RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10850
         (173 letters)



>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 182

 Score =  136 bits (344), Expect = 6e-42
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 10/140 (7%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +      D 
Sbjct: 2   HPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 56

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MVGDEICG 149
            LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F    D++CG
Sbjct: 57  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 116

Query: 150 AVISVRFQEDHISVWNKTSS 169
           AV++VR + D I++W     
Sbjct: 117 AVVNVRAKGDKIAIWTTECE 136


>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 213

 Score =  129 bits (326), Expect = 7e-39
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L  ++  WY++    K  S   + D L+ +  F +VE+FW I  ++  P+E     D 
Sbjct: 37  HPLNTKWTLWYTKPAVDKSES---WSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL--RKGIASRCWENLILAMLGEQFMVG-DEICGAV 151
           H+F+  V+P WEDEAN  GGKW  +L  +       W   +LA++GE       +I G V
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153

Query: 152 ISVRFQEDHISVWNKTSS 169
           +S+R   +  ++W K+  
Sbjct: 154 LSIRKGGNKFALWTKSED 171


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.6 bits (54), Expect = 3.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 139 EQFMVGDEICGAVISVRFQEDHISVW 164
           E +++ D++    I VRF ED  + W
Sbjct: 19  EVYLLCDKVQKDDIEVRFYEDDENGW 44


>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
           O157:H7 [TaxId: 83334]}
          Length = 337

 Score = 24.7 bits (54), Expect = 7.0
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 44  WYSRR--TPGKVTSVQSYDDNLKLI-QKFGSVE 73
           W +R+  + G VTS++ +  +   I Q +G   
Sbjct: 287 WVTRKPTSDGYVTSLELFAHDGTQIAQLYGQRT 319


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,012
Number of extensions: 32217
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 14
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)