BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10851
(159 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307204532|gb|EFN83212.1| LIM homeobox transcription factor 1 beta [Harpegnathos saltator]
Length = 402
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 227 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 283
Query: 96 GESEWVSLDWR 106
+L+ R
Sbjct: 284 HSHYLNALNMR 294
>gi|332025158|gb|EGI65338.1| LIM homeobox transcription factor 1-beta [Acromyrmex echinatior]
Length = 400
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 225 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 281
Query: 96 GESEWVSLDWR 106
+L+ R
Sbjct: 282 HSHYLNALNMR 292
>gi|307189897|gb|EFN74141.1| LIM homeobox transcription factor 1 beta [Camponotus floridanus]
Length = 402
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 227 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 283
Query: 96 GESEWVSLDWR 106
+L+ R
Sbjct: 284 HSHYLNALNMR 294
>gi|383861320|ref|XP_003706134.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Megachile
rotundata]
Length = 402
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 226 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 282
Query: 96 GESEWVSLDWR 106
+++ R
Sbjct: 283 HSHYLNAMNMR 293
>gi|328779726|ref|XP_001120677.2| PREDICTED: LIM homeobox transcription factor 1-beta-like [Apis
mellifera]
Length = 402
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 226 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 282
Query: 96 GESEWVSLDWR 106
+++ R
Sbjct: 283 HSHYLNAMNMR 293
>gi|380030211|ref|XP_003698747.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta-like [Apis florea]
Length = 402
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 226 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 282
Query: 96 GESEWVSLDWR 106
+++ R
Sbjct: 283 HSHYLNAMNMR 293
>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
Length = 389
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAK+TGLSVRVVQVWFQNQRAK+KKIQRKAKQ++ DK LDK+ E IK E
Sbjct: 200 KVREALAKETGLSVRVVQVWFQNQRAKVKKIQRKAKQEQ-DKGLDKDKDEKSIKVESPDS 258
Query: 96 GESEWVSL 103
+ ++ L
Sbjct: 259 DQVHYLGL 266
>gi|156543668|ref|XP_001605174.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Nasonia
vitripennis]
Length = 419
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAKDTGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 236 KVREALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERKPESPHSD 292
Query: 96 GESEWVSLDWR 106
S +++ R
Sbjct: 293 -HSHYMNAMMR 302
>gi|195440764|ref|XP_002068210.1| GK10148 [Drosophila willistoni]
gi|194164295|gb|EDW79196.1| GK10148 [Drosophila willistoni]
Length = 636
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/110 (50%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 423 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 479
Query: 69 KAKQQEG--------------DKSLDKEDSEPHIKQEPHSEGESEWVSLD 104
KAKQ G D E E IKQE +E S LD
Sbjct: 480 KAKQNGGTTTNGRGNGNSNAADDKDTNEKEEKSIKQELGTESGSYLGGLD 529
>gi|350402518|ref|XP_003486514.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
impatiens]
Length = 402
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAK+TGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 226 KVREALAKETGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 282
Query: 96 GESEWVSLDWR 106
+++ R
Sbjct: 283 HSHYLNAMNMR 293
>gi|340711972|ref|XP_003394539.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
terrestris]
Length = 402
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VREALAK+TGLSVRVVQVWFQNQRAKMKK+QRKAK + G DKE E + PHS+
Sbjct: 226 KVREALAKETGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGS---DKEPKEERRTESPHSD 282
Query: 96 GESEWVSLDWR 106
+++ R
Sbjct: 283 HSHYLNAMNMR 293
>gi|242007292|ref|XP_002424475.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
gi|212507893|gb|EEB11737.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
Length = 396
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDK-EDSEPHIKQEPHS 94
+VREALAKDTGLSVR+VQVWFQNQRAKMKKIQ+KA+Q+ K D +D +P +K+E +
Sbjct: 181 KVREALAKDTGLSVRIVQVWFQNQRAKMKKIQKKARQENKSKDSDSGDDRKPKLKEEDSN 240
Query: 95 E 95
E
Sbjct: 241 E 241
>gi|157118344|ref|XP_001653181.1| lim homeobox protein [Aedes aegypti]
gi|108883304|gb|EAT47529.1| AAEL001373-PA [Aedes aegypti]
Length = 391
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 52/76 (68%), Gaps = 9/76 (11%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK------QQEGDKS-LDKEDSEPHI 88
+VREALAKDTGLSVRVVQVWFQNQRAKMKKI RK+K +GDKS DKED I
Sbjct: 200 KVREALAKDTGLSVRVVQVWFQNQRAKMKKISRKSKAAQSNGNSDGDKSHSDKEDKS--I 257
Query: 89 KQEPHSEGESEWVSLD 104
K E S ++ +D
Sbjct: 258 KLESPVSDHSHYLGVD 273
>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
Length = 639
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 427 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 483
Query: 69 KAKQ 72
KAKQ
Sbjct: 484 KAKQ 487
>gi|194747127|ref|XP_001956004.1| GF24815 [Drosophila ananassae]
gi|190623286|gb|EDV38810.1| GF24815 [Drosophila ananassae]
Length = 613
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 402 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 458
Query: 69 KAKQ 72
KAKQ
Sbjct: 459 KAKQ 462
>gi|357612982|gb|EHJ68260.1| hypothetical protein KGM_10626 [Danaus plexippus]
Length = 327
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPH--IKQEPH 93
+VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK QEGDK+ DK+ + IKQE
Sbjct: 158 KVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK-QEGDKNNDKDKDKDEKSIKQESP 216
Query: 94 SEGESEWVSLDWRSSVQS 111
S ++ LD S S
Sbjct: 217 SSEHGNYLGLDNSYSASS 234
>gi|24663250|ref|NP_729801.1| CG32105, isoform B [Drosophila melanogaster]
gi|23093601|gb|AAF49930.2| CG32105, isoform B [Drosophila melanogaster]
gi|28316896|gb|AAO39470.1| RE70810p [Drosophila melanogaster]
Length = 640
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 428 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 484
Query: 69 KAKQ 72
KAKQ
Sbjct: 485 KAKQ 488
>gi|195327101|ref|XP_002030260.1| GM25340 [Drosophila sechellia]
gi|194119203|gb|EDW41246.1| GM25340 [Drosophila sechellia]
Length = 637
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 427 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 483
Query: 69 KAKQ 72
KAKQ
Sbjct: 484 KAKQ 487
>gi|158292633|ref|XP_558527.3| AGAP005137-PA [Anopheles gambiae str. PEST]
gi|157017083|gb|EAL40471.3| AGAP005137-PA [Anopheles gambiae str. PEST]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 53/75 (70%), Gaps = 8/75 (10%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ-----EGDKS-LDKEDSEPHIK 89
+VREALAKDTGLSVRVVQVWFQNQRAKMKKI RK+K +G+K+ DKED IK
Sbjct: 252 KVREALAKDTGLSVRVVQVWFQNQRAKMKKILRKSKANANGATDGEKNHSDKEDKS--IK 309
Query: 90 QEPHSEGESEWVSLD 104
E S S ++ LD
Sbjct: 310 LESPSSDHSHYLGLD 324
>gi|270002859|gb|EEZ99306.1| LIM homeobox transcription factor 1, beta [Tribolium castaneum]
Length = 388
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75
+VREALAK+TGLSVRVVQVWFQNQRAKMKKIQRKAKQ +G
Sbjct: 216 KVREALAKETGLSVRVVQVWFQNQRAKMKKIQRKAKQDDG 255
>gi|195589796|ref|XP_002084635.1| GD14373 [Drosophila simulans]
gi|194196644|gb|EDX10220.1| GD14373 [Drosophila simulans]
Length = 642
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 430 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 486
Query: 69 KAKQ 72
KAKQ
Sbjct: 487 KAKQ 490
>gi|195493808|ref|XP_002094572.1| GE21898 [Drosophila yakuba]
gi|194180673|gb|EDW94284.1| GE21898 [Drosophila yakuba]
Length = 642
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 428 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 484
Query: 69 KAKQ 72
KAKQ
Sbjct: 485 KAKQ 488
>gi|194869797|ref|XP_001972523.1| GG15572 [Drosophila erecta]
gi|190654306|gb|EDV51549.1| GG15572 [Drosophila erecta]
Length = 652
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 436 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 492
Query: 69 KAKQ 72
KAKQ
Sbjct: 493 KAKQ 496
>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
Length = 472
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75
+VREALAK+TGLSVRVVQVWFQNQRAKMKKIQRKAKQ +G
Sbjct: 300 KVREALAKETGLSVRVVQVWFQNQRAKMKKIQRKAKQDDG 339
>gi|195126146|ref|XP_002007535.1| GI13003 [Drosophila mojavensis]
gi|193919144|gb|EDW18011.1| GI13003 [Drosophila mojavensis]
Length = 607
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 397 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 453
Query: 69 KAKQ 72
KAKQ
Sbjct: 454 KAKQ 457
>gi|195376257|ref|XP_002046913.1| GJ13148 [Drosophila virilis]
gi|194154071|gb|EDW69255.1| GJ13148 [Drosophila virilis]
Length = 588
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 377 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 433
Query: 69 KAKQ 72
KAKQ
Sbjct: 434 KAKQ 437
>gi|198464782|ref|XP_001353366.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
gi|198149877|gb|EAL30873.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
Length = 620
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 410 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 466
Query: 69 KAKQ 72
KAKQ
Sbjct: 467 KAKQ 470
>gi|195012851|ref|XP_001983760.1| GH15398 [Drosophila grimshawi]
gi|193897242|gb|EDV96108.1| GH15398 [Drosophila grimshawi]
Length = 618
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/100 (52%), Positives = 59/100 (59%), Gaps = 21/100 (21%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 408 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 464
Query: 69 KAKQ--------------QEGDKSLDKEDSEPH---IKQE 91
KAKQ + S DK+ SE +KQE
Sbjct: 465 KAKQNGGGTGGTGNGRGNSNANASDDKDSSEKEEKCVKQE 504
>gi|195160505|ref|XP_002021116.1| GL25169 [Drosophila persimilis]
gi|194118229|gb|EDW40272.1| GL25169 [Drosophila persimilis]
Length = 613
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + + K SF+ S P K VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR
Sbjct: 403 RTILTSQQRKQFKASFDQSPKPCRK---VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 459
Query: 69 KAKQ 72
KAKQ
Sbjct: 460 KAKQ 463
>gi|328715997|ref|XP_001946565.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 407
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/37 (94%), Positives = 37/37 (100%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
+VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK+KQ
Sbjct: 212 KVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKSKQ 248
>gi|170032119|ref|XP_001843930.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871879|gb|EDS35262.1| lim homeobox protein [Culex quinquefasciatus]
Length = 400
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK-QQEGDKSLDKEDS---EPHIKQE 91
+VREALAKDTGLSVRVVQVWFQNQRAKMKKI RK+K Q DK S E IK E
Sbjct: 214 KVREALAKDTGLSVRVVQVWFQNQRAKMKKISRKSKSNQNSSADADKNHSDKDEKSIKLE 273
Query: 92 PHSEGESEWVSL 103
S ++S+
Sbjct: 274 SPSSDHGHYLSV 285
>gi|312370935|gb|EFR19233.1| hypothetical protein AND_22857 [Anopheles darlingi]
Length = 411
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 50/74 (67%), Gaps = 7/74 (9%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ--QEGD---KSLDKEDSEPHIKQ 90
+VREALAKDTGLSVRVVQVWFQ+QRAKMKKI RK+K GD DK+D IK
Sbjct: 218 KVREALAKDTGLSVRVVQVWFQDQRAKMKKISRKSKSNGNGGDAEKNHSDKDDKS--IKL 275
Query: 91 EPHSEGESEWVSLD 104
E S S ++ LD
Sbjct: 276 ESPSSDHSHYLGLD 289
>gi|283464035|gb|ADB22601.1| Lim homeobox transcription factor [Saccoglossus kowalevskii]
Length = 198
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75
VRE+LA DTGLSVRVVQVWFQNQRAKMKKIQR+ Q++G
Sbjct: 3 VRESLAADTGLSVRVVQVWFQNQRAKMKKIQRRQLQEQG 41
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 37/40 (92%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75
+VRE+LA DTGLSVRVVQVWFQNQRAKMKKIQR+ Q++G
Sbjct: 245 KVRESLAADTGLSVRVVQVWFQNQRAKMKKIQRRQLQEQG 284
>gi|321473071|gb|EFX84039.1| hypothetical protein DAPPUDRAFT_24627 [Daphnia pulex]
Length = 225
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 36/36 (100%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 71
+VREALAK+TGLSVRVVQVWFQNQRAKMKK+QRKAK
Sbjct: 182 KVREALAKETGLSVRVVQVWFQNQRAKMKKLQRKAK 217
>gi|118343866|ref|NP_001071756.1| transcription factor protein [Ciona intestinalis]
gi|70570111|dbj|BAE06538.1| transcription factor protein [Ciona intestinalis]
Length = 625
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 12/76 (15%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE----------GDKSLDKEDSE 85
+VRE LAKDTGL+VRVVQVWFQNQRAKMKK+ ++ + QE G D+ S
Sbjct: 420 KVRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQQSQEAAAQKAREEFGYHVFDQMGSM 479
Query: 86 PHIKQE--PHSEGESE 99
PH Q P SEG E
Sbjct: 480 PHQIQHMMPGSEGMME 495
>gi|170032117|ref|XP_001843929.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871878|gb|EDS35261.1| lim homeobox protein [Culex quinquefasciatus]
Length = 453
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDS 84
++RE LAKDTGLS+R+VQVWFQNQRAKMKKIQ+K + +EG+K +S
Sbjct: 179 KIREGLAKDTGLSIRIVQVWFQNQRAKMKKIQKK-QLKEGNKGNHNSNS 226
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 10 QTIRLLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+TI + K SF S P K VRE LA +TGL+VRVVQVWFQNQRAKMKKI R
Sbjct: 344 RTILTTQQRRAFKASFEVSSKPCRK---VRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 400
Query: 69 KAKQQEGDK 77
+ +QQ+ ++
Sbjct: 401 RQQQQDHEQ 409
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%), Gaps = 3/43 (6%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKS 78
++RE+LA +TGLSVRVVQVWFQNQRAKMKK+ RK Q GDKS
Sbjct: 192 KIRESLASETGLSVRVVQVWFQNQRAKMKKLARK---QSGDKS 231
>gi|312370934|gb|EFR19232.1| hypothetical protein AND_22855 [Anopheles darlingi]
Length = 919
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKS 78
++RE LAKDTGLS+R+VQVWFQNQRAKMKKIQ+K + ++G K+
Sbjct: 161 KIREGLAKDTGLSIRIVQVWFQNQRAKMKKIQKK-QLKDGSKN 202
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
+VRE LAK+TGLSVRVVQVWFQNQRAKMKK+ RK+
Sbjct: 198 KVRETLAKETGLSVRVVQVWFQNQRAKMKKLARKS 232
>gi|402592128|gb|EJW86057.1| hypothetical protein WUBG_03029, partial [Wuchereria bancrofti]
Length = 218
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIK 89
+VRE LAK+T LSVRVVQVWFQNQRAKMKKIQRK QE ++ D SE IK
Sbjct: 114 KVREQLAKETNLSVRVVQVWFQNQRAKMKKIQRK---QEVPEANDTACSEIDIK 164
>gi|256079939|ref|XP_002576241.1| lim homeobox protein [Schistosoma mansoni]
gi|350644840|emb|CCD60434.1| lim homeobox protein,putative [Schistosoma mansoni]
Length = 192
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK----AKQQEGDKSLDKEDSEPHIK 89
T ++REALA +TGL++RVVQVWFQNQRAK+KK+ R+ ++QQ + L + P I
Sbjct: 107 TRKIREALATETGLNIRVVQVWFQNQRAKIKKLARRHAQESRQQSNRRML---INNPMIN 163
Query: 90 QEPHSEGES 98
EP +S
Sbjct: 164 NEPMVRIQS 172
>gi|170586966|ref|XP_001898250.1| LIM homeobox transcription factor 1 alpha [Brugia malayi]
gi|158594645|gb|EDP33229.1| LIM homeobox transcription factor 1 alpha, putative [Brugia malayi]
Length = 177
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKS 78
+VRE LAK+T LSVRVVQVWFQNQRAKMKKIQRK + E +++
Sbjct: 72 KVREQLAKETNLSVRVVQVWFQNQRAKMKKIQRKQEVSEANET 114
>gi|402897927|ref|XP_003911988.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Papio anubis]
Length = 406
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
QVRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 251 QVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 284
>gi|70887599|ref|NP_001020669.1| LIM homeobox transcription factor 1, alpha [Danio rerio]
Length = 366
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE 74
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+ +QQ+
Sbjct: 213 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLVRRQQQQK 251
>gi|449688145|ref|XP_004211659.1| PREDICTED: homeobox protein unc-4-like [Hydra magnipapillata]
Length = 352
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 38/45 (84%), Gaps = 3/45 (6%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLD 80
++RE L+K+TGLSVRVVQVWFQNQRAK+KK+ RK +E +K LD
Sbjct: 125 KIREKLSKETGLSVRVVQVWFQNQRAKLKKLHRK---EENEKKLD 166
>gi|312089563|ref|XP_003146293.1| hypothetical protein LOAG_10721 [Loa loa]
gi|307758541|gb|EFO17775.1| hypothetical protein LOAG_10721 [Loa loa]
Length = 212
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIK 89
+VRE LAK+T LSVRVVQVWFQNQRAK+KKIQRK QE ++ D SE IK
Sbjct: 108 KVREQLAKETNLSVRVVQVWFQNQRAKLKKIQRK---QEISEANDTACSEMDIK 158
>gi|258504133|gb|ACV72766.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 179 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK-----------DSDSADTFKHGPGSE 227
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 228 GRS---TEDIRSS 237
>gi|258504135|gb|ACV72767.1| LIM-6 [Caenorhabditis remanei]
gi|258504137|gb|ACV72768.1| LIM-6 [Caenorhabditis remanei]
gi|258504139|gb|ACV72769.1| LIM-6 [Caenorhabditis remanei]
gi|258504141|gb|ACV72770.1| LIM-6 [Caenorhabditis remanei]
gi|258504143|gb|ACV72771.1| LIM-6 [Caenorhabditis remanei]
gi|258504147|gb|ACV72773.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 179 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK-----------DSDSTDTFKHGPGSE 227
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 228 GRS---TEDIRSS 237
>gi|258504145|gb|ACV72772.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 179 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK-----------DSDSTDTFKHGPGSE 227
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 228 GRS---TEDIRSS 237
>gi|444721284|gb|ELW62028.1| LIM homeobox transcription factor 1-beta [Tupaia chinensis]
Length = 471
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 143 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 176
>gi|308489722|ref|XP_003107054.1| CRE-LIM-6 protein [Caenorhabditis remanei]
gi|308252942|gb|EFO96894.1| CRE-LIM-6 protein [Caenorhabditis remanei]
Length = 314
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 212 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK-----------DSDSTDTFKHGPGSE 260
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 261 GRS---TEDIRSS 270
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 245 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 278
>gi|392925293|ref|NP_001256980.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
gi|351020895|emb|CCD62868.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
Length = 316
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 214 KVREQLANETGLSVRVVQVWFQNQRAKIKKLNKK-----------DSDSGDTFKHGPGSE 262
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 263 GRS---TEDIRSS 272
>gi|410979116|ref|XP_003995932.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Felis catus]
Length = 406
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|355567904|gb|EHH24245.1| LIM/homeobox protein LMX1B [Macaca mulatta]
Length = 367
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 212 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 245
>gi|301761900|ref|XP_002916368.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 3
[Ailuropoda melanoleuca]
Length = 406
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|341898967|gb|EGT54902.1| CBN-LIM-6 protein [Caenorhabditis brenneri]
Length = 316
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 215 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK-----------DSDSTDTFKHGPGSE 263
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 264 GRS---TEDIRSS 273
>gi|395505736|ref|XP_003757195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Sarcophilus harrisii]
Length = 404
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|334311511|ref|XP_003339631.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Monodelphis domestica]
Length = 401
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|358414621|ref|XP_003582878.1| PREDICTED: LIM homeobox transcription factor 1-beta [Bos taurus]
Length = 315
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 160 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 193
>gi|395505738|ref|XP_003757196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Sarcophilus harrisii]
Length = 401
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|292494915|ref|NP_001167618.1| LIM homeobox transcription factor 1-beta isoform 2 [Homo sapiens]
gi|301761896|ref|XP_002916366.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 1
[Ailuropoda melanoleuca]
gi|344271902|ref|XP_003407776.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Loxodonta africana]
gi|410979112|ref|XP_003995930.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Felis catus]
gi|281340079|gb|EFB15663.1| hypothetical protein PANDA_004429 [Ailuropoda melanoleuca]
Length = 402
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|344271900|ref|XP_003407775.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Loxodonta africana]
Length = 406
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|334311509|ref|XP_001366137.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Monodelphis domestica]
Length = 394
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|397473155|ref|XP_003808084.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Pan paniscus]
Length = 402
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|395505734|ref|XP_003757194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Sarcophilus harrisii]
Length = 394
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|417410318|gb|JAA51634.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 391
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 243 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 276
>gi|2497672|sp|Q60564.1|LMX1B_MESAU RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|1432087|gb|AAB62320.1| LIM-homeodomain protein [Mesocricetus auratus]
Length = 369
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 214 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 247
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 240 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 273
>gi|417410392|gb|JAA51670.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 398
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 243 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 276
>gi|47480835|gb|AAH69588.1| LMX1B protein [Homo sapiens]
Length = 377
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 222 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 255
>gi|292494913|ref|NP_001167617.1| LIM homeobox transcription factor 1-beta isoform 3 [Homo sapiens]
Length = 406
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|292494911|ref|NP_002307.2| LIM homeobox transcription factor 1-beta isoform 1 [Homo sapiens]
gi|301761898|ref|XP_002916367.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 2
[Ailuropoda melanoleuca]
gi|344271898|ref|XP_003407774.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Loxodonta africana]
gi|306921455|dbj|BAJ17807.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|387541732|gb|AFJ71493.1| LIM homeobox transcription factor 1-beta isoform 1 [Macaca mulatta]
Length = 395
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|348569787|ref|XP_003470679.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Cavia
porcellus]
Length = 402
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|440898169|gb|ELR49722.1| LIM homeobox transcription factor 1-beta [Bos grunniens mutus]
Length = 392
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 237 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 270
>gi|8247930|sp|O60663.2|LMX1B_HUMAN RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3335524|gb|AAC27294.1| LIM homeodomain protein [Homo sapiens]
gi|119608047|gb|EAW87641.1| LIM homeobox transcription factor 1, beta, isoform CRA_a [Homo
sapiens]
Length = 379
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|255759880|ref|NP_034855.2| LIM homeobox transcription factor 1-beta [Mus musculus]
gi|109112190|ref|XP_001097412.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Macaca mulatta]
gi|297685370|ref|XP_002820263.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Pongo abelii]
gi|395824199|ref|XP_003785358.1| PREDICTED: LIM homeobox transcription factor 1-beta [Otolemur
garnettii]
gi|403299811|ref|XP_003940668.1| PREDICTED: LIM homeobox transcription factor 1-beta [Saimiri
boliviensis boliviensis]
gi|410979114|ref|XP_003995931.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Felis catus]
gi|341940912|sp|O88609.2|LMX1B_MOUSE RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3132909|gb|AAC39738.1| LIM homeodomain protein LMX1B [Homo sapiens]
gi|47479658|gb|AAH69601.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|85567565|gb|AAI12121.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|109731283|gb|AAI13492.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|111600533|gb|AAI19170.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|116138517|gb|AAI25470.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|119608048|gb|EAW87642.1| LIM homeobox transcription factor 1, beta, isoform CRA_b [Homo
sapiens]
gi|148676655|gb|EDL08602.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|312150934|gb|ADQ31979.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|313882992|gb|ADR82982.1| LIM homeobox transcription factor 1, beta (LMX1B) [synthetic
construct]
Length = 372
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|385862228|ref|NP_001245353.1| LIM homeobox transcription factor 1-beta [Sus scrofa]
Length = 379
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|293345851|ref|XP_001078699.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Rattus norvegicus]
gi|293357761|ref|XP_001069713.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Rattus norvegicus]
Length = 395
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 247 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 280
>gi|410921390|ref|XP_003974166.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 354
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 200 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 233
>gi|149038965|gb|EDL93185.1| LIM homeobox transcription factor 1 beta [Rattus norvegicus]
Length = 372
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|219520075|gb|AAI43802.1| LMX1B protein [Homo sapiens]
Length = 383
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|297271296|ref|XP_002800229.1| PREDICTED: LIM homeobox transcription factor 1-beta [Macaca
mulatta]
Length = 385
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|3348118|gb|AAC27793.1| LIM homeodomain protein [Mus musculus]
Length = 372
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|432889048|ref|XP_004075119.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 357
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 253 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 286
>gi|301616967|ref|XP_002937918.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 400
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|297685372|ref|XP_002820264.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Pongo abelii]
Length = 383
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|29500723|gb|AAO74860.1| LMX1B [Canis lupus familiaris]
Length = 309
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 165 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 198
>gi|332230039|ref|XP_003264194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Nomascus leucogenys]
Length = 408
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 253 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 286
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 188 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 221
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 217 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 250
>gi|355763645|gb|EHH62200.1| LIM/homeobox protein LMX1B [Macaca fascicularis]
Length = 379
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 228 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 261
>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Oreochromis niloticus]
Length = 456
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 221 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 254
>gi|332230041|ref|XP_003264195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Nomascus leucogenys]
Length = 401
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 253 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 286
>gi|332230043|ref|XP_003264196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Nomascus leucogenys]
Length = 416
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 253 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 286
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 224 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 257
>gi|301616969|ref|XP_002937919.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 279
>gi|410979118|ref|XP_003995933.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 4
[Felis catus]
Length = 382
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>gi|449478514|ref|XP_002188995.2| PREDICTED: LIM/homeobox protein LMX-1.2-like [Taeniopygia guttata]
Length = 352
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 198 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 231
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 220 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 253
>gi|392925295|ref|NP_001256981.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
gi|351020894|emb|CCD62867.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
Length = 310
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 21/97 (21%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K DS K P SE
Sbjct: 214 KVREQLANETGLSVRVVQVWFQNQRAKIKKLNKK-----------DSDSGDTFKHGPGSE 262
Query: 96 GESEWVSLDWRSSVQSPVGDKKKS--SSVLKIGYELG 130
G S + D RSS D+++S S + +IG ++G
Sbjct: 263 GRS---TEDIRSS-----DDEEESVISKLKRIGIDIG 291
>gi|47220025|emb|CAG12173.1| unnamed protein product [Tetraodon nigroviridis]
Length = 318
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 144 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 177
>gi|45382493|ref|NP_990689.1| LIM/homeobox protein LMX-1.2 [Gallus gallus]
gi|1708855|sp|P53413.1|LMX1B_CHICK RecName: Full=LIM/homeobox protein LMX-1.2; Short=Homeobox protein
LMX-1; Short=LIM/homeobox protein 1; Short=LMX
gi|1050198|gb|AAA96240.1| LIM1 domain bp 172-315, LIM2 domain bp 349-501, homeobox domain bp
655-831 [Gallus gallus]
Length = 377
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 256
>gi|449268581|gb|EMC79437.1| LIM/homeobox protein LMX-1.2, partial [Columba livia]
Length = 291
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 137 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 170
>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 348
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 200 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 233
>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 361
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 203 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 236
>gi|354507888|ref|XP_003515986.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
[Cricetulus griseus]
Length = 243
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 180 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 213
>gi|344235434|gb|EGV91537.1| LIM homeobox transcription factor 1-beta [Cricetulus griseus]
Length = 233
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 129 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 162
>gi|326910973|ref|XP_003201838.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Meleagris gallopavo]
Length = 299
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKKI R+
Sbjct: 143 KVRETLAAETGLTVRVVQVWFQNQRAKMKKIARR 176
>gi|268576445|ref|XP_002643202.1| C. briggsae CBR-LIM-6 protein [Caenorhabditis briggsae]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 14/73 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ +K +G DS K P SE
Sbjct: 155 KVREQLANETGLSVRVVQVWFQNQRAKIKKMNKK----DG-------DSGDVFKHGPGSE 203
Query: 96 GESEWVSLDWRSS 108
G S + D RSS
Sbjct: 204 GRS---TEDIRSS 213
>gi|1145814|gb|AAA84995.1| LIM homeodomain protein [Gallus gallus]
Length = 377
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 255
>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 368
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGL+VRVVQVWFQNQRAKMKK+ R+
Sbjct: 216 KVRETLAAETGLTVRVVQVWFQNQRAKMKKLARR 249
>gi|327291350|ref|XP_003230384.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
[Anolis carolinensis]
Length = 185
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 137 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 170
>gi|358336024|dbj|GAA54597.1| LIM homeobox transcription factor 1-beta [Clonorchis sinensis]
Length = 412
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
++RE LA +TGL++RVVQVWFQNQRAKMKK+ R+ Q
Sbjct: 160 KLRETLASETGLNIRVVQVWFQNQRAKMKKLARRQAQ 196
>gi|345324971|ref|XP_001508423.2| PREDICTED: hypothetical protein LOC100077160 [Ornithorhynchus
anatinus]
Length = 352
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 151 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 181
>gi|170586684|ref|XP_001898109.1| Homeobox protein ceh-14 [Brugia malayi]
gi|158594504|gb|EDP33088.1| Homeobox protein ceh-14, putative [Brugia malayi]
Length = 319
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGD----KSLDKEDSEPH--IK 89
VRE LA DTGL +RVVQVWFQN+RAK K++++ A +Q G KSLD + P+ I
Sbjct: 175 HVREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRQWGTYGIPKSLDSGSASPNDSIC 234
Query: 90 QEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGF 131
+ P G ++ + + Q VG + S GY G
Sbjct: 235 ESP-VYGVGGYLDMPMDTDGQFDVGYEADS------GYSCGM 269
>gi|148227168|ref|NP_001083902.1| LIM homeobox transcription factor 1-beta.1 [Xenopus laevis]
gi|82216057|sp|Q8UVR3.1|LMX1B_XENLA RecName: Full=LIM homeobox transcription factor 1-beta.1; AltName:
Full=LIM homeobox protein 1b; Short=Xlmx1b
gi|16974694|gb|AAL32444.1|AF414086_1 LIM homeobox protein 1b [Xenopus laevis]
Length = 400
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKIKKLARR 279
>gi|405971991|gb|EKC36790.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 343
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ R+ Q
Sbjct: 182 KVREQLAAETGLSVRVVQVWFQNQRAKVKKLARRQNQ 218
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 218 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 248
>gi|440910599|gb|ELR60379.1| LIM homeobox transcription factor 1-alpha, partial [Bos grunniens
mutus]
Length = 303
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 144 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 174
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 220 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 250
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 483 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 516
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 209 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 239
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 220 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 250
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 222 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
africana]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
protein 1; Short=LMX-1
gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Cricetulus griseus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|326930568|ref|XP_003211418.1| PREDICTED: LIM/homeobox protein LMX-1.2-like [Meleagris gallopavo]
Length = 281
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
+VRE LA +TGLSVRVVQVWFQNQRAKMKK +R
Sbjct: 128 KVRETLAAETGLSVRVVQVWFQNQRAKMKKPRR 160
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|402581255|gb|EJW75203.1| hypothetical protein WUBG_13886 [Wuchereria bancrofti]
Length = 185
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGD----KSLDKEDSEPH 87
VRE LA DTGL +RVVQVWFQN+RAK K++++ A +Q G KSLD + P+
Sbjct: 41 HVREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRQWGTYGIPKSLDSGSASPN 96
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|344236825|gb|EGV92928.1| LIM homeobox transcription factor 1-alpha [Cricetulus griseus]
Length = 333
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 174 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 204
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 209 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 239
>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
Length = 375
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 222 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
Length = 375
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 222 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|47206964|emb|CAF90481.1| unnamed protein product [Tetraodon nigroviridis]
Length = 281
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 119 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 149
>gi|312075006|ref|XP_003140224.1| hypothetical protein LOAG_04639 [Loa loa]
Length = 325
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG----DKSLDKEDSEPH 87
+RE LA DTGL +RVVQVWFQN+RAK K++++ A +Q G KSLD + P+
Sbjct: 174 HIREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRQWGTYGITKSLDSGSASPN 229
>gi|410922082|ref|XP_003974512.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Takifugu
rubripes]
Length = 375
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 221 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 251
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 864 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 897
>gi|348516128|ref|XP_003445591.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Oreochromis niloticus]
Length = 399
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 245 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 275
>gi|393912072|gb|EFO23845.2| hypothetical protein LOAG_04639 [Loa loa]
Length = 319
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG----DKSLDKEDSEPH 87
+RE LA DTGL +RVVQVWFQN+RAK K++++ A +Q G KSLD + P+
Sbjct: 168 HIREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRQWGTYGITKSLDSGSASPN 223
>gi|297662848|ref|XP_002809900.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Pongo abelii]
Length = 489
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 330 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 360
>gi|432874756|ref|XP_004072577.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 398
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 245 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 275
>gi|3046880|gb|AAC13544.1| LIM-homeodomain protein LMX1B/LMX1.2 [Homo sapiens]
Length = 161
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 130 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 160
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 332 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 365
>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 319
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKS----LDKEDSE 85
+VRE LA +TGL++RVVQVWFQNQRAK+KK RK + +K L ED E
Sbjct: 187 KVREQLAAETGLTIRVVQVWFQNQRAKVKKTSRKGGKDTNEKGRKRKLRSEDGE 240
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 624 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 657
>gi|47212495|emb|CAG12709.1| unnamed protein product [Tetraodon nigroviridis]
Length = 285
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 136 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 166
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/30 (86%), Positives = 28/30 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+VRE LA +TGLSVRVVQVWFQNQRAKMKK
Sbjct: 215 KVRETLAAETGLSVRVVQVWFQNQRAKMKK 244
>gi|327290473|ref|XP_003229947.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like, partial
[Anolis carolinensis]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+
Sbjct: 134 KVRETLAAETGLSVRVVQVWFQNQRAKIKKL 164
>gi|189234898|ref|XP_967153.2| PREDICTED: similar to lim homeobox protein, partial [Tribolium
castaneum]
Length = 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ-QEGDKSLDKEDSEPHIKQEPHS 94
+VREALAKDTGLSVR+VQVWFQNQRAKMKK+Q+KA+Q +G K D +D + ++K+E S
Sbjct: 177 KVREALAKDTGLSVRIVQVWFQNQRAKMKKMQKKARQDNKGGKDADNDDKKLNVKEEEQS 236
Query: 95 EGESEWVSLDWRSSVQSPVGD 115
+ + + D S ++ GD
Sbjct: 237 PRSTPFYN-DSCSDTETTPGD 256
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 468 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 501
>gi|270002858|gb|EEZ99305.1| LIM homeobox transcription factor 1, beta 2 [Tribolium castaneum]
Length = 353
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ-QEGDKSLDKEDSEPHIKQEPHS 94
+VREALAKDTGLSVR+VQVWFQNQRAKMKK+Q+KA+Q +G K D +D + ++K+E S
Sbjct: 173 KVREALAKDTGLSVRIVQVWFQNQRAKMKKMQKKARQDNKGGKDADNDDKKLNVKEEEQS 232
Query: 95 EGESEWVSLDWRSSVQSPVGDKKKSSSVLK 124
+ ++E D ++ P D K +K
Sbjct: 233 D-DTETTPGDG-DALMHPRADSKHHFLAIK 260
>gi|442615579|ref|NP_001259358.1| Lim1, isoform B [Drosophila melanogaster]
gi|440216561|gb|AGB95201.1| Lim1, isoform B [Drosophila melanogaster]
Length = 347
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK---MKKIQ 67
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K MK+I
Sbjct: 95 TIKAKQLEV-LKTAFNQTP--KPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 151
Query: 68 RKAK 71
+
Sbjct: 152 SMGR 155
>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
Length = 501
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
Length = 498
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
Length = 503
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
Length = 506
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
Length = 528
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
Length = 500
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
Length = 504
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
Length = 505
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
Length = 500
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L+V LKT+FN T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 253 TIKAKQLEV-LKTAFNQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ 307
>gi|371573888|gb|AEX38314.1| Lmx [Mnemiopsis leidyi]
Length = 428
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG---DKSLD 80
RE L+ TGLSVRVVQVWFQNQRAK+KK+ R+ ++ D LD
Sbjct: 239 REKLSSQTGLSVRVVQVWFQNQRAKVKKLARRKLNKQAVNSDSDLD 284
>gi|118344350|ref|NP_001071998.1| transcription factor protein [Ciona intestinalis]
gi|70570117|dbj|BAE06539.1| transcription factor protein [Ciona intestinalis]
Length = 505
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLS RVVQVWFQNQRAKMKK+ R+
Sbjct: 274 KVRETLASETGLSPRVVQVWFQNQRAKMKKLARR 307
>gi|56694834|gb|AAW23079.1| Lmx-b [Oikopleura dioica]
gi|313239052|emb|CBY14034.1| unnamed protein product [Oikopleura dioica]
Length = 419
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA++TGLS RVVQVWFQNQRAK+KKI ++
Sbjct: 265 KVREKLAEETGLSQRVVQVWFQNQRAKVKKIAKR 298
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LKT++ NS P VRE LA++TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 230 LKTAYSNSPKPAR---HVREQLAQETGLDMRVVQVWFQNRRAKEKRLKKDANRQ 280
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK++++S VRE LA+DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 282 LKSAYSS--SPKPARHVREQLAQDTGLDMRVVQVWFQNRRAKEKRLKKDA 329
>gi|194869786|ref|XP_001972521.1| GG13839 [Drosophila erecta]
gi|190654304|gb|EDV51547.1| GG13839 [Drosophila erecta]
Length = 531
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 9/73 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 356 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 415
Query: 87 HIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 416 KIKDEAHSDSESQ 428
>gi|195589788|ref|XP_002084631.1| GD12730 [Drosophila simulans]
gi|194196640|gb|EDX10216.1| GD12730 [Drosophila simulans]
Length = 527
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 9/73 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 352 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 411
Query: 87 HIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 412 KIKDEAHSDSESQ 424
>gi|195327095|ref|XP_002030257.1| GM24666 [Drosophila sechellia]
gi|194119200|gb|EDW41243.1| GM24666 [Drosophila sechellia]
Length = 527
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 9/73 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 352 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 411
Query: 87 HIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 412 KIKDEAHSDSESQ 424
>gi|324516282|gb|ADY46481.1| Homeobox protein ceh-14 [Ascaris suum]
Length = 324
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ----EGDKSLDKEDSEP 86
VRE LA DTGL +RVVQVWFQN+RAK K++++ A ++ K LD + + P
Sbjct: 176 HVREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRRWNAYGVPKGLDSDSASP 230
>gi|195493804|ref|XP_002094570.1| GE20130 [Drosophila yakuba]
gi|194180671|gb|EDW94282.1| GE20130 [Drosophila yakuba]
Length = 540
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 9/73 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 365 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 424
Query: 87 HIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 425 KIKDEAHSDSESQ 437
>gi|308220078|gb|ADO22611.1| LIM class homeobox transcription factor Lmx [Mnemiopsis leidyi]
Length = 1123
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG---DKSLD 80
RE L+ TGLSVRVVQVWFQNQRAK+KK+ R+ ++ D LD
Sbjct: 951 REKLSSQTGLSVRVVQVWFQNQRAKVKKLARRKLNKQAVNSDSDLD 996
>gi|241999336|ref|XP_002434311.1| lhx3, putative [Ixodes scapularis]
gi|215496070|gb|EEC05711.1| lhx3, putative [Ixodes scapularis]
Length = 252
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA-KQQEGD--- 76
LK+++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A K + GD
Sbjct: 108 LKSAYNNS--PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGKTRWGDFFR 165
Query: 77 KSLDKEDSEP 86
S +DSEP
Sbjct: 166 SSSGAKDSEP 175
>gi|281366134|ref|NP_648567.2| CG4328 [Drosophila melanogaster]
gi|211938623|gb|ACJ13208.1| FI06571p [Drosophila melanogaster]
gi|272455176|gb|AAF49932.2| CG4328 [Drosophila melanogaster]
Length = 544
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 9/73 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 369 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 428
Query: 87 HIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 429 KIKDEAHSDSESQ 441
>gi|295798064|emb|CBL87029.1| lim3 protein [Tribolium castaneum]
Length = 223
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK ++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 23 LKNAYNNSP--KPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 70
>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
norvegicus]
Length = 263
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAK++++
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKLRQM 253
>gi|224058107|ref|XP_002195953.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 2 [Taeniopygia guttata]
Length = 362
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCEGS--------HSEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
+ E L+ Q+P D +K S+ +G +L + E+ E E++ + EEE
Sbjct: 147 KMEPPVLE----TQAPTPDTEKVQSLPSEVGTDLNLTLSEQSASESAPEDQTDREEE 199
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 271 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 318
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 271 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 318
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LKT++ NS P VRE LA++TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 290 LKTAYSNSPKPAR---HVREQLAQETGLDMRVVQVWFQNRRAKEKRLKKDANRQ 340
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 276 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 323
>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
Length = 523
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 274 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 321
>gi|307178765|gb|EFN67379.1| LIM/homeobox protein Lhx1 [Camponotus floridanus]
Length = 400
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
TI+ L++ LKT+F+S T +RE LAK+TGL +RV+QVWFQN+R+K ++++
Sbjct: 155 TIKAKQLEI-LKTAFSSTP--KPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLK 208
>gi|300837159|gb|ADK38611.1| LIM homeodomain protein 3 isoform M2-LHX3 [Canis lupus
familiaris]
Length = 265
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 39 LKSAYNTSP--KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 89
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 22/100 (22%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ------------EGDKSLDKED 83
VRE L+ DTGL +RVVQVWFQN+RAK K++++ +Q G + +
Sbjct: 234 HVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTSRQRWGEIFRSGAPSSGPQMHANPE 293
Query: 84 SEP----------HIKQEPHSEGESEWVSLDWRSSVQSPV 113
S P + ++ P S +S+ SS+QSPV
Sbjct: 294 SPPSGGKRRPGNHNSRKRPSSSPGGSRISVPIPSSIQSPV 333
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 275 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 322
>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
Length = 387
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRA 61
++RE LAKDTGLS+R+VQVWFQNQRA
Sbjct: 299 KIREGLAKDTGLSIRIVQVWFQNQRA 324
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
LK+++NS VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 216 LKSAYNSS--PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 265
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 247 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 294
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
LK+++NS VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 213 LKSAYNSS--PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 262
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
LK+++NS VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 213 LKSAYNSS--PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 262
>gi|307197381|gb|EFN78656.1| LIM/homeobox protein Lhx1 [Harpegnathos saltator]
Length = 286
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
TI+ L++ LK++F+S T +RE LAK+TGL +RV+QVWFQN+R+K ++++
Sbjct: 148 TIKAKQLEI-LKSAFSSTP--KPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLK 201
>gi|198464778|ref|XP_001353365.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
gi|198149875|gb|EAL30872.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 25/113 (22%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDS-EPH------ 87
+VRE LAK+TGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS E H
Sbjct: 379 KVRENLAKETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESHDSSLAT 438
Query: 88 -IKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEE 139
IK E HS+ ES+ ++SP + + S ++ I+EE+E+
Sbjct: 439 KIKDEAHSDSESQ---------MESPYSNASEGLSRMRC-------IKEEQEQ 475
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK+++NS VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKSAYNSS--PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|145587040|gb|ABP87885.1| IP01439p [Drosophila melanogaster]
Length = 467
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 9/74 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSL-DKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K D +DS+
Sbjct: 292 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 351
Query: 87 HIKQEPHSEGESEW 100
IK E HS+ ES+
Sbjct: 352 KIKDEAHSDSESQL 365
>gi|118094492|ref|XP_422451.2| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B isoform
2 [Gallus gallus]
Length = 367
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCESS--------HSEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ QS + D +K+ S+ + +L + E+ E E++ + EEE
Sbjct: 152 KTEPPVLE----TQSTIPDTEKTQSIPSEVSTDLNLTLSEQSASESAPEDQTDREEE 204
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
TI+ L++ LKT+F+ T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 293 TIKAKQLEI-LKTAFSQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 349
Query: 71 KQQEG 75
G
Sbjct: 350 SMGRG 354
>gi|327270987|ref|XP_003220269.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 1 [Anolis carolinensis]
Length = 367
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDSEAS--------HSEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E S Q+P D+ KS ++ + EL + E+ E E++ + EEE
Sbjct: 152 KAETPV----SEAQTPTPDEDKSLNLPSEVNTELNLTLSEQSASESAAEDQTDREEE 204
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 248 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 295
>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
Length = 507
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++ NS P VRE L+ +TGL +RVVQVWFQN+RAK K+++++A
Sbjct: 281 LKTAYENSPKPAR---HVREQLSSETGLDMRVVQVWFQNRRAKEKRMKKEA 328
>gi|241811703|ref|XP_002416452.1| lim homeobox protein, putative [Ixodes scapularis]
gi|215510916|gb|EEC20369.1| lim homeobox protein, putative [Ixodes scapularis]
Length = 155
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMK 64
+VRE LAK+TGLSVR+VQVWFQNQRAK++
Sbjct: 114 KVRETLAKETGLSVRIVQVWFQNQRAKVR 142
>gi|118094490|ref|XP_001234036.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B isoform
1 [Gallus gallus]
Length = 362
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCESS--------HSEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ QS + D +K+ S+ + +L + E+ E E++ + EEE
Sbjct: 147 KTEPPVLE----TQSTIPDTEKTQSIPSEVSTDLNLTLSEQSASESAPEDQTDREEE 199
>gi|327270989|ref|XP_003220270.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 2 [Anolis carolinensis]
Length = 362
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDSEAS--------HSEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E S Q+P D+ KS ++ + EL + E+ E E++ + EEE
Sbjct: 147 KAETPV----SEAQTPTPDEDKSLNLPSEVNTELNLTLSEQSASESAAEDQTDREEE 199
>gi|66571156|gb|AAY51543.1| IP01440p [Drosophila melanogaster]
Length = 272
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 9/74 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSL-DKEDSE--------P 86
+VRE LAKDTGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K D +DS+
Sbjct: 97 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAT 156
Query: 87 HIKQEPHSEGESEW 100
IK E HS+ ES+
Sbjct: 157 KIKDEAHSDSESQL 170
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 156 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 203
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK+++NS VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 325 LKSAYNS--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 372
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 26/26 (100%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRA 61
+VREALAK+TGLSVR+VQVWFQNQRA
Sbjct: 242 KVREALAKETGLSVRIVQVWFQNQRA 267
>gi|341877265|gb|EGT33200.1| CBN-CEH-14 protein [Caenorhabditis brenneri]
Length = 358
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE LA DTGL +RVVQVWFQN+RAK K++++ A ++
Sbjct: 213 HVREQLAADTGLDMRVVQVWFQNRRAKEKRLKKDAGRR 250
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 191 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 247 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 294
>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
Length = 486
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK ++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 263 LKLAYNT--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 310
>gi|18252581|gb|AAL66342.1|AF461038_1 paired-type homeobox Atx [Gallus gallus]
Length = 303
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 96 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCESS--------HSEG 147
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ QS + D +K+ S+ + +L + E+ E E++ + EEE
Sbjct: 148 KTEPPVLE----TQSTIPDTEKTQSIPSEVSTDLNLTLSEQSASESAPEDQTDREEE 200
>gi|332022879|gb|EGI63151.1| LIM/homeobox protein Lhx1 [Acromyrmex echinatior]
Length = 548
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L++ LKT+F+S T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 260 TIKAKQLEI-LKTAFSST--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQ 314
>gi|195376251|ref|XP_002046910.1| GJ12228 [Drosophila virilis]
gi|194154068|gb|EDW69252.1| GJ12228 [Drosophila virilis]
Length = 564
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQR------AKMKKIQRKAKQQEGDKSLDKEDSE---- 85
+VRE LAKDTGLS+R+VQVWFQNQR K K + AK S D ++S
Sbjct: 384 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPAKGVSDSHSQDSQESHDSSL 443
Query: 86 -PHIKQEPHSEGESE 99
IK E HS+ ES+
Sbjct: 444 TAKIKDEAHSDSESQ 458
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LKT++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 193 LKTAYNN--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 240
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 26/88 (29%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSE 95
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 206 HVREQLSRDTGLDMRVVQVWFQNRRAKEKRLKKDAG------------------------ 241
Query: 96 GESEWVSL--DWRSSVQSPVGDKKKSSS 121
G++ WV+ D+ + QS G +K+ S
Sbjct: 242 GKARWVASAGDYYGAPQSGGGGRKRPPS 269
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDK--EDSEPHIKQEPH 93
VRE L+ DTGL +RVVQVWFQN+RAK K++++ +Q + S PH + P
Sbjct: 351 HVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTGRQRWGELFRSGAPSSGPHCRPNPD 410
Query: 94 S 94
S
Sbjct: 411 S 411
>gi|326925298|ref|XP_003208854.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 1 [Meleagris gallopavo]
Length = 367
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCEGS--------HSEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ QS + D +K+ S+ + +L + E+ E E++ + EEE
Sbjct: 152 KTEPPVLE----TQSTIPDSEKTQSLPSEVSTDLNLTLSEQSASESAPEDQTDREEE 204
>gi|326925300|ref|XP_003208855.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 2 [Meleagris gallopavo]
Length = 362
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S HSEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCEGS--------HSEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK-IGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ QS + D +K+ S+ + +L + E+ E E++ + EEE
Sbjct: 147 KTEPPVLE----TQSTIPDSEKTQSLPSEVSTDLNLTLSEQSASESAPEDQTDREEE 199
>gi|156393340|ref|XP_001636286.1| predicted protein [Nematostella vectensis]
gi|156223388|gb|EDO44223.1| predicted protein [Nematostella vectensis]
Length = 184
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 29/30 (96%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+VRE L+++TGLSVRVVQVWFQNQRAK++K
Sbjct: 155 KVREELSRETGLSVRVVQVWFQNQRAKVQK 184
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
TI+ L++ LKT+F+ T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 307 TIKAKQLEI-LKTAFSQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 363
Query: 71 KQQEG 75
G
Sbjct: 364 SMGRG 368
>gi|328723694|ref|XP_001946328.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 415
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRA 61
+VRE LA DTGLSVR+VQVWFQNQRA
Sbjct: 208 KVREGLAHDTGLSVRIVQVWFQNQRA 233
>gi|195440768|ref|XP_002068212.1| GK12807 [Drosophila willistoni]
gi|194164297|gb|EDW79198.1| GK12807 [Drosophila willistoni]
Length = 554
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 9/72 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK-SLDKEDSE--------P 86
+VRE LAK+TGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K + D +DS+
Sbjct: 378 KVRENLAKETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESQDSSLAT 437
Query: 87 HIKQEPHSEGES 98
IK E HS+ ES
Sbjct: 438 KIKDEAHSDSES 449
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K+I+R +Q
Sbjct: 357 HVREQLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQ 394
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 227 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 261
>gi|443694943|gb|ELT95961.1| hypothetical protein CAPTEDRAFT_92150, partial [Capitella teleta]
Length = 60
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMK 64
+VRE+LA +TGL+VRVVQVWFQNQRAK+K
Sbjct: 20 KVRESLAAETGLTVRVVQVWFQNQRAKVK 48
>gi|70570095|dbj|BAE06535.1| transcription factor protein [Ciona intestinalis]
Length = 386
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA+DTGLS+RV+QVWFQN+R+K ++I+
Sbjct: 240 TRHIREKLAQDTGLSMRVIQVWFQNRRSKERRIK 273
>gi|198413993|ref|XP_002122079.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 387
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA+DTGLS+RV+QVWFQN+R+K ++I+
Sbjct: 241 TRHIREKLAQDTGLSMRVIQVWFQNRRSKERRIK 274
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 183 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 217
>gi|308051668|gb|ADO00272.1| LIM homeodomain box protein 3 [Canis lupus familiaris]
Length = 107
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ + VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 20 LKSAYNTSPKPAR--HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 70
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N VRE L+ +TGL +RVVQVWFQN+RAK K+I+R +Q
Sbjct: 425 LKSAYNQ--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQ 475
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 204 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 238
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N VRE L+ +TGL +RVVQVWFQN+RAK K+I+R +Q
Sbjct: 425 LKSAYNQ--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQ 475
>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
Length = 463
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 253 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 289
>gi|380012090|ref|XP_003690122.1| PREDICTED: LIM/homeobox protein Lhx3-like [Apis florea]
Length = 465
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 255 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 291
>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
Length = 463
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 253 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 289
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|7511466|pir||T34266 LIM homeobox protein ceh-14 - Caenorhabditis elegans
Length = 348
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE LA +TGL +RVVQVWFQN+RAK K++++ A ++
Sbjct: 205 HVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRR 242
>gi|328782955|ref|XP_394135.3| PREDICTED: LIM/homeobox protein Lhx3 [Apis mellifera]
Length = 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 253 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 289
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 223 LKSAYNAS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 273
>gi|345493999|ref|XP_001603795.2| PREDICTED: LIM/homeobox protein Lhx3-like [Nasonia vitripennis]
Length = 450
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 219 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 255
>gi|332018435|gb|EGI59029.1| LIM/homeobox protein Lhx3 [Acromyrmex echinatior]
Length = 467
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 249 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 283
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 260 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 294
>gi|313234650|emb|CBY10605.1| unnamed protein product [Oikopleura dioica]
Length = 289
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 33/38 (86%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE+L+ +TGL +RVVQVWFQN+RAK K+++++A +Q
Sbjct: 197 HVRESLSTETGLDMRVVQVWFQNRRAKEKRLKKEAGRQ 234
>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
Length = 421
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
VRE L++DTGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 250 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 286
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|56694836|gb|AAW23080.1| Lim3 [Oikopleura dioica]
Length = 289
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 33/38 (86%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE+L+ +TGL +RVVQVWFQN+RAK K+++++A +Q
Sbjct: 197 HVRESLSTETGLDMRVVQVWFQNRRAKEKRLKKEAGRQ 234
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|17551226|ref|NP_509273.1| Protein CEH-14 [Caenorhabditis elegans]
gi|21264444|sp|P20271.3|HM14_CAEEL RecName: Full=Homeobox protein ceh-14
gi|8572736|gb|AAF77181.1|AF244368_1 LIM homeobox protein CEH-14 [Caenorhabditis elegans]
gi|351063218|emb|CCD71294.1| Protein CEH-14 [Caenorhabditis elegans]
Length = 351
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE LA +TGL +RVVQVWFQN+RAK K++++ A ++
Sbjct: 208 HVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRR 245
>gi|195160501|ref|XP_002021114.1| GL25001 [Drosophila persimilis]
gi|194118227|gb|EDW40270.1| GL25001 [Drosophila persimilis]
Length = 458
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%), Gaps = 9/74 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSL-DKEDS-EPH------ 87
+VRE LAK+TGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K D +DS E H
Sbjct: 381 KVRENLAKETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESHDSSLAT 440
Query: 88 -IKQEPHSEGESEW 100
IK E HS+ ES+
Sbjct: 441 KIKDEAHSDSESQM 454
>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
Length = 467
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 249 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 283
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|327291516|ref|XP_003230467.1| PREDICTED: LIM/homeobox protein Lhx3-like, partial [Anolis
carolinensis]
Length = 314
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 88 LKSAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 138
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 157 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 207
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 169 LKNAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 439 LKNAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 489
>gi|256073006|ref|XP_002572824.1| lhx-5 [Schistosoma mansoni]
gi|360042903|emb|CCD78313.1| putative lim homeobox protein [Schistosoma mansoni]
Length = 397
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
LKT+F + P T VRE+LA++TGLS+RV+QVWFQN+R+K ++++
Sbjct: 67 LKTAF-AATP-KPTRHVRESLAQETGLSMRVIQVWFQNRRSKERRMK 111
>gi|158287501|ref|XP_309513.3| AGAP011134-PA [Anopheles gambiae str. PEST]
gi|157019681|gb|EAA05265.3| AGAP011134-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
TI+ L+V LK +F+ T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 250 TIKAKQLEV-LKNAFSQT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 306
Query: 71 KQQEG 75
G
Sbjct: 307 SMGRG 311
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
LK+++N+ VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 189 LKSAYNA--SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 236
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 171 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 221
>gi|195012862|ref|XP_001983762.1| GH16074 [Drosophila grimshawi]
gi|193897244|gb|EDV96110.1| GH16074 [Drosophila grimshawi]
Length = 583
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQR------AKMKKIQRKAKQQEGDKSLDKEDSE---- 85
+VRE LAKDTGLS+R+VQVWFQNQR K K + AK S D ++S+
Sbjct: 406 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPAKSVSDTHSQDSQESQDSSL 465
Query: 86 -PHIKQEPHSEGESE 99
IK E S+ ES+
Sbjct: 466 TTKIKDEAQSDSESQ 480
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|322793254|gb|EFZ16911.1| hypothetical protein SINV_14186 [Solenopsis invicta]
Length = 392
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 168 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 202
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 145 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 195
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 161 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 211
>gi|110339247|gb|ABG67887.1| LMX, partial [Nematostella vectensis]
Length = 60
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 29/30 (96%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+VRE L+++TGLSVRVVQVWFQNQRAK++K
Sbjct: 29 KVREELSRETGLSVRVVQVWFQNQRAKVQK 58
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 148 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 198
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 165 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 215
>gi|340710825|ref|XP_003393984.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus terrestris]
Length = 479
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L++ LK++F+S T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 251 TIKAKQLEI-LKSAFSST--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQ 305
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LKT++ NS P VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 183 LKTAYANSPKPAR---HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDANRQ 233
>gi|441623345|ref|XP_003279691.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Nomascus
leucogenys]
Length = 419
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 186 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 236
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 152 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 202
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 148 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 198
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 176 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 226
>gi|197281996|gb|ACH57177.1| Lim1 [Trichoplax adhaerens]
Length = 60
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 3/39 (7%)
Query: 27 SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
S PG +VR+ L++ TGLS RVVQVWFQNQRAK+KK
Sbjct: 23 SSKPGK---EVRDELSRKTGLSARVVQVWFQNQRAKLKK 58
>gi|194747131|ref|XP_001956006.1| GF24989 [Drosophila ananassae]
gi|190623288|gb|EDV38812.1| GF24989 [Drosophila ananassae]
Length = 554
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 9/74 (12%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSL-DKEDSE--------P 86
+VRE LAK+TGLS+R+VQVWFQNQRAK+KKIQ+KAKQ+ K D +DS+
Sbjct: 377 KVRENLAKETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLAA 436
Query: 87 HIKQEPHSEGESEW 100
IK E HS+ ES+
Sbjct: 437 KIKDEAHSDSESQM 450
>gi|383853574|ref|XP_003702297.1| PREDICTED: LIM/homeobox protein Lhx5-like [Megachile rotundata]
Length = 485
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
TI+ L++ LK++F+S T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 258 TIKAKQLEI-LKSAFSST--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQ 312
>gi|9971753|gb|AAG10399.1| lim-homeobox transcription factor LHX3 [Homo sapiens]
Length = 397
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 177 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|268580151|ref|XP_002645058.1| C. briggsae CBR-CEH-14 protein [Caenorhabditis briggsae]
Length = 351
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
+RE LA +TGL +RVVQVWFQN+RAK K++++ A ++
Sbjct: 208 HIREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRR 245
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKNAYNNS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|444730493|gb|ELW70875.1| LIM/homeobox protein Lhx4 [Tupaia chinensis]
Length = 768
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA-KQQEGDKSLDKEDSEPHIKQEPHS 94
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A + + G + S KQE S
Sbjct: 563 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKES 622
Query: 95 EGESEWVS 102
E VS
Sbjct: 623 SAEDCGVS 630
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 188 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>gi|195126142|ref|XP_002007533.1| GI12337 [Drosophila mojavensis]
gi|193919142|gb|EDW18009.1| GI12337 [Drosophila mojavensis]
Length = 586
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQR------AKMKKIQRKAKQQEGDKSLDKEDSE---- 85
+VRE LAKDTGLS+R+VQVWFQNQR K K + AK S D ++S
Sbjct: 400 KVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPAKGVSDSHSQDSQESHDSSL 459
Query: 86 -PHIKQEPHSEGESE 99
IK E S+ ES+
Sbjct: 460 TAKIKDEAQSDSESQ 474
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 190 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 194 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 231
>gi|301611522|ref|XP_002935283.1| PREDICTED: LIM/homeobox protein Lhx3-like [Xenopus (Silurana)
tropicalis]
Length = 362
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 149 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 186
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSTETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSTETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 190 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 227
>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
Length = 481
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 10/90 (11%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR-- 68
TI+ L+V LK++F + T +RE LAK+TGL +RV+QVWFQN+R+K +++++
Sbjct: 270 TIKAKQLEV-LKSAFAAT--PKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQLS 326
Query: 69 --KAKQQ--EGDKSLDKEDSEPHIKQEPHS 94
A++Q G + L D P + PH+
Sbjct: 327 ALGARRQFFRGPRRLRALDENPDL-MGPHN 355
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 166 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 203
>gi|449269080|gb|EMC79889.1| LIM/homeobox protein Lhx3, partial [Columba livia]
Length = 342
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 129 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 166
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 189 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 226
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 158 HVREQLSTETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 195
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 186 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 223
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>gi|350396477|ref|XP_003484565.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus impatiens]
Length = 419
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
TI+ L++ LK++F+S T +RE LAK+TGL +RV+QVWFQN+R+K ++++
Sbjct: 244 TIKAKQLEI-LKSAFSS--TPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLK 297
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 173 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 210
>gi|189531420|ref|XP_692222.3| PREDICTED: zinc finger homeobox protein 3 [Danio rerio]
Length = 3349
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 16 NLKVKLKTSFNSCCPGHKTTQVRE--ALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
NL+VK+ +C +KT + E AL D GL+ RVVQVWFQN RAK KK + +Q
Sbjct: 2732 NLQVKV---LKACFSDYKTPTMLECEALGNDIGLAKRVVQVWFQNARAKEKKAKLSLAKQ 2788
Query: 74 EG--DKSLDKEDSE 85
G S+D+ +E
Sbjct: 2789 FGTESTSIDRPKTE 2802
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
T ++ + ++ + GL RVVQVWFQN RA+ +K Q +A
Sbjct: 2464 TRKMLDHISNEVGLKKRVVQVWFQNTRARERKGQFRA 2500
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 159 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 196
>gi|301603585|ref|XP_002931449.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 1 [Xenopus (Silurana) tropicalis]
Length = 362
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S SEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDSEVSN--------SEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEE 148
++E D +S Q KK SSV EL + E+ E EE +
Sbjct: 147 KTESTPADSATSNQ---DSKKAHSSVNDSSVELNLTLSEQSASESAAEEHTD 195
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
TI+ L+ LK +F + T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 186 TIKAKQLETLLKAAFAAT--PKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 240
>gi|301603587|ref|XP_002931450.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
isoform 2 [Xenopus (Silurana) tropicalis]
Length = 367
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S SEG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDSEVSN--------SEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEE 148
++E D +S Q KK SSV EL + E+ E EE +
Sbjct: 152 KTESTPADSATSNQ---DSKKAHSSVNDSSVELNLTLSEQSASESAAEEHTD 200
>gi|449266387|gb|EMC77440.1| Diencephalon/mesencephalon homeobox protein 1-B [Columba livia]
Length = 362
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E + HSEG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCEGN--------HSEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E L+ + V +P +K +S ++G +L + E+ E E++ + EEE
Sbjct: 147 KTEPPMLE--TQVTTPDTEKVQSLPS-EVGTDLNLTLSEQSASESAPEDQTDREEE 199
>gi|345497659|ref|XP_001601152.2| PREDICTED: LIM/homeobox protein Lhx5-like [Nasonia vitripennis]
Length = 475
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Query: 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
TI+ L++ LKT+F+ T +RE LAK+TGL +RV+QVWFQN+R+K ++++
Sbjct: 247 TIKAKQLEI-LKTAFSQ--TPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLK 300
>gi|21668482|dbj|BAC01272.1| LIM homeobox protein 4 [Homo sapiens]
Length = 240
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++ NS P VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 22 LKNAYKNSPKPAR---HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 72
>gi|20339337|gb|AAM19349.1| LIM homeobox protein [Homo sapiens]
Length = 239
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++ NS P VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 21 LKNAYKNSPKPAR---HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 71
>gi|242011465|ref|XP_002426470.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
Length = 394
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75
T +RE LAK+TGL +RV+QVWFQN+R+K +++++ G
Sbjct: 208 TRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRG 249
>gi|558491|gb|AAB31260.1| LIM-type homeodomain [Mus sp.]
Length = 230
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 21 LKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK ++ NS P VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 12 LKNAYKNSPKPAR---HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 62
>gi|157820803|ref|NP_001101818.1| LIM/homeobox protein Lhx4 [Rattus norvegicus]
gi|149058350|gb|EDM09507.1| LIM homeobox protein 4 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 329
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 124 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 161
>gi|148707455|gb|EDL39402.1| LIM homeobox protein 4, isoform CRA_a [Mus musculus]
Length = 329
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 124 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 161
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 160 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 197
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 188 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 225
>gi|94039292|dbj|BAE93505.1| LIM homeobox protein 4 [Bos taurus]
Length = 181
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A
Sbjct: 66 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDA 100
>gi|431915961|gb|ELK16215.1| LIM/homeobox protein Lhx4 [Pteropus alecto]
Length = 329
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 124 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 161
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 186 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 223
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 160 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 197
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 186 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 223
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 159 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 196
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 211 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 248
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 162 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 199
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 171 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 208
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 186 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 223
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 261 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 298
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 162 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 199
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 184 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 221
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 219
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 171 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 208
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 12/61 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA------------KQQEGDKSLDKED 83
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A K+ G L+KE
Sbjct: 160 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGGKLEKES 219
Query: 84 S 84
S
Sbjct: 220 S 220
>gi|384500962|gb|EIE91453.1| hypothetical protein RO3G_16164 [Rhizopus delemar RA 99-880]
Length = 348
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK-AKQQEGDKSLDK-EDSEPHIK 89
+ RE LA+ +S R VQ+WFQN+RAK K Q++ KQ ++S DK +D+EPH K
Sbjct: 41 RARERLAESLSMSPRGVQIWFQNRRAKAKNQQQQDPKQDYAEQSHDKNDDNEPHAK 96
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 12/61 (19%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA------------KQQEGDKSLDKED 83
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A K+ G L+KE
Sbjct: 202 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGGKLEKES 261
Query: 84 S 84
S
Sbjct: 262 S 262
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 36 QVREALAKDTGLSVRVVQVW-FQNQRAKMKKI 66
VRE L+ +TGL +RVVQVW Q QR K K+I
Sbjct: 381 HVREQLSSETGLDMRVVQVWRLQKQREKKKRI 412
>gi|56694832|gb|AAW23078.1| Lmx-a, partial [Oikopleura dioica]
Length = 325
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQ-VREALAKDTGLSVRVVQVWFQNQR 60
+TI + K K F+S G K ++ +RE LA +TGL+ RVVQVWFQNQR
Sbjct: 99 RTILTTEQRKKFKAYFDSG--GEKPSRKIREKLAAETGLTARVVQVWFQNQR 148
>gi|313226340|emb|CBY21484.1| unnamed protein product [Oikopleura dioica]
Length = 482
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQ-VREALAKDTGLSVRVVQVWFQNQR 60
+TI + K K F+S G K ++ +RE LA +TGL+ RVVQVWFQNQR
Sbjct: 256 RTILTTEQRKKFKAYFDSG--GEKPSRKIREKLAAETGLTARVVQVWFQNQR 305
>gi|417414463|gb|JAA53524.1| Putative homeobox protein, partial [Desmodus rotundus]
Length = 3518
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 8/60 (13%)
Query: 9 FQTIRLLNLKVK-LKTSFNSCCPGHKTTQVREA--LAKDTGLSVRVVQVWFQNQRAKMKK 65
F+T ++ NL++K LK+ FN ++T + E L D GL RVVQVWFQN RAK KK
Sbjct: 2952 FRT-QMTNLQLKVLKSCFND----YRTPTMLECEVLGNDIGLPKRVVQVWFQNARAKEKK 3006
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 32 HKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
+ T ++ + +A + GL RVVQVWFQN RA+ +K Q +A
Sbjct: 2668 NPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQFRA 2706
>gi|393214026|gb|EJC99520.1| hypothetical protein FOMMEDRAFT_148693 [Fomitiporia mediterranea
MF3/22]
Length = 490
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPH 93
TT +RE + + GLS R VQVWFQNQR K +K ++A Q + +E P P+
Sbjct: 110 TTAMREEVGRQIGLSARKVQVWFQNQRQKARKESKEAAAQAAAGAAPRESRPPQFSSFPN 169
Query: 94 S 94
+
Sbjct: 170 A 170
>gi|47215984|emb|CAF96386.1| unnamed protein product [Tetraodon nigroviridis]
Length = 353
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR--------KAKQQEGDKSLDKEDSEPHI 88
+RE LA T L VQVWF+N+RAK +K QR K K+ G+ +KED+ P
Sbjct: 96 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAPGEGGSEKEDTPPST 155
Query: 89 KQEPHSEGE-----SEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEE 143
P EG+ S LD SV PV + +L E E
Sbjct: 156 TVIP--EGQQLPPSSSSSPLDAEGSVVRPV----------PLDMDLNVTSAEHSGSESAT 203
Query: 144 EEEEEEEEEEEEEEE 158
E+ + EEE + + E
Sbjct: 204 EDNTDREEESKRQGE 218
>gi|70909343|ref|NP_570935.3| diencephalon/mesencephalon homeobox protein 1 isoform a [Mus
musculus]
gi|81916299|sp|Q91ZK4.1|DMBX1_MOUSE RecName: Full=Diencephalon/mesencephalon homeobox protein 1;
AltName: Full=Diencephalon/mesencephalon-expressed brain
homeobox gene 1 protein; AltName: Full=Orthodenticle
homolog 3; AltName: Full=Paired-like homeobox protein
DMBX1; AltName: Full=Paired-type homeobox Atx
gi|16903551|gb|AAL30508.1|AF421857_1 paired-like homeobox protein DMBX1 [Mus musculus]
gi|18390053|gb|AAL68836.1|AF463513_1 cerebellar-diencephalic-mesencephalic homeobox protein [Mus
musculus]
Length = 381
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+ E
Sbjct: 152 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAE 206
Query: 157 E 157
E
Sbjct: 207 E 207
>gi|70909349|ref|NP_001020738.1| diencephalon/mesencephalon homeobox protein 1 isoform b [Mus
musculus]
gi|16903553|gb|AAL30509.1|AF421858_1 paired-like homeobox protein DMBX1 [Mus musculus]
gi|21902328|gb|AAM78514.1|AF499446_1 PRD class homeobox protein [Mus musculus]
gi|30047398|gb|AAH50912.1| Diencephalon/mesencephalon homeobox 1 [Mus musculus]
gi|148698681|gb|EDL30628.1| diencephalon/mesencephalon homeobox 1, isoform CRA_a [Mus musculus]
gi|148698682|gb|EDL30629.1| diencephalon/mesencephalon homeobox 1, isoform CRA_a [Mus musculus]
Length = 376
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+ E
Sbjct: 147 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAE 201
Query: 157 E 157
E
Sbjct: 202 E 202
>gi|21623544|dbj|BAC00919.1| PaxB [Mus musculus]
Length = 387
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 106 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 157
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+ E
Sbjct: 158 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAE 212
Query: 157 E 157
E
Sbjct: 213 E 213
>gi|18252583|gb|AAL66343.1|AF461039_1 paired-type homeobox Atx [Mus musculus]
Length = 282
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+ E
Sbjct: 152 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAE 206
Query: 157 E 157
E
Sbjct: 207 E 207
>gi|301768198|ref|XP_002919511.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-like
isoform 2 [Ailuropoda melanoleuca]
Length = 382
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSP----VGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEE 151
++E + D + + P GD+ EL + E+ E E++ ++EE
Sbjct: 152 KTEAPTPDTQLETEQPPSLQSGDRPA---------ELHLSLSEQSASESAPEDQPDQEE 201
>gi|281351948|gb|EFB27532.1| hypothetical protein PANDA_008151 [Ailuropoda melanoleuca]
Length = 383
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 101 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 152
Query: 97 ESEWVSLDWRSSVQSP----VGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEE 151
++E + D + + P GD+ EL + E+ E E++ ++EE
Sbjct: 153 KTEAPTPDTQLETEQPPSLQSGDRPA---------ELHLSLSEQSASESAPEDQPDQEE 202
>gi|307194845|gb|EFN77027.1| Zinc finger homeobox protein 4 [Harpegnathos saltator]
Length = 2524
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 39 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDK 77
E +A++ GL RVVQVWFQN RA+ +K Q +A Q +K
Sbjct: 2059 ETIAREVGLKKRVVQVWFQNTRARERKGQFRAHSQVINK 2097
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 39 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGES 98
E L ++ GL RVVQVWFQN RAK KK + A L E S + P E
Sbjct: 2343 EMLGREIGLPKRVVQVWFQNARAKEKKARLAA-------GLPAEGSAVQPHRGPTGPDEC 2395
Query: 99 EWVSLDWRSSVQSPV 113
S+ R S ++P+
Sbjct: 2396 RLCSV--RYSAKTPL 2408
>gi|301768196|ref|XP_002919510.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-like
isoform 1 [Ailuropoda melanoleuca]
Length = 377
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 146
Query: 97 ESEWVSLDWRSSVQSP----VGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEE 151
++E + D + + P GD+ EL + E+ E E++ ++EE
Sbjct: 147 KTEAPTPDTQLETEQPPSLQSGDRPA---------ELHLSLSEQSASESAPEDQPDQEE 196
>gi|426329500|ref|XP_004025778.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 384
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
++E + D + P + S L + E+ E E++ + EE+
Sbjct: 152 KAEAATPDTQLDTDQP---PRLPGSDPPAELHLSLSLSEQSASESAPEDQPDREEDPRAG 208
Query: 157 EE 158
E
Sbjct: 209 AE 210
>gi|25990914|gb|AAN76724.1| Mbx [Mus musculus]
Length = 381
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+
Sbjct: 152 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAG 206
Query: 157 E 157
E
Sbjct: 207 E 207
>gi|291398974|ref|XP_002715168.1| PREDICTED: diencephalon/mesencephalon homeobox 1 isoform 2
[Oryctolagus cuniculus]
Length = 382
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDAEGS--------HGEG 151
Query: 97 ESEWVSLD 104
++E + D
Sbjct: 152 KTEAPTPD 159
>gi|426329498|ref|XP_004025777.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 379
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
++E + D + P + S L + E+ E E++ + EE+
Sbjct: 147 KAEAATPDTQLDTDQP---PRLPGSDPPAELHLSLSLSEQSASESAPEDQPDREEDPRAG 203
Query: 157 EE 158
E
Sbjct: 204 AE 205
>gi|440907315|gb|ELR57475.1| Diencephalon/mesencephalon homeobox protein 1 [Bos grunniens mutus]
Length = 380
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 101 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 152
Query: 97 ESEWVSLDWR----SSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++E + D + P GD EL + E+ E E++ + EE+
Sbjct: 153 KTEAPTPDTQLETDQPPNLPSGDPPA---------ELHLSLSEQSASESAPEDQPDREED 203
Query: 153 EEEEEE 158
+ E
Sbjct: 204 PQAGAE 209
>gi|291398972|ref|XP_002715167.1| PREDICTED: diencephalon/mesencephalon homeobox 1 isoform 1
[Oryctolagus cuniculus]
Length = 377
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E S H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDAEGS--------HGEG 146
Query: 97 ESEWVSLD 104
++E + D
Sbjct: 147 KTEAPTPD 154
>gi|157818253|ref|NP_001101431.1| diencephalon/mesencephalon homeobox 1 [Rattus norvegicus]
gi|149035616|gb|EDL90297.1| diencephalon/mesencephalon homeobox 1 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149035617|gb|EDL90298.1| diencephalon/mesencephalon homeobox 1 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 376
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 146
Query: 97 ESEWVS----LDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEE 152
+ E + L+ P GD EL + E+ E E++ + EE+
Sbjct: 147 KMETPASNTQLEAEQPPSLPSGDPPA---------ELQLSLSEQSASESAPEDQLDREED 197
Query: 153 EEEEE 157
EE
Sbjct: 198 SRAEE 202
>gi|47194703|emb|CAF87132.1| unnamed protein product [Tetraodon nigroviridis]
Length = 244
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR--------KAKQQEGDKSLDKEDSEP 86
+RE LA T L VQVWF+N+RAK +K QR K K+ G+ +KED+ P
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAPGEGGSEKEDTPP 157
>gi|348501013|ref|XP_003438065.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-A-like
[Oreochromis niloticus]
Length = 390
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR--------KAKQQEGDKSLDKEDSEP 86
+RE LA T L VQVWF+N+RAK +K QR K K+ G+ +KED+ P
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEVSGEGGSEKEDTPP 152
>gi|196166497|gb|ACG70807.1| Cdx [Convolutriloba longifissura]
Length = 310
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 41 LAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLD 80
LA GLS R V++WFQN+RAK +K+ RK S D
Sbjct: 205 LAMQVGLSERQVKIWFQNRRAKERKVSRKVPGGGNHSSSD 244
>gi|149574597|ref|XP_001510717.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1-like
[Ornithorhynchus anatinus]
Length = 362
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKE 82
+RE LA T L VQVWF+N+RAK +K QR ++++ K D E
Sbjct: 94 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDTE 139
>gi|334321542|ref|XP_001362949.2| PREDICTED: diencephalon/mesencephalon homeobox protein 1-like
[Monodelphis domestica]
Length = 384
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E H EG
Sbjct: 62 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGG--------HGEG 113
Query: 97 ESEWVSLD 104
++E + D
Sbjct: 114 KAEVPNPD 121
>gi|395530279|ref|XP_003767224.1| PREDICTED: diencephalon/mesencephalon homeobox protein 1
[Sarcophilus harrisii]
Length = 316
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E H EG
Sbjct: 95 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKETEGG--------HGEG 146
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLK--IGYELGFFIQEEEEEEEEEEEEEE 148
+++ + D Q+P + S VL EL + E+ E E++ +
Sbjct: 147 KADVPNPDG----QAPALPDSEQSCVLPGEPSAELHLTLSEQSAGESAPEDQAD 196
>gi|168066030|ref|XP_001784947.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663494|gb|EDQ50255.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 41 LAKDTGLSVRVVQVWFQNQRA--KMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGES 98
LAK+ GL R V VWFQN+RA K K+++R + D + K + E ++++ +GE
Sbjct: 163 LAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLTLDYNRLKSEFEAVLQEKQELQGEM 222
Query: 99 EWVSLDWRSSVQSPVGD 115
E ++ ++S Q GD
Sbjct: 223 ECLTGRLQTSPQLASGD 239
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.305 0.125 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,559,545,153
Number of Sequences: 23463169
Number of extensions: 112744180
Number of successful extensions: 5980579
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 29162
Number of HSP's successfully gapped in prelim test: 10928
Number of HSP's that attempted gapping in prelim test: 4347585
Number of HSP's gapped (non-prelim): 785668
length of query: 159
length of database: 8,064,228,071
effective HSP length: 121
effective length of query: 38
effective length of database: 9,520,151,918
effective search space: 361765772884
effective search space used: 361765772884
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 71 (32.0 bits)