Query psy10850
Match_columns 173
No_of_seqs 119 out of 636
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:04:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgb_A Eukaryotic translation 100.0 4.7E-55 1.6E-59 354.7 16.4 143 29-171 9-151 (195)
2 2idr_A Eukaryotic translation 100.0 9.2E-55 3.1E-59 348.3 13.4 136 34-171 1-136 (177)
3 1l8b_A Eukaryotic translation 100.0 6.9E-53 2.4E-57 340.7 13.8 135 32-171 7-146 (190)
4 3hxi_A Eukaryotic translation 100.0 3.6E-53 1.2E-57 342.4 11.0 140 27-171 2-145 (189)
5 1ipb_A Eukaryotic translation 100.0 1.5E-52 5.2E-57 345.0 13.7 135 32-171 34-173 (217)
6 3m94_A Translation initiation 100.0 2.3E-52 7.9E-57 337.6 14.1 133 34-171 2-139 (189)
7 1ap8_A Translation initiation 100.0 1.1E-51 3.7E-56 339.1 16.9 134 32-168 34-170 (213)
8 4axg_A Eukaryotic translation 100.0 1.3E-49 4.5E-54 333.2 15.0 137 30-171 65-204 (248)
9 1ztp_A Basophilic leukemia exp 98.7 1.8E-08 6.2E-13 83.9 6.7 58 108-171 121-182 (251)
10 2k0q_A Putative uncharacterize 53.1 5.5 0.00019 26.8 1.4 21 86-107 10-30 (74)
11 1nrp_R Receptor based peptide 33.9 13 0.00045 19.7 0.7 12 99-110 13-24 (26)
12 1nro_R Receptor based peptide 29.0 16 0.00055 19.5 0.6 11 99-109 13-23 (27)
No 1
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=4.7e-55 Score=354.72 Aligned_cols=143 Identities=70% Similarity=1.264 Sum_probs=134.8
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccC
Q psy10850 29 TIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDE 108 (173)
Q Consensus 29 ~~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp 108 (173)
..++..|||+++|||||+.+.+++.....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||
T Consensus 9 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~ 88 (195)
T 2jgb_A 9 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDD 88 (195)
T ss_dssp CCCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTST
T ss_pred cCCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCC
Confidence 34568899999999999987655555678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 109 ANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 109 ~N~~GG~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
+|++||+|+|+++|+.+|++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++.
T Consensus 89 ~N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~ 151 (195)
T 2jgb_A 89 ANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQ 151 (195)
T ss_dssp TTTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCH
T ss_pred CCCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 2
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=9.2e-55 Score=348.26 Aligned_cols=136 Identities=35% Similarity=0.781 Sum_probs=129.1
Q ss_pred CCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCC
Q psy10850 34 HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNG 113 (173)
Q Consensus 34 ~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~G 113 (173)
.|||+++|||||+.+.. +....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|
T Consensus 1 ~HpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~G 78 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQG--KSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANG 78 (177)
T ss_dssp CCEEEEEEEEEEECTTC--SSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTC
T ss_pred CCCCCCeEEEEEEcCCC--CCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCC
Confidence 59999999999997543 2457799999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 114 GKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 114 G~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
|+|+++++|+.+|++|++|||++|||+|+.+++|||||+|+|+++++|+||+++++++
T Consensus 79 G~w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~ 136 (177)
T 2idr_A 79 GKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANE 136 (177)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCH
T ss_pred CEEEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCH
Confidence 9999999999999999999999999999888999999999999999999999999764
No 3
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=6.9e-53 Score=340.70 Aligned_cols=135 Identities=38% Similarity=0.823 Sum_probs=125.1
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR 111 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 111 (173)
...|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|+
T Consensus 7 ~~~hpL~~~Wt~W~~~~~~-----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~ 81 (190)
T 1l8b_A 7 YIKHPLQNRWALWFFKNDK-----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK 81 (190)
T ss_dssp --CCEEEEEEEEEEEECCS-----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTT
T ss_pred cccCCCCCeEEEEEEcCCC-----ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCC
Confidence 4689999999999997643 45799999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCc----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 112 NGGKWLIRLRKGI----ASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 112 ~GG~~~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
+||+|++++++.. +|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus 82 ~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~ 146 (190)
T 1l8b_A 82 RGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENR 146 (190)
T ss_dssp TCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCH
T ss_pred CCCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCH
Confidence 9999999998754 59999999999999999 668899999999999999999999998864
No 4
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=3.6e-53 Score=342.35 Aligned_cols=140 Identities=32% Similarity=0.679 Sum_probs=127.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccc
Q psy10850 27 PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWE 106 (173)
Q Consensus 27 ~~~~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WE 106 (173)
|...+...|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++||||++|++|+.+++|||||+||+||||
T Consensus 2 ~~~~~~~~HpL~~~Wt~W~~~~~~-----~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WE 76 (189)
T 3hxi_A 2 PLGSPEFPHPLQDSWSYYLFQFRK-----ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWE 76 (189)
T ss_dssp -----CCCCEEEEEEEEEEECCCT-----TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTT
T ss_pred CCCCCCccCCCCCeEEEEEECCCC-----ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCC
Confidence 345567889999999999997543 358999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEecCC-chHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 107 DEANRNGGKWLIRLRKG-IASRCWENLILAMLGEQF-MVGDE--ICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 107 Dp~N~~GG~~~i~~~k~-~~d~~W~~lll~~IGe~f-~~~~~--I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
||+|++||+|+|+++|. .+|++|++|||++|||+| +.+++ |||||+|+|+++++|+||++++++.
T Consensus 77 D~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~ 145 (189)
T 3hxi_A 77 DPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEE 145 (189)
T ss_dssp SHHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCH
T ss_pred CcCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCH
Confidence 99999999999999987 699999999999999999 66677 9999999999999999999999864
No 5
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=1.5e-52 Score=344.97 Aligned_cols=135 Identities=38% Similarity=0.824 Sum_probs=126.3
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR 111 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 111 (173)
...|||+++|||||+.+. ...+|+++|++|++|+|||+||++||||++|++|+.+++|||||+||+||||||+|+
T Consensus 34 ~~~hpL~~~Wt~W~~~~~-----~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~ 108 (217)
T 1ipb_A 34 YIKHPLQNRWALWFFKND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK 108 (217)
T ss_dssp TSCCEEEEEEEEEEECCC-----TTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTT
T ss_pred ccCCCCCCeEEEEEEeCC-----cccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCC
Confidence 357999999999999754 256899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCc----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 112 NGGKWLIRLRKGI----ASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 112 ~GG~~~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
+||+|+|+++|.. +|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus 109 ~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~ 173 (217)
T 1ipb_A 109 RGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENR 173 (217)
T ss_dssp TCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCH
T ss_pred CCCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCH
Confidence 9999999998864 59999999999999999 778899999999999999999999999764
No 6
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=2.3e-52 Score=337.62 Aligned_cols=133 Identities=39% Similarity=0.825 Sum_probs=124.6
Q ss_pred CCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCC
Q psy10850 34 HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNG 113 (173)
Q Consensus 34 ~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~G 113 (173)
.|||+++|||||+..+ ...+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|
T Consensus 2 ~HpL~~~Wt~W~~~~~-----~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~G 76 (189)
T 3m94_A 2 RHPLQCHWALWYLKAD-----RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKG 76 (189)
T ss_dssp CCEEEEEEEEEEECCC-----SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTC
T ss_pred CCCCCCcEEEEEECCC-----CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCC
Confidence 6999999999998643 34689999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCC----chHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 114 GKWLIRLRKG----IASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 114 G~~~i~~~k~----~~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
|+|+|+++|. .+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus 77 Gkw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~ 139 (189)
T 3m94_A 77 GRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKD 139 (189)
T ss_dssp EEEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCH
T ss_pred CEEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCH
Confidence 9999999764 579999999999999999 468999999999999999999999998864
No 7
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=1.1e-51 Score=339.11 Aligned_cols=134 Identities=34% Similarity=0.704 Sum_probs=125.1
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850 32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR 111 (173)
Q Consensus 32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~ 111 (173)
...|||+++|||||+.+.. ....+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 34 ~~~hpL~~~Wt~W~~~~~~---~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~ 110 (213)
T 1ap8_A 34 DVKHPLNTKWTLWYTKPAV---DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA 110 (213)
T ss_dssp CCSSEEEEEEEEEEECCCG---GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred CCccccCCcEEEEEEcCCc---ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence 4789999999999997643 3456899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEec--CCchHHHHHHHHHHHhcCCCCCCC-ceeeEEEEeeCCCcEEEEecCCC
Q psy10850 112 NGGKWLIRLR--KGIASRCWENLILAMLGEQFMVGD-EICGAVISVRFQEDHISVWNKTS 168 (173)
Q Consensus 112 ~GG~~~i~~~--k~~~d~~W~~lll~~IGe~f~~~~-~I~Gvv~s~R~~~~~IsIW~~~~ 168 (173)
+||||+|+++ ++.+|++|++|||++|||+|+..+ +|||||+|+|++.++|+||++++
T Consensus 111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~ 170 (213)
T 1ap8_A 111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE 170 (213)
T ss_dssp TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC
Confidence 9999999983 458999999999999999997766 99999999999999999999998
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-49 Score=333.18 Aligned_cols=137 Identities=36% Similarity=0.748 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCC
Q psy10850 30 IPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEA 109 (173)
Q Consensus 30 ~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~ 109 (173)
.....|||+++|||||+.+.. ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||+
T Consensus 65 ~~~~kHpL~~~WtlW~~~~~~-----~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~ 139 (248)
T 4axg_A 65 EHLYKHPLMNVWTLWYLENDR-----SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAA 139 (248)
T ss_dssp -CCCCCEEEEEEEEEEESCSC-----CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTT
T ss_pred ccccCCCCCCeEEEEEeeCCC-----ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCcc
Confidence 335679999999999986543 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCC---chHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850 110 NRNGGKWLIRLRKG---IASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS 171 (173)
Q Consensus 110 N~~GG~~~i~~~k~---~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~ 171 (173)
|++||+|+|++.|. .+|++|++|+|++|||+|+.+++||||++|+|++.++|+||++++++.
T Consensus 140 N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~ 204 (248)
T 4axg_A 140 NKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNE 204 (248)
T ss_dssp TTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCH
T ss_pred CCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCH
Confidence 99999999999765 468999999999999999988999999999999999999999998874
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=98.71 E-value=1.8e-08 Score=83.94 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEEecC-CchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCC---CcEEEEecCCCCCC
Q psy10850 108 EANRNGGKWLIRLRK-GIASRCWENLILAMLGEQFMVGDEICGAVISVRFQ---EDHISVWNKTSSLS 171 (173)
Q Consensus 108 p~N~~GG~~~i~~~k-~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~---~~~IsIW~~~~~~~ 171 (173)
+.|..||||.|.+.+ ..+|.+|+++++++|+++ +||++||+|.. .++|+|||++..|.
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~ 182 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDR 182 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCH
Confidence 469999999999988 789999999999999654 59999999986 89999999998874
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=53.06 E-value=5.5 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=16.6
Q ss_pred ccccccceEEEEecCCcccccc
Q psy10850 86 NEFQSFIDLHLFKVGVKPMWED 107 (173)
Q Consensus 86 s~l~~~~~~~lFK~gI~P~WED 107 (173)
-+|..++++|+||+|-.-| ||
T Consensus 10 v~LkDGstvyiFKDGKMam-Ed 30 (74)
T 2k0q_A 10 YDLQDGSKVHVFKDGKMGM-EN 30 (74)
T ss_dssp EEBTTSCEEEEETTSCEEE-EC
T ss_pred EecCCCcEEEEEcCCceeh-hh
Confidence 4688999999999996543 44
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=33.89 E-value=13 Score=19.70 Aligned_cols=12 Identities=42% Similarity=0.864 Sum_probs=9.1
Q ss_pred cCCccccccCCC
Q psy10850 99 VGVKPMWEDEAN 110 (173)
Q Consensus 99 ~gI~P~WEDp~N 110 (173)
+..+|-|||.+.
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 456899999764
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=29.02 E-value=16 Score=19.49 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=8.5
Q ss_pred cCCccccccCC
Q psy10850 99 VGVKPMWEDEA 109 (173)
Q Consensus 99 ~gI~P~WEDp~ 109 (173)
+..+|-|||.+
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 45689999965
Done!