 EVSPKP----CRKVSTMN--SKRAKNILTPNQRRQFKSSFEISSMPCRKV---GVHGHY- 176
++ P +++++ SKR + N R + K R+ H
Sbjct: 168 QIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHAGKNKIREPEGSSFARHIN 227
Query: 177 LSLGMSLQDSSDS-IFASSTKP-LNPNHPYSPDD 208
L L S Q+++ + + + +K L P H S D+
Sbjct: 228 LQLTYSFQNNAQNPMHLNGSKAGLYPTHESSMDE 261
>WB|WBGene00003000 [details] [associations]
symbol:lin-11 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0001708 "cell
fate specification" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0045595 "regulation of cell differentiation"
evidence=IMP] [GO:0030334 "regulation of cell migration"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0018991
GO:GO:0040010 GO:GO:0045595 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1
ProteinModelPortal:P20154 SMR:P20154 STRING:P20154
EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3
UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154
OMA:NDQQFYP NextBio:877423 Uniprot:P20154
Length = 405
Score = 132 (51.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 3 SHNSHVSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQ 62
S + + C R Y +CA C +L ++V RA+ V+H+ CF C +C + L G+Q
Sbjct: 108 SRDGLILCKTDFSRRYSQRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQ 167
Query: 63 FILRSGQLF-CRQDFE 77
+ G F C+ DF+
Sbjct: 168 LYIMEGNRFVCQSDFQ 183
Score = 45 (20.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 112 TILTSAQRRQFKSSFEVSPKPCRKV 136
T + + Q K++F +PKP R +
Sbjct: 246 TTIKAKQLETLKNAFAATPKPTRHI 270
>UNIPROTKB|F5GYZ6 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:AC007529
EMBL:AC007552 HGNC:HGNC:6643 IPI:IPI01010126
ProteinModelPortal:F5GYZ6 SMR:F5GYZ6 Ensembl:ENST00000546279
ArrayExpress:F5GYZ6 Bgee:F5GYZ6 Uniprot:F5GYZ6
Length = 110
Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 8 VSCHPRGFRLYGV--KCARCGDRLLP-HEMVMRAQSHVYHLPCFVCVICCQ 55
+ C RL+GV CA C +L+P EMVMRA+ +VYHL CF C +C Q
Sbjct: 61 ILCRRDYLRLFGVTGNCAACS-KLIPAFEMVMRAKDNVYHLDCFACQLCNQ 110
>UNIPROTKB|F1LNA1 [details] [associations]
symbol:Lmo2 "Protein Lmo2" species:10116 "Rattus
norvegicus" [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001228 "RNA
polymerase II transcription regulatory region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0035162 "embryonic hemopoiesis" evidence=IEA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0048037 "cofactor binding" evidence=IEA]
[GO:0070888 "E-box binding" evidence=IEA] [GO:0097067 "cellular
response to thyroid hormone stimulus" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
RGD:1307101 GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0048037 GO:GO:0001190
GeneTree:ENSGT00680000099670 GO:GO:0000977 GO:GO:0042789
GO:GO:0070888 GO:GO:0035162 GO:GO:0097067 GO:GO:0045647
GO:GO:0001228 CTD:4005 KO:K15612 IPI:IPI00373656
RefSeq:NP_001032435.2 UniGene:Rn.155591 ProteinModelPortal:F1LNA1
SMR:F1LNA1 Ensembl:ENSRNOT00000012625 GeneID:362176 KEGG:rno:362176
NextBio:678912 ArrayExpress:F1LNA1 Uniprot:F1LNA1
Length = 220
Score = 131 (51.2 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 142 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 201
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 202 SDIVCEQD 209
>UNIPROTKB|F1PKL3 [details] [associations]
symbol:LMO2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:CEKRIRA EMBL:AAEX03011393
EMBL:AAEX03011391 EMBL:AAEX03011392 EMBL:AAEX03011394
EMBL:AAEX03011395 Ensembl:ENSCAFT00000011428 Uniprot:F1PKL3
Length = 223
Score = 131 (51.2 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C R+ +EM MR + VYHL CF C C + G++++L +
Sbjct: 145 CRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN 204
Query: 68 GQLFCRQD 75
+ C QD
Sbjct: 205 SDIVCEQD 212
>UNIPROTKB|P91608 [details] [associations]
symbol:Bx "Dttg protein" species:7242 "Drosophila sp."
[GO:0002121 "inter-male aggressive behavior" evidence=IMP]
[GO:0005634 "nucleus" evidence=NAS] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IGI;IMP] [GO:0035218 "leg disc development"
evidence=IMP] [GO:0036011 "imaginal disc-derived leg segmentation"
evidence=IMP] [GO:0042220 "response to cocaine" evidence=IMP]
[GO:0045475 "locomotor rhythm" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0005634 GO:GO:0006911 GO:GO:0046872 GO:GO:0042220
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0002121 GO:GO:0045475
GO:GO:0007476 GO:GO:0036011 HSSP:P70662 EMBL:X83012
ProteinModelPortal:P91608 SMR:P91608 FlyBase:FBgn0000242
InParanoid:P91608 Uniprot:P91608
Length = 266
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 10 CHPRGFRLYGVK--CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
C RL+G CA C + EMVMRA+++VYHL CF C C G++F L
Sbjct: 95 CKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE 154
Query: 68 GQLFCRQDFEKEM 80
++ C D+E+ +
Sbjct: 155 NKILCEYDYEERL 167
>UNIPROTKB|A2PZF9 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8410
"Glandirana rugosa" [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HOVERGEN:HBG006262 EMBL:AB269882
EMBL:AB269883 EMBL:AB269884 EMBL:AB269885 EMBL:AB269886
ProteinModelPortal:A2PZF9 SMR:A2PZF9 Uniprot:A2PZF9
Length = 379
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 8 VSCHPRGFRLYGV-KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILR 66
+ C +R + V +CARC + E+VMRA+ VYHL CF C C + L G+ F ++
Sbjct: 100 IYCKEDYYRRFSVQRCARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMK 159
Query: 67 SGQLFCRQDFE 77
++ R FE
Sbjct: 160 ENLVYRRAHFE 170
Score = 36 (17.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 138 TMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +KR + +Q R KS F I+ P K
Sbjct: 246 SQKTKRMRTSFKHHQLRTTKSYFAINHNPDAK 277
>ZFIN|ZDB-GENE-091118-109 [details] [associations]
symbol:lhx2a "LIM homeobox 2a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-091118-109 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BX470252 IPI:IPI00994306 Ensembl:ENSDART00000134360
ArrayExpress:E9QBI8 Bgee:E9QBI8 Uniprot:E9QBI8
Length = 328
Score = 129 (50.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 42/162 (25%), Positives = 67/162 (41%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQD 75
R +CARC + E+VMRA+ VYHL CF C C + L G+ + ++ ++CR
Sbjct: 70 RFSSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCRAH 129
Query: 76 FEKE----MYLMQQSSP---SDDMMLDENCXXXXXXXXXXXXXTILTSAQRRQFKSSF-E 127
++E +Y SS S+ DE + +A + S +
Sbjct: 130 IQRECHADLYYSDMSSRETNSESHTYDEESPVHRARVRRRKNNS---TADHIAYSSDVSD 186
Query: 128 VSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRK 169
+ +VS SKR + +Q R +S F + P K
Sbjct: 187 LGVDLSERVSCQKSKRMRTSFKHHQLRSMQSFFTHNHNPDAK 228
>ZFIN|ZDB-GENE-081105-153 [details] [associations]
symbol:lhx8b "LIM homeobox 8b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-081105-153 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CR388090
IPI:IPI00635015 Ensembl:ENSDART00000061776 Uniprot:F1QST6
Length = 295
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C FR + C+ C + L + V RA+ +VYHL CF C C + L GE+F L
Sbjct: 71 IFCKLHYFRRFQTWCSCCRETLHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVG 130
Query: 68 GQLFCR 73
+L CR
Sbjct: 131 EKLLCR 136
>ZFIN|ZDB-GENE-061013-662 [details] [associations]
symbol:zgc:154176 "zgc:154176" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 ZFIN:ZDB-GENE-061013-662
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:BC124831
IPI:IPI00800995 RefSeq:NP_001070771.1 UniGene:Dr.104520
ProteinModelPortal:Q08B86 GeneID:768160 KEGG:dre:768160
HOVERGEN:HBG106905 InParanoid:Q08B86 NextBio:20918477
ArrayExpress:Q08B86 Uniprot:Q08B86
Length = 292
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS--GQLFCRQDFEKE 79
C CGD + H V+RA YH PCFVC C QP+ GEQ + G+++C QD+ ++
Sbjct: 165 CWACGDVIKDH--VIRALERAYHPPCFVCTTCRQPI--GEQRFAQGEVGEVYCLQDYYRK 220
>UNIPROTKB|H3BPU6 [details] [associations]
symbol:LIMS3 "LIM and senescent cell
antigen-like-containing domain protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:AC013271
HGNC:HGNC:30047 EMBL:AC013268 ProteinModelPortal:H3BPU6 SMR:H3BPU6
Ensembl:ENST00000303002 Bgee:H3BPU6 Uniprot:H3BPU6
Length = 143
Score = 104 (41.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
L C RC P E ++ + +YH CFVC C Q +G F G+ +C DF
Sbjct: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDF 125
Query: 77 E 77
+
Sbjct: 126 Q 126
>RGD|1305273 [details] [associations]
symbol:Lims2 "LIM and senescent cell antigen like domains 2"
species:10116 "Rattus norvegicus" [GO:0005925 "focal adhesion"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016337 "cell-cell adhesion" evidence=ISO] [GO:0045216
"cell-cell junction organization" evidence=ISO] [GO:2001046
"positive regulation of integrin-mediated signaling pathway"
evidence=ISO] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 RGD:1305273 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 eggNOG:NOG263350
GeneTree:ENSGT00690000101670 OrthoDB:EOG4NP73S HOGENOM:HOG000253950
HOVERGEN:HBG000053 InterPro:IPR017351 PIRSF:PIRSF038003 CTD:55679
EMBL:BC087108 IPI:IPI00364955 RefSeq:NP_001012163.1
UniGene:Rn.115282 SMR:Q5PQM7 Ensembl:ENSRNOT00000061054
GeneID:361303 KEGG:rno:361303 UCSC:RGD:1305273 OMA:CEVELAD
NextBio:675875 Genevestigator:Q5PQM7 Uniprot:Q5PQM7
Length = 306
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 10 CQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 64
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 192 ASSTKPLN-PNHPYSPDDSYAMHSNDSFCSSDISLD 226
A +PL N PY PD H + S C +++ D
Sbjct: 141 AIDEQPLMFKNDPYHPD-----HFSCSHCGKELTSD 171
>UNIPROTKB|D6RHE7 [details] [associations]
symbol:ABLIM3 "Actin-binding LIM protein 3" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
HGNC:HGNC:29132 EMBL:AC012613 EMBL:AC091940 IPI:IPI00965223
ProteinModelPortal:D6RHE7 SMR:D6RHE7 Ensembl:ENST00000515171
ArrayExpress:D6RHE7 Bgee:D6RHE7 Uniprot:D6RHE7
Length = 151
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 11 HPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVIC-CQPLQKGEQFILRSGQ 69
+PRG ++C RCGD V+R ++ +H+ CF C +C C Q G F ++ +
Sbjct: 13 NPRGSSNV-IQCYRCGDTCKGE--VVRVHNNHFHIRCFTCQVCGCGLAQSG--FFFKNQE 67
Query: 70 LFCRQDFEKEMY 81
C QD++ ++Y
Sbjct: 68 YICTQDYQ-QLY 78
>UNIPROTKB|F1M9H8 [details] [associations]
symbol:Lims2 "Protein Lims2" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1305273 GO:GO:0046872 GO:GO:0008270 GO:GO:0005925
Gene3D:2.10.110.10 InterPro:IPR017351 PIRSF:PIRSF038003
IPI:IPI00734787 Ensembl:ENSRNOT00000021684 ArrayExpress:F1M9H8
Uniprot:F1M9H8
Length = 337
Score = 112 (44.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 11 CQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 65
Score = 40 (19.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 192 ASSTKPLN-PNHPYSPDDSYAMHSNDSFCSSDISLD 226
A +PL N PY PD H + S C +++ D
Sbjct: 142 AIDEQPLMFKNDPYHPD-----HFSCSHCGKELTSD 172
>ZFIN|ZDB-GENE-040426-2092 [details] [associations]
symbol:pdlim7 "PDZ and LIM domain 7" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001756 "somitogenesis" evidence=IMP] [GO:0003143 "embryonic
heart tube morphogenesis" evidence=IGI] [GO:0031941 "filamentous
actin" evidence=IDA] [GO:0003294 "atrial ventricular junction
remodeling" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0003190 "atrioventricular valve
formation" evidence=IMP] [GO:0015629 "actin cytoskeleton"
evidence=IPI] [GO:0001947 "heart looping" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 ZFIN:ZDB-GENE-040426-2092 GO:GO:0048471
GO:GO:0046872 GO:GO:0008270 GO:GO:0001756 Gene3D:2.10.110.10
GO:GO:0031941 SUPFAM:SSF50156 GO:GO:0001947 GO:GO:0003294
GO:GO:0003190 eggNOG:NOG286537 HOVERGEN:HBG051478 CTD:9260
EMBL:BC061704 IPI:IPI00493189 RefSeq:NP_957134.1 UniGene:Dr.118064
UniGene:Dr.121170 UniGene:Dr.85085 ProteinModelPortal:Q6P7E4
SMR:Q6P7E4 STRING:Q6P7E4 PRIDE:Q6P7E4 GeneID:393813 KEGG:dre:393813
InParanoid:Q6P7E4 NextBio:20814803 Uniprot:Q6P7E4
Length = 419
Score = 116 (45.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
Y CA+C +++ E +M A YH+ CF+C C P+ + + F + G+ +C +D+E
Sbjct: 299 YSPNCAKC-KKIITGE-IMHALKMTYHVQCFLCAACKLPI-RNQAFYMEEGEPYCERDYE 355
Query: 78 K 78
K
Sbjct: 356 K 356
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 189 SIFASSTKPLNPNHPYSP 206
+ ++ KPL +H +SP
Sbjct: 401 TFYSKKDKPLCKSHAFSP 418
>FB|FBgn0020249 [details] [associations]
symbol:stck "steamer duck" species:7227 "Drosophila
melanogaster" [GO:0007475 "apposition of dorsal and ventral
imaginal disc-derived wing surfaces" evidence=IMP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0031252 "cell leading edge"
evidence=IDA] [GO:0046329 "negative regulation of JNK cascade"
evidence=IGI] [GO:0007391 "dorsal closure" evidence=IMP]
[GO:0008258 "head involution" evidence=IMP] [GO:0009880 "embryonic
pattern specification" evidence=IMP] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
EMBL:AE014297 GO:GO:0031252 GO:GO:0046872 GO:GO:0007391
GO:GO:0008270 Gene3D:2.10.110.10 GO:GO:0046329 GO:GO:0009880
GO:GO:0007475 GO:GO:0008258 GeneTree:ENSGT00690000101670
HSSP:P48059 OMA:QNRALCH InterPro:IPR017351 PIRSF:PIRSF038003
FlyBase:FBgn0020249 EMBL:BT012325 RefSeq:NP_731242.1
UniGene:Dm.2466 SMR:Q8INQ9 STRING:Q8INQ9 EnsemblMetazoa:FBtr0081846
GeneID:40999 KEGG:dme:Dmel_CG7954 UCSC:CG7954-RC CTD:40999
InParanoid:Q8INQ9 GenomeRNAi:40999 NextBio:821672 Uniprot:Q8INQ9
Length = 348
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
L + C RC D P E ++ + ++H CFVC C +P Q G F G+ +C +DF
Sbjct: 16 LGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGI-FYEFEGRKYCERDF 74
>UNIPROTKB|F1RQH7 [details] [associations]
symbol:LIMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005925 "focal adhesion" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 GO:GO:0046872
GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10
GeneTree:ENSGT00690000101670 InterPro:IPR017351 PIRSF:PIRSF038003
OMA:ECFRCEL EMBL:CU855997 Ensembl:ENSSSCT00000017273 Uniprot:F1RQH7
Length = 341
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 15 CQRCQARFAPSERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 69
>UNIPROTKB|Q2KJ33 [details] [associations]
symbol:LIMS2 "LIM and senescent cell
antigen-like-containing domain protein 2" species:9913 "Bos taurus"
[GO:0005925 "focal adhesion" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 GO:GO:0005886 GO:GO:0046872
GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10 eggNOG:NOG263350
GeneTree:ENSGT00690000101670 OrthoDB:EOG4NP73S HOGENOM:HOG000253950
HOVERGEN:HBG000053 InterPro:IPR017351 PIRSF:PIRSF038003
EMBL:BC105544 IPI:IPI00706428 RefSeq:NP_001124223.1
UniGene:Bt.32348 ProteinModelPortal:Q2KJ33 SMR:Q2KJ33
Ensembl:ENSBTAT00000008216 GeneID:515401 KEGG:bta:515401 CTD:55679
InParanoid:Q2KJ33 OMA:ECFRCEL NextBio:20871812 Uniprot:Q2KJ33
Length = 341
Score = 112 (44.5 bits), Expect = 0.00050, P = 0.00050
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 15 CQRCQARFAPAERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 69
>MGI|MGI:2385067 [details] [associations]
symbol:Lims2 "LIM and senescent cell antigen like domains 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005925 "focal adhesion" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016337 "cell-cell adhesion" evidence=IGI] [GO:0030054 "cell
junction" evidence=IEA] [GO:0045216 "cell-cell junction
organization" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:2001046 "positive regulation of integrin-mediated
signaling pathway" evidence=IGI] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 MGI:MGI:2385067
GO:GO:0005886 GO:GO:0046872 GO:GO:0008270 GO:GO:0005925
Gene3D:2.10.110.10 eggNOG:NOG263350 GeneTree:ENSGT00690000101670
OrthoDB:EOG4NP73S HSSP:P48059 HOGENOM:HOG000253950
HOVERGEN:HBG000053 InterPro:IPR017351 PIRSF:PIRSF038003 CTD:55679
OMA:ECFRCEL EMBL:AJ420860 EMBL:AJ420861 EMBL:AJ420863 EMBL:AJ420862
EMBL:BC010816 IPI:IPI00129009 RefSeq:NP_659111.1 UniGene:Mm.24551
ProteinModelPortal:Q91XD2 SMR:Q91XD2 STRING:Q91XD2
PhosphoSite:Q91XD2 PaxDb:Q91XD2 PRIDE:Q91XD2
Ensembl:ENSMUST00000025254 GeneID:225341 KEGG:mmu:225341
UCSC:uc008eiv.1 InParanoid:Q91XD2 ChiTaRS:LIMS2 NextBio:377625
Bgee:Q91XD2 CleanEx:MM_LIMS2 Genevestigator:Q91XD2
GermOnline:ENSMUSG00000024395 Uniprot:Q91XD2
Length = 341
Score = 112 (44.5 bits), Expect = 0.00050, P = 0.00050
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 15 CQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 69
>UNIPROTKB|F1PUC6 [details] [associations]
symbol:LIMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00690000101670 InterPro:IPR017351 PIRSF:PIRSF038003
EMBL:AAEX03011837 Ensembl:ENSCAFT00000006994 Uniprot:F1PUC6
Length = 362
Score = 112 (44.5 bits), Expect = 0.00055, P = 0.00055
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 36 CQRCQARFAPAERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 90
>UNIPROTKB|E2RNC7 [details] [associations]
symbol:LIMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00690000101670 InterPro:IPR017351 PIRSF:PIRSF038003
OMA:ECFRCEL EMBL:AAEX03011837 Ensembl:ENSCAFT00000006997
Uniprot:E2RNC7
Length = 387
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 61 CQRCQARFAPAERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 115
>ZFIN|ZDB-GENE-030131-874 [details] [associations]
symbol:si:dkey-23o10.3 "si:dkey-23o10.3"
species:7955 "Danio rerio" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153
ZFIN:ZDB-GENE-030131-874 HOVERGEN:HBG031499 Gene3D:1.10.950.10
Gene3D:2.10.110.10 SUPFAM:SSF47050 GeneTree:ENSGT00700000104021
HOGENOM:HOG000285997 NextBio:20888389 EMBL:CR457461 IPI:IPI00919355
Ensembl:ENSDART00000060067 Uniprot:F6PFJ2
Length = 682
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
RLYG KC CGD + E+V A YH CFVC +C +P G++ + C+Q
Sbjct: 75 RLYGTKCDSCGD-FISGEVVS-ALGRTYHPQCFVCSVCRKPFPIGDRVTFSGKECVCQQ 131
>ZFIN|ZDB-GENE-070112-1122 [details] [associations]
symbol:ablim3 "actin binding LIM protein family,
member 3" species:7955 "Danio rerio" [GO:0003779 "actin binding"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001781
InterPro:IPR003128 Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS51089 SMART:SM00132 SMART:SM00153
ZFIN:ZDB-GENE-070112-1122 eggNOG:NOG302299 HOVERGEN:HBG031499
Gene3D:1.10.950.10 Gene3D:2.10.110.10 SUPFAM:SSF47050
GeneTree:ENSGT00700000104021 HOGENOM:HOG000285997 OrthoDB:EOG4PNXGH
EMBL:CU151895 IPI:IPI00919704 UniGene:Dr.111054
Ensembl:ENSDART00000052595 NextBio:20888389 Uniprot:F6P113
Length = 683
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQ 74
RLYG KC CGD + E+V A YH CFVC +C +P G++ + C+Q
Sbjct: 76 RLYGTKCDSCGD-FISGEVVS-ALGRTYHPQCFVCSVCRKPFPIGDRVTFSGKECVCQQ 132
>UNIPROTKB|Q7Z4I7 [details] [associations]
symbol:LIMS2 "LIM and senescent cell
antigen-like-containing domain protein 2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005925 "focal adhesion" evidence=IEA] [GO:0005829 "cytosol"
evidence=TAS] [GO:0034329 "cell junction assembly" evidence=TAS]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0005829 GO:GO:0005886 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10
Reactome:REACT_111155 GO:GO:0034329 eggNOG:NOG263350 PDB:3IXE
PDBsum:3IXE HOVERGEN:HBG000053 InterPro:IPR017351 PIRSF:PIRSF038003
CTD:55679 OMA:ECFRCEL EMBL:AF484961 EMBL:AF520987 EMBL:AF527764
EMBL:AF527765 EMBL:AF527766 EMBL:AF527770 EMBL:AK022470
EMBL:BX458594 EMBL:AC010976 EMBL:AC074114 EMBL:BC065816
IPI:IPI00398576 IPI:IPI00815737 IPI:IPI00867554 IPI:IPI01015166
RefSeq:NP_001129509.2 RefSeq:NP_001154875.1 RefSeq:NP_001154876.1
RefSeq:NP_060450.2 UniGene:Hs.469881 ProteinModelPortal:Q7Z4I7
SMR:Q7Z4I7 MINT:MINT-1194006 STRING:Q7Z4I7 PhosphoSite:Q7Z4I7
DMDM:74750091 PaxDb:Q7Z4I7 PRIDE:Q7Z4I7 Ensembl:ENST00000324938
Ensembl:ENST00000355119 Ensembl:ENST00000409254
Ensembl:ENST00000409455 Ensembl:ENST00000409808
Ensembl:ENST00000410011 GeneID:55679 KEGG:hsa:55679 UCSC:uc002tov.3
UCSC:uc002tox.3 GeneCards:GC02M128395 HGNC:HGNC:16084 MIM:607908
neXtProt:NX_Q7Z4I7 PharmGKB:PA30390 EvolutionaryTrace:Q7Z4I7
GenomeRNAi:55679 NextBio:60464 ArrayExpress:Q7Z4I7 Bgee:Q7Z4I7
CleanEx:HS_LIMS2 Genevestigator:Q7Z4I7 GermOnline:ENSG00000072163
Uniprot:Q7Z4I7
Length = 341
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
C RC R P E ++ + +YH CFVC C +P +G F G+ +C DF+
Sbjct: 15 CQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEG-LFYEFEGRKYCEHDFQ 69
>UNIPROTKB|B4DQX7 [details] [associations]
symbol:ZYX "Zyxin, isoform CRA_a" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005925 "focal adhesion"
evidence=IDA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS50023
SMART:SM00132 GO:GO:0005737 GO:GO:0046872 GO:GO:0008270
GO:GO:0005925 Gene3D:2.10.110.10 EMBL:CH471198 EMBL:AC092214
HOGENOM:HOG000220910 HOVERGEN:HBG093602 UniGene:Hs.490415
HGNC:HGNC:13200 ChiTaRS:ZYX EMBL:AK299005 EMBL:AK316227
IPI:IPI00926316 SMR:B4DQX7 STRING:B4DQX7 Ensembl:ENST00000392910
Uniprot:B4DQX7
Length = 415
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKE 79
KC CG+ + + ++RA YH CF CV+C +PL+ G FI+ ++ + C D+ K+
Sbjct: 286 KCNTCGEPIT--DRMLRATGKAYHPHCFTCVVCARPLE-GTSFIVDQANRPHCVPDYHKQ 342
Query: 80 MYLMQQSSPSDDMM 93
Y + S S+ +M
Sbjct: 343 -YAPRCSVCSEPIM 355
>UNIPROTKB|C9JF46 [details] [associations]
symbol:LIMS1 "LIM and senescent cell
antigen-like-containing domain protein 1" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 EMBL:AC012487
OrthoDB:EOG4NP73S EMBL:AC010095 IPI:IPI00917739 HGNC:HGNC:6616
HOGENOM:HOG000253950 ChiTaRS:LIMS1 ProteinModelPortal:C9JF46
SMR:C9JF46 STRING:C9JF46 PRIDE:C9JF46 Ensembl:ENST00000428064
ArrayExpress:C9JF46 Bgee:C9JF46 Uniprot:C9JF46
Length = 177
Score = 104 (41.7 bits), Expect = 0.00075, P = 0.00075
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 17 LYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
L C RC P E ++ + +YH CFVC C Q +G F G+ +C DF
Sbjct: 17 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDF 75
Query: 77 E 77
+
Sbjct: 76 Q 76
>UNIPROTKB|E2R2S9 [details] [associations]
symbol:E2R2S9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
SUPFAM:SSF50156 GeneTree:ENSGT00700000104411 EMBL:AAEX03026550
Ensembl:ENSCAFT00000027308 OMA:KECFICA Uniprot:E2R2S9
Length = 441
Score = 112 (44.5 bits), Expect = 0.00076, P = 0.00076
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 8 VSCHPRGFRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS 67
+ C P Y CA+C ++ +M A +H+ CF C C P++K F +
Sbjct: 319 IFCPPCYDVRYAPSCAKCKKKITGE--IMHALKMTWHMHCFTCAACKTPIRK-RGFYMEE 375
Query: 68 GQLFCRQDFEK 78
G +C QD+EK
Sbjct: 376 GAPYCEQDYEK 386
>MGI|MGI:1921452 [details] [associations]
symbol:Fblim1 "filamin binding LIM protein 1" species:10090
"Mus musculus" [GO:0001725 "stress fiber" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0007155 "cell adhesion" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0016337 "cell-cell adhesion" evidence=ISO]
[GO:0030054 "cell junction" evidence=IEA] [GO:0031005 "filamin
binding" evidence=ISO] [GO:0033623 "regulation of integrin
activation" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 SMART:SM00132 MGI:MGI:1921452 GO:GO:0043231
GO:GO:0005938 GO:GO:0008360 GO:GO:0046872 GO:GO:0008270
GO:GO:0005925 Gene3D:2.10.110.10 GO:GO:0001725 GO:GO:0016337
GeneTree:ENSGT00610000085810 EMBL:CH466615 GO:GO:0031005 CTD:54751
eggNOG:NOG315774 HOGENOM:HOG000007533 HOVERGEN:HBG051561
OMA:NRLFCKP OrthoDB:EOG4PRSRD GO:GO:0033623 ChiTaRS:FBLIM1
EMBL:AF513359 EMBL:AK154680 EMBL:AK170151 EMBL:AK170440
EMBL:AL670446 EMBL:BC004777 IPI:IPI00114860 RefSeq:NP_001156728.1
RefSeq:NP_598515.3 UniGene:Mm.490327 ProteinModelPortal:Q71FD7
SMR:Q71FD7 STRING:Q71FD7 PhosphoSite:Q71FD7 PaxDb:Q71FD7
PRIDE:Q71FD7 Ensembl:ENSMUST00000006381 Ensembl:ENSMUST00000105784
Ensembl:ENSMUST00000105785 GeneID:74202 KEGG:mmu:74202
InParanoid:Q3TDK3 NextBio:340094 Bgee:Q71FD7 CleanEx:MM_FBLIM1
Genevestigator:Q71FD7 GermOnline:ENSMUSG00000006219 Uniprot:Q71FD7
Length = 375
Score = 111 (44.1 bits), Expect = 0.00076, P = 0.00076
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRS-GQLFCRQDFEKE 79
KC +CG+ + H V+RA +H PCF CV C + + E F L S Q++C DF ++
Sbjct: 244 KCGKCGEVVQEH--VIRALGKAFHPPCFTCVTCARCISD-ESFALDSQNQVYCVADFYRK 300
>RGD|628769 [details] [associations]
symbol:Pdlim7 "PDZ and LIM domain 7" species:10116 "Rattus
norvegicus" [GO:0001503 "ossification" evidence=IEA] [GO:0001725
"stress fiber" evidence=IEA;ISO] [GO:0001726 "ruffle"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005925 "focal
adhesion" evidence=IEA;ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=ISO]
[GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO]
[GO:0030054 "cell junction" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0045669 "positive regulation of
osteoblast differentiation" evidence=IDA] Pfam:PF00595 Pfam:PF00412
InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
RGD:628769 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10
GO:GO:0001725 GO:GO:0001726 GO:GO:0045669 SUPFAM:SSF50156
GO:GO:0001503 eggNOG:NOG286537 HOGENOM:HOG000220936
HOVERGEN:HBG051478 GeneTree:ENSGT00700000104411 CTD:9260
OMA:ATPTPMQ EMBL:AF095585 EMBL:BC078693 IPI:IPI00209358
RefSeq:NP_775148.1 UniGene:Rn.7274 ProteinModelPortal:Q9Z1Z9
SMR:Q9Z1Z9 STRING:Q9Z1Z9 PhosphoSite:Q9Z1Z9 PRIDE:Q9Z1Z9
Ensembl:ENSRNOT00000018899 GeneID:286908 KEGG:rno:286908
UCSC:RGD:628769 InParanoid:Q9Z1Z9 OrthoDB:EOG4XSKPZ NextBio:625011
ArrayExpress:Q9Z1Z9 Genevestigator:Q9Z1Z9
GermOnline:ENSRNOG00000013653 Uniprot:Q9Z1Z9
Length = 457
Score = 112 (44.5 bits), Expect = 0.00080, P = 0.00080
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
Y CA+C ++ +M A +H+PCF C C P+ + F + G +C +D+E
Sbjct: 337 YAPSCAKCKKKITGE--IMHALKMTWHVPCFTCAACKTPI-RNRAFYMEEGAPYCERDYE 393
Query: 78 K 78
K
Sbjct: 394 K 394
>ZFIN|ZDB-GENE-080219-41 [details] [associations]
symbol:ablim1a "actin binding LIM protein 1a"
species:7955 "Danio rerio" [GO:0003779 "actin binding"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001781 InterPro:IPR003128
Pfam:PF02209 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS51089
SMART:SM00132 SMART:SM00153 ZFIN:ZDB-GENE-080219-41 GO:GO:0007010
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.950.10 Gene3D:2.10.110.10
SUPFAM:SSF47050 GeneTree:ENSGT00700000104021 EMBL:BX957309
EMBL:CT025885 IPI:IPI00498122 Ensembl:ENSDART00000084416
ArrayExpress:F1Q5C0 Bgee:F1Q5C0 Uniprot:F1Q5C0
Length = 695
Score = 114 (45.2 bits), Expect = 0.00084, P = 0.00084
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 20 VKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVIC-CQPLQKGEQFILRSGQLFCRQDFEK 78
++CA+CG+ L E V+R Q+ +H+ CF C +C C Q G F +++G+ C D+++
Sbjct: 48 IRCAKCGE-LCKGE-VLRVQAKHFHIKCFTCKVCGCDLAQGG--FFMKNGEYLCTLDYQR 103
>UNIPROTKB|B4DQR8 [details] [associations]
symbol:ZYX "cDNA FLJ53160, highly similar to Zyxin"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005925
"focal adhesion" evidence=IDA] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS50023 SMART:SM00132 GO:GO:0005737 GO:GO:0046872
GO:GO:0008270 GO:GO:0005925 Gene3D:2.10.110.10 EMBL:AC092214
HOGENOM:HOG000220910 HOVERGEN:HBG093602 UniGene:Hs.490415
HGNC:HGNC:13200 ChiTaRS:ZYX EMBL:AK298925 IPI:IPI00871311
SMR:B4DQR8 STRING:B4DQR8 Ensembl:ENST00000449423 Uniprot:B4DQR8
Length = 485
Score = 112 (44.5 bits), Expect = 0.00088, P = 0.00088
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFIL-RSGQLFCRQDFEKE 79
KC CG+ + + ++RA YH CF CV+C +PL+ G FI+ ++ + C D+ K+
Sbjct: 356 KCNTCGEPIT--DRMLRATGKAYHPHCFTCVVCARPLE-GTSFIVDQANRPHCVPDYHKQ 412
Query: 80 MYLMQQSSPSDDMM 93
Y + S S+ +M
Sbjct: 413 -YAPRCSVCSEPIM 425
>UNIPROTKB|Q679P3 [details] [associations]
symbol:PDLIM7 "PDZ and LIM domain protein 7" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001503 "ossification" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0030018 "Z disc" evidence=IEA] Pfam:PF00595
Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132 SMART:SM00228
GO:GO:0007275 GO:GO:0030154 GO:GO:0030018 GO:GO:0005856
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156
GO:GO:0001503 HOVERGEN:HBG051478 CTD:9260 EMBL:AY376690
EMBL:AJ720300 IPI:IPI00581834 RefSeq:NP_001005345.2
UniGene:Gga.48638 ProteinModelPortal:Q679P3 SMR:Q679P3
GeneID:416362 KEGG:gga:416362 NextBio:20819830 Uniprot:Q679P3
Length = 416
Score = 111 (44.1 bits), Expect = 0.00090, P = 0.00090
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 18 YGVKCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFE 77
Y CA+C ++ VM A +H+ CF C C P+ + F + GQ +C +D+E
Sbjct: 296 YAPSCAKCKKKITGE--VMHALKMTWHVQCFTCAACKTPI-RNRAFYMEEGQPYCERDYE 352
Query: 78 K 78
K
Sbjct: 353 K 353
>DICTYBASE|DDB_G0293708 [details] [associations]
symbol:DDB_G0293708 "LIM-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
dictyBase:DDB_G0293708 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 EMBL:AAFI02000218 eggNOG:NOG236702
RefSeq:XP_629012.1 ProteinModelPortal:Q54BL7 SMR:Q54BL7
EnsemblProtists:DDB0233465 GeneID:8629297 KEGG:ddi:DDB_G0293708
InParanoid:Q54BL7 OMA:KFGSTEK Uniprot:Q54BL7
Length = 110
Score = 89 (36.4 bits), Expect = 0.00098, P = 0.00098
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
KC C + P E + A +YH CF C C L G+ +G LFC+ F+K
Sbjct: 9 KCIVCTKTVYPLEK-LAADEKIYHKSCFKCTECNSILSLGKYASKDNGTLFCKVCFKK 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.131 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 267 240 0.00093 113 3 11 22 0.40 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 236
No. of states in DFA: 585 (62 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 20.46u 0.10s 20.56t Elapsed: 00:00:15
Total cpu time: 20.49u 0.10s 20.59t Elapsed: 00:00:16
Start: Thu Aug 15 11:35:49 2013 End: Thu Aug 15 11:36:05 2013
WARNINGS ISSUED: 1