RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1085
(254 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 43/256 (16%), Positives = 74/256 (28%), Gaps = 106/256 (41%)
Query: 62 GQHLMQNRPRFTLRKALIVWNT----LLAT--FSIIGACRTAPELIHVL----------K 105
G L + + VWN T FSI+ P + + +
Sbjct: 1632 GMDLYKTSKAA--QD---VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 106 NYG--VYHS------VCVPSFIEDDKVAGFWTWMFALSKVPE--LGDTVFIILRKQPLIF 155
NY ++ + F E ++ + +T+ + + L T F QP +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-----RSEKGLLSATQF----TQPALT 1737
Query: 156 LHWYHHITVLLYTWYAYKEYTSSARWFVVMNYCV---HSL-MYSYFALRAMG-------- 203
L + + K ++ HSL Y+ AL ++
Sbjct: 1738 L-----MEKAA--FEDLKS------KGLIPADATFAGHSLGEYA--ALASLADVMSIESL 1782
Query: 204 -----KR-------PPKAS------AM-------MVTSL--QILQMVI-------GSLV- 228
R P+ M + S + LQ V+ G LV
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 229 ----NIWSLQYINAGQ 240
N+ + QY+ AG
Sbjct: 1843 IVNYNVENQQYVAAGD 1858
Score = 36.6 bits (84), Expect = 0.007
Identities = 20/123 (16%), Positives = 31/123 (25%), Gaps = 52/123 (42%)
Query: 67 QNRPRFTLRKALIVWNTLLATFSIIGACRTAPELIHVLKNYGVYHS---VCVPSFIEDDK 123
Q+R F+ RK F + +P +HS V I D
Sbjct: 404 QSRIPFSERKLKFSNR-----FLPV----ASP-----------FHSHLLVPASDLINKDL 443
Query: 124 VAGFWTWMFALSKVPELGDTVFII-----LRKQ---------PLIF---LHW-------Y 159
V ++ ++ V+ LR I + W
Sbjct: 444 VKNNVSF-----NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 160 HHI 162
HI
Sbjct: 499 THI 501
Score = 35.4 bits (81), Expect = 0.016
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 66/183 (36%)
Query: 56 ILVIFGGQHLMQNRPRFT-LRKALIVWNT---LLATFSIIGACRTAPELIHVLKNYGVYH 111
++ IFGGQ F LR ++ T L+ + + E + L
Sbjct: 156 LVAIFGGQG--NTDDYFEELRD---LYQTYHVLVGDL-----IKFSAETLSEL------- 198
Query: 112 SVCVPSFIEDDKV--AGF--WTWMFALSKVPELG--DTVFIILRKQPLIFLHWYHHITVL 165
+ + ++ +KV G W+ S P+ ++ I PLI +
Sbjct: 199 ---IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGV--------- 243
Query: 166 LYTWYAYKEYTSSARWFVVMNYCVHSLMYSYFALRAMGKRPPKASAMMVTSLQILQMVIG 225
A +Y V + +G P + + + + Q ++
Sbjct: 244 ----------IQLA------HYVV--------TAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 226 SLV 228
++
Sbjct: 280 AVA 282
Score = 27.3 bits (60), Expect = 6.4
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 189 VHSLMYSYFALRAMGKRP---PKASA 211
L+ +Y R M KRP SA
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSA 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.062
Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 96/267 (35%)
Query: 7 NTVVNPSIHSGMSANYSYM---FNFEDKFQHLDTKTWME---KNWTIGFWYCGIYILVIF 60
+V + + NY ++ E + + T+ ++E + + +F
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN---------QVF 126
Query: 61 GGQHLMQNRPRFTLRKAL--------IVWN-------TLLATFSIIGACRTAPELIHVLK 105
++ + +P LR+AL ++ + T +A + C + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA----LDVCLSYK--VQCKM 180
Query: 106 NYGVYHSVCVPSFIEDDKVAGFWTWM-FALSKVPELGDTVFIILRKQPLIFLHWYHHITV 164
++ ++ W+ PE ++ Q L + I
Sbjct: 181 DFKIF-------------------WLNLKNCNSPET-----VLEMLQKL-----LYQID- 210
Query: 165 LLYTWYAYKEYTSSARWFVVMNYCVHSLMYSYFALRAMGKRPPKASAMMVTSLQILQMVI 224
+TS + + +HS+ LR + K P + ++V
Sbjct: 211 --------PNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCLLV---------- 249
Query: 225 GSLVNIWSLQYINAGQPCKAFTIYCKL 251
L+N+ + + AF + CK+
Sbjct: 250 --LLNVQNAKAW------NAFNLSCKI 268
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A
{Sinorhizobium meliloti} PDB: 3szz_A 3t00_A 3t01_A
3t02_A
Length = 427
Score = 30.9 bits (69), Expect = 0.35
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 5 SINTVVNPSIHSGMSANYSYMFNFEDKFQHLDTKTWMEKNWTIGFWYCGIYILVIFGGQH 64
SI T P++H G+ NY Y + ++ D K F+ G + V+
Sbjct: 77 SIATGSPPAVH-GICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDK 135
Query: 65 L 65
L
Sbjct: 136 L 136
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas
fluorescens} SCOP: c.76.1.4
Length = 406
Score = 28.6 bits (63), Expect = 1.9
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 5 SINTVVNPSIHSGMSANYSYMFNFEDKFQHLDTKTWMEKNWTIGFWYCGIYILVIF 60
SI T PS+H G+ N+ + +++ D K G + V+
Sbjct: 69 SIVTGAPPSVH-GICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVT 123
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology,
protein structure initiati midwest center for
structural genomics; 1.90A {Klebsiella pneumoniae
subsp} PDB: 3qwt_A
Length = 382
Score = 28.1 bits (62), Expect = 2.9
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 3 EESINTVVNPSIHSGMSANYSYMFNFEDKFQHLDTKTWMEKNWTIGFWYCGIY 55
+ I V ++ + ++ +D +DTK W WT G GIY
Sbjct: 28 QALIRNVTQNLVNIK-DESGQFLLRLDDGRV-IDTKGWAGWEWTHGVGLYGIY 78
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 26.2 bits (58), Expect = 7.2
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 139 ELGDTVFIILRKQPLIFL-HWYHHITVLLYTWYA 171
ELG V PL F H Y +L+ ++
Sbjct: 82 ELGVHVQAD-NLFPLTFASHGYETFHLLMPLYFC 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.138 0.461
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,037,323
Number of extensions: 230669
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 22
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.9 bits)