Query psy1085
Match_columns 254
No_of_seqs 145 out of 1128
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 100.0 2.6E-63 5.6E-68 447.9 15.9 220 28-247 8-237 (272)
2 PF01151 ELO: GNS1/SUR4 family 100.0 8.9E-62 1.9E-66 433.7 14.6 214 40-253 1-224 (250)
3 KOG3072|consensus 100.0 1.2E-60 2.7E-65 425.3 11.0 231 22-253 16-247 (282)
4 KOG3071|consensus 100.0 1.3E-51 2.8E-56 369.7 14.5 201 41-247 27-233 (274)
5 KOG3187|consensus 57.6 1E+02 0.0022 27.5 9.1 52 153-204 77-130 (223)
6 COG5548 Small integral membran 53.7 9.9 0.00021 29.4 1.9 33 41-73 50-82 (105)
7 PF05856 ARPC4: ARP2/3 complex 18.1 56 0.0012 27.8 0.8 20 145-164 103-127 (170)
8 PF06612 DUF1146: Protein of u 15.4 2.5E+02 0.0054 18.8 3.3 39 192-232 4-43 (48)
9 PF14826 FACT-Spt16_Nlob: FACT 14.8 74 0.0016 26.7 0.8 23 125-151 48-70 (163)
10 PLN02838 3-hydroxyacyl-CoA deh 14.6 6.9E+02 0.015 22.1 6.9 117 75-204 10-130 (221)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=2.6e-63 Score=447.95 Aligned_cols=220 Identities=34% Similarity=0.608 Sum_probs=192.1
Q ss_pred cccccCcchhhHhhhccchhHHHHHHHHHHHHHhhhhhhcC----CCCCc-chhHHHHHHHHHHHHHHHHhhhchhHHHH
Q psy1085 28 FEDKFQHLDTKTWMEKNWTIGFWYCGIYILVIFGGQHLMQN----RPRFT-LRKALIVWNTLLATFSIIGACRTAPELIH 102 (254)
Q Consensus 28 ~~~~~~~~~~~~w~~~~~~~~~~i~~~Yl~~V~~g~~~Mk~----Rkp~~-Lk~~l~~yN~~l~~~S~~~~~~~~~~~~~ 102 (254)
++.+||++|+++|+.+++.+++.++++|+++|+.||++||| |||++ ||+++++||++|+++|++++++.+++.++
T Consensus 8 ~~~~f~~~~~~~wl~~~~~~~~~i~~~Yl~~V~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~ 87 (272)
T PTZ00251 8 GINHYDGHAVQKWLASNVDICVYIAAAYLTFVFKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLN 87 (272)
T ss_pred ccccCCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998888888999999999999999999974 99999 99999999999999999999999998888
Q ss_pred HHHhcCccccccCCCCCC-CCchHHHHHHHHHhhcccccccccceeccCCCcceeeeeccchhhhhhhhhcccccccchh
Q psy1085 103 VLKNYGVYHSVCVPSFIE-DDKVAGFWTWMFALSKVPELGDTVFIILRKQPLIFLHWYHHITVLLYTWYAYKEYTSSARW 181 (254)
Q Consensus 103 ~~~~~g~~~~~C~~~~~~-~~~~~~~~~~~f~lsK~~El~DTvf~VLrKK~vsFLHvYHH~~~~~~~W~~~~~~~~~~~~ 181 (254)
..+++|+++..|+.++.. .++..++|+|+|++||++|++||+|+||||||+||||||||++|++++|.++....+.+.+
T Consensus 88 ~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKKqvsFLHvYHH~~~~~~~w~~~~~g~~~~~~ 167 (272)
T PTZ00251 88 NLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGKKLPFLSWFHHVTIFLYAWMSYQQGSSIWIC 167 (272)
T ss_pred HHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCchHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 888899999999854322 2456899999999999999999999999999999999999999999999987543222234
Q ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCC-chhhhhhhHHHHHHHHHHHHHHHHHHhhh---cCCCCcccchh
Q psy1085 182 FVVMNYCVHSLMYSYFALRAMGKRPP-KASAMMVTSLQILQMVIGSLVNIWSLQYI---NAGQPCKAFTI 247 (254)
Q Consensus 182 ~~~~Ns~VH~iMY~YY~l~a~g~~~~-~~~k~~IT~lQi~Qfv~~~~~~~~~~~~~---~~~~~C~~~~~ 247 (254)
++++|++||++||+||+++|+|+|.+ ++|||+||++||+||+++++++.++++.. ..+++|+++..
T Consensus 168 ~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~ 237 (272)
T PTZ00251 168 AAAMNYFVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTM 237 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchH
Confidence 68999999999999999999999743 55899999999999999999988887532 11357998773
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=8.9e-62 Score=433.72 Aligned_cols=214 Identities=39% Similarity=0.670 Sum_probs=188.8
Q ss_pred hhhccchhHHHHHHHHHHHHHhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCccccccCC---
Q psy1085 40 WMEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKALIVWNTLLATFSIIGACRTAPELIHVLKNYGVYHSVCVP--- 116 (254)
Q Consensus 40 w~~~~~~~~~~i~~~Yl~~V~~g~~~Mk~Rkp~~Lk~~l~~yN~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~--- 116 (254)
|+.+++.+++.++++|+++|+.||++||||||++||+++.+||++|+++|+++++++++++.+...++|+++..|++
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~ 80 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFVFLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDF 80 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC
Confidence 77778888999999999999999999999999999999999999999999999999998887777778999999943
Q ss_pred -CCCCCCchHHHHHHHHHhhcccccccccceeccCCCcceeeeeccchhhhhhhhhcccccccchhH-HHHhHHHHHHHH
Q psy1085 117 -SFIEDDKVAGFWTWMFALSKVPELGDTVFIILRKQPLIFLHWYHHITVLLYTWYAYKEYTSSARWF-VVMNYCVHSLMY 194 (254)
Q Consensus 117 -~~~~~~~~~~~~~~~f~lsK~~El~DTvf~VLrKK~vsFLHvYHH~~~~~~~W~~~~~~~~~~~~~-~~~Ns~VH~iMY 194 (254)
++...++.+++|.|+|++||++|++||+|+||||||+||||||||+++++++|.+++..++++.++ +++|++||++||
T Consensus 81 ~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY 160 (250)
T PF01151_consen 81 DPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKKQLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMY 160 (250)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHH
Confidence 222334568999999999999999999999999999999999999999999999999886666664 599999999999
Q ss_pred HHHHHHHhCCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHhhhcC-CCCccc---chhhhhhcc
Q psy1085 195 SYFALRAMGKR-PPKASAMMVTSLQILQMVIGSLVNIWSLQYINA-GQPCKA---FTIYCKLNM 253 (254)
Q Consensus 195 ~YY~l~a~g~~-~~~~~k~~IT~lQi~Qfv~~~~~~~~~~~~~~~-~~~C~~---~~~~~~~~~ 253 (254)
+||+++|+|.| .+++|||+||.+||+||+++++++.++++.... +++|++ +..+..++.
T Consensus 161 ~YY~l~a~g~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 224 (250)
T PF01151_consen 161 SYYFLSALGIRKVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGL 224 (250)
T ss_pred HHHHHHhcccccchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHH
Confidence 99999999987 677899999999999999999999888875433 357944 466666543
No 3
>KOG3072|consensus
Probab=100.00 E-value=1.2e-60 Score=425.29 Aligned_cols=231 Identities=45% Similarity=0.845 Sum_probs=216.6
Q ss_pred cccccccccccCcchhhHhhhccchhHHHHHHHHHHHHHhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhhchhHHH
Q psy1085 22 YSYMFNFEDKFQHLDTKTWMEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKALIVWNTLLATFSIIGACRTAPELI 101 (254)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~i~~~Yl~~V~~g~~~Mk~Rkp~~Lk~~l~~yN~~l~~~S~~~~~~~~~~~~ 101 (254)
....++++++|+++++..|+.++|+..+.++++|+++++.|+++|+|||||+|++++.+||.++++||+.+++++.++++
T Consensus 16 ~~~~~~~~~~F~~~~~~~~~~~~~~~si~is~~Y~v~if~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~ 95 (282)
T KOG3072|consen 16 VMISYVFETGFDSESVVKFFQEHWPLSIHISIAYLVLIFGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFL 95 (282)
T ss_pred eEEEEeecCCCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccccCCCCCCCCchHHHHHHHHHhhcccccccccceeccCCCcceeeeeccchhhhhhhhhcccccccchh
Q psy1085 102 HVLKNYGVYHSVCVPSFIEDDKVAGFWTWMFALSKVPELGDTVFIILRKQPLIFLHWYHHITVLLYTWYAYKEYTSSARW 181 (254)
Q Consensus 102 ~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~f~lsK~~El~DTvf~VLrKK~vsFLHvYHH~~~~~~~W~~~~~~~~~~~~ 181 (254)
..++.+|++++.|+..+.. .+..++|+|+|.+||..|++||+|+||||||++|||||||+++++++|+++....+.++|
T Consensus 96 ~~~~~~Gf~~s~C~~~~~~-~~~~~fW~~~fvlSK~~ElgDT~FiVLRKrPliFlHWYHHi~~~iy~~~~y~~~~a~~rw 174 (282)
T KOG3072|consen 96 AVFRAAGFKGSYCDANNLG-LSVSGFWSWLFVLSKAPELGDTIFIVLRKRPLIFLHWYHHILVLIYAWHSYIEKVAWGRW 174 (282)
T ss_pred HHHHhhhhheeeeecccCC-cchHHHHHHHHHHHhhhhhhceeEEEeccCccEEEechhhheeeeeeeeecccCCcCceE
Confidence 9999999999999998654 366899999999999999999999999999999999999999999999999999899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCC-Ccccchhhhhhcc
Q psy1085 182 FVVMNYCVHSLMYSYFALRAMGKRPPKASAMMVTSLQILQMVIGSLVNIWSLQYINAGQ-PCKAFTIYCKLNM 253 (254)
Q Consensus 182 ~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~k~~IT~lQi~Qfv~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~ 253 (254)
++.||.+||++||+||+++|+|.|+|++.++.||++||+||++++.+++.+++....++ +|+.+..+..+++
T Consensus 175 ~i~mNy~vHa~MY~YY~lrsl~ir~Pk~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~ 247 (282)
T KOG3072|consen 175 FIWMNYLVHAFMYSYYALRSLGIRLPKSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCF 247 (282)
T ss_pred EEEEehhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHH
Confidence 99999999999999999999999999999999999999999999999988877554433 3999999988764
No 4
>KOG3071|consensus
Probab=100.00 E-value=1.3e-51 Score=369.73 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=165.0
Q ss_pred hhccchhHHHHHHHHHHHHHhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCccccccCCCCCC
Q psy1085 41 MEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKALIVWNTLLATFSIIGACRTAPELIHVLKNYGVYHSVCVPSFIE 120 (254)
Q Consensus 41 ~~~~~~~~~~i~~~Yl~~V~~g~~~Mk~Rkp~~Lk~~l~~yN~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~ 120 (254)
++++++ +..++.+|++.+..||++|+||||++||+++.+||+.|++.|++++. +..........+++.-..|++.+..
T Consensus 27 l~s~~~-~~~il~~yl~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~-~~~~~~~~~~~y~l~c~~~~~~~~~ 104 (274)
T KOG3071|consen 27 LSSPWP-LLSILLAYLFVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFL-EGELWRWLKTAYNLRCQPCFPSDHE 104 (274)
T ss_pred ccCcHH-HHHHHHHHHHHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccceEEEecCCCCCC
Confidence 566654 88889999955678999999999999999999999999999998443 3333222222344444455555555
Q ss_pred CCchHHHHHHHHHhhcccccccccceeccC--CCcceeeeeccchhhhhhhhhcccccccch-hHHHHhHHHHHHHHHHH
Q psy1085 121 DDKVAGFWTWMFALSKVPELGDTVFIILRK--QPLIFLHWYHHITVLLYTWYAYKEYTSSAR-WFVVMNYCVHSLMYSYF 197 (254)
Q Consensus 121 ~~~~~~~~~~~f~lsK~~El~DTvf~VLrK--K~vsFLHvYHH~~~~~~~W~~~~~~~~~~~-~~~~~Ns~VH~iMY~YY 197 (254)
.+.+..+|+|+||+||+.||+||+|+|||| ||+||||+|||++|+..+|..+++.++|.. ..+.+|++||++||+||
T Consensus 105 ~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YY 184 (274)
T KOG3071|consen 105 PKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYY 184 (274)
T ss_pred cceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHH
Confidence 566789999999999999999999999999 589999999999999999999998864433 46899999999999999
Q ss_pred HHHHhCCCCCc--hhhhhhhHHHHHHHHHHHHHHHHH-HhhhcCCCCcccchh
Q psy1085 198 ALRAMGKRPPK--ASAMMVTSLQILQMVIGSLVNIWS-LQYINAGQPCKAFTI 247 (254)
Q Consensus 198 ~l~a~g~~~~~--~~k~~IT~lQi~Qfv~~~~~~~~~-~~~~~~~~~C~~~~~ 247 (254)
+++|+|+|+++ |||+++|.+|++||++..+++..+ ++ .++|..++.
T Consensus 185 flsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~----~~~c~~~~~ 233 (274)
T KOG3071|consen 185 FLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLF----KPGCCFGIG 233 (274)
T ss_pred HHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeee----cCCCCCchH
Confidence 99999999865 389999999999999988877766 33 247888877
No 5
>KOG3187|consensus
Probab=57.56 E-value=1e+02 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=37.5
Q ss_pred cceeeeeccchhhhhhhhhcccccccc--hhHHHHhHHHHHHHHHHHHHHHhCC
Q psy1085 153 LIFLHWYHHITVLLYTWYAYKEYTSSA--RWFVVMNYCVHSLMYSYFALRAMGK 204 (254)
Q Consensus 153 vsFLHvYHH~~~~~~~W~~~~~~~~~~--~~~~~~Ns~VH~iMY~YY~l~a~g~ 204 (254)
+++-|+-|-..++...-+..+...+.. .....+=+..-.+-|+||+++..|.
T Consensus 77 ~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~ 130 (223)
T KOG3187|consen 77 VTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV 130 (223)
T ss_pred eeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 788999988877655544444333222 2345688889999999999999987
No 6
>COG5548 Small integral membrane protein [Function unknown]
Probab=53.66 E-value=9.9 Score=29.39 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=22.3
Q ss_pred hhccchhHHHHHHHHHHHHHhhhhhhcCCCCCc
Q psy1085 41 MEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFT 73 (254)
Q Consensus 41 ~~~~~~~~~~i~~~Yl~~V~~g~~~Mk~Rkp~~ 73 (254)
+.+.|..-.+....=+.+++.++|.||.|||..
T Consensus 50 ~g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRKpvP 82 (105)
T COG5548 50 QGQTWGLILATVVSAALLVFFALRLVRSRKPVP 82 (105)
T ss_pred cCcccCeehHHHHHHHHHHhcchhccccCCCcc
Confidence 345565444444444566778999999999864
No 7
>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....
Probab=18.08 E-value=56 Score=27.84 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=15.5
Q ss_pred ceeccCCC-----cceeeeeccchh
Q psy1085 145 FIILRKQP-----LIFLHWYHHITV 164 (254)
Q Consensus 145 f~VLrKK~-----vsFLHvYHH~~~ 164 (254)
|.|||||| +|||=..+|.-.
T Consensus 103 F~ILRRkPv~GYDISFLIt~~h~e~ 127 (170)
T PF05856_consen 103 FFILRRKPVEGYDISFLITNFHTEQ 127 (170)
T ss_dssp STTB-SS--TTSSEEEEEECCHHHH
T ss_pred heeeeecCcCCCceeeeeechhhhh
Confidence 89999996 899998888754
No 8
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=15.42 E-value=2.5e+02 Score=18.76 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCchhh-hhhhHHHHHHHHHHHHHHHHH
Q psy1085 192 LMYSYFALRAMGKRPPKASA-MMVTSLQILQMVIGSLVNIWS 232 (254)
Q Consensus 192 iMY~YY~l~a~g~~~~~~~k-~~IT~lQi~Qfv~~~~~~~~~ 232 (254)
|.-+|+++++... -+..| +...+.|+....+.++.+..+
T Consensus 4 I~la~~aLq~l~~--ekf~k~~~~~q~~ll~vllsIalGylv 43 (48)
T PF06612_consen 4 IALAFWALQSLRW--EKFFKKPNVRQARLLIVLLSIALGYLV 43 (48)
T ss_pred HHHHHHHHHhcCH--HHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 3457889988843 33344 478899999998887776543
No 9
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=14.77 E-value=74 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcccccccccceeccCC
Q psy1085 125 AGFWTWMFALSKVPELGDTVFIILRKQ 151 (254)
Q Consensus 125 ~~~~~~~f~lsK~~El~DTvf~VLrKK 151 (254)
.+.=.|+|= +||-||++++.+++
T Consensus 48 ~aLq~WLlG----YEfpdTiiv~tk~~ 70 (163)
T PF14826_consen 48 TALQTWLLG----YEFPDTIIVFTKKK 70 (163)
T ss_dssp HHHHHHHHS----S--SSEEEEEETTE
T ss_pred HHHHHHHhc----ccHhhhhhhhcCCE
Confidence 555566653 59999999888763
No 10
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=14.61 E-value=6.9e+02 Score=22.08 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCccccccCCCCCCCCchHHHHHHHHHhhcccccccccceeccCCC-c
Q psy1085 75 RKALIVWNTLLATFSIIGACRTAPELIHVLKNYGVYHSVCVPSFIEDDKVAGFWTWMFALSKVPELGDTVFIILRKQP-L 153 (254)
Q Consensus 75 k~~l~~yN~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~f~lsK~~El~DTvf~VLrKK~-v 153 (254)
|.-+.+||++|++.=.++.+.++... ...| ++.. -...+...-++=..-+.|.+-..+=+-|-.. .
T Consensus 10 ~~YL~~YN~~~~~gW~~il~~~~~~~----~~~~-------~~~~--~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~ 76 (221)
T PLN02838 10 RLYLTVYNWVVFIGWAQVLYLAVTTL----KESG-------HEAV--YAAVERPLQLAQTAAVLEILHGLVGLVRSPVSA 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hccC-------cchH--HHHHHHHHHHHHHHHHHHHHHHHhccccCCcch
Confidence 45688999999885555544333222 1122 0000 0112222222222233565555555555553 6
Q ss_pred ceeeeeccchhhhhhhhhcccccccch--hHHHHhHHHHHHHHHHHHHHH-hCC
Q psy1085 154 IFLHWYHHITVLLYTWYAYKEYTSSAR--WFVVMNYCVHSLMYSYFALRA-MGK 204 (254)
Q Consensus 154 sFLHvYHH~~~~~~~W~~~~~~~~~~~--~~~~~Ns~VH~iMY~YY~l~a-~g~ 204 (254)
++++|.--..++...-........... .....=+..-+|-|+||++.. .|.
T Consensus 77 T~~QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~ 130 (221)
T PLN02838 77 TLPQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGF 130 (221)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 778887766655433333332221111 134667788999999998774 464
Done!