Query psy10850
Match_columns 173
No_of_seqs 119 out of 636
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:03:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670|consensus 100.0 9.7E-54 2.1E-58 347.5 11.6 136 32-172 32-170 (212)
2 PTZ00040 translation initiatio 100.0 2.1E-49 4.5E-54 329.6 14.5 139 32-171 35-197 (233)
3 PF01652 IF4E: Eukaryotic init 100.0 1.2E-48 2.7E-53 308.8 14.3 134 36-171 1-138 (165)
4 KOG1669|consensus 100.0 4.8E-47 1E-51 301.8 8.6 140 31-172 26-165 (208)
5 COG5053 CDC33 Translation init 100.0 2.3E-40 5E-45 266.3 8.9 138 32-172 34-175 (217)
6 PF08939 DUF1917: Domain of un 79.1 7.3 0.00016 33.1 6.5 56 111-171 148-209 (243)
7 PF11525 CopK: Copper resistan 55.4 7.4 0.00016 27.1 1.4 21 86-107 10-30 (73)
8 PF08977 BOFC_N: Bypass of For 49.1 14 0.00031 24.1 1.9 30 67-99 21-50 (51)
9 PF10842 DUF2642: Protein of u 35.4 72 0.0016 21.8 3.8 41 124-164 7-50 (66)
10 PF06462 Hyd_WA: Propeller; I 33.2 35 0.00075 19.7 1.7 19 94-117 11-29 (32)
11 PHA00689 hypothetical protein 27.1 37 0.00081 22.3 1.2 13 104-120 29-41 (62)
12 KOG0080|consensus 25.5 1.1E+02 0.0024 25.1 3.9 36 131-166 26-67 (209)
13 COG3822 ABC-type sugar transpo 22.3 77 0.0017 26.5 2.4 27 94-120 91-123 (225)
14 KOG0098|consensus 21.6 1.5E+02 0.0032 24.8 4.0 36 131-166 21-62 (216)
No 1
>KOG1670|consensus
Probab=100.00 E-value=9.7e-54 Score=347.54 Aligned_cols=136 Identities=40% Similarity=0.818 Sum_probs=128.5
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR 111 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 111 (173)
...|||++.|||||...++. .+|++.|+.|.+|+|||+||++|++|++||+|+.+|+|++||+||+||||||+|+
T Consensus 32 ~~~hpL~~~WTlW~l~~d~~-----ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~ 106 (212)
T KOG1670|consen 32 HIKHPLQNNWTLWFLKNDRN-----KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANK 106 (212)
T ss_pred ccccccccceeEEeecCCcc-----ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCcccc
Confidence 35899999999999986553 2899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEec---CCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850 112 NGGKWLIRLR---KGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSL 172 (173)
Q Consensus 112 ~GG~~~i~~~---k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~ 172 (173)
+||||++.++ ++.+|.+|.++||++|||+|+++++|||+|+++|.+++||||||+++.|..
T Consensus 107 ~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~ 170 (212)
T KOG1670|consen 107 NGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEE 170 (212)
T ss_pred CCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchH
Confidence 9999999997 457999999999999999999999999999999999999999999999864
No 2
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=2.1e-49 Score=329.64 Aligned_cols=139 Identities=28% Similarity=0.576 Sum_probs=125.5
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccce---------------EEE
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFID---------------LHL 96 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~---------------~~l 96 (173)
...|||+++|||||+.+.. +.....+|.++|++|++|+|||+||++|+||++||+|+.+++ |||
T Consensus 35 ~~~hpL~~~Wt~W~~~~~~-~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l 113 (233)
T PTZ00040 35 STPLPLSYKWVIWEQVVKE-TIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI 113 (233)
T ss_pred CCCCcCCCcEEEEEEcCcc-cCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence 4579999999999987533 223567899999999999999999999999999999998874 999
Q ss_pred EecCCccccccCCCCCCcEEEEEecC-----CchHHHHHHHHHHHhcCCCCCCCceeeEEE----EeeCCCcEEEEecCC
Q psy10850 97 FKVGVKPMWEDEANRNGGKWLIRLRK-----GIASRCWENLILAMLGEQFMVGDEICGAVI----SVRFQEDHISVWNKT 167 (173)
Q Consensus 97 FK~gI~P~WEDp~N~~GG~~~i~~~k-----~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~----s~R~~~~~IsIW~~~ 167 (173)
||+||+||||||+|++||+|++++++ +.+|++|++|||++|||+|+.+++||||++ |+|++.++|+||+++
T Consensus 114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~ 193 (233)
T PTZ00040 114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN 193 (233)
T ss_pred ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence 99999999999999999999999954 468999999999999999998999999996 778889999999999
Q ss_pred CCCC
Q psy10850 168 SSLS 171 (173)
Q Consensus 168 ~~~~ 171 (173)
+++.
T Consensus 194 ~~d~ 197 (233)
T PTZ00040 194 LGDQ 197 (233)
T ss_pred CCCH
Confidence 9875
No 3
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=1.2e-48 Score=308.81 Aligned_cols=134 Identities=49% Similarity=0.955 Sum_probs=122.7
Q ss_pred CCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCCcE
Q psy10850 36 KLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGK 115 (173)
Q Consensus 36 pL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~GG~ 115 (173)
||+++|||||+.... ....++|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+
T Consensus 1 pL~~~Wt~w~~~~~~--~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~ 78 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQK--NSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGR 78 (165)
T ss_dssp EEEEEEEEEEEECCC--CCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEE
T ss_pred CcCCEEEEEEEecCC--CCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccE
Confidence 899999999995432 335689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC---chHHHHHHHHHHHhcCCCCCC-CceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 116 WLIRLRKG---IASRCWENLILAMLGEQFMVG-DEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 116 ~~i~~~k~---~~d~~W~~lll~~IGe~f~~~-~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
|++++++. .++++|++|||++|||+|+.. ++||||++|+|++.++|+||+++++++
T Consensus 79 ~~i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~ 138 (165)
T PF01652_consen 79 WIIRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDE 138 (165)
T ss_dssp EEEEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-H
T ss_pred EEEEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCH
Confidence 99999988 999999999999999999765 899999999999999999999998764
No 4
>KOG1669|consensus
Probab=100.00 E-value=4.8e-47 Score=301.75 Aligned_cols=140 Identities=60% Similarity=1.102 Sum_probs=133.8
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCC
Q psy10850 31 PPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEAN 110 (173)
Q Consensus 31 ~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N 110 (173)
....|||++..+|||..+.+|. ..++|++++++|++|.|||+||++|.|+++|+.|+...++||||+||+|+|||++|
T Consensus 26 ~d~dh~l~y~~t~~y~~r~~Gv--~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN 103 (208)
T KOG1669|consen 26 MDMDHPLQYVYTFWYERRTPGV--SKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKAN 103 (208)
T ss_pred CCCCCcceEEEEEEEEecCCCC--ChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCC
Confidence 3568999999999999887764 48899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850 111 RNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSL 172 (173)
Q Consensus 111 ~~GG~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~ 172 (173)
.|||+|+|+++|+.+.++||+||++++||+|..+|+|||+|+|+|.++++||||++++++-.
T Consensus 104 ~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta 165 (208)
T KOG1669|consen 104 CNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTA 165 (208)
T ss_pred CCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999998753
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-40 Score=266.25 Aligned_cols=138 Identities=30% Similarity=0.627 Sum_probs=125.6
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR 111 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 111 (173)
...|||+..|||||..++. ...+.|.+.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|+
T Consensus 34 ~~~hpl~~~wtlw~l~p~e---~g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~ 110 (217)
T COG5053 34 MNKHPLAFHWTLWFLKPPE---DGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM 110 (217)
T ss_pred hhcCccccceEEEEecCCc---cchhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence 4569999999999987554 2344599999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC---chHHHHHHHHHHHhcCCCC-CCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850 112 NGGKWLIRLRKG---IASRCWENLILAMLGEQFM-VGDEICGAVISVRFQEDHISVWNKTSSLSL 172 (173)
Q Consensus 112 ~GG~~~i~~~k~---~~d~~W~~lll~~IGe~f~-~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~ 172 (173)
+||+|.+.++.. .++++|...++++|||+++ .+.+|||+|++.|++.++|+||++++.|..
T Consensus 111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~d 175 (217)
T COG5053 111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKD 175 (217)
T ss_pred CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHH
Confidence 999999999753 4889999999999999995 577999999999999999999999988754
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=79.14 E-value=7.3 Score=33.08 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEe------eCCCcEEEEecCCCCCC
Q psy10850 111 RNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV------RFQEDHISVWNKTSSLS 171 (173)
Q Consensus 111 ~~GG~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~------R~~~~~IsIW~~~~~~~ 171 (173)
.-.|+|.|-+.++.+|.+|..+.-+++.+.+. +++-+|. ..+...|.|.|.|..|.
T Consensus 148 v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~ 209 (243)
T PF08939_consen 148 VTSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDR 209 (243)
T ss_dssp ---EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-H
T ss_pred cccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCH
Confidence 34899999999999999999999999976652 3444554 12346799999987663
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=55.44 E-value=7.4 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.2
Q ss_pred ccccccceEEEEecCCcccccc
Q psy10850 86 NEFQSFIDLHLFKVGVKPMWED 107 (173)
Q Consensus 86 s~l~~~~~~~lFK~gI~P~WED 107 (173)
-+|..++++|+||+|-.-| ||
T Consensus 10 i~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 10 IPLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EEBTTSEEEEEETTS-EEE-EE
T ss_pred EecCCCCEEEEEcCCceeh-hh
Confidence 4688999999999997654 55
No 8
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=49.11 E-value=14 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=22.1
Q ss_pred eeeccHHHHHHhhcCCCCCccccccceEEEEec
Q psy10850 67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKV 99 (173)
Q Consensus 67 ~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~ 99 (173)
.++-|.|+||+-|..-...++ ..++.+||+
T Consensus 21 Eti~s~ed~w~~Y~~WqLv~q---~~~~ivFrk 50 (51)
T PF08977_consen 21 ETIWSMEDFWAKYKGWQLVDQ---DDDQIVFRK 50 (51)
T ss_dssp EEEEEHHHHHHHSTTSEEEEE---ETTEEEEEE
T ss_pred eeeccHHHHHHhhcCcEEEEc---cCCEEEEEc
Confidence 579999999999997754333 345777775
No 9
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=35.42 E-value=72 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHhcCCC---CCCCceeeEEEEeeCCCcEEEEe
Q psy10850 124 IASRCWENLILAMLGEQF---MVGDEICGAVISVRFQEDHISVW 164 (173)
Q Consensus 124 ~~d~~W~~lll~~IGe~f---~~~~~I~Gvv~s~R~~~~~IsIW 164 (173)
..|-++-..+..+||..+ ...+.+-|+..+++++...|+.+
T Consensus 7 ~vdpyvyq~lq~liG~~vvV~T~~g~v~G~L~~V~pDhIvl~~~ 50 (66)
T PF10842_consen 7 LVDPYVYQTLQSLIGQRVVVQTTRGSVRGILVDVKPDHIVLEEN 50 (66)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEcCCcEEEEEEeecCCEEEEEeC
Confidence 467788899999999988 34568999999999999888876
No 10
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=33.23 E-value=35 Score=19.70 Aligned_cols=19 Identities=32% Similarity=0.788 Sum_probs=14.9
Q ss_pred EEEEecCCccccccCCCCCCcEEE
Q psy10850 94 LHLFKVGVKPMWEDEANRNGGKWL 117 (173)
Q Consensus 94 ~~lFK~gI~P~WEDp~N~~GG~~~ 117 (173)
-.+||.||.| .|..|-.|.
T Consensus 11 ~v~~R~Gis~-----~~P~G~~W~ 29 (32)
T PF06462_consen 11 SVYFRTGISP-----SNPEGTSWE 29 (32)
T ss_pred CEEEECcCCC-----CCCCCCCcE
Confidence 4679999998 577787775
No 11
>PHA00689 hypothetical protein
Probab=27.06 E-value=37 Score=22.25 Aligned_cols=13 Identities=46% Similarity=1.324 Sum_probs=10.6
Q ss_pred ccccCCCCCCcEEEEEe
Q psy10850 104 MWEDEANRNGGKWLIRL 120 (173)
Q Consensus 104 ~WEDp~N~~GG~~~i~~ 120 (173)
-||| +||.|++.-
T Consensus 29 rwed----dggewvlme 41 (62)
T PHA00689 29 RWED----DGGEWVLME 41 (62)
T ss_pred eeec----CCCcEEEEe
Confidence 4998 699999863
No 12
>KOG0080|consensus
Probab=25.53 E-value=1.1e+02 Score=25.08 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCC-CceeeEEE-----EeeCCCcEEEEecC
Q psy10850 131 NLILAMLGEQFMVG-DEICGAVI-----SVRFQEDHISVWNK 166 (173)
Q Consensus 131 ~lll~~IGe~f~~~-~~I~Gvv~-----s~R~~~~~IsIW~~ 166 (173)
.|+|.++...|+.. .--.|+-+ +++.+..+++||-.
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDT 67 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDT 67 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEec
Confidence 57899999999543 33478875 56778899999964
No 13
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=22.33 E-value=77 Score=26.46 Aligned_cols=27 Identities=44% Similarity=0.836 Sum_probs=22.6
Q ss_pred EEEEecCCccc---c---ccCCCCCCcEEEEEe
Q psy10850 94 LHLFKVGVKPM---W---EDEANRNGGKWLIRL 120 (173)
Q Consensus 94 ~~lFK~gI~P~---W---EDp~N~~GG~~~i~~ 120 (173)
.++++..+.|| | ||--|++||.+++++
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el 123 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVEL 123 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEE
Confidence 56677778887 3 888999999999998
No 14
>KOG0098|consensus
Probab=21.58 E-value=1.5e+02 Score=24.81 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=27.6
Q ss_pred HHHHHHhcCCC-CCCCceeeEE-----EEeeCCCcEEEEecC
Q psy10850 131 NLILAMLGEQF-MVGDEICGAV-----ISVRFQEDHISVWNK 166 (173)
Q Consensus 131 ~lll~~IGe~f-~~~~~I~Gvv-----~s~R~~~~~IsIW~~ 166 (173)
.|++-+....| +..+.-.||. ++++.+.+++.||-.
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDt 62 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDT 62 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEec
Confidence 46778888888 4556677776 577889999999964
Done!