Query psy1085
Match_columns 254
No_of_seqs 145 out of 1128
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 20:03:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1085.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1085hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 37.3 3.9 0.00029 23.6 0.3 13 141-153 18-30 (37)
2 d1ijda_ f.3.1.1 (A:) Light-har 26.7 6.1 0.00045 23.8 -0.1 14 1-14 1-14 (46)
3 d1q90a3 f.23.23.1 (A:248-292) 26.5 2.4 0.00018 25.6 -2.0 12 141-152 17-28 (45)
4 d1nkza_ f.3.1.1 (A:) Light-har 24.4 7.2 0.00052 24.2 -0.1 14 1-14 1-14 (53)
5 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 17.4 17 0.0012 27.7 0.6 21 144-164 99-124 (167)
6 d1d4ba_ d.15.2.1 (A:) Cell dea 9.6 36 0.0026 24.5 0.4 12 141-152 95-106 (122)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.6 2.6E+02 0.019 15.3 3.5 23 68-90 6-28 (37)
8 d1pd3a_ a.30.3.1 (A:) Nonstruc 4.3 1.9E+02 0.014 17.1 1.7 14 212-225 33-46 (54)
9 d2d8za2 g.39.1.3 (A:33-64) Fou 4.3 60 0.0044 17.8 -0.7 15 61-75 10-25 (32)
10 d1smye_ a.143.1.1 (E:) RNA pol 3.6 2.5E+02 0.018 18.5 2.0 17 27-43 49-66 (95)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=37.28 E-value=3.9 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.7
Q ss_pred ccccceeccCCCc
Q psy1085 141 GDTVFIILRKQPL 153 (254)
Q Consensus 141 ~DTvf~VLrKK~v 153 (254)
+--+++||||||+
T Consensus 18 laQi~lVlKKKQ~ 30 (37)
T d1vf5c3 18 LAQLMLILKKKQV 30 (37)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHH
Confidence 5667999999975
No 2
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=26.71 E-value=6.1 Score=23.83 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=9.3
Q ss_pred CccccccccccCcc
Q psy1085 1 MQEESINTVVNPSI 14 (254)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (254)
|...|||+|++|+.
T Consensus 1 Mn~gkiW~VV~Ptv 14 (46)
T d1ijda_ 1 MNQGKIWTVVPPAF 14 (46)
T ss_dssp CTTGGGGGTSCHHH
T ss_pred CCCceEEEEECCCc
Confidence 55667777777754
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.50 E-value=2.4 Score=25.57 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.1
Q ss_pred ccccceeccCCC
Q psy1085 141 GDTVFIILRKQP 152 (254)
Q Consensus 141 ~DTvf~VLrKK~ 152 (254)
+--+|+||||||
T Consensus 17 laQi~LVLKKKQ 28 (45)
T d1q90a3 17 LTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567899999996
No 4
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=24.38 E-value=7.2 Score=24.20 Aligned_cols=14 Identities=57% Similarity=0.767 Sum_probs=8.9
Q ss_pred CccccccccccCcc
Q psy1085 1 MQEESINTVVNPSI 14 (254)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (254)
|...|||+|++|+.
T Consensus 1 MnqgkiW~VV~PtV 14 (53)
T d1nkza_ 1 MNQGKIWTVVNPAI 14 (53)
T ss_dssp CCCTTGGGTSCHHH
T ss_pred CCCceEEEEECCCc
Confidence 45566777776654
No 5
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.36 E-value=17 Score=27.75 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=17.4
Q ss_pred cceeccCCC-----cceeeeeccchh
Q psy1085 144 VFIILRKQP-----LIFLHWYHHITV 164 (254)
Q Consensus 144 vf~VLrKK~-----vsFLHvYHH~~~ 164 (254)
-|.|||||| +|||=..+|.-.
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e~ 124 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTEQ 124 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHHh
Confidence 599999996 899988888753
No 6
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=36 Score=24.48 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=10.1
Q ss_pred ccccceeccCCC
Q psy1085 141 GDTVFIILRKQP 152 (254)
Q Consensus 141 ~DTvf~VLrKK~ 152 (254)
=||.|++|++.|
T Consensus 95 ~nT~lmvL~~gq 106 (122)
T d1d4ba_ 95 DDTCLMVLQSGQ 106 (122)
T ss_dssp SCCCCCEECSSC
T ss_pred CCCEEEEECCCC
Confidence 489999999963
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.56 E-value=2.6e+02 Score=15.28 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHH
Q psy1085 68 NRPRFTLRKALIVWNTLLATFSI 90 (254)
Q Consensus 68 ~Rkp~~Lk~~l~~yN~~l~~~S~ 90 (254)
|+.|.+|.+.-..|-+.++..-+
T Consensus 6 n~q~veLNrtsLy~GlLlifvl~ 28 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHH
Confidence 67899999999888887765433
No 8
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=4.30 E-value=1.9e+02 Score=17.08 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHH
Q psy1085 212 MMVTSLQILQMVIG 225 (254)
Q Consensus 212 ~~IT~lQi~Qfv~~ 225 (254)
.-||.+|-.|...-
T Consensus 33 eqitfmqalqllle 46 (54)
T d1pd3a_ 33 EQITFMQALQLLLE 46 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999998653
No 9
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.27 E-value=60 Score=17.79 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=10.4
Q ss_pred hhhhh-hcCCCCCcch
Q psy1085 61 GGQHL-MQNRPRFTLR 75 (254)
Q Consensus 61 ~g~~~-Mk~Rkp~~Lk 75 (254)
.|+|+ ||+-+|+-++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 46665 7888887654
No 10
>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus thermophilus [TaxId: 274]}
Probab=3.64 E-value=2.5e+02 Score=18.46 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=12.5
Q ss_pred ccccccCcchhhHh-hhc
Q psy1085 27 NFEDKFQHLDTKTW-MEK 43 (254)
Q Consensus 27 ~~~~~~~~~~~~~w-~~~ 43 (254)
..|-.++|+++..| |.+
T Consensus 49 tleg~~~dpN~vt~AMkE 66 (95)
T d1smye_ 49 TLEGLFDDPNAETWAMKE 66 (95)
T ss_dssp SSSGGGTSSCSHHHHHHH
T ss_pred cccccCCCCcHHHHHHHH
Confidence 35667888998888 554
Done!