RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10849
(267 letters)
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 31
Score = 48.6 bits (116), Expect = 5e-09
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCF 48
C+ CG + E+VMRAQ +VYHL CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 31.5 bits (72), Expect = 0.006
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 15 FRLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCF 48
++ KC C +L E + A V+H CF
Sbjct: 4 LAMFSPKCGGCNRPVL--ENYLSAMDTVWHPECF 35
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 31.7 bits (72), Expect = 0.008
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRK 135
K + ++ Q + + FE
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPP 28
Score = 25.2 bits (55), Expect = 2.1
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 142 KRAKNILTPNQRRQFKSSFEISSMPCRK 169
K + + +Q + + FE
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPP 28
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 32.1 bits (73), Expect = 0.011
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 104 RRGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
R ++ R T Q + + F + R
Sbjct: 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRD 41
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 31.4 bits (71), Expect = 0.011
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRK 135
++ R + Q R+ + + + +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKD 29
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 31.4 bits (71), Expect = 0.015
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
R RT+L Q ++ + +P+P
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDAL 31
Score = 25.6 bits (56), Expect = 1.9
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 139 MNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGVH 173
M + R + +L Q ++ + + P +
Sbjct: 1 MKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQ 35
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 31.4 bits (71), Expect = 0.015
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 107 PKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM 139
P+R RT TS+Q + + F
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLAD 33
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 31.5 bits (71), Expect = 0.019
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 100 PRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQ 152
G P RT T+ Q + + F + R + + L Q
Sbjct: 20 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE--LNETQ 70
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 30.7 bits (69), Expect = 0.025
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRK------VSTMNSKRAKNILTPNQRRQFK 157
+R RT TS Q +Q +++F+ + P V T ++ + N+R +++
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 57
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 29.5 bits (66), Expect = 0.032
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPC 47
C RC P E ++ + +YH C
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQC 35
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 30.5 bits (69), Expect = 0.032
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRK 135
+R RT T Q + FE + P
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVF 29
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 29.7 bits (67), Expect = 0.032
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCF 48
KCA C +L + ++RA YH CF
Sbjct: 10 KCATCSQPIL--DRILRAMGKAYHPGCF 35
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 30.3 bits (68), Expect = 0.033
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 107 PKRPRTILTSAQRRQFKSSFEVSPKPCR 134
+R RT +++Q + + +FE + P
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDI 29
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.9 bits (65), Expect = 0.054
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 48 FVCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
FVC C Q F G+ +C DF+
Sbjct: 1 FVCAQCFQQFP-EGLFYEFEGRKYCEHDFQM 30
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 29.1 bits (65), Expect = 0.064
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 110 PRTILTSAQRRQFKSSFEVSPKPCRK 135
PR + T QRR + F+ + +P ++
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKE 26
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 29.1 bits (65), Expect = 0.074
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRKVSTM 139
++PRT T+AQ + F
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAE 32
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 29.2 bits (65), Expect = 0.10
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRK------VSTMNSKRAKNILTPNQRRQFKS 158
+ KR RT + + R ++ F PKP + K + N+R++ K
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
Query: 159 S 159
S
Sbjct: 66 S 66
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 28.7 bits (64), Expect = 0.14
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 108 KRPRTILTSAQRRQFKSSFEVSPKPCRK 135
++ R + + AQ + + F+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAP 30
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 28.5 bits (63), Expect = 0.20
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 105 RGPKRPRTILTSAQRRQFKSSFEVSPKPCRK 135
++ R + T AQ + + F
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAP 37
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 27.5 bits (61), Expect = 0.21
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCF 48
C RCG + E V+ +H CF
Sbjct: 17 GCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 27.6 bits (61), Expect = 0.24
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 109 RPRTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
+ RT ++ A + + F KP + K + N+R++ K
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 28.1 bits (62), Expect = 0.32
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 109 RPRTILTSAQRRQFKSSFEVSPKPCRK 135
R +S F + P
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEA 28
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 26.6 bits (59), Expect = 0.33
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 21 KCARCGDRLLPHEMVMRAQSHVYHLPCF 48
C C + P E + A V+H+ CF
Sbjct: 9 TCVECQKTVYPMER-LLANQQVFHISCF 35
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 27.0 bits (59), Expect = 0.55
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 107 PKRPRTILTSAQRRQFKSSF-EVSPKPCRK------VSTMNSKRAKNILTPNQRRQFKSS 159
R RT ++ +S +V P ++ K NQR K S
Sbjct: 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 25.9 bits (57), Expect = 0.68
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPCF 48
R KC C ++ + + + V+H CF
Sbjct: 5 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 26.0 bits (57), Expect = 0.78
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 111 RTILTSAQRRQFKSSFEVSPKPCRK 135
++ ++ R + F K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSK 25
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 25.5 bits (56), Expect = 0.90
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 16 RLYGVKCARCGDRLLPHEMVMRAQSHVYHLPC 47
RLYG +C C + V+ A YH C
Sbjct: 12 RLYGTRCFSCDQFIEGE--VVSALGKTYHPDC 41
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 25.9 bits (57), Expect = 1.1
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 111 RTILTSAQRRQFKSSFEVSPKPCRK 135
R T Q + + F + R+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRR 25
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 184
Score = 27.6 bits (61), Expect = 1.1
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 77 EKEMYLMQQSSPSDDMMLDENCRPRDGRRGPKRPRTILTSAQRRQFKSSFEVSPKPCRKV 136
E + S+ D+ P + I S +R+ F + + ++
Sbjct: 100 TSERQQLDFSTGKVRHPGDQRQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEI 159
Query: 137 STMNSKRAKNILTPNQRRQ 155
S+R K I P++++Q
Sbjct: 160 GGFVSQRIKVISKPSKKKQ 178
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 26.3 bits (58), Expect = 2.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 31 PHEMVMRAQSHVYHLPCFVCVIC 53
+V R ++H + LPC VI
Sbjct: 8 SPSLVKRQKTHFHDLPCGASVIL 30
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 24.7 bits (54), Expect = 2.8
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 108 KRPRTILTSAQRRQFKSSFE---VSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
K R +L +S P P T + N N RR+
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 25.1 bits (54), Expect = 3.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 111 RTILTSAQRRQFKSSFEVSPKPCRK 135
R A ++ ++E P ++
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKE 25
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 24.5 bits (53), Expect = 4.0
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 108 KRPRTILTSAQRRQFKSSFE---VSPKPCRK------VSTMNSKRAKNILTPNQRRQFK 157
+R R F +P P + + + N+R ++K
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.5 bits (51), Expect = 4.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 49 VCVICCQPLQKGEQFILRSGQLFCRQDFEK 78
VC C + L G++F R +C F
Sbjct: 1 VCTACRKQL-SGQRFTARDDFAYCLNCFCD 29
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 23.7 bits (51), Expect = 6.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 111 RTILTSAQRRQFKSSFEVSPKPCRKV------STMNSKRAKNILTPNQRRQFK 157
RT + + R + SF + KP + K + N+R++ K
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 25.2 bits (55), Expect = 7.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 158 SSFEISSMPCRKVGVHGHYLSLGMS 182
S + P + H HY+S G+S
Sbjct: 46 SMYRNVGSPSANIPEHWHYISFGLS 70
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 25.1 bits (54), Expect = 9.1
Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 117 AQRRQFKSSFEVSPKPCRKVSTMNSKRAKNILTPNQRRQFKSSFEISSMPCRKVGV---- 172
A +Q P + V+ R F+ +I +
Sbjct: 121 AGIQQIIKGLNEVLTPDQTVNIA--LETMAGKGTECGRSFEEIAKIIDGVKYNEKLSVCF 178
Query: 173 -HGHYLSLGMSLQDSSDSIFASSTKPLNPNHPYSPDDSYAMHSNDSFCSSDISLDESTNL 231
H G + ++ D + K + + +H NDS D N+
Sbjct: 179 DTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQ------VLHINDSKNVRGAGKDRHENI 232
Query: 232 DEG 234
G
Sbjct: 233 GFG 235
>d1okia1 b.11.1.1 (A:54-144) beta-Crystallin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 24.0 bits (52), Expect = 9.5
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 22 CARCGDRLLPHEMVMRAQSHVYHLPCFVCVICCQPLQKGEQFILRSGQLFCRQDF 76
C+ DR + + V Q +GE FIL G+ +
Sbjct: 26 CSNLADRGFDRVRSIIVSAGP-------WVAFEQSNFRGEMFILEKGEYPRWNTW 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.408
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,231
Number of extensions: 41846
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 51
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)