RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1085
(254 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 180 bits (459), Expect = 2e-56
Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 7/208 (3%)
Query: 40 WMEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKALIVWNTLLATFSIIGACRTAPE 99
+ + +Y++ +F G +M+NR F L++ LIV N L S+ G
Sbjct: 1 PLLSSPWPVILIIVLYLVFVFLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLAG 60
Query: 100 LIHVLKNYG-VYHSVCVPSFIEDDKVAGFWTWMFALSKVPELGDTVFIILRK--QPLIFL 156
Y + + GFW W+F LSK EL DTVF++LRK + L FL
Sbjct: 61 AGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLF-LSKFLELLDTVFLVLRKKQRQLSFL 119
Query: 157 HWYHHITVLLYTWYAYKEYTSSARWF-VVMNYCVHSLMYSYFALRAMG-KRPPKASAMMV 214
H YHH T+LLY+W K WF ++N VH +MY Y+ L A+G + P +
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGARGLPVWWKKYI 179
Query: 215 TSLQILQMVIGSLVNIWSLQYINAGQPC 242
T LQI+Q V+G ++L Y C
Sbjct: 180 TQLQIIQFVLGLAHVGYAL-YNYTKGGC 206
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 146 bits (370), Expect = 5e-43
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 33 QHLD---TKTWMEKNWTIGFWYCGIYILVIFGGQHLMQ-----NRPRFTLRKALIVWNTL 84
H D + W+ N I + Y+ +F G L+ N P ++K +WN
Sbjct: 10 NHYDGHAVQKWLASNVDICVYIAAAYLTFVFKGPQLVDAIFHGNPPVPLIKKCWALWNIG 69
Query: 85 LATFSIIGACRTAPELIHVLKNYGVYHSVCVPSFIEDD----KVAGFWTWMFALSKVPEL 140
L+ FS+ G R P L++ L+ YG++ ++C +F ED+ KV G +F++SKVPE
Sbjct: 70 LSVFSMYGVYRVVPPLLNNLRKYGLHDTLC--TFREDEFYTGKV-GVAMGLFSISKVPEF 126
Query: 141 GDTVFIILRKQPLIFLHWYHHITVLLYTWYAYKEYTSSARWFVVMNYCVHSLMYSYFALR 200
GDT F+I+ + L FL W+HH+T+ LY W +Y++ +S MNY VHS+MY YFAL
Sbjct: 127 GDTFFLIMGGKKLPFLSWFHHVTIFLYAWMSYQQGSSIWICAAAMNYFVHSIMYFYFALS 186
Query: 201 AMG-KRPPKASAMMVTSLQILQMVIGSLVNIWSLQY 235
G K+ K AM +T LQI QMV G V+ + +
Sbjct: 187 EAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQ 222
>gnl|CDD|173862 cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 491
Score = 29.0 bits (66), Expect = 2.9
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 27/56 (48%)
Query: 23 SYMFNFEDKFQHLDTKTWMEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKAL 78
+ F+FE WM KN +F GQ R RF LRKAL
Sbjct: 296 ALAFDFE----------WMNKN--------------LFYGQ---YTRTRFNLRKAL 324
>gnl|CDD|220302 pfam09591, DUF2463, Protein of unknown function (DUF2463). This
protein is found in eukaryotic, parasitic microsporidia.
Its function is unknown.
Length = 210
Score = 28.2 bits (63), Expect = 4.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 68 NRPRFTLRKAL-IVWNTLLATFSIIGACRTAPELIHVLKNYGV--YHSVCVPSFI 119
++P L K L + N LL F+II I +N ++S+ +PSF
Sbjct: 48 HKPEGILHKILYYLLNLLLLAFAIISILSIIAFPIDKWENNDDPLFYSIILPSFF 102
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 27.7 bits (62), Expect = 6.1
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 85 LATFSIIGACRTAPELIHVLKNYGVYHSV 113
+ + IG LIHVL N G + SV
Sbjct: 255 MGGLATIGTQG-PANLIHVLFNNGAHDSV 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.138 0.461
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,046,054
Number of extensions: 1236743
Number of successful extensions: 1290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 23
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)