Query psy1085
Match_columns 254
No_of_seqs 145 out of 1128
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:02:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ijd_A Light-harvesting protei 33.6 9.5 0.00032 25.3 0.2 14 1-14 1-14 (53)
2 1nkz_A Light-harvesting protei 32.6 10 0.00034 25.2 0.1 14 1-14 1-14 (53)
3 1k8k_F P20, ARP2/3 complex 20 13.4 51 0.0018 26.8 0.6 21 143-163 99-124 (168)
4 3dwl_F Actin-related protein 2 12.2 64 0.0022 26.2 0.9 21 143-163 99-124 (168)
5 1d4b_A CIDE B, human cell deat 9.9 74 0.0025 24.6 0.4 21 141-161 95-121 (122)
6 1q90_A Apocytochrome F; membra 8.6 24 0.00082 30.9 -3.1 13 140-152 263-275 (292)
7 4b0f_A C4B-binding protein alp 8.2 1.6E+02 0.0054 20.2 1.5 29 59-87 17-46 (65)
8 3hi2_B Motility quorum-sensing 6.8 1.1E+02 0.0038 22.8 0.2 14 65-78 3-17 (101)
9 1vf5_C Cytochrome F; photosynt 5.4 1E+02 0.0035 26.9 -0.8 28 123-153 252-279 (289)
10 2l3i_A Aoxki4A, antimicrobial 5.0 2E+02 0.0068 16.2 0.5 9 203-211 1-9 (30)
No 1
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=33.61 E-value=9.5 Score=25.34 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=9.5
Q ss_pred CccccccccccCcc
Q psy1085 1 MQEESINTVVNPSI 14 (254)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (254)
|+.-|||+|++|+.
T Consensus 1 Mn~~kiWlVV~Ptv 14 (53)
T 1ijd_A 1 MNQGKIWTVVPPAF 14 (53)
T ss_dssp CTTGGGGGTSCHHH
T ss_pred CCCceEEEEECCcc
Confidence 56667777777764
No 2
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=32.62 E-value=10 Score=25.22 Aligned_cols=14 Identities=57% Similarity=0.767 Sum_probs=9.3
Q ss_pred CccccccccccCcc
Q psy1085 1 MQEESINTVVNPSI 14 (254)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (254)
|+.-|||+|++|+.
T Consensus 1 Mn~~kiWlVV~Ptv 14 (53)
T 1nkz_A 1 MNQGKIWTVVNPAI 14 (53)
T ss_dssp CCCTTGGGTSCHHH
T ss_pred CCCceEEEEECCcc
Confidence 56667777777653
No 3
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=13.41 E-value=51 Score=26.79 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=17.0
Q ss_pred ccceeccCCC-----cceeeeeccch
Q psy1085 143 TVFIILRKQP-----LIFLHWYHHIT 163 (254)
Q Consensus 143 Tvf~VLrKK~-----vsFLHvYHH~~ 163 (254)
--|.|||+|| +|||=..+|.-
T Consensus 99 e~f~ILRrkPv~GYDISFLItn~h~e 124 (168)
T 1k8k_F 99 ENFFILRRKPVEGYDISFLITNFHTE 124 (168)
T ss_dssp TTSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred cceEEeeeCCcCCccchhhhhhhhHH
Confidence 3588999996 79998888873
No 4
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=12.20 E-value=64 Score=26.17 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=16.9
Q ss_pred ccceeccCCC-----cceeeeeccch
Q psy1085 143 TVFIILRKQP-----LIFLHWYHHIT 163 (254)
Q Consensus 143 Tvf~VLrKK~-----vsFLHvYHH~~ 163 (254)
--|.|||+|| +|||=.-+|.-
T Consensus 99 e~f~ILRrkPv~GYDISFLItn~H~e 124 (168)
T 3dwl_F 99 ESFFILRRKPVQGYDISFLITNYHTE 124 (168)
T ss_dssp TTSTTBCSSCCTTCSEEEEEETTHHH
T ss_pred cceEEeeeCCcCCcceeeeehHHHHH
Confidence 4588999996 79998888874
No 5
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=9.86 E-value=74 Score=24.57 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=16.0
Q ss_pred ccccceeccCCC------cceeeeecc
Q psy1085 141 GDTVFIILRKQP------LIFLHWYHH 161 (254)
Q Consensus 141 ~DTvf~VLrKK~------vsFLHvYHH 161 (254)
=+|.|++|++.+ ..-||--||
T Consensus 95 ~nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEEEecCCCcccCCCcceeeeccC
Confidence 689999999973 566776555
No 6
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=8.60 E-value=24 Score=30.95 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.7
Q ss_pred cccccceeccCCC
Q psy1085 140 LGDTVFIILRKQP 152 (254)
Q Consensus 140 l~DTvf~VLrKK~ 152 (254)
++--+|+||||||
T Consensus 263 ~laQi~LVLKKKQ 275 (292)
T 1q90_A 263 LLTQVLLVLKKKQ 275 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhheeehhh
Confidence 3567899999996
No 7
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=8.21 E-value=1.6e+02 Score=20.18 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHhhhhhhcCC-CCCcchhHHHHHHHHHHH
Q psy1085 59 IFGGQHLMQNR-PRFTLRKALIVWNTLLAT 87 (254)
Q Consensus 59 V~~g~~~Mk~R-kp~~Lk~~l~~yN~~l~~ 87 (254)
|..|.++|+-- .|.+.|..+-+|-+.+=+
T Consensus 17 V~~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 17 VLTGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 45799999865 488999999999865543
No 8
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=6.80 E-value=1.1e+02 Score=22.78 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=9.3
Q ss_pred hhcCCCC-CcchhHH
Q psy1085 65 LMQNRPR-FTLRKAL 78 (254)
Q Consensus 65 ~Mk~Rkp-~~Lk~~l 78 (254)
-|++|+| ++|..+-
T Consensus 3 ~MEKrtPhy~L~~ik 17 (101)
T 3hi2_B 3 HMEKRTPHTRLSQVK 17 (101)
T ss_dssp -CEESSCSSCHHHHH
T ss_pred cCccCCCCCcHHHHH
Confidence 3888888 6776543
No 9
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=5.40 E-value=1e+02 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=16.9
Q ss_pred chHHHHHHHHHhhcccccccccceeccCCCc
Q psy1085 123 KVAGFWTWMFALSKVPELGDTVFIILRKQPL 153 (254)
Q Consensus 123 ~~~~~~~~~f~lsK~~El~DTvf~VLrKK~v 153 (254)
+....|.-+|..+= ++--+|+||||||+
T Consensus 252 p~Ri~gll~F~~~v---~laQi~LVLKKKQ~ 279 (289)
T 1vf5_C 252 PNRVKWMIAFICLV---MLAQLMLILKKKQV 279 (289)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHH---HHHHHhheeehhhh
Confidence 33334444444432 35678999999974
No 10
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=4.98 E-value=2e+02 Score=16.17 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=5.5
Q ss_pred CCCCCchhh
Q psy1085 203 GKRPPKASA 211 (254)
Q Consensus 203 g~~~~~~~k 211 (254)
|+|.|+.||
T Consensus 1 gircpkswk 9 (30)
T 2l3i_A 1 GIRCPKSWK 9 (30)
T ss_dssp CCCSSSCSC
T ss_pred CCCCCcchh
Confidence 566666663
Done!