BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10851
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60564|LMX1B_MESAU LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus
auratus GN=LMX1B PE=2 SV=1
Length = 369
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 214 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 247
>sp|O88609|LMX1B_MOUSE LIM homeobox transcription factor 1-beta OS=Mus musculus GN=Lmx1b
PE=2 SV=2
Length = 372
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B
PE=1 SV=2
Length = 379
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 224 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 257
>sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gallus GN=LMX1B PE=2 SV=1
Length = 377
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+ R+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 256
>sp|Q8UVR3|LMX1B_XENLA LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis
GN=lmx1b.1 PE=2 SV=1
Length = 400
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+VRE LA +TGLSVRVVQVWFQNQRAK+KK+ R+
Sbjct: 246 KVRETLAAETGLSVRVVQVWFQNQRAKIKKLARR 279
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
PE=2 SV=1
Length = 382
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
PE=2 SV=1
Length = 382
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
+VRE LA +TGLSVRVVQVWFQNQRAKMKK+
Sbjct: 223 KVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N VRE L+ +TGL +RVVQVWFQN+RAK K+I+R +Q
Sbjct: 425 LKSAYNQ--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQ 475
>sp|P20271|HM14_CAEEL Homeobox protein ceh-14 OS=Caenorhabditis elegans GN=ceh-14 PE=2
SV=3
Length = 351
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE LA +TGL +RVVQVWFQN+RAK K++++ A ++
Sbjct: 208 HVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRR 245
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 157 LKSAYNTS--PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 207
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 175 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 225
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
LK+++N+ VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 172 LKSAYNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 222
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSTETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +Q
Sbjct: 182 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQ 219
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
VRE L+ +TGL +RVVQVWFQN+RAK K++++ A +
Sbjct: 185 HVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRH 222
>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
GN=LHX1 PE=2 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P53411|LHX1_CHICK LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P63007|LHX1_RAT LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P63006|LHX1_MOUSE LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P63008|LHX1_MESAU LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P48742|LHX1_HUMAN LIM/homeobox protein Lhx1 OS=Homo sapiens GN=LHX1 PE=1 SV=2
Length = 406
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P61375|LHX5_MOUSE LIM/homeobox protein Lhx5 OS=Mus musculus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P37137|LHX5_XENLA LIM/homeobox protein Lhx5 OS=Xenopus laevis GN=lhx5 PE=1 SV=2
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|Q9H2C1|LHX5_HUMAN LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1
Length = 402
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 205 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 238
>sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
Length = 405
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 205 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 238
>sp|P52889|LHX5_DANRE LIM/homeobox protein Lhx5 OS=Danio rerio GN=lhx5 PE=2 SV=1
Length = 399
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA++TGL++RV+QVWFQN+R+K ++++
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMK 239
>sp|P20154|LIN11_CAEEL Protein lin-11 OS=Caenorhabditis elegans GN=lin-11 PE=1 SV=2
Length = 405
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 29/34 (85%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
T +RE LA +TGL++RV+QVWFQN+R+K ++++
Sbjct: 267 TRHIREQLAAETGLNMRVIQVWFQNRRSKERRMK 300
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 8/60 (13%)
Query: 9 FQTIRLLNLKVK-LKTSFNSCCPGHKTTQVREA--LAKDTGLSVRVVQVWFQNQRAKMKK 65
F+T ++ NL++K LK+ FN ++T + E L D GL RVVQVWFQN RAK KK
Sbjct: 2949 FRT-QMTNLQLKVLKSCFND----YRTPTMLECEVLGNDIGLPKRVVQVWFQNARAKEKK 3003
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 32 HKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
+ T ++ + +A + GL RVVQVWFQN RA+ +K Q +A
Sbjct: 2665 NPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQFRA 2703
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EALAKDTGLSVRVVQVWFQNQRAKMKK 65
E L+ L RV+ VWFQN R K +K
Sbjct: 2273 EQLSNLLNLPTRVIVVWFQNARQKARK 2299
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 8/60 (13%)
Query: 9 FQTIRLLNLKVK-LKTSFNSCCPGHKTTQVREA--LAKDTGLSVRVVQVWFQNQRAKMKK 65
F+T ++ NL++K LK+ FN ++T + E L D GL RVVQVWFQN RAK KK
Sbjct: 2957 FRT-QMTNLQLKVLKSCFND----YRTPTMLECEVLGNDIGLPKRVVQVWFQNARAKEKK 3011
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 32 HKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70
+ T ++ + +A + GL RVVQVWFQN RA+ +K Q +A
Sbjct: 2674 NPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQFRA 2712
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EALAKDTGLSVRVVQVWFQNQRAKMKK 65
E L+ L RV+ VWFQN R K +K
Sbjct: 2280 EQLSNLLNLPTRVIVVWFQNARQKARK 2306
>sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus apella GN=PROP1 PE=3
SV=1
Length = 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
RE+LA+DTGLS +QVWFQN+RAK +K +R
Sbjct: 98 ARESLARDTGLSEARIQVWFQNRRAKQRKQER 129
>sp|O75360|PROP1_HUMAN Homeobox protein prophet of Pit-1 OS=Homo sapiens GN=PROP1 PE=1
SV=2
Length = 226
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
RE+LA+DTGLS +QVWFQN+RAK +K +R
Sbjct: 98 ARESLARDTGLSEARIQVWFQNRRAKQRKQER 129
>sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Alouatta belzebul GN=PROP1
PE=3 SV=1
Length = 226
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
RE+LA+DTGLS +QVWFQN+RAK +K +R Q
Sbjct: 98 ARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQ 133
>sp|Q3LU41|PROP1_THEGE Homeobox protein prophet of Pit-1 OS=Theropithecus gelada GN=PROP1
PE=3 SV=1
Length = 226
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
RE+LA+DTGLS +QVWFQN+RAK +K +R
Sbjct: 98 ARESLARDTGLSEARIQVWFQNRRAKQRKQER 129
>sp|P53407|ISL2B_DANRE Insulin gene enhancer protein isl-2b OS=Danio rerio GN=isl2b PE=2
SV=1
Length = 358
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK---IQRKAKQQEGDK 77
L+T +N+ ++E L + TGLS RV++VWFQN+R K KK + ++ +QQ GDK
Sbjct: 206 LRTCYNA--NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSILMKQLQQQHGDK 263
Query: 78 S 78
+
Sbjct: 264 T 264
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ E + D + + P G EL + E+ E E++ + EE+ E
Sbjct: 152 KVEAPASDTQLETEQPPGLPSGDPPA-----ELQLSLSEQSASESAPEDQLDREEDSRAE 206
Query: 157 E 157
E
Sbjct: 207 E 207
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 37 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEG 96
+RE LA T L VQVWF+N+RAK +K QR ++++ K + E S H EG
Sbjct: 100 MRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS--------HGEG 151
Query: 97 ESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
++E + D + + P EL + E+ E E++ + EE+
Sbjct: 152 KAEAPTPDTQLDTEQPPRLPGSDPPA-----ELHLSLSEQSASESAPEDQPDREEDPRAG 206
Query: 157 EE 158
E
Sbjct: 207 AE 208
>sp|Q03014|HHEX_HUMAN Hematopoietically-expressed homeobox protein HHEX OS=Homo sapiens
GN=HHEX PE=1 SV=1
Length = 270
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGE 97
R+ LAK LS R V+ WFQN+RAK ++++++ Q + L+ DS +Q+ SE +
Sbjct: 167 RKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSE-Q 225
Query: 98 SEWVSLDWRSSVQSPV 113
++ SLD SP
Sbjct: 226 NKGASLDSSQCSPSPA 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.125 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,766,379
Number of Sequences: 539616
Number of extensions: 2886201
Number of successful extensions: 177678
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3429
Number of HSP's successfully gapped in prelim test: 796
Number of HSP's that attempted gapping in prelim test: 74700
Number of HSP's gapped (non-prelim): 43131
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)