RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1085
         (254 letters)



>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole
           ribonucleotide synthetase PurK (AIRC), C-domain
           {Escherichia coli [TaxId: 562]}
          Length = 79

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 22/64 (34%)

Query: 140 LGDTVFIILRKQPLIFLHWYH----------HITVLLYTW------------YAYKEYTS 177
           +G  V     K PL+ LHWY           H+ +                     EY S
Sbjct: 10  IGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYAS 69

Query: 178 SARW 181
              W
Sbjct: 70  GVIW 73


>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus
           thermophilus [TaxId: 274]}
          Length = 252

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 35  LDTKTWMEKNWTIGFWYCGIYILVIFGGQHLMQNRPRFTLRKALIV 80
           +  +   EK   +  +  G    V+    H+         +  L  
Sbjct: 144 VHAEATSEK-MALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQ 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.461 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,030,062
Number of extensions: 47474
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 12
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.0 bits)