Query psy10851
Match_columns 159
No_of_seqs 156 out of 1581
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.9 5E-23 1.7E-27 134.0 9.9 70 4-75 5-74 (80)
2 1ig7_A Homeotic protein MSX-1; 99.9 4.6E-23 1.6E-27 126.2 7.7 57 7-65 1-57 (58)
3 2hdd_A Protein (engrailed home 99.9 3.2E-23 1.1E-27 128.3 6.8 59 5-65 2-60 (61)
4 2h1k_A IPF-1, pancreatic and d 99.9 5.2E-23 1.8E-27 128.1 7.7 59 6-66 3-61 (63)
5 2dmq_A LIM/homeobox protein LH 99.9 7.6E-23 2.6E-27 133.1 8.1 63 4-68 5-67 (80)
6 1nk2_P Homeobox protein VND; h 99.9 1.4E-22 4.8E-27 131.0 8.9 64 4-69 7-70 (77)
7 1puf_A HOX-1.7, homeobox prote 99.9 1.8E-22 6.2E-27 130.5 9.3 65 3-69 10-74 (77)
8 2dmt_A Homeobox protein BARH-l 99.9 5.5E-23 1.9E-27 133.8 6.8 62 3-66 14-75 (80)
9 2dms_A Homeobox protein OTX2; 99.9 3.4E-23 1.2E-27 134.8 5.8 62 4-67 5-66 (80)
10 1jgg_A Segmentation protein EV 99.9 1E-22 3.6E-27 125.5 7.6 59 6-66 1-59 (60)
11 2dmu_A Homeobox protein goosec 99.9 1.4E-22 4.9E-27 128.6 8.2 61 4-66 5-65 (70)
12 1bw5_A ISL-1HD, insulin gene e 99.9 5.1E-23 1.7E-27 129.3 6.0 61 4-66 1-61 (66)
13 1zq3_P PRD-4, homeotic bicoid 99.9 1.4E-22 4.8E-27 128.0 8.0 62 6-69 2-63 (68)
14 1fjl_A Paired protein; DNA-bin 99.9 1.7E-22 5.8E-27 131.8 8.6 63 4-68 16-78 (81)
15 1ahd_P Antennapedia protein mu 99.9 9.4E-23 3.2E-27 128.8 6.9 60 6-67 2-61 (68)
16 2vi6_A Homeobox protein nanog; 99.9 3.2E-23 1.1E-27 128.6 4.5 59 6-66 3-61 (62)
17 2cra_A Homeobox protein HOX-B1 99.9 6.7E-23 2.3E-27 130.2 6.1 61 4-66 5-65 (70)
18 2da3_A Alpha-fetoprotein enhan 99.9 9.9E-23 3.4E-27 132.5 6.6 62 3-66 14-75 (80)
19 2e1o_A Homeobox protein PRH; D 99.9 2.2E-22 7.6E-27 127.8 8.1 62 4-67 5-66 (70)
20 1ftt_A TTF-1 HD, thyroid trans 99.9 2.3E-22 7.9E-27 127.0 7.8 60 6-67 2-61 (68)
21 3a01_A Homeodomain-containing 99.9 1.2E-22 4.2E-27 135.8 6.8 66 4-71 15-80 (93)
22 2da1_A Alpha-fetoprotein enhan 99.9 1.2E-22 4.3E-27 128.9 6.5 62 3-66 4-65 (70)
23 2da2_A Alpha-fetoprotein enhan 99.9 1.4E-22 4.8E-27 128.6 6.6 61 4-66 5-65 (70)
24 2l7z_A Homeobox protein HOX-A1 99.9 2.1E-22 7.3E-27 128.9 7.0 61 4-66 5-65 (73)
25 2ecc_A Homeobox and leucine zi 99.9 3.6E-22 1.2E-26 128.0 7.6 60 8-69 5-64 (76)
26 2kt0_A Nanog, homeobox protein 99.9 1.8E-22 6.1E-27 132.5 6.3 62 3-66 19-80 (84)
27 2djn_A Homeobox protein DLX-5; 99.9 1.4E-22 4.8E-27 128.7 5.3 61 4-66 5-65 (70)
28 1uhs_A HOP, homeodomain only p 99.9 5.5E-22 1.9E-26 126.6 8.0 59 7-67 2-61 (72)
29 1yz8_P Pituitary homeobox 2; D 99.9 1.5E-22 5.1E-27 127.9 5.3 62 5-68 2-63 (68)
30 2hi3_A Homeodomain-only protei 99.9 5.8E-22 2E-26 126.8 8.0 59 7-67 3-62 (73)
31 2k40_A Homeobox expressed in E 99.9 3.5E-22 1.2E-26 125.8 6.9 59 6-66 1-59 (67)
32 3rkq_A Homeobox protein NKX-2. 99.9 3.5E-22 1.2E-26 122.1 6.7 57 6-64 2-58 (58)
33 1wh5_A ZF-HD homeobox family p 99.9 9E-23 3.1E-27 132.8 4.0 60 4-65 15-78 (80)
34 3a02_A Homeobox protein arista 99.9 3.2E-22 1.1E-26 123.3 6.1 57 9-67 2-58 (60)
35 1b8i_A Ultrabithorax, protein 99.9 5E-22 1.7E-26 129.6 6.8 60 5-66 19-78 (81)
36 1akh_A Protein (mating-type pr 99.9 4.2E-22 1.4E-26 123.2 6.1 58 5-64 4-61 (61)
37 3a03_A T-cell leukemia homeobo 99.9 7.7E-22 2.6E-26 120.0 7.2 54 11-66 2-55 (56)
38 2ecb_A Zinc fingers and homeob 99.9 4E-22 1.4E-26 131.8 6.1 56 10-67 15-70 (89)
39 2r5y_A Homeotic protein sex co 99.9 7.9E-22 2.7E-26 130.5 6.7 60 5-66 27-86 (88)
40 1b72_B Protein (PBX1); homeodo 99.9 4.6E-22 1.6E-26 131.3 5.6 63 7-71 2-67 (87)
41 1b72_A Protein (homeobox prote 99.9 1.1E-21 3.7E-26 132.1 7.3 62 5-68 33-94 (97)
42 2m0c_A Homeobox protein arista 99.9 1.2E-21 4.3E-26 125.7 7.0 62 4-67 7-68 (75)
43 1puf_B PRE-B-cell leukemia tra 99.8 1.9E-21 6.5E-26 124.4 7.6 60 7-68 2-64 (73)
44 2ly9_A Zinc fingers and homeob 99.8 1.4E-21 4.7E-26 125.3 6.9 59 6-66 6-64 (74)
45 2da4_A Hypothetical protein DK 99.8 1E-21 3.5E-26 127.8 6.2 63 3-66 5-70 (80)
46 1wh7_A ZF-HD homeobox family p 99.8 2.3E-22 7.7E-27 130.8 3.0 59 4-65 15-78 (80)
47 1x2n_A Homeobox protein pknox1 99.8 3.7E-21 1.3E-25 123.0 8.3 61 4-66 5-68 (73)
48 2cuf_A FLJ21616 protein; homeo 99.8 2.4E-21 8.1E-26 130.0 7.5 64 4-69 5-83 (95)
49 2da5_A Zinc fingers and homeob 99.8 2.5E-21 8.6E-26 124.5 7.3 61 5-67 6-66 (75)
50 3nar_A ZHX1, zinc fingers and 99.8 1.3E-21 4.5E-26 131.5 5.7 65 3-69 22-86 (96)
51 1k61_A Mating-type protein alp 99.8 3.7E-21 1.3E-25 118.5 6.8 56 9-66 1-59 (60)
52 2dmn_A Homeobox protein TGIF2L 99.8 7.4E-21 2.5E-25 124.5 7.6 63 4-67 5-69 (83)
53 2dn0_A Zinc fingers and homeob 99.8 2.4E-21 8.2E-26 124.9 5.1 58 7-66 9-66 (76)
54 1du6_A PBX1, homeobox protein 99.8 1.4E-21 4.7E-26 121.9 3.7 59 5-65 2-63 (64)
55 2da6_A Hepatocyte nuclear fact 99.8 2.5E-20 8.7E-25 125.5 9.7 67 4-72 4-91 (102)
56 3nau_A Zinc fingers and homeob 99.8 9.8E-21 3.4E-25 117.5 7.0 54 12-67 10-63 (66)
57 2dmp_A Zinc fingers and homeob 99.8 6.2E-21 2.1E-25 126.5 6.0 57 9-67 16-72 (89)
58 1mnm_C Protein (MAT alpha-2 tr 99.8 1E-20 3.6E-25 124.8 6.8 58 5-64 26-86 (87)
59 1wi3_A DNA-binding protein SAT 99.8 1.7E-20 5.9E-25 116.4 6.8 59 4-64 5-64 (71)
60 1le8_B Mating-type protein alp 99.8 1.6E-20 5.5E-25 122.9 6.5 59 7-67 3-64 (83)
61 2cqx_A LAG1 longevity assuranc 99.8 6.4E-21 2.2E-25 121.6 4.5 59 5-65 7-66 (72)
62 1e3o_C Octamer-binding transcr 99.8 1.8E-20 6E-25 136.8 6.2 61 4-66 99-159 (160)
63 2xsd_C POU domain, class 3, tr 99.8 1.4E-20 4.7E-25 137.9 5.6 62 4-67 97-158 (164)
64 1au7_A Protein PIT-1, GHF-1; c 99.8 2.3E-20 7.8E-25 134.3 6.0 61 4-66 85-145 (146)
65 3d1n_I POU domain, class 6, tr 99.8 3.7E-20 1.3E-24 133.9 6.8 60 4-65 91-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.8 6.3E-20 2.1E-24 115.9 5.3 55 10-66 8-62 (69)
67 1lfb_A Liver transcription fac 99.8 2.5E-20 8.4E-25 125.7 3.3 63 3-67 6-89 (99)
68 3l1p_A POU domain, class 5, tr 99.8 8.1E-20 2.8E-24 132.7 5.8 61 4-66 94-154 (155)
69 2e19_A Transcription factor 8; 99.8 1.4E-19 4.7E-24 112.9 4.8 55 9-65 6-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.8 1.1E-19 3.7E-24 112.9 4.2 50 14-65 8-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.8 2.2E-19 7.7E-24 131.4 5.0 61 5-67 96-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.8 1.1E-18 3.7E-23 109.7 6.2 55 11-67 3-60 (67)
73 2lk2_A Homeobox protein TGIF1; 99.7 2E-16 6.8E-21 104.0 9.3 59 10-70 9-70 (89)
74 1ic8_A Hepatocyte nuclear fact 99.7 1E-17 3.4E-22 125.4 3.2 60 4-65 113-193 (194)
75 2da7_A Zinc finger homeobox pr 99.7 8.1E-17 2.8E-21 100.5 5.9 46 15-62 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.6 3.9E-16 1.3E-20 118.2 5.5 58 3-62 139-217 (221)
77 1mh3_A Maltose binding-A1 home 99.5 2E-15 7E-20 123.3 2.4 56 7-64 366-421 (421)
78 2nzz_A Penetratin conjugated G 99.1 1.3E-11 4.4E-16 67.8 0.8 22 50-71 1-22 (37)
79 2ys9_A Homeobox and leucine zi 96.7 0.0019 6.5E-08 39.8 3.8 44 12-57 12-55 (70)
80 3hug_A RNA polymerase sigma fa 93.8 0.2 6.9E-06 31.8 6.1 50 12-68 37-86 (92)
81 2glo_A Brinker CG9653-PA; prot 92.1 0.27 9.1E-06 28.6 4.5 47 9-58 2-48 (59)
82 1hlv_A CENP-B, major centromer 91.8 0.58 2E-05 31.3 6.5 50 8-62 3-52 (131)
83 2elh_A CG11849-PA, LD40883P; s 91.4 0.53 1.8E-05 29.6 5.6 44 7-57 17-60 (87)
84 2o8x_A Probable RNA polymerase 90.9 0.4 1.4E-05 28.2 4.5 49 11-66 14-62 (70)
85 1s7o_A Hypothetical UPF0122 pr 90.0 0.95 3.3E-05 30.1 6.2 50 11-67 21-70 (113)
86 1iuf_A Centromere ABP1 protein 89.6 0.86 2.9E-05 31.5 5.9 51 7-59 6-60 (144)
87 3mzy_A RNA polymerase sigma-H 89.0 1 3.4E-05 30.6 5.9 50 12-69 109-158 (164)
88 1tc3_C Protein (TC3 transposas 88.7 1 3.5E-05 24.0 4.7 40 12-58 5-44 (51)
89 3c57_A Two component transcrip 88.2 1.2 3.9E-05 28.4 5.4 47 11-65 26-72 (95)
90 1xsv_A Hypothetical UPF0122 pr 88.2 1.4 4.7E-05 29.2 5.9 49 12-67 25-73 (113)
91 1ku3_A Sigma factor SIGA; heli 87.7 1.3 4.4E-05 26.5 5.1 51 11-64 9-59 (73)
92 3lph_A Protein REV; helix-loop 86.3 1.7 5.9E-05 26.5 4.9 38 18-71 18-55 (72)
93 1p4w_A RCSB; solution structur 86.1 3 0.0001 26.9 6.5 47 10-64 32-78 (99)
94 1tty_A Sigma-A, RNA polymerase 85.8 1 3.4E-05 28.2 4.0 51 12-65 18-68 (87)
95 1jko_C HIN recombinase, DNA-in 85.8 0.5 1.7E-05 25.8 2.3 43 12-61 5-47 (52)
96 1je8_A Nitrate/nitrite respons 85.6 1.4 4.6E-05 27.3 4.5 51 8-66 17-67 (82)
97 1fse_A GERE; helix-turn-helix 85.2 1.8 6.1E-05 25.5 4.8 49 9-65 8-56 (74)
98 2p7v_B Sigma-70, RNA polymeras 85.2 0.99 3.4E-05 26.7 3.6 51 12-65 5-55 (68)
99 1rp3_A RNA polymerase sigma fa 84.3 1.9 6.4E-05 31.2 5.4 49 12-67 187-235 (239)
100 2x7l_M HIV REV; nuclear export 84.2 1.3 4.3E-05 29.6 3.9 39 18-72 15-53 (115)
101 1or7_A Sigma-24, RNA polymeras 84.1 2 6.9E-05 30.1 5.4 47 13-66 141-187 (194)
102 2rnj_A Response regulator prot 84.0 1 3.6E-05 28.3 3.4 48 10-65 27-74 (91)
103 1x3u_A Transcriptional regulat 82.8 1.4 4.9E-05 26.5 3.6 46 12-65 16-61 (79)
104 3ulq_B Transcriptional regulat 81.7 4 0.00014 25.7 5.6 46 10-63 27-72 (90)
105 2q24_A Putative TETR family tr 79.4 1 3.5E-05 31.4 2.3 42 18-63 21-62 (194)
106 2lv7_A Calcium-binding protein 77.7 10 0.00036 24.0 6.7 50 7-57 24-79 (100)
107 2jn6_A Protein CGL2762, transp 75.3 5 0.00017 25.2 4.6 41 10-57 3-45 (97)
108 2q0o_A Probable transcriptiona 75.2 6 0.0002 29.1 5.7 47 10-64 173-219 (236)
109 2rn7_A IS629 ORFA; helix, all 75.2 6.9 0.00024 25.0 5.4 48 10-57 4-52 (108)
110 3t72_q RNA polymerase sigma fa 75.0 8.1 0.00028 24.9 5.6 54 12-68 19-72 (99)
111 2q1z_A RPOE, ECF SIGE; ECF sig 73.3 1.2 4E-05 31.2 1.2 28 39-66 155-182 (184)
112 2jpc_A SSRB; DNA binding prote 73.3 2.8 9.4E-05 23.8 2.7 29 38-66 16-44 (61)
113 1u78_A TC3 transposase, transp 72.0 6.5 0.00022 25.9 4.8 41 11-58 5-45 (141)
114 2x48_A CAG38821; archeal virus 71.2 5.5 0.00019 22.0 3.6 39 12-57 13-53 (55)
115 1l3l_A Transcriptional activat 70.2 8.9 0.0003 28.1 5.5 47 10-64 171-217 (234)
116 3f1b_A TETR-like transcription 69.7 1.2 4.2E-05 30.9 0.6 45 18-65 20-64 (203)
117 2qwt_A Transcriptional regulat 69.6 0.86 2.9E-05 32.1 -0.2 40 18-61 19-58 (196)
118 3clo_A Transcriptional regulat 69.6 7.3 0.00025 29.1 5.0 48 11-66 196-243 (258)
119 2qib_A TETR-family transcripti 68.8 1.4 4.6E-05 31.9 0.7 62 1-65 1-63 (231)
120 1fi6_A EH domain protein REPS1 67.2 8.7 0.0003 23.7 4.3 45 12-57 2-50 (92)
121 3i5g_B Myosin regulatory light 66.2 15 0.00051 24.9 5.7 42 8-50 5-50 (153)
122 3gzi_A Transcriptional regulat 65.7 3.6 0.00012 28.8 2.5 42 18-62 23-64 (218)
123 3g7r_A Putative transcriptiona 64.6 3.6 0.00012 29.3 2.3 43 18-63 41-83 (221)
124 3on2_A Probable transcriptiona 64.0 1.8 6.2E-05 29.8 0.6 43 18-63 18-60 (199)
125 3qp6_A CVIR transcriptional re 63.9 16 0.00055 27.5 6.0 48 10-65 195-242 (265)
126 1irz_A ARR10-B; helix-turn-hel 63.4 21 0.00072 21.2 5.6 59 6-65 3-62 (64)
127 2iu5_A DHAS, YCEG, HTH-type dh 63.2 3.5 0.00012 28.6 2.0 64 1-67 1-65 (195)
128 3vp5_A Transcriptional regulat 63.2 2.1 7.1E-05 29.9 0.7 61 1-64 1-61 (189)
129 1pdn_C Protein (PRD paired); p 63.2 16 0.00054 23.3 5.2 41 11-58 16-56 (128)
130 2hin_A GP39, repressor protein 61.8 5 0.00017 24.4 2.2 23 38-60 13-35 (71)
131 3bd1_A CRO protein; transcript 61.3 3.8 0.00013 24.6 1.7 23 38-60 14-36 (79)
132 3nrg_A TETR family transcripti 60.5 1.7 5.9E-05 30.5 -0.1 45 18-65 19-63 (217)
133 2xi8_A Putative transcription 60.5 3.7 0.00013 23.2 1.4 23 38-60 17-39 (66)
134 2lfw_A PHYR sigma-like domain; 60.4 5 0.00017 27.5 2.3 47 12-65 93-139 (157)
135 2qtq_A Transcriptional regulat 60.2 6.4 0.00022 27.3 2.9 44 18-64 22-65 (213)
136 2k27_A Paired box protein PAX- 59.8 14 0.00048 25.2 4.6 41 11-58 24-64 (159)
137 2r1j_L Repressor protein C2; p 59.7 4 0.00014 23.2 1.5 24 38-61 21-44 (68)
138 3szt_A QCSR, quorum-sensing co 58.2 20 0.00068 26.3 5.5 47 9-63 172-218 (237)
139 2rek_A Putative TETR-family tr 58.0 2 6.8E-05 30.0 -0.1 41 18-62 22-62 (199)
140 1mij_A Protein prospero; homeo 57.8 12 0.00042 25.8 3.8 54 11-66 2-58 (152)
141 1k78_A Paired box protein PAX5 57.6 22 0.00076 23.7 5.3 41 11-58 31-71 (149)
142 2qko_A Possible transcriptiona 57.3 4.4 0.00015 28.5 1.6 48 18-68 34-81 (215)
143 1zug_A Phage 434 CRO protein; 56.9 4.4 0.00015 23.3 1.4 24 38-61 19-42 (71)
144 1l0o_C Sigma factor; bergerat 56.5 2.3 7.9E-05 30.7 0.0 33 32-64 211-243 (243)
145 3fmy_A HTH-type transcriptiona 56.4 12 0.0004 22.1 3.3 41 11-60 9-49 (73)
146 3kz9_A SMCR; transcriptional r 56.4 5.2 0.00018 27.5 1.9 43 18-63 23-65 (206)
147 2hxo_A Putative TETR-family tr 56.0 9.3 0.00032 27.9 3.3 57 7-66 10-67 (237)
148 2hku_A A putative transcriptio 55.8 7.1 0.00024 27.4 2.5 43 18-64 26-68 (215)
149 3bs3_A Putative DNA-binding pr 55.5 5.2 0.00018 23.4 1.5 23 38-60 26-48 (76)
150 3c3w_A Two component transcrip 55.0 30 0.001 24.6 5.9 45 11-63 148-192 (225)
151 1c07_A Protein (epidermal grow 54.4 16 0.00055 22.6 3.9 45 12-57 3-51 (95)
152 1t33_A Putative transcriptiona 54.1 2.9 9.9E-05 29.6 0.2 44 18-65 18-61 (224)
153 1adr_A P22 C2 repressor; trans 54.0 5.6 0.00019 23.2 1.5 24 38-61 21-44 (76)
154 3j21_k Acidic ribosomal protei 53.7 2.7 9.4E-05 33.4 0.0 10 13-22 169-178 (339)
155 1etf_B REV peptide; complex (R 53.4 12 0.00041 18.2 2.3 15 57-71 7-21 (26)
156 3omt_A Uncharacterized protein 53.2 6 0.00021 23.1 1.5 23 38-60 24-46 (73)
157 4aci_A HTH-type transcriptiona 53.1 3.3 0.00011 28.4 0.4 43 18-63 20-62 (191)
158 2b5a_A C.BCLI; helix-turn-heli 52.8 6 0.0002 23.2 1.5 23 38-60 26-48 (77)
159 1r69_A Repressor protein CI; g 52.3 6 0.00021 22.5 1.4 24 38-61 17-40 (69)
160 3o9x_A Uncharacterized HTH-typ 52.1 13 0.00044 24.6 3.2 40 12-60 70-109 (133)
161 3kz3_A Repressor protein CI; f 50.8 6.6 0.00023 23.5 1.5 24 38-61 28-51 (80)
162 2g7l_A TETR-family transcripti 50.8 9.2 0.00031 28.2 2.5 56 9-67 15-71 (243)
163 2pmy_A RAS and EF-hand domain- 50.7 13 0.00045 22.6 2.9 46 11-57 19-68 (91)
164 2fq4_A Transcriptional regulat 50.6 5.2 0.00018 27.7 1.1 44 18-64 18-61 (192)
165 2zcx_A SCO7815, TETR-family tr 49.9 10 0.00034 27.4 2.6 45 18-65 29-73 (231)
166 3b7h_A Prophage LP1 protein 11 49.8 7 0.00024 22.9 1.5 23 38-60 23-45 (78)
167 1dtl_A Cardiac troponin C; hel 49.6 39 0.0013 22.0 5.5 50 6-57 5-62 (161)
168 2wiu_B HTH-type transcriptiona 49.6 9.6 0.00033 22.9 2.1 24 38-61 28-51 (88)
169 2k27_A Paired box protein PAX- 49.4 48 0.0017 22.3 6.0 46 10-57 81-133 (159)
170 2kpj_A SOS-response transcript 49.4 7 0.00024 24.2 1.5 24 38-61 25-48 (94)
171 2lmd_A Prospero homeobox prote 49.0 17 0.00059 25.6 3.5 55 10-66 14-71 (174)
172 2a6c_A Helix-turn-helix motif; 48.8 8.3 0.00028 23.3 1.7 23 38-60 34-56 (83)
173 1y7y_A C.AHDI; helix-turn-heli 48.7 7.6 0.00026 22.4 1.5 23 38-60 29-51 (74)
174 2rae_A Transcriptional regulat 48.4 15 0.00052 25.3 3.3 41 18-61 23-63 (207)
175 1j9i_A GPNU1 DBD;, terminase s 48.2 11 0.00039 22.0 2.2 20 38-57 5-24 (68)
176 2np5_A Transcriptional regulat 47.8 6.2 0.00021 27.6 1.1 49 13-64 9-58 (203)
177 1l9z_H Sigma factor SIGA; heli 47.3 38 0.0013 27.7 5.9 51 12-65 375-425 (438)
178 3jsj_A Putative TETR-family tr 47.2 12 0.00041 25.5 2.6 44 18-65 15-58 (190)
179 1j7q_A CAVP, calcium vector pr 47.2 41 0.0014 19.6 5.3 46 9-56 4-59 (86)
180 1rzs_A Antirepressor, regulato 47.1 8.4 0.00029 22.1 1.5 19 38-56 13-31 (61)
181 1a04_A Nitrate/nitrite respons 46.7 40 0.0014 23.5 5.4 46 11-64 153-198 (215)
182 2ict_A Antitoxin HIGA; helix-t 46.0 9.1 0.00031 23.6 1.6 23 38-60 24-46 (94)
183 3fiw_A Putative TETR-family tr 45.3 12 0.0004 26.8 2.3 58 7-67 19-77 (211)
184 3j21_k Acidic ribosomal protei 44.7 4.6 0.00016 32.1 0.0 9 39-47 174-182 (339)
185 3cwr_A Transcriptional regulat 44.4 6.9 0.00023 26.9 0.9 48 18-68 23-70 (208)
186 3nxc_A HTH-type protein SLMA; 43.7 14 0.00046 25.5 2.4 38 21-61 34-71 (212)
187 1pdn_C Protein (PRD paired); p 43.5 43 0.0015 21.1 4.8 46 11-58 74-126 (128)
188 2k9q_A Uncharacterized protein 43.2 9.6 0.00033 22.5 1.3 23 38-60 18-40 (77)
189 2ef8_A C.ECOT38IS, putative tr 43.1 11 0.00036 22.4 1.5 23 38-60 26-48 (84)
190 2hxi_A Putative transcriptiona 42.9 16 0.00055 26.7 2.8 53 9-64 25-78 (241)
191 1u78_A TC3 transposase, transp 42.7 44 0.0015 21.6 4.8 45 11-61 59-105 (141)
192 3lwj_A Putative TETR-family tr 42.6 7.7 0.00026 26.7 0.9 43 18-63 18-60 (202)
193 3vib_A MTRR; helix-turn-helix 42.5 11 0.00037 26.3 1.7 45 18-65 16-60 (210)
194 3dcf_A Transcriptional regulat 42.0 10 0.00035 26.3 1.5 42 18-62 37-78 (218)
195 3ppb_A Putative TETR family tr 41.9 17 0.00058 24.5 2.6 43 18-63 15-57 (195)
196 3bni_A Putative TETR-family tr 41.7 8.1 0.00028 27.6 1.0 41 18-61 49-89 (229)
197 3knw_A Putative transcriptiona 41.3 9.6 0.00033 26.3 1.3 42 18-62 20-61 (212)
198 2oi8_A Putative regulatory pro 41.2 10 0.00035 27.0 1.4 43 18-63 22-64 (216)
199 3f6w_A XRE-family like protein 41.1 12 0.0004 22.3 1.5 23 38-60 30-52 (83)
200 3lsg_A Two-component response 40.6 19 0.00066 22.5 2.6 25 35-59 19-43 (103)
201 1eh2_A EPS15; calcium binding, 40.2 65 0.0022 20.5 5.2 45 11-56 7-54 (106)
202 2a6h_F RNA polymerase sigma fa 40.1 35 0.0012 27.6 4.6 51 12-65 360-410 (423)
203 2dg8_A Putative TETR-family tr 40.0 14 0.00048 25.3 2.0 44 18-64 15-58 (193)
204 1zk8_A Transcriptional regulat 39.9 7.8 0.00027 26.3 0.6 44 18-64 14-57 (183)
205 2jml_A DNA binding domain/tran 39.9 13 0.00044 22.6 1.6 19 38-56 8-26 (81)
206 3f0c_A TETR-molecule A, transc 39.9 15 0.00051 25.4 2.1 43 18-63 17-59 (216)
207 2lhi_A Calmodulin, serine/thre 39.7 34 0.0012 23.5 4.0 40 10-50 2-45 (176)
208 2g7g_A RHA04620, putative tran 39.5 16 0.00053 26.1 2.2 52 10-66 8-60 (213)
209 3fia_A Intersectin-1; EH 1 dom 39.3 45 0.0015 22.2 4.3 46 9-55 23-72 (121)
210 2of7_A Putative TETR-family tr 39.1 5.9 0.0002 29.1 -0.2 43 18-63 54-96 (260)
211 3t76_A VANU, transcriptional r 39.0 12 0.00043 23.3 1.4 23 38-60 40-62 (88)
212 2iu1_A EIF5, eukaryotic transl 38.8 4.8 0.00017 29.7 -0.7 12 47-58 115-126 (208)
213 3ccy_A Putative TETR-family tr 38.8 24 0.00084 24.2 3.1 43 18-63 20-62 (203)
214 1lmb_3 Protein (lambda repress 38.7 13 0.00045 22.6 1.5 23 38-60 33-55 (92)
215 2ktg_A Calmodulin, putative; e 38.6 54 0.0018 18.9 4.4 47 10-57 5-57 (85)
216 3c2b_A Transcriptional regulat 38.5 10 0.00036 26.4 1.1 48 18-68 21-68 (221)
217 3he0_A Transcriptional regulat 38.0 21 0.00071 24.2 2.6 46 17-65 16-61 (196)
218 3s8q_A R-M controller protein; 37.9 13 0.00046 22.0 1.4 23 38-60 27-49 (82)
219 1k78_A Paired box protein PAX5 37.6 87 0.003 20.6 6.7 49 10-60 88-143 (149)
220 3qq6_A HTH-type transcriptiona 37.6 14 0.00047 22.0 1.4 21 38-58 26-46 (78)
221 2pij_A Prophage PFL 6 CRO; tra 37.3 16 0.00054 20.8 1.6 20 38-57 16-35 (67)
222 1ui5_A A-factor receptor homol 37.2 26 0.0009 24.5 3.1 43 18-63 15-57 (215)
223 2y2z_A SIM16, SIMR, putative r 37.1 19 0.00065 26.9 2.4 55 12-69 26-81 (267)
224 2jrt_A Uncharacterized protein 37.0 47 0.0016 21.1 4.0 40 10-56 30-70 (95)
225 2l49_A C protein; P2 bacteriop 37.0 14 0.00047 22.8 1.4 24 38-61 20-43 (99)
226 1uxc_A FRUR (1-57), fructose r 36.8 17 0.00058 21.3 1.7 23 38-60 3-25 (65)
227 3v6g_A Probable transcriptiona 36.6 21 0.00073 25.1 2.5 41 18-61 20-60 (208)
228 3bdn_A Lambda repressor; repre 36.3 16 0.00056 26.4 1.9 24 37-60 32-55 (236)
229 1x57_A Endothelial differentia 36.3 15 0.00052 22.3 1.5 23 38-60 29-51 (91)
230 1yio_A Response regulatory pro 36.2 62 0.0021 22.2 5.0 45 12-64 142-186 (208)
231 1pb6_A Hypothetical transcript 35.8 9.3 0.00032 26.4 0.5 45 18-65 24-68 (212)
232 2v57_A TETR family transcripti 35.7 28 0.00095 23.5 3.0 31 34-64 31-61 (190)
233 2opo_A Polcalcin CHE A 3; calc 35.7 44 0.0015 19.4 3.6 46 11-57 3-53 (86)
234 2iai_A Putative transcriptiona 35.4 18 0.00062 25.7 2.0 44 18-64 36-79 (230)
235 2guh_A Putative TETR-family tr 35.4 10 0.00034 27.0 0.6 44 18-64 45-88 (214)
236 3g1o_A Transcriptional regulat 34.8 14 0.00048 26.7 1.3 44 18-64 49-92 (255)
237 1y66_A Engrailed homeodomain; 34.7 7.5 0.00026 21.3 -0.2 43 14-58 5-47 (52)
238 2kvr_A Ubiquitin carboxyl-term 34.5 7.4 0.00025 26.5 -0.3 24 37-60 71-94 (130)
239 3bru_A Regulatory protein, TET 34.4 22 0.00074 24.7 2.3 42 18-62 36-77 (222)
240 3q0w_A HTH-type transcriptiona 34.2 13 0.00044 26.6 1.0 45 18-65 50-94 (236)
241 3dew_A Transcriptional regulat 33.7 15 0.0005 25.1 1.2 46 18-66 14-59 (206)
242 1qv0_A Obelin, OBL; photoprote 33.7 96 0.0033 20.8 5.6 47 3-50 3-59 (195)
243 1avs_A Troponin C; muscle cont 33.6 67 0.0023 18.9 4.3 45 12-57 13-63 (90)
244 2ewt_A BLDD, putative DNA-bind 33.5 19 0.00063 20.5 1.5 23 38-60 24-48 (71)
245 2w53_A Repressor, SMet; antibi 33.2 28 0.00094 24.3 2.7 44 18-64 17-60 (219)
246 2ppx_A AGR_C_3184P, uncharacte 33.1 19 0.00064 22.5 1.5 23 38-60 46-68 (99)
247 3op9_A PLI0006 protein; struct 33.1 18 0.00063 23.0 1.6 23 38-60 25-47 (114)
248 2v79_A DNA replication protein 32.5 80 0.0027 21.2 4.8 44 12-60 29-76 (135)
249 2ibd_A Possible transcriptiona 32.3 14 0.00047 25.7 0.9 43 18-63 20-62 (204)
250 2ofy_A Putative XRE-family tra 32.1 19 0.00064 21.5 1.4 24 37-60 29-52 (86)
251 2joj_A Centrin protein; N-term 32.1 45 0.0016 18.8 3.2 43 13-56 1-49 (77)
252 2hyj_A Putative TETR-family tr 31.8 8.8 0.0003 26.8 -0.3 44 18-64 18-61 (200)
253 2zb9_A Putative transcriptiona 31.7 15 0.00052 25.5 1.0 45 18-65 29-73 (214)
254 2i10_A Putative TETR transcrip 31.7 48 0.0017 22.8 3.7 45 18-65 17-61 (202)
255 1neq_A DNA-binding protein NER 31.6 23 0.00079 21.2 1.7 21 38-58 25-45 (74)
256 3rd3_A Probable transcriptiona 31.5 16 0.00055 24.7 1.1 42 18-62 16-57 (197)
257 2kgr_A Intersectin-1; structur 31.5 68 0.0023 20.3 4.2 47 10-57 5-55 (111)
258 2jpf_A Hypothetical protein; a 31.2 14 0.00049 23.7 0.7 12 51-62 53-64 (127)
259 2opt_A Actii protein; helical 31.2 38 0.0013 24.6 3.2 57 10-69 3-60 (234)
260 3i5g_C Myosin catalytic light 30.9 44 0.0015 22.6 3.3 38 12-50 2-45 (159)
261 1p2f_A Response regulator; DRR 30.9 93 0.0032 21.5 5.3 49 11-63 144-195 (220)
262 3oou_A LIN2118 protein; protei 30.9 29 0.001 21.8 2.3 25 35-59 21-45 (108)
263 2np3_A Putative TETR-family re 30.7 11 0.00039 26.2 0.2 41 18-61 36-76 (212)
264 3mkl_A HTH-type transcriptiona 30.6 27 0.00094 22.5 2.1 38 18-58 9-46 (120)
265 3frq_A Repressor protein MPHR( 30.3 29 0.00098 23.6 2.3 44 18-64 14-57 (195)
266 3aqt_A Bacterial regulatory pr 30.2 8.5 0.00029 27.9 -0.6 45 18-65 52-96 (245)
267 3col_A Putative transcription 30.2 15 0.00051 24.8 0.7 44 18-64 16-59 (196)
268 3b81_A Transcriptional regulat 30.0 12 0.00042 25.6 0.2 44 18-64 17-60 (203)
269 2id3_A Putative transcriptiona 29.8 11 0.00037 26.8 -0.1 49 18-69 46-94 (225)
270 3bqz_B HTH-type transcriptiona 29.8 31 0.0011 23.2 2.4 43 18-63 8-50 (194)
271 2ovk_B RLC, myosin regulatory 29.8 83 0.0028 20.2 4.5 49 8-57 5-59 (153)
272 2dg7_A Putative transcriptiona 29.7 21 0.00073 24.3 1.5 41 18-61 13-53 (195)
273 3mlf_A Transcriptional regulat 29.6 23 0.00079 22.7 1.6 23 38-60 39-61 (111)
274 3e7q_A Transcriptional regulat 29.4 4.2 0.00015 28.2 -2.3 44 18-64 20-63 (215)
275 3mvp_A TETR/ACRR transcription 29.3 27 0.00094 23.9 2.1 44 18-64 32-75 (217)
276 1ug2_A 2610100B20RIK gene prod 29.2 94 0.0032 19.8 4.3 44 11-57 34-78 (95)
277 3ljl_A Transcriptional regulat 29.0 7.6 0.00026 26.0 -1.0 45 18-65 20-64 (156)
278 2gwr_A DNA-binding response re 28.9 1.2E+02 0.0042 21.3 5.7 49 11-63 152-205 (238)
279 2vz4_A Tipal, HTH-type transcr 28.8 32 0.0011 22.0 2.2 19 38-56 4-22 (108)
280 1r8d_A Transcription activator 28.8 32 0.0011 22.0 2.2 19 38-56 5-23 (109)
281 3cec_A Putative antidote prote 28.7 24 0.00081 22.0 1.5 23 38-60 34-56 (104)
282 2mys_B Myosin; muscle protein, 28.6 1.2E+02 0.0042 19.7 5.5 46 12-58 18-70 (166)
283 2l8n_A Transcriptional repress 28.6 27 0.00091 20.6 1.6 23 37-59 11-33 (67)
284 1b0n_A Protein (SINR protein); 28.5 24 0.00081 22.1 1.5 21 38-58 17-37 (111)
285 3qrx_A Centrin; calcium-bindin 28.5 1E+02 0.0035 20.0 4.9 49 7-56 16-70 (169)
286 3oio_A Transcriptional regulat 28.3 33 0.0011 21.7 2.2 27 32-58 20-46 (113)
287 3mn2_A Probable ARAC family tr 28.1 35 0.0012 21.4 2.3 24 36-59 19-42 (108)
288 2zcm_A Biofilm operon icaabcd 28.1 34 0.0012 23.1 2.4 45 18-65 13-57 (192)
289 3ivp_A Putative transposon-rel 28.1 23 0.0008 23.0 1.4 23 38-60 28-50 (126)
290 2pz9_A Putative regulatory pro 28.0 17 0.00057 25.8 0.7 46 18-66 36-81 (226)
291 3eus_A DNA-binding protein; st 27.9 26 0.00089 21.1 1.5 23 38-60 30-52 (86)
292 3qbm_A TETR transcriptional re 27.9 28 0.00096 23.5 1.9 43 18-63 13-55 (199)
293 3npi_A TETR family regulatory 27.7 22 0.00075 25.6 1.3 52 12-66 17-69 (251)
294 3qkx_A Uncharacterized HTH-typ 27.5 37 0.0013 22.6 2.5 44 18-64 14-57 (188)
295 2wui_A MEXZ, transcriptional r 27.5 35 0.0012 23.6 2.4 47 18-67 17-63 (210)
296 3g5g_A Regulatory protein; tra 27.5 26 0.00088 22.0 1.5 23 38-60 44-66 (99)
297 2eby_A Putative HTH-type trans 27.2 26 0.00088 22.2 1.5 23 38-60 27-49 (113)
298 3vk0_A NHTF, transcriptional r 27.1 23 0.0008 22.6 1.2 23 38-60 37-59 (114)
299 3cjd_A Transcriptional regulat 26.8 16 0.00054 25.4 0.4 44 18-64 18-61 (198)
300 2yve_A Transcriptional regulat 26.8 39 0.0013 22.9 2.5 45 18-65 10-54 (185)
301 2jvl_A TRMBF1; coactivator, he 26.8 25 0.00085 22.4 1.3 23 38-60 52-74 (107)
302 2cqq_A RSGI RUH-037, DNAJ homo 26.8 1.1E+02 0.0036 18.3 5.2 44 9-54 7-50 (72)
303 2cw1_A SN4M; lambda CRO fold, 26.3 27 0.00093 20.5 1.3 20 37-56 15-34 (65)
304 3fwb_A Cell division control p 26.3 1.3E+02 0.0045 19.2 5.5 47 9-56 13-65 (161)
305 3s5r_A Transcriptional regulat 26.1 24 0.00082 24.3 1.2 44 18-64 16-59 (216)
306 1sgm_A Putative HTH-type trans 26.1 38 0.0013 22.6 2.3 41 18-61 12-53 (191)
307 1iq3_A Ralbp1-interacting prot 25.9 21 0.00074 22.9 0.9 48 9-57 12-63 (110)
308 3klo_A Transcriptional regulat 25.9 60 0.002 22.8 3.4 44 12-63 159-202 (225)
309 2gen_A Probable transcriptiona 25.7 52 0.0018 22.4 3.0 43 18-63 13-55 (197)
310 3o60_A LIN0861 protein; PSI, M 25.6 20 0.00069 24.9 0.7 43 18-63 25-68 (185)
311 2vn2_A DNAD, chromosome replic 25.5 1.2E+02 0.0039 19.9 4.6 44 10-57 27-73 (128)
312 2f07_A YVDT; helix-turn-helix, 25.4 16 0.00056 25.2 0.2 41 18-61 16-56 (197)
313 3kkd_A Transcriptional regulat 25.3 28 0.00095 24.6 1.5 43 18-63 41-83 (237)
314 3f52_A CLP gene regulator (CLG 25.3 29 0.001 22.1 1.5 23 38-60 44-66 (117)
315 2ao9_A Phage protein; structur 25.1 60 0.002 22.7 3.1 49 10-58 21-71 (155)
316 4hku_A LMO2814 protein, TETR t 25.0 52 0.0018 22.1 2.9 50 12-64 6-56 (178)
317 3lfp_A CSP231I C protein; tran 24.7 33 0.0011 21.1 1.6 23 38-60 17-43 (98)
318 3lhq_A Acrab operon repressor 24.6 40 0.0014 23.0 2.2 42 18-62 20-61 (220)
319 3vpr_A Transcriptional regulat 24.5 47 0.0016 22.4 2.5 43 18-63 9-51 (190)
320 3i9v_2 NADH-quinone oxidoreduc 24.5 92 0.0032 22.1 4.1 35 16-52 26-60 (181)
321 3hh0_A Transcriptional regulat 24.5 41 0.0014 22.9 2.2 19 38-56 7-25 (146)
322 2d6y_A Putative TETR family re 24.4 43 0.0015 23.1 2.4 45 18-65 14-58 (202)
323 3on4_A Transcriptional regulat 24.4 31 0.0011 23.0 1.6 44 18-64 16-59 (191)
324 1q06_A Transcriptional regulat 24.3 42 0.0014 22.5 2.2 19 38-56 3-21 (135)
325 1jhf_A LEXA repressor; LEXA SO 24.3 73 0.0025 22.4 3.6 41 12-57 3-48 (202)
326 3egq_A TETR family transcripti 24.3 34 0.0012 22.6 1.7 45 18-65 10-54 (170)
327 3u0k_A Rcamp; fluorescent prot 24.2 1.2E+02 0.0041 24.9 5.1 47 9-56 292-344 (440)
328 3gp4_A Transcriptional regulat 24.1 41 0.0014 22.8 2.1 19 38-56 5-23 (142)
329 2o7t_A Transcriptional regulat 24.0 37 0.0013 23.1 1.9 41 18-61 14-54 (199)
330 2xdn_A HTH-type transcriptiona 23.9 53 0.0018 22.5 2.8 45 18-65 17-61 (210)
331 3dpj_A Transcription regulator 23.7 50 0.0017 22.2 2.6 45 18-65 14-58 (194)
332 3him_A Probable transcriptiona 23.6 32 0.0011 23.3 1.5 44 18-64 22-65 (211)
333 3crj_A Transcription regulator 23.5 22 0.00077 24.5 0.7 44 18-64 20-63 (199)
334 3trb_A Virulence-associated pr 23.0 35 0.0012 21.7 1.5 23 38-60 30-52 (104)
335 1wdc_B Scallop myosin; calcium 22.8 1.6E+02 0.0053 18.9 5.6 47 11-58 10-62 (156)
336 2g7s_A Transcriptional regulat 22.8 38 0.0013 22.6 1.7 42 18-62 14-55 (194)
337 2fd5_A Transcriptional regulat 22.7 47 0.0016 22.1 2.2 45 18-65 13-57 (180)
338 1aih_A HP1 integrase; DNA inte 22.6 1.7E+02 0.0059 19.3 5.7 43 7-51 1-43 (170)
339 2fjr_A Repressor protein CI; g 22.5 35 0.0012 23.7 1.5 25 37-61 22-46 (189)
340 2hyt_A TETR-family transcripti 22.5 69 0.0024 21.7 3.1 43 18-63 18-60 (197)
341 1ys7_A Transcriptional regulat 22.5 1.6E+02 0.0055 20.4 5.2 50 11-64 158-212 (233)
342 2dk5_A DNA-directed RNA polyme 22.3 47 0.0016 20.8 2.0 42 11-56 16-57 (91)
343 2zvk_U DNA polymerase ETA, pro 22.2 40 0.0014 16.1 1.2 19 6-28 1-19 (26)
344 3gpv_A Transcriptional regulat 22.1 49 0.0017 22.6 2.2 20 37-56 18-37 (148)
345 2pjp_A Selenocysteine-specific 22.1 61 0.0021 21.0 2.6 42 13-57 1-42 (121)
346 3kxa_A NGO0477 protein, putati 21.6 38 0.0013 22.8 1.5 23 38-60 84-106 (141)
347 1xwr_A Regulatory protein CII; 21.4 53 0.0018 21.0 2.1 18 38-55 26-43 (97)
348 3pas_A TETR family transcripti 21.1 47 0.0016 22.1 1.9 44 18-64 14-57 (195)
349 1vi0_A Transcriptional regulat 20.8 42 0.0014 23.2 1.7 44 18-64 14-57 (206)
350 1tuz_A Diacylglycerol kinase a 20.3 45 0.0015 22.1 1.6 26 32-57 7-32 (118)
351 1bl0_A Protein (multiple antib 20.3 58 0.002 21.1 2.2 41 15-58 10-50 (129)
352 2kn2_A Calmodulin; S MAPK phos 20.1 1.4E+02 0.0048 17.3 4.2 44 13-57 3-52 (92)
353 3e7l_A Transcriptional regulat 20.1 1.2E+02 0.004 17.1 3.3 33 18-56 21-53 (63)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=5e-23 Score=134.01 Aligned_cols=70 Identities=26% Similarity=0.261 Sum_probs=63.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHHHhhcC
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEG 75 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~~~~~~ 75 (159)
...||.|++||..|+.+|+.+|..+ + ||+..++..||..|||++.+|+|||||||+|+|+..........
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~~~ 74 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERT-H-YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQ 74 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhccCC
Confidence 3568899999999999999999999 6 99999999999999999999999999999999998776655443
No 2
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.89 E-value=4.6e-23 Score=126.23 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
||+|++||..|+.+|+..|..+ + ||+..++..||..+||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-Q-YLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 6899999999999999999999 6 9999999999999999999999999999999997
No 3
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.88 E-value=3.2e-23 Score=128.27 Aligned_cols=59 Identities=31% Similarity=0.423 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
..||+|++||..|+.+|+..|..+ + ||+..++..||..+||+..+|+|||||||+|+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN-R-YLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 358899999999999999999999 6 9999999999999999999999999999999997
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.88 E-value=5.2e-23 Score=128.11 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.||.|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-K-YISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 57899999999999999999999 6 99999999999999999999999999999999985
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.6e-23 Score=133.09 Aligned_cols=63 Identities=30% Similarity=0.347 Sum_probs=59.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
...||.||+||..|+.+|+.+|..+ + ||+..++..||..|||++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-H-NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4578999999999999999999999 6 9999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.88 E-value=1.4e-22 Score=131.00 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
.+.||.|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQ-R-YLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhc-C-CCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 4568899999999999999999999 6 99999999999999999999999999999999997553
No 7
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.88 E-value=1.8e-22 Score=130.45 Aligned_cols=65 Identities=28% Similarity=0.312 Sum_probs=60.7
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
....||+|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFN-M-YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 35578899999999999999999999 6 99999999999999999999999999999999998654
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.5e-23 Score=133.82 Aligned_cols=62 Identities=29% Similarity=0.257 Sum_probs=58.7
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..+.||.||+||..|+.+|+.+|..+ + ||+..+|..||..|||++.+|+|||||||+|+||.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQ-K-YLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 45678899999999999999999999 6 99999999999999999999999999999999984
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=3.4e-23 Score=134.78 Aligned_cols=62 Identities=27% Similarity=0.234 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
...||+|++||..|+.+|+.+|..+ + ||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-R-YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4678999999999999999999999 7 999999999999999999999999999999999853
No 10
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.88 E-value=1e-22 Score=125.53 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.||.|++||..|+.+|+..|..+ + ||+..++..||..+||+..+|++||||||+|+|++
T Consensus 1 ~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 1 VRRYRTAFTRDQLGRLEKEFYKE-N-YVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 37899999999999999999999 6 99999999999999999999999999999999984
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=128.62 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++||..|+.+|+.+|..+ + ||+..++..||..|||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQET-K-YPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4568899999999999999999999 7 99999999999999999999999999999999985
No 12
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.88 E-value=5.1e-23 Score=129.27 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
++.||+||+||..|+.+|+.+|..+ + ||+..++..||..+||+..+|+|||||||+|+|+.
T Consensus 1 ~k~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 1 MKTTRVRTVLNEKQLHTLRTCYAAN-P-RPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCCSCCCCCCSHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 4678999999999999999999999 7 99999999999999999999999999999999874
No 13
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.88 E-value=1.4e-22 Score=128.00 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
.||.||+||..|+.+|+..|..+ + ||+..++..||..|||+..+|+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-R-YLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 47899999999999999999999 6 99999999999999999999999999999999997653
No 14
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.88 E-value=1.7e-22 Score=131.77 Aligned_cols=63 Identities=29% Similarity=0.357 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
.+.||.|++||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+|+...
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERT-Q-YPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4578899999999999999999999 6 9999999999999999999999999999999999764
No 15
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.88 E-value=9.4e-23 Score=128.81 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.||.|++||..|+..|+..|..+ + ||+..++..||..+||++++|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-R-YLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-S-SCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-C-CCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 47899999999999999999999 6 999999999999999999999999999999999964
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.88 E-value=3.2e-23 Score=128.64 Aligned_cols=59 Identities=31% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.||+||+||..|+.+|+..|..+ + ||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQ-K-YLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 57899999999999999999999 6 99999999999999999999999999999999974
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=6.7e-23 Score=130.18 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-K-FITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 4578999999999999999999999 7 99999999999999999999999999999999984
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=9.9e-23 Score=132.49 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=58.8
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
+.+.||.||+||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+||.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLD-S-NPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHC-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45678899999999999999999999 7 99999999999999999999999999999999984
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=2.2e-22 Score=127.76 Aligned_cols=62 Identities=29% Similarity=0.289 Sum_probs=58.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
...||+|++||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQ-K-YLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3468899999999999999999999 7 999999999999999999999999999999999863
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.87 E-value=2.3e-22 Score=126.99 Aligned_cols=60 Identities=27% Similarity=0.318 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.||.|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-K-YLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 57899999999999999999999 6 999999999999999999999999999999999864
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=1.2e-22 Score=135.76 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 71 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~~ 71 (159)
...||+||+||..|+..|+..|..+ + ||+..+|..||..|||++++|+|||||||+|+|+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQ-K-YLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 4578899999999999999999999 6 9999999999999999999999999999999999765433
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=128.87 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
....||+|++||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+|+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDIN-N-SPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHC-S-SCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 34678999999999999999999999 6 99999999999999999999999999999999984
No 23
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=128.64 Aligned_cols=61 Identities=26% Similarity=0.213 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDAN-A-YPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4578899999999999999999999 6 99999999999999999999999999999999974
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.87 E-value=2.1e-22 Score=128.86 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=58.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++||..|+.+|+..|..+ + ||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATN-K-FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHT-S-CCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC-C-CcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 3568899999999999999999999 7 99999999999999999999999999999999984
No 25
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=3.6e-22 Score=127.99 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 8 NFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 8 r~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
..|++||..|+.+|+..|..+ + ||+..+|.+||..|||+++||+|||||||+|+|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~-~-YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC-Q-WARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 467889999999999999999 7 99999999999999999999999999999999986544
No 26
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=132.49 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=58.5
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
....||.||+||..|+.+|+.+|..+ + ||+..+|..||..|||++.+|+|||||||+|+||.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQ-K-YLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHS-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhC-C-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999 6 99999999999999999999999999999999985
No 27
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=128.67 Aligned_cols=61 Identities=30% Similarity=0.330 Sum_probs=57.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++||..|+.+|+.+|..+ + ||+..++..||..|||++.+|+|||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKT-Q-YLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCC-C-CCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4578999999999999999999999 6 99999999999999999999999999999999874
No 28
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=5.5e-22 Score=126.59 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNS-CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~-~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.++|++||..|+.+|+..|.. + + ||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-K-HPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC-C-CCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 578999999999999999996 8 7 999999999999999999999999999999999965
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.86 E-value=1.5e-22 Score=127.86 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=58.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
..||.|++||..|+.+|+..|..+ + ||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-R-YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-S-SCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 358899999999999999999999 6 9999999999999999999999999999999998654
No 30
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=5.8e-22 Score=126.80 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNS-CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~-~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
+++|++||..|+.+|+..|.. + + ||+..++..||..+||++++|+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~-yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-K-HPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999995 8 6 999999999999999999999999999999999965
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=125.75 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.||+|++||..|+.+|+..|..+ + ||+..++..||..+||+..+|+|||||||+|+|+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN-C-YPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 37899999999999999999999 7 99999999999999999999999999999999985
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=122.12 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
.||.|++||..|+.+|+..|..+ + ||+..++..||..+||+..+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-R-YLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 47899999999999999999999 6 999999999999999999999999999999975
No 33
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.86 E-value=9e-23 Score=132.79 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=56.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNS----CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~----~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
...||+||+||..|+..|+.+|.. + + ||+..+|..||..|||++++|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~-yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRI-Q-RQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCC-C-TTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcC-C-CcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 357889999999999999999999 8 6 9999999999999999999999999999999874
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.86 E-value=3.2e-22 Score=123.33 Aligned_cols=57 Identities=32% Similarity=0.378 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.|++||..|+.+|+..|..+ + ||+..++..||..+||++++|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-H-YPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 58999999999999999999 6 999999999999999999999999999999999865
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.86 E-value=5e-22 Score=129.58 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..||.||+||..|+.+|+..|..+ + ||+..+|..||..|||++++|+|||||||+|+||.
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTN-H-YLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcccCHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 467899999999999999999999 6 99999999999999999999999999999999985
No 36
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.86 E-value=4.2e-22 Score=123.15 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+.||.|++||..|+.+|+.+|..+ + ||+..++..||..|||+..+|+|||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~-~-yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK-Q-SLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-C-CcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 467899999999999999999999 7 999999999999999999999999999999986
No 37
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.86 E-value=7.7e-22 Score=120.00 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
|.||..|+..|+..|..+ + ||+..+|..||..+||++++|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-K-YLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-C-CcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999 6 99999999999999999999999999999999985
No 38
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=4e-22 Score=131.81 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
..+||..|+.+|+..|..+ + ||+..+|.+||..|||+++||+|||||||+|||+..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNS-S-VLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3489999999999999999 6 999999999999999999999999999999999854
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.85 E-value=7.9e-22 Score=130.52 Aligned_cols=60 Identities=27% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..||.||+||..|+.+|+..|..+ + ||+..+|..||..|||++++|+|||||||+|+||.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFN-R-YLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 468899999999999999999999 6 99999999999999999999999999999999984
No 40
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.85 E-value=4.6e-22 Score=131.31 Aligned_cols=63 Identities=29% Similarity=0.342 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSF---NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 71 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F---~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~~ 71 (159)
||+|++|+..|+.+|+.+| ..+ + ||+..++..||..|||+..||+|||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~-yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-P-YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-C-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 7899999999999999999 778 7 9999999999999999999999999999999999754433
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.1e-21 Score=132.09 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
..||+||+||..|+.+|+..|..+ + ||+..+|..||..|||++++|+|||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFN-K-YLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 457889999999999999999999 6 9999999999999999999999999999999999753
No 42
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=125.71 Aligned_cols=62 Identities=32% Similarity=0.295 Sum_probs=58.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.+.||.|++||..|+.+|+..|..+ + ||+..++..||..|||+..+|+|||||||+|+||..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKT-H-YPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4568889999999999999999999 6 999999999999999999999999999999999853
No 43
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.85 E-value=1.9e-21 Score=124.37 Aligned_cols=60 Identities=28% Similarity=0.346 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSF---NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F---~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
||+|++||..|+.+|+.+| ..+ + ||+..++..||..+||+..+|+|||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~-~-yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSN-P-YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTS-C-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccC-C-CcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 7899999999999999999 788 7 9999999999999999999999999999999998543
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=125.30 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
-++.|+.||..|+.+|+..|..+ + ||+..++..||..+||+..+|+|||||||+|+||.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN-Q-FPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 57899999999999999999999 6 99999999999999999999999999999999985
No 45
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=127.77 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=57.9
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCC---PGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~---~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
....||.||+||..|+.+|+.+|..++ + ||+..+|..||..|||++.+|+|||||||+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 346788999999999999999997652 7 99999999999999999999999999999999983
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=2.3e-22 Score=130.80 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=55.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNS-----CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~-----~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
...||.||+||..|+..|+ .|.. + + ||+..+|..||..|||++++|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~-yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRI-Q-KHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-C-SSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCC-C-CCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4578899999999999999 7999 8 6 9999999999999999999999999999999875
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=3.7e-21 Score=123.03 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=57.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
...||+|++|+..|+.+|+.+|.. + + ||+..++..||..+||+..||+|||||||+|+|+.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~-yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-P-YPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-C-CCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 457889999999999999999987 7 8 99999999999999999999999999999999985
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=2.4e-21 Score=129.97 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------CCchhhhhhhhhHHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG---------------LSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~---------------l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
.+.||.|++|+..|+.+|+.+|..+ + ||+..+|..||..|| |+..+|+|||||||+|+|+...
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-Q-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999 7 999999999999999 9999999999999999999765
Q ss_pred H
Q psy10851 69 K 69 (159)
Q Consensus 69 ~ 69 (159)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=124.47 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=56.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
...++|++||..|+.+|+..|..+ + ||+..+|..||..|||+.++|+|||||||+|+|+..
T Consensus 6 ~~~~kr~~~t~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 6 SGPTKYKERAPEQLRALESSFAQN-P-LPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 345678899999999999999999 6 999999999999999999999999999999999853
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=131.46 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=57.0
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
....+|+|++||..|+.+|+..|..+ + ||+..++..||..|||+.++|+|||||||+|+||....
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRT-Q-WPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34567899999999999999999999 6 99999999999999999999999999999999997543
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.84 E-value=3.7e-21 Score=118.47 Aligned_cols=56 Identities=29% Similarity=0.233 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
+|++||..|+.+|+.+|.. + + ||+..++..||..+||+..+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~-~-yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIEN-P-YLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTS-C-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCC-C-CcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 8 7 99999999999999999999999999999999973
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=124.53 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=57.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSC--CPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~--~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
...||+|++|+..|+.+|+.+|..+ |+ ||+..+|..||..|||+..||+|||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 4578899999999999999999873 38 999999999999999999999999999999999853
No 53
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=124.86 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.+.|++||..|+.+|+..|..+ + ||+..++..||..|||+.++|+|||||||+|+||.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~-~-yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRN-Q-FPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHS-S-SCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCccCCHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3569999999999999999999 6 99999999999999999999999999999999984
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-21 Score=121.95 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSF---NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F---~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
..+|+|++|+..|+.+|+.+| ..+ + ||+..++..||..+||+..||+|||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~-~-yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSN-P-YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTS-C-CCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccC-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999 778 7 9999999999999999999999999999999886
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=125.50 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=61.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh---------------------CCCchhhhhhhhhHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDT---------------------GLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l---------------------~l~~~~V~vWFqNRR~k 62 (159)
...||.|++|++.|+.+|+..|..+ + ||+..+|..||..| +|++.+|+|||||||+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~-~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQ-K-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCC-C-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 4578899999999999999999999 7 99999999999999 79999999999999999
Q ss_pred HHHHHHHHHh
Q psy10851 63 MKKIQRKAKQ 72 (159)
Q Consensus 63 ~rk~~~~~~~ 72 (159)
+|+.......
T Consensus 82 ~kr~~~~~~~ 91 (102)
T 2da6_A 82 EAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHS
T ss_pred HHHhhHhhhc
Confidence 9998665443
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.83 E-value=9.8e-21 Score=117.55 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.-|..|+..|+..|..+ + ||+..+|.+||..|||+.++|++||||||+|+|+..
T Consensus 10 ~~~~~Ql~~LE~~F~~~-~-YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQS-Q-FPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp -CCHHHHHHHHHHHHGG-G-SCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 45799999999999999 7 999999999999999999999999999999999864
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=126.46 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
++..||..|+.+|+..|..+ + ||+..+|..||..|||+.++|+|||||||+|+|+..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~-~-yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKS-S-FPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccC-C-CCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 45569999999999999999 6 999999999999999999999999999999999753
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.83 E-value=1e-20 Score=124.84 Aligned_cols=58 Identities=26% Similarity=0.153 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
..+|+|++|+..|+.+|+.+|.. + + ||+..++..||..+||+..||+|||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~-yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-P-YLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-C-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-C-CcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999 8 7 999999999999999999999999999999987
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.7e-20 Score=116.35 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNS-CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~-~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+..||.||.|+.+|+.+|+.+|.. + + ||+...|..||..|||++++|+|||||||.-.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~-~-yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVG-L-YPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 457899999999999999999999 8 5 999999999999999999999999999997543
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.82 E-value=1.6e-20 Score=122.93 Aligned_cols=59 Identities=27% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
+++|++|+..|+.+|+.+|.. + + ||+..++..||..+||+..||+|||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~-~-yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIEN-P-YLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSS-C-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCC-C-CcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 356777999999999999999 8 7 999999999999999999999999999999999853
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=6.4e-21 Score=121.62 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F-~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
-..+.|++++..|+.+|+..| ..+ + ||+..+|..||..|||++++|+|||||||+|+|+
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~-~-yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVT-K-YPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTC-S-SCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 356778889999999999999 888 6 9999999999999999999999999999999996
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.81 E-value=1.8e-20 Score=136.84 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=54.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.+.||+||+||..|+.+|+.+|..+ + ||+..+|..||..+||++++|+|||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMEN-Q-KPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhc-C-CCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3678899999999999999999999 7 99999999999999999999999999999999974
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.81 E-value=1.4e-20 Score=137.87 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=51.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.+.||+||+||..|+.+|+.+|..+ + ||+..+|..||..+||++++|+|||||||+|+||..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKC-P-KPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 5678899999999999999999999 7 999999999999999999999999999999999854
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.81 E-value=2.3e-20 Score=134.32 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=55.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.+.||+||+||..|+.+|+..|..+ + ||+..+|..||..+||++++|+|||||||+|+||.
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEH-S-KPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567889999999999999999999 7 99999999999999999999999999999999974
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=133.95 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=57.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.+.||+|++|+..|+.+|+.+|..+ + ||+..+|..||..+||+.++|+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKN-P-LPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4578899999999999999999999 7 9999999999999999999999999999999986
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=6.3e-20 Score=115.90 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
-...|..|+..|+..|..+ + ||+...|..||..|||++++|+|||||||+|+||.
T Consensus 8 ~~~~t~~ql~~LE~~F~~~-~-yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQ-K-YLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCcCCHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 3578999999999999999 7 99999999999999999999999999999999984
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.79 E-value=2.5e-20 Score=125.67 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------hC---CCchhhhhhhhhHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKD------------------TG---LSVRVVQVWFQNQRA 61 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~------------------l~---l~~~~V~vWFqNRR~ 61 (159)
..+.||.|++|+..|+.+|+..|..+ + ||+...|.+||.. || |++.+|+|||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQ-K-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 45678899999999999999999999 6 9999999999999 88 999999999999999
Q ss_pred HHHHHH
Q psy10851 62 KMKKIQ 67 (159)
Q Consensus 62 k~rk~~ 67 (159)
+.|+..
T Consensus 84 k~k~k~ 89 (99)
T 1lfb_A 84 EEAFRH 89 (99)
T ss_dssp TTSCCC
T ss_pred HHHHhc
Confidence 887654
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.79 E-value=8.1e-20 Score=132.66 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=57.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.+.||+|++|+..|+..|+..|..+ + ||+..+|..||..+||+.++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~-yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKS-P-KPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTC-S-CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccC-C-CCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3578899999999999999999999 6 99999999999999999999999999999999984
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=112.86 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.+..++..|+..|+..|..+ + ||+..+|..||..|||++++|+|||||||+|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~-~-yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALN-A-QPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcC-C-CcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 35567899999999999999 6 9999999999999999999999999999998765
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1.1e-19 Score=112.86 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 14 LLNLKVKLKTSFN-SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 14 s~~Q~~~Le~~F~-~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
...|+..|+..|. .+ + ||+..+|..||..|||+++||+|||||||+|+|+
T Consensus 8 ~~~~~~~LE~~F~~~~-~-yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAIT-K-HPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTTC-S-SCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHcC-C-CcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 3568999999994 57 6 9999999999999999999999999999999986
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.77 E-value=2.2e-19 Score=131.40 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 5 WFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 5 ~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
..||+|++||..|+.+|+..|..+ + ||+..+|..||..|||+.++|+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~-~-yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKEN-K-RPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 468899999999999999999999 7 999999999999999999999999999999998753
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=109.73 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFN---SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~---~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.+|+..|+.+|+.+|. .+ + ||+..++..||..+||+..||++||||||+|+|+..
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~-p-yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTH-P-YPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTS-C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHHHhccC-C-CCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 4799999999999999 88 8 999999999999999999999999999999999854
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=103.97 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 70 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~ 70 (159)
-..|+..++.+|+.+|.. + | ||+..+|..||..+||+.+||++||+|+|.|+++.....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~n-p-YPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYN-A-YPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGG-G-SCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccC-C-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 357899999999999987 6 8 999999999999999999999999999999999876543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.68 E-value=1e-17 Score=125.41 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=53.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhhHHHH
Q psy10851 4 YWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG---------------------LSVRVVQVWFQNQRAK 62 (159)
Q Consensus 4 ~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~---------------------l~~~~V~vWFqNRR~k 62 (159)
++.||.|++|+..|+.+|+..|..+ + ||+...|..||..|| |++.+|+|||||||+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~-~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQ-K-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHH-C-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4678899999999999999999999 6 999999999999999 9999999999999998
Q ss_pred HHH
Q psy10851 63 MKK 65 (159)
Q Consensus 63 ~rk 65 (159)
.|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-17 Score=100.49 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 15 LNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 15 ~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+.|+.+|+.+|..+ + +|+..++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n-~-~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-M-EPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-S-SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 57899999999999 5 9999999999999999999999999999973
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.61 E-value=3.9e-16 Score=118.19 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=52.6
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhhHHH
Q psy10851 3 QYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG---------------------LSVRVVQVWFQNQRA 61 (159)
Q Consensus 3 ~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~---------------------l~~~~V~vWFqNRR~ 61 (159)
.++.||.|++|++.|+.+|+.+|..+ + ||+..+|..||..|| |++.+|+|||||||+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~-~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQ-K-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHC-S-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 35678899999999999999999999 7 999999999999998 899999999999997
Q ss_pred H
Q psy10851 62 K 62 (159)
Q Consensus 62 k 62 (159)
+
T Consensus 217 ~ 217 (221)
T 2h8r_A 217 E 217 (221)
T ss_dssp T
T ss_pred h
Confidence 5
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.52 E-value=2e-15 Score=123.26 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
++.|+.|+..|+..|+..|..+ + ||+..+|.+||..|||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~-~-yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK-Q-SLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC-S-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC-C-CcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4567899999999999999999 6 999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.10 E-value=1.3e-11 Score=67.80 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q psy10851 50 RVVQVWFQNQRAKMKKIQRKAK 71 (159)
Q Consensus 50 ~~V~vWFqNRR~k~rk~~~~~~ 71 (159)
+||+|||||||+||||......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999877643
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.68 E-value=0.0019 Score=39.83 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
..++.-..+|+.+|... + .+.......|+.+..|+..||+-||-
T Consensus 12 ~~~p~~~e~L~~Yy~~h-k-~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 12 PPPPPDIQPLERYWAAH-Q-QLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCCCHHHHHHHHHT-C-CCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHh-c-ccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 44555578999999999 6 99999999999999999999999994
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.77 E-value=0.2 Score=31.77 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
.++..+..+|...|-.. + ...+||..+|++...|+.+...-|.|.|+...
T Consensus 37 ~L~~~~r~vl~l~~~~g---~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG---W----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSC---C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46777888887765444 2 46789999999999999999888888887644
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=92.11 E-value=0.27 Score=28.60 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
+|.+||.+....+..++... .........+|..+|++...|..|...
T Consensus 2 ~r~~ys~efK~~~~~~~~~g---~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRND---NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHC---TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHcC---CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 35679999876665444433 432223678999999999999999754
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=91.79 E-value=0.58 Score=31.31 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 8 NFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 8 r~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
++|+.||.++...+-..+..+ + .... ..||..+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~-g-~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN-P-DLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC-T-TSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHC-C-CCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 468899999987777777555 4 5543 368999999999999998776654
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.38 E-value=0.53 Score=29.58 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
|+.+.+|+.++....-..+. . . . ....||..+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~-g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-D-G-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-H-T-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-C-C-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 45677899988655555564 4 2 3 256889999999999999974
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=90.94 E-value=0.4 Score=28.23 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..+++.+..+|...|... + ...+||..+|++...|+.+...-+.+.|+.
T Consensus 14 ~~L~~~~r~il~l~~~~g---~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG---L----SYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC---C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred HhCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 357888888888776444 2 357899999999999999998777777654
No 85
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=90.02 E-value=0.95 Score=30.07 Aligned_cols=50 Identities=8% Similarity=0.031 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
..+++.+..+|...|... + ...+||..+|++...|+.|...-|.+.|+..
T Consensus 21 ~~L~~~~r~vl~l~y~~g---~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADD---Y----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GGSCHHHHHHHHHHHHTC---C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 357888888888876555 2 3678999999999999999998888887753
No 86
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=89.58 E-value=0.86 Score=31.47 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCCHHHHHHHHH-Hh--CCCchhhhhhhhhH
Q psy10851 7 QNFQTIRLLNLKVKLKTSF-NSCCPGHKTTQVREALAK-DT--GLSVRVVQVWFQNQ 59 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F-~~~~~~yp~~~~r~~La~-~l--~l~~~~V~vWFqNR 59 (159)
+++|+++|-+|...|-.++ ..+ + -.+..+....|. .+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~-~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-N-RSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-S-CCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-C-CCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999998 556 5 566554444332 56 78888999998653
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=89.02 E-value=1 Score=30.63 Aligned_cols=50 Identities=12% Similarity=-0.063 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
.+++.+..+|. .|-.. + ...+||..+|++...|+.+...-|.+.|+....
T Consensus 109 ~L~~~~r~v~~-~~~~g---~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG---Y----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHH-HHTTT---C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC---C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777887 44333 2 467899999999999999998888887776443
No 88
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=88.66 E-value=1 Score=24.04 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
.++..+...+...+... + ....||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g---~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN---V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT---C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555433 3 2668899999999999999853
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=88.22 E-value=1.2 Score=28.45 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
..++..+..+|..++. . + ...+||..+|++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~-g---~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE-G---L----TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT-T---C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc-C---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999988632 2 2 24789999999999999998776666554
No 90
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.19 E-value=1.4 Score=29.20 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.+++.+..+|...|... + ...+||..+|++...|+.+...-|.+.|+..
T Consensus 25 ~L~~~~r~vl~l~~~~g---~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED---Y----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC---C----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47788888888766544 2 3678999999999999999998888888754
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=87.72 E-value=1.3 Score=26.52 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
..+++.+..+|...|-.. . . ....-.+||..+|++...|+.+...-+.|.|
T Consensus 9 ~~L~~~er~il~l~~~l~-~-~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLI-D-G-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTT-T-S-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcc-c-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 457889999998887511 0 0 1123568999999999999999887777776
No 92
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=86.26 E-value=1.7 Score=26.54 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 71 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~~ 71 (159)
+.+++-+|..| | ||+..=- .-|. .|||.+||..+.+..
T Consensus 18 vRiIkiLyQSN-P-~P~p~GT-rqaR-------------RNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSN-P-PPNPEGT-RQAR-------------RNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTC-C-CCCCCSC-HHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-C-CCCCCCc-hHHH-------------HHHHHHHHHHHHHHH
Confidence 34556668877 9 9985411 1121 699999999876543
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=86.10 E-value=3 Score=26.92 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
...+|..++.+|.-++ .. + ...+||..+|++...|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G---~----s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG---F----LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT---C----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 5679999999997755 23 2 2478999999999999999876665543
No 94
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=85.82 E-value=1 Score=28.16 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.+++.+..+|...|-.. . - ......+||..+|++...|+.+...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~-~-~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLL-D-G-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTT-T-S-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccC-C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57788888888877410 0 0 11246788999999999999998777777665
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=85.82 E-value=0.5 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
.++..+...+..++... . ....||..+|++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g---~----s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG---H----PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT---C----CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC---C----CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 45666665555555432 2 3568899999999999999875443
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=85.61 E-value=1.4 Score=27.28 Aligned_cols=51 Identities=16% Similarity=-0.004 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 8 NFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 8 r~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..-..++..+..+|..++ . . + ...+||..+|++...|+.+..+-+.|.+..
T Consensus 17 ~~~~~Lt~~e~~vl~l~~--~-g-~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIA--Q-G-L----PNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCGGGSCHHHHHHHHHHT--T-T-C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHccCCHHHHHHHHHHH--c-C-C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 334578999999998843 3 1 2 367899999999999999988777776543
No 97
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=85.21 E-value=1.8 Score=25.55 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.-..+++.+..+|..+ .. . + ...+||..+|++...|+.++.+-+.|.+.
T Consensus 8 ~~~~L~~~e~~il~~~--~~-g-~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELL--VQ-D-K----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHH--TT-T-C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHH--Hc-C-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3457899999999874 23 2 4 35679999999999999998876666544
No 98
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=85.20 E-value=0.99 Score=26.65 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.+++.+..+|...|-.. . + ....-.+||..+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~-~-~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-M-N-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-S-S-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccC-C-C-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888899998877321 0 1 11245789999999999999998776666654
No 99
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=84.27 E-value=1.9 Score=31.24 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.+++.+..+|...|-.. ....+||..+|++...|+.+...-|.|.|+..
T Consensus 187 ~L~~~~r~vl~l~~~~g-------~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-------LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-------CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666443 24678999999999999999988888888753
No 100
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=84.16 E-value=1.3 Score=29.62 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHHHHh
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~~~~ 72 (159)
+.+++-+|..| | ||...=-. -|. .|||.+||..+.+...
T Consensus 15 vRiIkiLyQSN-P-yP~peGTR-qaR-------------RNRRRRWR~RQrQI~~ 53 (115)
T 2x7l_M 15 VRLIKFLYQSN-P-PPNPEGTR-QAR-------------RNRRRRWRERQRQIHS 53 (115)
T ss_dssp HHHHHHHHHSS-C-CCCCCCCT-TTH-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-C-CCCCCCch-hhh-------------HhHHHHHHHHHHHHHH
Confidence 34555668777 9 99754110 011 7999999998766443
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=84.15 E-value=2 Score=30.13 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 13 RLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 13 ~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
++..+..+|.-.|-.. ....+||..+|++...|+.+...-|.|.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-------~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-------LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555544333 2357899999999999999998888887765
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=84.00 E-value=1 Score=28.27 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
-..++..+..+|.-++ .. +. ..+||..+|++...|+.+..+-+.|.+.
T Consensus 27 l~~Lt~~e~~vl~l~~-~g---~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 27 YEMLTEREMEILLLIA-KG---YS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGGCCSHHHHHHHHHH-TT---CC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHH-cC---CC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3468899999998753 22 32 3578999999999999998877776654
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=82.85 E-value=1.4 Score=26.47 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.+++.+..+|.-+| . . + ...+||..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~--~-g-~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVV--A-G-L----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHT--T-T-C----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHH--c-C-C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46778888887742 3 2 3 24689999999999999999877777664
No 104
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.73 E-value=4 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
...+|..++.+|.-++ .. + ...+||..+|++.+.|+...++-+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G---~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KG---F----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH-TT---C----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4579999999998776 22 3 367899999999999998877665554
No 105
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=79.37 E-value=1 Score=31.43 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . | . .....||...|++...|-..|.|+-.=.
T Consensus 21 l~aA~~lf~~~-G-~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 21 LAAAVRVFSEE-G-L-D-AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp HHHHHHHHHHH-C-T-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhc-C-c-C-CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 56666779989 4 8 6 7899999999999999999999876533
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=77.68 E-value=10 Score=23.98 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTG--LSVRVVQVWFQ 57 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~--l~~~~V~vWFq 57 (159)
.+....++..++..|+..|..- +. +.+..+...+...+| ++...|+.+|+
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G-~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNG-FISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSS-CBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCC-cCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445678999999999999753 25 899999999888887 56677887774
No 107
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.32 E-value=5 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHH-hh-cCCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSF-NS-CCPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F-~~-~~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
|.+||.++....-..+ .. . + ....||..+|++...|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g---~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG---A----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG---S----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC---C----hHHHHHHHHCcCHHHHHHHHH
Confidence 4678888865554444 23 2 1 367899999999999999963
No 108
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=75.24 E-value=6 Score=29.07 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
...+|+.++.+|.-.+ .. + .-.+||..+|++...|+...+|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~-~g---~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS-KG---K----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHH-TT---C----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4579999999997654 22 2 3578999999999999999887776654
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=75.21 E-value=6.9 Score=24.97 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHhCCCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTT-QVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~-~~r~~La~~l~l~~~~V~vWFq 57 (159)
+.+||.++....-..+......|.+. .....||..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 45789988654434332220013332 4577899999999999999963
No 110
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=75.05 E-value=8.1 Score=24.87 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
.+++.+..++.-.|-.+ ++ ....-.+||..+|++...|+......+.|.|+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~--~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGID--MN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46777888887777432 01 12356789999999999999998888888777644
No 111
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=73.31 E-value=1.2 Score=31.16 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 39 EALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 39 ~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.+||..+|++...|+.+...-|.+.|+.
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999998888887763
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=73.30 E-value=2.8 Score=23.80 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..+||..+|++...|+.+..+-+.|.+..
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999988777766543
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=72.03 E-value=6.5 Score=25.95 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
..++..+...+..++... + ....||..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G---~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN---V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT---C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 567888877776677433 3 2567899999999999999864
No 114
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=71.18 E-value=5.5 Score=22.04 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=27.9
Q ss_pred CCC--HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 12 IRL--LNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 12 ~~s--~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
.++ ..+...+..+|... + ...+||..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g---~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG---Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT---C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 66666666555433 3 356789999999999999975
No 115
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=70.17 E-value=8.9 Score=28.06 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
...+|+.++.+|.-.+ .. + .-.+||..+|++...|+...+|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~-~g---~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA-VG---K----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHT-TT---C----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4579999999997643 22 2 3578899999999999999887776643
No 116
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=69.70 E-value=1.2 Score=30.87 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=...
T Consensus 20 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 64 (203)
T 3f1b_A 20 LDAAVDVFSDR-G-FHE-TSMDAIAAKAEISKPMLYLYYGSKDELFAA 64 (203)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHTTSCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-ccHHHHHHHhCCchHHHHHHhCCHHHHHHH
Confidence 45556668888 4 644 457789999999999999999998774433
No 117
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=69.63 E-value=0.86 Score=32.07 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+..-...|... . | . .....||+..|++...|-.+|.|+-.
T Consensus 19 l~aA~~lf~~~-G-~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAE-G-L-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHT-C-T-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhc-C-C-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 45556679999 4 8 6 68899999999999999999998765
No 118
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=69.60 E-value=7.3 Score=29.07 Aligned_cols=48 Identities=21% Similarity=0.003 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
..+++.+..+|.-.+ .. + .-.+||..+|++...|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~-~G---~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR-KG---L----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH-TT---C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468899999998864 22 2 367899999999999999998888877654
No 119
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=68.84 E-value=1.4 Score=31.94 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=37.7
Q ss_pred CCCcCCCCCCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 1 MPQYWFQNFQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 1 ~~~~~~kr~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
|+.+..++.+..-+..+ +......|... . |- ......||...|++...|-.+|.|+-.=..-
T Consensus 1 M~~~~~~~~~~~~~r~~Il~AA~~l~~~~-G-~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 63 (231)
T 2qib_A 1 MTTGVRRRMGVEERRQQLIGVALDLFSRR-S-PD-EVSIDEIASAAGISRPLVYHYFPGKLSLYEA 63 (231)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHS-C-GG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHc-C-ch-hcCHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 45444444443333333 45666778888 4 63 3457788999999999999999998765444
No 120
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=67.20 E-value=8.7 Score=23.67 Aligned_cols=45 Identities=4% Similarity=-0.014 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
+++..++..+...|..- +. +.+..+...+...+|++...|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNG-FIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTC-EEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57889999999999752 14 78888888888888999888877664
No 121
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=66.15 E-value=15 Score=24.86 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCch
Q psy10851 8 NFQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVR 50 (159)
Q Consensus 8 r~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~ 50 (159)
++|..+|.+|+..|+..|..- +. +.+..+...+.+.+|+...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG-~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDG-FIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTS-CCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCC-eEcHHHHHHHHHHcCCCcc
Confidence 356789999999999999751 24 8999999988888887654
No 122
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=65.68 E-value=3.6 Score=28.85 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=
T Consensus 23 l~aA~~l~~~~-G-~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 23 ILAARNLFIER-P-YAQ-VSIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHHHTS-C-CSC-CCHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHC-C-CCc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45555668888 4 654 356778999999999999999998763
No 123
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=64.59 E-value=3.6 Score=29.31 Aligned_cols=43 Identities=5% Similarity=0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 41 l~aA~~lf~~~-G-~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (221)
T 3g7r_A 41 LGTATRIFYAE-G-IHS-VGIDRITAEAQVTRATLYRHFSGKDDLI 83 (221)
T ss_dssp HHHHHHHHHHH-C-STT-SCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 45555668888 4 654 4577889999999999999999987633
No 124
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=63.95 E-value=1.8 Score=29.79 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||+..|++...|-..|.|+..=.
T Consensus 18 l~aA~~lf~~~-G-~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 18 LARAESTLEKD-G-VDG-LSLRQLAREAGVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHTC-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHhc-C-hhh-hhHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 56666778888 4 543 4567889999999999999999987643
No 125
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=63.94 E-value=16 Score=27.46 Aligned_cols=48 Identities=13% Similarity=-0.070 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
...+|..++.+|.-.. .. + ...+||..+|++.+.|+....|-+.|..-
T Consensus 195 ~~~Lt~re~~vl~~~~-~G---~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMS-RG---K----TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHH-TT---C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3579999999998774 22 2 36789999999999999999888776543
No 126
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=63.39 E-value=21 Score=21.22 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=38.9
Q ss_pred CCCCCCCCCHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 6 FQNFQTIRLLNLK-VKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~-~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
-+++|.++|++.- ..+....... ...-++..+.++-...||+..+|+.=.|.-|.+.||
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4678899998764 3333333332 113344555555555689999999999998888775
No 127
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=63.24 E-value=3.5 Score=28.63 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred CCCcCCCCCCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 1 MPQYWFQNFQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 1 ~~~~~~kr~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
|....+|..+...+..+ +.+....|... . |-. .....||+..|++...+-..|.|+-.=.....
T Consensus 1 m~~~~~~m~~~~~~r~~Il~aa~~lf~~~-G-~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 65 (195)
T 2iu5_A 1 MSAFFLNMEKSIITQKIIAKAFKDLMQSN-A-YHQ-ISVSDIMQTAKIRRQTFYNYFQNQEELLSWIF 65 (195)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHS-C-GGG-CCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHH
T ss_pred CchHHHhccccHHHHHHHHHHHHHHHHhC-C-CCe-eCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 33444554443333333 56677778888 4 653 45778899999999999999999887655443
No 128
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=63.17 E-value=2.1 Score=29.94 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=40.0
Q ss_pred CCCcCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 1 MPQYWFQNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 1 ~~~~~~kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
||...|.+.....-..-+.+....|... . |-. .....||...|++...+-..|.|+-.=..
T Consensus 1 Mp~~~~~~~~~~tr~~Il~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~ 61 (189)
T 3vp5_A 1 MPKSTYFSLSDEKRNRVYDACLNEFQTH-S-FHE-AKIMHIVKALDIPRGSFYQYFEDLKDAYF 61 (189)
T ss_dssp -CCHHHHTSCHHHHHHHHHHHHHHHHHS-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred CCchhhhhCCHHHHHHHHHHHHHHHHHC-C-ccc-ccHHHHHHHhCCChHHHHHHCCCHHHHHH
Confidence 6654443322211122356666778888 4 655 46778999999999999999999866433
No 129
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=63.16 E-value=16 Score=23.28 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
..++.++...+-.++. . . +. ...||..+|++...|..|++.
T Consensus 16 ~~~s~~~r~~i~~~~~-~-g-~s----~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-D-G-IR----PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHH-T-T-CC----HHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-c-C-CC----HHHHHHHHCcCHHHHHHHHHH
Confidence 3678887766666665 4 2 32 467899999999999999853
No 130
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=61.84 E-value=5 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..||++..-|..|+.++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC
Confidence 67899999999999999986543
No 131
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=61.30 E-value=3.8 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 132
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=60.54 E-value=1.7 Score=30.49 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..-
T Consensus 19 l~aA~~lf~~~-G-~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 63 (217)
T 3nrg_A 19 IDVLLDEFAQN-D-YDS-VSINRITERAGIAKGSFYQYFADKKDCYLY 63 (217)
T ss_dssp HHHHHHHHHHS-C-GGG-CCHHHHHHHHTCCTTGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CCHHHHHHHhCCcHHHHHHHcCCHHHHHHH
Confidence 56666678888 4 643 457788999999999999999998764433
No 133
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=60.52 E-value=3.7 Score=23.23 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 134
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=60.45 E-value=5 Score=27.49 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.++..+..+|.-. |.......+||..+|++...|+.+...-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~-------~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLT-------AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTT-------SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHH-------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566666666543 3333457889999999999999999777776665
No 135
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=60.22 E-value=6.4 Score=27.25 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+..=..
T Consensus 22 l~aa~~lf~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 65 (213)
T 2qtq_A 22 LQTASNIMREG-D-VVD-ISLSELSLRSGLNSALVKYYFGNKAGLLK 65 (213)
T ss_dssp HHHHHHHHHHH-T-SSC-CCHHHHHHHHCCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-ccHHHHHHHhCCChhhHhHhcCCHHHHHH
Confidence 56666778888 4 654 34678899999999999999999876443
No 136
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.76 E-value=14 Score=25.16 Aligned_cols=41 Identities=5% Similarity=-0.087 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
..++.++...+-.++... + ....||..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G---~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG---V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT---C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC---C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888776666666533 3 3567899999999999999864
No 137
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=59.74 E-value=4 Score=23.22 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987543
No 138
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=58.22 E-value=20 Score=26.31 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
....+|+.++.+|.-.. .. + ...+||..+|++.+.|+.-..|-+.|.
T Consensus 172 ~~~~Lt~re~~vl~~~~-~G---~----s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 172 SNVRLTARETEMLKWTA-VG---K----TYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GGCCCCHHHHHHHHHHH-TT---C----CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHH-cC---C----CHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 34578888988887653 22 2 367899999999999999887766654
No 139
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=57.98 E-value=2 Score=29.95 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . | . .....||+..|++...|-..|.|+-.=
T Consensus 22 l~aA~~lf~~~-G-~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 22 IEAAAAEVARH-G-A-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHH-G-G-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhc-C-C-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 55666678888 4 9 6 589999999999999999999987653
No 140
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=57.75 E-value=12 Score=25.79 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCC---CchhhhhhhhhHHHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGL---SVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l---~~~~V~vWFqNRR~k~rk~ 66 (159)
+.+|+.-|..-+-.|=-. + ||+....+..--.... ...|+-.||.|=|-=.-.+
T Consensus 2 ~~Ltp~HLkKAKLMFfyt-R-YPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFREFyYIQ 58 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWV-R-YPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQ 58 (152)
T ss_dssp CCCCHHHHHHHHHHTTTC-S-SCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeee-c-CCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 467888888888888888 6 9998765543222222 2458889999999754444
No 141
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=57.60 E-value=22 Score=23.75 Aligned_cols=41 Identities=5% Similarity=-0.116 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
..++.++....-..+. . . + ....||..+|++...|..|++.
T Consensus 31 ~~~s~e~r~~iv~~~~-~-G-~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-Q-G-V----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-T-T-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-c-C-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4688887766666664 3 2 3 2567899999999999999853
No 142
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=57.27 E-value=4.4 Score=28.53 Aligned_cols=48 Identities=4% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
+......|... . |-. .....||+..|++...|-.+|.|+-.=..-...
T Consensus 34 l~aa~~lf~~~-G-~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~ 81 (215)
T 2qko_A 34 VNAAIEVLARE-G-ARG-LTFRAVDVEANVPKGTASNYFPSRDDLFDQVGK 81 (215)
T ss_dssp HHHHHHHHHHT-C-TTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-C-hhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHH
Confidence 55666678888 4 654 457789999999999999999998776555443
No 143
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=56.86 E-value=4.4 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999977653
No 144
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=56.51 E-value=2.3 Score=30.70 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 32 HKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 32 yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
|.......+||..+|++...|+.++..-|.|.|
T Consensus 211 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 211 YYKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ---------------------------------
T ss_pred HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 344456788999999999999999876665543
No 145
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=56.45 E-value=12 Score=22.09 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
..++...+..|..... .+ ...||..+|++...|..|=.+++
T Consensus 9 ~~~~g~~lr~~R~~~g------lt---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS------LT---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT------CC---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC------CC---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 4688888888876532 22 46789999999999999987754
No 146
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=56.42 E-value=5.2 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 23 l~aa~~l~~~~-G-~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (206)
T 3kz9_A 23 MEIALEVFARR-G-IGR-GGHADIAEIAQVSVATVFNYFPTREDLV 65 (206)
T ss_dssp HHHHHHHHHHS-C-CSS-CCHHHHHHHHTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45555668888 4 654 4467889999999999999999986533
No 147
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=56.01 E-value=9.3 Score=27.93 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=38.8
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 7 QNFQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 7 kr~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
++.|...+.++ +..-...|... . |-. .....||+.+|++...|-..|.|+-.=..-.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~-G-~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~ 67 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTV-G-ERG-LTFRALAERLATGPGAIYWHITGKAELLGAA 67 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHT-T-TTT-CCHHHHHHHHTSCGGGGGGTCCCHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhc-C-ccc-CCHHHHHHHHCCChHHHHHhcCCHHHHHHHH
Confidence 34455666666 56667778888 4 654 4567889999999999999999987655443
No 148
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=55.85 E-value=7.1 Score=27.42 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... + .......||...|++...|-.+|.|+..=..
T Consensus 26 l~aA~~lf~~~--G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~ 68 (215)
T 2hku_A 26 FTAATELFLEH--G--EGVPITQICAAAGAHPNQVTYYYGSKERLFV 68 (215)
T ss_dssp HHHHHHHHHHH--C--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHh--C--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 45555668777 4 6667888999999999999999999876443
No 149
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=55.47 E-value=5.2 Score=23.36 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 150
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=54.97 E-value=30 Score=24.56 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
..+|..+..+|.-+.. . + ...+||..++++.+.|++..+|=|.|.
T Consensus 148 ~~LT~rE~~vL~~l~~-g---~----s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSE-G---L----TNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHT-T---C----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHC-C---C----CHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4688888888876542 2 2 357899999999999999998777664
No 151
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=54.42 E-value=16 Score=22.56 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
.++..+...|...|..- +. +.+..+...+...+|++...|..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDG-FVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSS-EECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCC-cEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788999999998652 14 88988888888888999888887764
No 152
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=54.10 E-value=2.9 Score=29.56 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |- .....||...|++...|-.+|.|+-.=..-
T Consensus 18 l~aA~~lf~~~-G-~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~~ 61 (224)
T 1t33_A 18 IAAALAQFGEY-G-LH--ATTRDIAALAGQNIAAITYYFGSKEDLYLA 61 (224)
T ss_dssp HHHHHHHHHHH-G-GG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHh-C-cc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHHH
Confidence 55556668888 4 76 678899999999999999999998764443
No 153
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=54.01 E-value=5.6 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 154
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.73 E-value=2.7 Score=33.40 Aligned_cols=10 Identities=20% Similarity=-0.031 Sum_probs=4.1
Q ss_pred CCHHHHHHHH
Q psy10851 13 RLLNLKVKLK 22 (159)
Q Consensus 13 ~s~~Q~~~Le 22 (159)
++..|-..|+
T Consensus 169 v~~~~A~lL~ 178 (339)
T 3j21_k 169 ITPELANILN 178 (339)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3444444443
No 155
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=53.39 E-value=12 Score=18.19 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHH
Q psy10851 57 QNQRAKMKKIQRKAK 71 (159)
Q Consensus 57 qNRR~k~rk~~~~~~ 71 (159)
.|||.+||..+.+..
T Consensus 7 RnRRRRWR~Rq~qi~ 21 (26)
T 1etf_B 7 RNRRRRWRERQRAAA 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 589999998776543
No 156
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=53.21 E-value=6 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998763
No 157
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=53.08 E-value=3.3 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |- ......||...|++...|-.+|.|+-.=.
T Consensus 20 l~aA~~l~~~~-G-~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 62 (191)
T 4aci_A 20 LEGARRCFAEH-G-YE-GATVRRLEEATGKSRGAIFHHFGDKENLF 62 (191)
T ss_dssp HHHHHHHHHHH-H-HH-HCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHh-C-cc-cCCHHHHHHHHCCCchHHHHHCCCHHHHH
Confidence 45555667666 3 42 33577889999999999999999887643
No 158
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=52.80 E-value=6 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999997754
No 159
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=52.31 E-value=6 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999876553
No 160
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=52.10 E-value=13 Score=24.59 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
.++...+..|......+ ...||..+|++...|..|-.+++
T Consensus 70 ~~~~~~l~~~R~~~gls---------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT---------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTTCC---------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCCC---------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35566666665443222 45789999999999999988765
No 161
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=50.83 E-value=6.6 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 162
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=50.76 E-value=9.2 Score=28.16 Aligned_cols=56 Identities=7% Similarity=-0.056 Sum_probs=40.5
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 9 FQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 9 ~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
.|...+.++ +..-...|... . |-. .....||+.+|++..-|-..|.|+-.=..-..
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~-G-~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av~ 71 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAE-G-LEK-VTMRRLAQELDTGPASLYVYVANTAELHAAVL 71 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHH-C-SSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHhc-C-chh-cCHHHHHHHHCCChhHHHHHcCCHHHHHHHHH
Confidence 344566666 56667778888 4 654 45778899999999999999999776554443
No 163
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=50.66 E-value=13 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
..++..++..|...|..- +. +.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G-~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSG-RLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSS-SEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCC-CCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 457788889999998652 14 88888988888889998888888774
No 164
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=50.57 E-value=5.2 Score=27.70 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-.+|.|+-.=..
T Consensus 18 l~aA~~lf~e~-G-~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~~ 61 (192)
T 2fq4_A 18 LSASYELLLES-G-FKA-VTVDKIAERAKVSKATIYKWWPNKAAVVM 61 (192)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHHH
Confidence 45556668888 4 654 45778899999999999999999876554
No 165
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=49.86 E-value=10 Score=27.39 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=...
T Consensus 29 l~aA~~lf~~~-G-~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~~a 73 (231)
T 2zcx_A 29 LDAARELGTER-G-IRE-ITLTDIAATVGMHKSALLRYFETREQIFLK 73 (231)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhC-C-ccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 45556668888 4 654 456788999999999999999998764443
No 166
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=49.78 E-value=7 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998776
No 167
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=49.57 E-value=39 Score=22.03 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh------cCCCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNS------CCPGHKTTQVREALAKDTG--LSVRVVQVWFQ 57 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~------~~~~yp~~~~r~~La~~l~--l~~~~V~vWFq 57 (159)
+++.-..++..++..|...|.. + . +.+..+...+...+| ++...|..+|.
T Consensus 5 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~~-G-~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 5 YKAAVEQLTEEQKNEFKAAFDIFVLGAED-G-SISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTTTCGG-G-SBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCCCC-C-cCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455667999999999999864 4 3 788888888887777 45556666653
No 168
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=49.56 E-value=9.6 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987553
No 169
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=49.37 E-value=48 Score=22.33 Aligned_cols=46 Identities=9% Similarity=-0.077 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh-------CCCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDT-------GLSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l-------~l~~~~V~vWFq 57 (159)
+..++..+...|..++..+ + ..+..+........ .++...|..|+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~-~-~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN-P-TMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC-S-SSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC-c-cchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 4567888888888888766 5 66655444322221 467888888874
No 170
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=49.36 E-value=7 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999987653
No 171
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=48.97 E-value=17 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCC---CchhhhhhhhhHHHHHHHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGL---SVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l---~~~~V~vWFqNRR~k~rk~ 66 (159)
-+.+|+.-|..-+-.|=-. + ||+....+..--.... ...|+-.||.|=|-=.-.+
T Consensus 14 ~~~Ltp~HLkKAKLMFfyt-R-YPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFREFyYIQ 71 (174)
T 2lmd_A 14 QEGLSPNHLKKAKLMFFYT-R-YPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQ 71 (174)
T ss_dssp CCCSCHHHHHHHHHHHTTC-C-SCHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHhhhhheeee-c-CCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 4578888888888888889 6 9997765543222222 2458889999999744444
No 172
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=48.75 E-value=8.3 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998876
No 173
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=48.69 E-value=7.6 Score=22.41 Aligned_cols=23 Identities=35% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999987754
No 174
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=48.37 E-value=15 Score=25.28 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+......|... . |-. .....||...|++...|-..|.|+-.
T Consensus 23 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 23 STVGIELFTEQ-G-FDA-TSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHH-C-TTT-SCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 56666778888 4 654 45678999999999999999988753
No 175
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=48.19 E-value=11 Score=21.99 Aligned_cols=20 Identities=35% Similarity=0.616 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFq 57 (159)
..++|..||++.+.|..|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999999964
No 176
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=47.82 E-value=6.2 Score=27.60 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 13 RLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 13 ~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
.+..+ +..-...|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 9 ~tr~~Il~AA~~lf~~~-G-~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L~~ 58 (203)
T 2np5_A 9 TSPERLAAALFDVAAES-G-LEG-ASVREVAKRAGVSIGAVQHHFSTKDEMFA 58 (203)
T ss_dssp CHHHHHHHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh-C-hhh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 33443 56666778888 4 653 45778899999999999999999876443
No 177
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=47.29 E-value=38 Score=27.74 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.++..+..+|...|-.. - . ......+||..+|++...|+.+...-+.|.|+
T Consensus 375 ~L~ereR~VI~LRygL~-~-~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLI-D-G-REHTLEEVGAYFGVTRERIRQIENKALRKLKY 425 (438)
T ss_pred hCCHHHHHHHHHHHhcc-C-C-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35566666676666421 0 0 22467889999999999999999888888883
No 178
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=47.25 E-value=12 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |- .....||...|++...|-..|.|+-.=...
T Consensus 15 l~aA~~lf~~~-G-~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 15 LEAAAALTYRD-G-VG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHH-C-TT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHh-C-cc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 56667778888 4 77 678899999999999999999998875444
No 179
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=47.17 E-value=41 Score=19.62 Aligned_cols=46 Identities=9% Similarity=-0.144 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCCCHHHHHHHHHHhCC--Cchh---hhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNS-----CCPGHKTTQVREALAKDTGL--SVRV---VQVWF 56 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~-----~~~~yp~~~~r~~La~~l~l--~~~~---V~vWF 56 (159)
....++..++..|...|.. + . +.+..+...+...+|. +... |..+|
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~-G-~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAE-N-IAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTT-S-CBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCC-C-cCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3456888999999999864 3 4 8899999888888875 4445 55555
No 180
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.15 E-value=8.4 Score=22.15 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
...||..+|++..-|..|+
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 181
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=46.70 E-value=40 Score=23.46 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
..+|+.+..+|.-+.. . + .+.+||..++++.+.|++...|=|.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~-g---~----s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQ-G---L----PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHT-T---C----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHc-C---C----CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3588888888876542 2 2 3678999999999999999888777754
No 182
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=45.98 E-value=9.1 Score=23.56 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 183
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=45.25 E-value=12 Score=26.79 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=39.8
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 7 QNFQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 7 kr~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
++.|...+..+ +......|... . |-. .....||..+|++...|-..|.|+-.=.....
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~-G-~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~ 77 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEV-G-LDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMA 77 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhc-C-ccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 34455666666 56667778888 4 643 45778899999999999999999877555443
No 184
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.73 E-value=4.6 Score=32.08 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.7
Q ss_pred HHHHHHhCC
Q psy10851 39 EALAKDTGL 47 (159)
Q Consensus 39 ~~La~~l~l 47 (159)
..|.+.+|+
T Consensus 174 A~lL~~l~i 182 (339)
T 3j21_k 174 ANILNALGI 182 (339)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 334444443
No 185
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=44.40 E-value=6.9 Score=26.92 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
+..-...|... . |-. .....||+..|++...|-..|.|+-.=..-...
T Consensus 23 l~aa~~lf~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (208)
T 3cwr_A 23 VGAAQRLLSSG-G-AAA-MTMEGVASEAGIAKKTLYRFASGRADLIGLLVE 70 (208)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-HHh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 44555667777 4 543 346788999999999999999997765554433
No 186
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=43.73 E-value=14 Score=25.53 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 21 Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
++.+|... . |-. .....||...|++...|-..|.|+-.
T Consensus 34 ~~~lf~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 34 ALMLESSD-G-SQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHHHHC---------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHHHHhcC-C-hhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 33356666 3 544 45778999999999999999998876
No 187
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=43.50 E-value=43 Score=21.06 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCC-------Cchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGL-------SVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l-------~~~~V~vWFqN 58 (159)
..++.++...|..+...+ + ..+..+........|+ +...|..|++.
T Consensus 74 ~~l~~~~~~~i~~~~~~~-~-~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSS-P-GMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTC-T-TCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhC-c-chHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 467777888888777666 5 6665544332222274 77888888753
No 188
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=43.18 E-value=9.6 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 189
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.11 E-value=11 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 190
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=42.88 E-value=16 Score=26.70 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=37.3
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 9 FQTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 9 ~Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+|...+.++ +..-...|... . |-. .....||..+|++...|-..|.|+-.=..
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~-G-~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAG-D-AET-FSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSS-S-CCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhc-C-ccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 344566665 46666778777 4 654 45678899999999999999999776443
No 191
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.67 E-value=44 Score=21.63 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC--CCchhhhhhhhhHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG--LSVRVVQVWFQNQRA 61 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~--l~~~~V~vWFqNRR~ 61 (159)
..++..+...+... ..+ + ..+. .+|+..+| ++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~-~-~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASN-S-CKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHH-C-CCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhC-C-CCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 35788888777766 444 4 5554 45777788 788999999965444
No 192
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=42.58 E-value=7.7 Score=26.68 Aligned_cols=43 Identities=5% Similarity=-0.063 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 18 l~aa~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (202)
T 3lwj_A 18 LTCSLDLFIEK-G-YYN-TSIRDIIALSEVGTGTFYNYFVDKEDIL 60 (202)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHCSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 45566678888 4 643 4577889999999999999999987533
No 193
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=42.53 E-value=11 Score=26.30 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||...|++...|-.+|.|+-.=...
T Consensus 16 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a 60 (210)
T 3vib_A 16 MLAALETFYRK-G-IAR-TSLNEIAQAAGVTRDALYWHFKNKEDLFDA 60 (210)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHHCcCHHHHHHHCCCHHHHHHH
Confidence 45555678888 4 765 346788999999999999999998764443
No 194
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=41.96 E-value=10 Score=26.26 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||...|++...|-.+|.|+-.=
T Consensus 37 l~aa~~l~~~~-G-~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 37 IKVATELFREK-G-YYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHT-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45666678888 4 653 457788999999999999999998763
No 195
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=41.87 E-value=17 Score=24.50 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||...|++...+-..|.|+-.=.
T Consensus 15 l~aa~~l~~~~-G-~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 57 (195)
T 3ppb_A 15 LETALQLFVSQ-G-FHG-TSTATIAREAGVATGTLFHHFPSKEQLL 57 (195)
T ss_dssp HHHHHHHHHHT-C-STT-SCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 56666778888 4 654 4577899999999999999999987643
No 196
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=41.71 E-value=8.1 Score=27.60 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+.+....|... . |-. .....||...|++...|-.+|.|+-.
T Consensus 49 l~aA~~l~~~~-G-~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEV-G-YDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhc-C-hhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 45555668888 4 654 45678899999999999999999765
No 197
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=41.27 E-value=9.6 Score=26.34 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=
T Consensus 20 l~aa~~l~~~~-G-~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L 61 (212)
T 3knw_A 20 LDSGFHLVLRK-G-FVG-VGLQEILKTSGVPKGSFYHYFESKEAF 61 (212)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-Ccc-CCHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 45666678888 4 644 457788999999999999999998763
No 198
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.20 E-value=10 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||+..|++...|-..|.|+-.=.
T Consensus 22 l~aA~~l~~~~-G-~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~L~ 64 (216)
T 2oi8_A 22 KDHAWEQIATA-G-ASA-LSLNAIAKRMGMSGPALYRYFDGRDELI 64 (216)
T ss_dssp HHHHHHHHHHH-C-TTS-CCHHHHHHHTTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45555668888 4 654 4567889999999999999999887633
No 199
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=41.11 E-value=12 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999988764
No 200
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=40.56 E-value=19 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCchhhhhhhhhH
Q psy10851 35 TQVREALAKDTGLSVRVVQVWFQNQ 59 (159)
Q Consensus 35 ~~~r~~La~~l~l~~~~V~vWFqNR 59 (159)
......||..+||+.+.+...|+..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3457789999999999988888543
No 201
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=40.22 E-value=65 Score=20.46 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHhCCCchhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNS---CCPGHKTTQVREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~---~~~~yp~~~~r~~La~~l~l~~~~V~vWF 56 (159)
..++..++..+...|.. .+. +.+..+...+...+|++...|...|
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG-~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNG-FLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSS-CCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCC-eEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 46789999999999965 224 8899988888888899988877655
No 202
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=40.15 E-value=35 Score=27.60 Aligned_cols=51 Identities=12% Similarity=-0.049 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
.++..+..+|...|-.. - . ......+||..+|++...|+.+....+.|.|+
T Consensus 360 ~L~~rer~Vl~lr~~L~-~-~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLI-D-G-REHTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp SSCHHHHHHHHHHHHTT-C-C------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccC-C-C-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 45666677777666422 0 1 23467889999999999999999888888874
No 203
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=40.05 E-value=14 Score=25.34 Aligned_cols=44 Identities=7% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 15 l~aa~~l~~~~-G-~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~~ 58 (193)
T 2dg8_A 15 LAATLDLIAEE-G-IAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLLR 58 (193)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHh-C-hhh-ccHHHHHHHhCCCchhhheeCCCHHHHHH
Confidence 56667778888 4 643 45778899999999999999999876443
No 204
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=39.93 E-value=7.8 Score=26.28 Aligned_cols=44 Identities=9% Similarity=-0.014 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=..
T Consensus 14 l~aa~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (183)
T 1zk8_A 14 VETAAEIADAN-G-VQE-VTLASLAQTLGVRSPSLYNHVKGLQDVRK 57 (183)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-cCHHHHHHHcCCCchHHHHHcCCHHHHHH
Confidence 56667778887 4 553 45778899999999999999999876433
No 205
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=39.88 E-value=13 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|-
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999994
No 206
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=39.86 E-value=15 Score=25.43 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 17 l~aA~~lf~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (216)
T 3f0c_A 17 INAAQKRFAHY-G-LCK-TTMNEIASDVGMGKASLYYYFPDKETLF 59 (216)
T ss_dssp HHHHHHHHHHH-C-SSS-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc-C-CCc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 56666678888 4 654 3467889999999999999999987643
No 207
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.68 E-value=34 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCch
Q psy10851 10 QTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVR 50 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~ 50 (159)
++.||.+|+..|+..|..- +. +.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG-~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNG-SISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSS-CBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHcCCChh
Confidence 4679999999999999652 24 8899988888888886554
No 208
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.52 E-value=16 Score=26.08 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=37.4
Q ss_pred CCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 10 QTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 10 Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
|...+..+ +..-...|... + ......||..+|++..-|-..|.|+-.=....
T Consensus 8 ~~~~~r~~Il~aA~~l~~~~--G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~ 60 (213)
T 2g7g_A 8 VARLDRERIAEAALELVDRD--G---DFRMPDLARHLNVQVSSIYHHAKGRAAVVELV 60 (213)
T ss_dssp ---CCHHHHHHHHHHHHHHH--S---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc--C---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHH
Confidence 34556555 56666778877 5 45677899999999999999999977655544
No 209
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=39.32 E-value=45 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHhCCCchhhh-hh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSC---CPGHKTTQVREALAKDTGLSVRVVQ-VW 55 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~---~~~yp~~~~r~~La~~l~l~~~~V~-vW 55 (159)
....+|.+++..+...|... +. |.+..+-..+-...||+...+. ||
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG-~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISG-FITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTT-BEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCC-eECHHHHHHHHHHcCCCHHHHHHHH
Confidence 45679999999999999754 24 7788888887778899877655 66
No 210
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=39.12 E-value=5.9 Score=29.09 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+.+...+|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 54 l~AA~~lf~e~-G-~~~-~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll 96 (260)
T 2of7_A 54 RAATYGLIRQQ-G-YEA-TTVEQIAERAEVSPSTVLRYFPTREDIV 96 (260)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-ccHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 45566668888 4 654 4577889999999999999999976543
No 211
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=38.98 E-value=12 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998865
No 212
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=38.82 E-value=4.8 Score=29.73 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=6.8
Q ss_pred CCchhhhhhhhh
Q psy10851 47 LSVRVVQVWFQN 58 (159)
Q Consensus 47 l~~~~V~vWFqN 58 (159)
|.+..|--|+..
T Consensus 115 leEEaIl~W~~~ 126 (208)
T 2iu1_A 115 LEEEVIISWSEK 126 (208)
T ss_dssp SCHHHHHHHHHS
T ss_pred hhhHHHHHHHhc
Confidence 455566666643
No 213
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=38.79 E-value=24 Score=24.21 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 20 l~aA~~lf~~~-G-~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~L~ 62 (203)
T 3ccy_A 20 IERAAAMFARQ-G-YSE-TSIGDIARACECSKSRLYHYFDSKEAVL 62 (203)
T ss_dssp HHHHHHHHHHT-C-TTT-SCHHHHHHHTTCCGGGGTTTCSCHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCcCeeeeeeCCHHHHH
Confidence 56666778888 4 765 4577889999999999999999886533
No 214
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=38.71 E-value=13 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 215
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=38.56 E-value=54 Score=18.90 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTG--LSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~--l~~~~V~vWFq 57 (159)
...++..++..|...|..- +. +.+..+...+...+| ++...|..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDN-KLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCS-EEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4568999999999999652 13 778888888777777 45556666663
No 216
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=38.54 E-value=10 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~ 68 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..-...
T Consensus 21 l~aA~~lf~~~-G-~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~ 68 (221)
T 3c2b_A 21 LDQALRLLVEG-G-EKA-LTTSGLARAANCSKESLYKWFGDRDGLLAAMIT 68 (221)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C-ccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHH
Confidence 45556668888 4 654 457788999999999999999998765555443
No 217
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=38.01 E-value=21 Score=24.16 Aligned_cols=46 Identities=9% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 17 LKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 17 Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
-+......|... . |-. .....||...|++...+-..|.|+-.=..-
T Consensus 16 il~aa~~lf~~~-G-~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 61 (196)
T 3he0_A 16 ILAAAEQLIAES-G-FQG-LSMQKLANEAGVAAGTIYRYFSDKEHLLEE 61 (196)
T ss_dssp HHHHHHHHHHHH-C-TTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCcchHHHhcCCHHHHHHH
Confidence 366777778888 4 654 457789999999999999999998775443
No 218
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=37.89 E-value=13 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46789999999999999987764
No 219
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.65 E-value=87 Score=20.64 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh-----C--CCchhhhhhhhhHH
Q psy10851 10 QTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDT-----G--LSVRVVQVWFQNQR 60 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l-----~--l~~~~V~vWFqNRR 60 (159)
+..++..+...|..++..+ + ..+..+........ | ++...|..|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~-~-~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQN-P-TMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHC-T-TCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhC-c-chhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 4568888888888888777 5 66655433322111 5 78888999986443
No 220
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=37.63 E-value=14 Score=22.05 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCchhhhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqN 58 (159)
...||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999987
No 221
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=37.26 E-value=16 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFq 57 (159)
...+|..+|++...|..|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 56789999999999999983
No 222
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=37.24 E-value=26 Score=24.53 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 15 l~aA~~lf~~~-G-y~~-ts~~~IA~~AGvskgtlY~~F~sKe~L~ 57 (215)
T 1ui5_A 15 IGAAADLFDRR-G-YES-TTLSEIVAHAGVTKGALYFHFAAKEDLA 57 (215)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCchhhHhhCCCHHHHH
Confidence 56667778888 4 754 4477889999999999999999987643
No 223
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=37.14 E-value=19 Score=26.92 Aligned_cols=55 Identities=4% Similarity=-0.040 Sum_probs=40.9
Q ss_pred CCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 12 IRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 12 ~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
..+.++ +..-...|... . |-. .....||..+|++...+-..|.|+-.=.......
T Consensus 26 ~~tr~~Il~AA~~L~~e~-G-~~~-~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~av~~~ 81 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTE-G-VEA-ASMRRVAAELGAGTMSLYYYVPTKEDLVELMVDE 81 (267)
T ss_dssp EECHHHHHHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCHHHHHTTCCSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhc-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 566665 56666778888 4 654 4467889999999999999999988766554443
No 224
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=36.97 E-value=47 Score=21.07 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=27.3
Q ss_pred CCCCCHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhh
Q psy10851 10 QTIRLLNLK-VKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 10 Rt~~s~~Q~-~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWF 56 (159)
+.+++.... .++.....-. . ...++|...+|+..+|..|-
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~----~---s~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGL----I---TEREALDRYSLSEEEFALWR 70 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTS----S---CHHHHHHHTTCCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHcCC----C---CHHHHHHHhCCCHHHHHHHH
Confidence 445777764 4555443222 2 36688999999999999995
No 225
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=36.96 E-value=14 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 226
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.77 E-value=17 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||+.+|++...|..++.+++
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 227
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=36.64 E-value=21 Score=25.09 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+..-...|... . |-. .....||...|++...|-.+|.|+-.
T Consensus 20 l~AA~~lf~~~-G-~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 20 VEAAERVIARQ-G-LGG-LSHRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHH-C-TTC-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 45556678888 4 654 34678899999999999999999865
No 228
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=36.33 E-value=16 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 37 VREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
....||..+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356789999999999999987754
No 229
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=36.33 E-value=15 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 230
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=36.20 E-value=62 Score=22.23 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
.+|..+..+|.-.. . ++ ...+||..++++.+.|++...|-|.|..
T Consensus 142 ~Lt~rE~~vl~~l~--~--g~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 142 SLTGREQQVLQLTI--R--GL----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TSCHHHHHHHHHHT--T--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHH--c--CC----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46777777776542 2 13 2467899999999999998877777653
No 231
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.81 E-value=9.3 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=...
T Consensus 24 l~aa~~l~~~~-G-~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 68 (212)
T 1pb6_A 24 LSAALDTFSQF-G-FHG-TRLEQIAELAGVSKTNLLYYFPSKEALYIA 68 (212)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHTTSCHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-cch-hhHHHHHHHHCCChhHHHHhCCCHHHHHHH
Confidence 45556668888 4 643 457789999999999999999998764433
No 232
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.72 E-value=28 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 34 ~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
.......||...|++...|-..|.|+-.=..
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 61 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLR 61 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 5566788999999999999999999876433
No 233
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=35.68 E-value=44 Score=19.42 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhC-CCchhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTG-LSVRVVQVWFQ 57 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~-l~~~~V~vWFq 57 (159)
..+++.+...|...|..- +. +.+..+...+...+| ++...|..+|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDG-KISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSS-EEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 357888999999998652 13 778888877777776 55666666663
No 234
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=35.45 E-value=18 Score=25.66 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 36 l~aA~~lf~~~-G-~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~ 79 (230)
T 2iai_A 36 LSVAVQVFIER-G-YDG-TSMEHLSKAAGISKSSIYHHVTGKEELLR 79 (230)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-cCHHHHHHHHCCChhHHHHhCCCHHHHHH
Confidence 67777888888 4 754 45778899999999999999998876444
No 235
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=35.42 E-value=10 Score=26.95 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 45 l~AA~~lf~e~-G-~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~ 88 (214)
T 2guh_A 45 VDAAGRAFATR-P-YRE-ITLKDIAEDAGVSAPLIIKYFGSKEQLFD 88 (214)
T ss_dssp HHHHHHHHHHS-C-GGG-CCHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHc-C-hhh-cCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 45555668887 4 643 45677899999999999999999876443
No 236
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=34.76 E-value=14 Score=26.73 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=..
T Consensus 49 l~AA~~lf~~~-G-~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 92 (255)
T 3g1o_A 49 LATAENLLEDR-P-LAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLL 92 (255)
T ss_dssp HHHHHHHHTTS-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-Ccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 45556668777 3 543 45778899999999999999999876433
No 237
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=34.74 E-value=7.5 Score=21.26 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 14 LLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 14 s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
+.+--..|+.+.... + -.+.....+.|+++||+..-|..+|..
T Consensus 5 seeverklkefvrrh-q-eitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 5 SEEVERKLKEFVRRH-Q-EITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 444456676666666 4 566677888899999999888888853
No 238
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=34.52 E-value=7.4 Score=26.49 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 37 VREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
-...||..+|+...+++.|+...|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 467789999999999999986555
No 239
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.41 E-value=22 Score=24.68 Aligned_cols=42 Identities=7% Similarity=-0.037 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||...|++...|-.+|.|+-.=
T Consensus 36 l~aA~~l~~~~-G-~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEK-G-YSS-VGVDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHS-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-CCc-CcHHHHHHHhCCCcchhhhhCCCHHHH
Confidence 55566668888 4 654 457788999999999999999998763
No 240
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.17 E-value=13 Score=26.58 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||+..|++...|-..|.|+-.=..-
T Consensus 50 l~aA~~lf~e~-G-~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 50 LATAENLLEDR-P-LAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHHHHS-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHHHH
Confidence 44555668877 4 543 457788999999999999999998764433
No 241
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=33.67 E-value=15 Score=25.06 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
+......|... . |- ......||+..|++...|-.+|.|+-.=....
T Consensus 14 l~aa~~l~~~~-G-~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (206)
T 3dew_A 14 MEVATELFAQK-G-FY-GVSIRELAQAAGASISMISYHFGGKEGLYAAV 59 (206)
T ss_dssp HHHHHHHHHHH-C-GG-GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhcC-C-cc-cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 55666678877 4 53 34577889999999999999999987654443
No 242
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=33.67 E-value=96 Score=20.79 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=30.5
Q ss_pred CcCCCCCCCCC-CHHHHHHHHHHHhhc----CCCCCCHHHHH-----HHHHHhCCCch
Q psy10851 3 QYWFQNFQTIR-LLNLKVKLKTSFNSC----CPGHKTTQVRE-----ALAKDTGLSVR 50 (159)
Q Consensus 3 ~~~~kr~Rt~~-s~~Q~~~Le~~F~~~----~~~yp~~~~r~-----~La~~l~l~~~ 50 (159)
..+.-+..+.+ +..++..|...|..- +. +.+..+.. .+...+|+...
T Consensus 3 ~~~a~~~~~~~~s~~~~~~l~~~F~~~D~d~~G-~i~~~El~~~~~~~~l~~~g~~~~ 59 (195)
T 1qv0_A 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG-KITLDEIVSKASDDICAKLEATPE 59 (195)
T ss_dssp ----CCCSCCTTCHHHHHHHHHHHHHHCTTCSS-CBCHHHHHHHHHHTHHHHTTCCHH
T ss_pred chhhhhcCcccCCHHHHHHHHHHHhHcCCCCCC-cCcHHHHHHHHHHHHHHHcCCCcc
Confidence 33444555665 999999999999642 24 78888877 45566776554
No 243
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=33.63 E-value=67 Score=18.85 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWFQ 57 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWFq 57 (159)
.++..++..|...|..- +. +.+..+...+...+|+ +...|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGG-DISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSS-EECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 58889999999999652 14 7888888888888774 4556666663
No 244
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=33.47 E-value=19 Score=20.50 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHhC--CCchhhhhhhhhHH
Q psy10851 38 REALAKDTG--LSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~--l~~~~V~vWFqNRR 60 (159)
...||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467899999 99999999987654
No 245
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=33.18 E-value=28 Score=24.27 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 17 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (219)
T 2w53_A 17 LDAAEACFHEH-G-VAR-TTLEMIGARAGYTRGAVYWHFKNKSEVLA 60 (219)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCchHHhhcCCCHHHHHH
Confidence 56667778888 4 754 45778899999999999999999876443
No 246
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=33.07 E-value=19 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45799999999999999987654
No 247
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=33.06 E-value=18 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 248
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.48 E-value=80 Score=21.18 Aligned_cols=44 Identities=11% Similarity=-0.131 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 12 IRLLNLKVKLKTSFNS----CCPGHKTTQVREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~----~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
-+|..++.+|-.++.. + + +|+.. .||..+|++...|...+++=-
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~-~-~ps~~---~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGS-Y-FPTPN---QLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTC-C-SCCHH---HHHTTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC-C-CCCHH---HHHHHHCcCHHHHHHHHHHHH
Confidence 4677777777777653 3 5 78864 689999999999998886543
No 249
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=32.26 E-value=14 Score=25.66 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+.+-...|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 20 l~aA~~lf~~~-G-~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~ 62 (204)
T 2ibd_A 20 LDIAATLFAER-G-LRA-TTVRDIADAAGILSGSLYHHFDSKESMV 62 (204)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHTTSCHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHc-C-chh-cCHHHHHHHhCCCchhHHHhcCCHHHHH
Confidence 45556668888 4 664 4577889999999999999999987633
No 250
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=32.14 E-value=19 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCchhhhhhhhhHH
Q psy10851 37 VREALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWFqNRR 60 (159)
....||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 345899999999999999998765
No 251
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=32.10 E-value=45 Score=18.76 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy10851 13 RLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWF 56 (159)
Q Consensus 13 ~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWF 56 (159)
++..++..|...|..- +. +.+..+...+...+|. +...|..+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTG-SIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSS-EEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4678888899988542 13 7788888887777775 444555555
No 252
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.77 E-value=8.8 Score=26.76 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 18 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvsk~tlY~hF~sKe~L~~ 61 (200)
T 2hyj_A 18 LGRAAEIASEE-G-LDG-ITIGRLAEELEMSKSGVHKHFGTKETLQI 61 (200)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 44455668888 3 654 45778899999999999999999876443
No 253
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=31.73 E-value=15 Score=25.51 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=..-
T Consensus 29 l~aA~~lf~~~-G-~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 73 (214)
T 2zb9_A 29 LHAVGELLLTE-G-TAQ-LTFERVARVSGVSKTTLYKWWPSKGALALD 73 (214)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHCCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHH
Confidence 45555568877 4 644 357788999999999999999998765543
No 254
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.68 E-value=48 Score=22.79 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..-
T Consensus 17 l~aA~~lF~~~-G-y~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L~~a 61 (202)
T 2i10_A 17 LQTAMELFWRQ-G-YEG-TSITDLTKALGINPPSLYAAFGSKRDLFEK 61 (202)
T ss_dssp HHHHHHHHHHH-T-TTT-CCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCChHHHHHHhCCHHHHHHH
Confidence 56666778888 4 764 347788999999999999999998765443
No 255
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=31.58 E-value=23 Score=21.20 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCchhhhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqN 58 (159)
...||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456999999999999999875
No 256
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=31.55 E-value=16 Score=24.72 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=
T Consensus 16 l~aa~~lf~~~-G-~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 57 (197)
T 3rd3_A 16 LDTGYRIMAVK-G-FSG-VGLNEILQSAGVPKGSFYHYFKSKEQF 57 (197)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHC-C-ccc-CCHHHHHHHhCCChhhHHHHcCCHHHH
Confidence 56667778888 4 654 346778999999999999999998773
No 257
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=31.52 E-value=68 Score=20.31 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
-..++..+...|...|..- +. +.+..+...+....+++...|..+|.
T Consensus 5 ~w~ls~~~~~~l~~~F~~~D~d~dG-~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 5 EWAVPQSSRLKYRQLFNSHDKTMSG-HLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp CSSSCHHHHHHHHHHHHTTSCSSCC-EEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3468889999999999752 24 78888887777767788888777663
No 258
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=31.16 E-value=14 Score=23.67 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=9.5
Q ss_pred hhhhhhhhHHHH
Q psy10851 51 VVQVWFQNQRAK 62 (159)
Q Consensus 51 ~V~vWFqNRR~k 62 (159)
.|+||.||--.-
T Consensus 53 dvkvwmqnledl 64 (127)
T 2jpf_A 53 DVKVWMQNLEDL 64 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 699999996543
No 259
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=31.15 E-value=38 Score=24.58 Aligned_cols=57 Identities=7% Similarity=-0.071 Sum_probs=40.5
Q ss_pred CCCCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 10 QTIRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 10 Rt~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
|..++.++ +..-...|... . |-. .....||+.+|++...|-..|.|+-.=.......
T Consensus 3 r~~~tr~~Il~AA~~l~~~~-G-~~~-~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~ 60 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAE-G-LDA-LSMRRLAQELKTGHASLYAHVGNRDELLDLVFDI 60 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhC-C-ccc-cCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHH
Confidence 34455555 45666677777 3 543 4577889999999999999999988766554443
No 260
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=30.92 E-value=44 Score=22.57 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhh-----c-CCCCCCHHHHHHHHHHhCCCch
Q psy10851 12 IRLLNLKVKLKTSFNS-----C-CPGHKTTQVREALAKDTGLSVR 50 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~-----~-~~~yp~~~~r~~La~~l~l~~~ 50 (159)
.+|.+|+..|+..|.. + +. +.+..+...+.+.+|+..+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG-~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDG-DVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSS-CEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCC-eECHHHHHHHHHHcCCCCC
Confidence 4799999999998853 2 13 7888888888888886543
No 261
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=30.90 E-value=93 Score=21.52 Aligned_cols=49 Identities=18% Similarity=0.003 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---CCchhhhhhhhhHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG---LSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~---l~~~~V~vWFqNRR~k~ 63 (159)
..+|+.+..+|.-+... +.....+.+||..++ ++.+.|++...|=|.|.
T Consensus 144 ~~Lt~rE~~vl~~l~~~----~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAEN----AGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp CCCCHHHHHHHHHHHHT----TTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHC----CCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 45899999999766543 233346788999999 99999998887776654
No 262
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=30.90 E-value=29 Score=21.79 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCchhhhhhhhhH
Q psy10851 35 TQVREALAKDTGLSVRVVQVWFQNQ 59 (159)
Q Consensus 35 ~~~r~~La~~l~l~~~~V~vWFqNR 59 (159)
......||..+||+.+.+...|+..
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467788999999999888887543
No 263
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.68 E-value=11 Score=26.20 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=9.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+......|... . |-. .....||...|++...|-.+|.|+-.
T Consensus 36 l~aa~~l~~~~-G-~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 36 LTAARVCFAER-G-FDA-TSLRRIAETAGVDQSLVHHFYGTKEN 76 (212)
T ss_dssp HHHHHHHC------------------------------CCC-CH
T ss_pred HHHHHHHHHHc-C-ccc-ccHHHHHHHcCCCHHHHHHHhCCHHH
Confidence 56666677777 4 544 55778999999999999999988755
No 264
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.62 E-value=27 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
+..+..+...+ +-.......||..+||+.+.+...|+.
T Consensus 9 ~~~~~~~i~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNN---IAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTS---TTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444433 333456788999999999998888854
No 265
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=30.35 E-value=29 Score=23.61 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . | .......||...|++...|-..|.|+-.=..
T Consensus 14 l~AA~~l~~~~-G-~-~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 57 (195)
T 3frq_A 14 LEAATVVLKRC-G-P-IEFTLSGVAKEVGLSRAALIQRFTNRDTLLV 57 (195)
T ss_dssp HHHHHHHHHHH-H-H-HHCCHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHhh-C-c-ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 55566667776 3 4 2345778899999999999999999876433
No 266
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=30.21 E-value=8.5 Score=27.86 Aligned_cols=45 Identities=4% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+.....+|... . |-. .....||+..|++...|-.+|.|+-.=..-
T Consensus 52 l~aA~~lf~~~-G-~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~ 96 (245)
T 3aqt_A 52 ITSARTLMAER-G-VDN-VGIAEITEGANIGTGTFYNYFPDREQLLQA 96 (245)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHHH
Confidence 45566668887 4 644 457788999999999999999998765443
No 267
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=30.21 E-value=15 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 16 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 59 (196)
T 3col_A 16 QDAVAAIILAE-G-PAG-VSTTKVAKRVGIAQSNVYLYFKNKQALID 59 (196)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CCHHHHHHHhCCcHHHHHHHhCCHHHHHH
Confidence 56666778877 4 533 45678899999999999999999876443
No 268
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=30.01 E-value=12 Score=25.58 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 17 l~aA~~lf~~~-G-~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (203)
T 3b81_A 17 ANKIWDIFIAN-G-YEN-TTLAFIINKLGISKGALYHYFSSKEECAD 60 (203)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CcHHHHHHHhCCCchhHHHHcCCHHHHHH
Confidence 56666678888 4 654 45778899999999999999999876443
No 269
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.79 E-value=11 Score=26.85 Aligned_cols=49 Identities=6% Similarity=0.027 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~~~ 69 (159)
+..-...|... . |-. .....||+..|++...|-..|.|+-.=.......
T Consensus 46 l~aA~~lf~~~-G-~~~-~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~ 94 (225)
T 2id3_A 46 LLAAGDALAAD-G-FDA-LDLGEIARRAGVGKTTVYRRWGTPGGLAADLLAD 94 (225)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 44555568877 4 543 4577899999999999999999987755554433
No 270
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=29.76 E-value=31 Score=23.20 Aligned_cols=43 Identities=12% Similarity=-0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=.
T Consensus 8 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 50 (194)
T 3bqz_B 8 LGVAKELFIKN-G-YNA-TTTGEIVKLSESSKGNLYYHFKTKENLF 50 (194)
T ss_dssp HHHHHHHHHHH-T-TTT-CCHHHHHHHTTCCHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHc-C-Ccc-CCHHHHHHHhCCCchhHHHhCCCHHHHH
Confidence 56666778777 4 654 4577899999999999999999987633
No 271
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=29.76 E-value=83 Score=20.23 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=34.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy10851 8 NFQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWFQ 57 (159)
Q Consensus 8 r~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWFq 57 (159)
++++.++..++..|...|..- +. +.+..+...+...+|+ +...|...|.
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDG-FIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTT-CCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCC-eECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356789999999999999752 14 7888888777666664 4445555553
No 272
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=29.72 E-value=21 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+......|... . |-. .....||...|++...|-..|.|+-.
T Consensus 13 l~aA~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEH-G-YDN-VTVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHS-C-GGG-CCHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhc-C-ccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 56666778888 4 643 45678899999999999999988754
No 273
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.60 E-value=23 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999988765
No 274
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=29.45 E-value=4.2 Score=28.21 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . | .......||...|++...|-..|.|+-.=..
T Consensus 20 l~aa~~l~~~~-G-~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 63 (215)
T 3e7q_A 20 IEATLACLKRH-G-F-QGASVRKICAEAGVSVGLINHHYDGKDALVA 63 (215)
T ss_dssp HHHHHHHHHHH-H-H-HHCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-c-ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 44555556666 3 3 3345778999999999999999999876433
No 275
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=29.33 E-value=27 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 32 l~aA~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 75 (217)
T 3mvp_A 32 LQVAKDLFSDK-T-YFN-VTTNEIAKKADVSVGTLYAYFASKEDILT 75 (217)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-cCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 45555668877 4 533 45677899999999999999999876433
No 276
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.17 E-value=94 Score=19.81 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh-CCCchhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDT-GLSVRVVQVWFQ 57 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l-~l~~~~V~vWFq 57 (159)
..+|.+.-..+-..|++. -++...-..||.+| |-++.||+.=||
T Consensus 34 vlWTRe~DR~IL~~cQ~~---G~s~~tFa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQ---GAQPHTFSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp SSSCHHHHHHHHHHHHHT---TSCTTTHHHHHHHHSSCCHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhc---CCChhHHHHHHHHHccCCHHHHHHHHH
Confidence 456777766666777766 35556667799999 599999998885
No 277
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=29.03 E-value=7.6 Score=26.05 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . | .......||...|++...|-.+|.|+-.=..-
T Consensus 20 l~aa~~lf~~~-G-~-~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a 64 (156)
T 3ljl_A 20 MDAVVDQLLRL-G-Y-DKMSYTTLSQQTGVSRTGISHHFPKKTDFTAA 64 (156)
T ss_dssp HHHHHHHHHHT-H-H-HHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHh-C-h-hhcCHHHHHHHHCCCHHHHHHHCCCHHHHHHH
Confidence 45555667776 3 4 33457788999999999999999998764433
No 278
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=28.93 E-value=1.2e+02 Score=21.33 Aligned_cols=49 Identities=20% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh-----CCCchhhhhhhhhHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDT-----GLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l-----~l~~~~V~vWFqNRR~k~ 63 (159)
..+|+.+..+|.-+.... .....+.+||..+ +++.+.|++.-.|=|.|.
T Consensus 152 ~~LT~rE~~vL~~l~~~~----~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL 205 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKP----RQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKV 205 (238)
T ss_dssp ECCCHHHHHHHHHHHHST----TCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHCC----CceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHh
Confidence 468999999998776542 2234578889999 899999998876666554
No 279
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=28.81 E-value=32 Score=21.99 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|=
T Consensus 4 i~e~A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYD 22 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999993
No 280
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.80 E-value=32 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|=
T Consensus 5 i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999993
No 281
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=28.73 E-value=24 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 56789999999999999987764
No 282
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=28.57 E-value=1.2e+02 Score=19.65 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC---Cchhhhhhhhh
Q psy10851 12 IRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL---SVRVVQVWFQN 58 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l---~~~~V~vWFqN 58 (159)
.++..++..|...|..- +. +.+..+...+...+|+ +...|...|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADG-IIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCC-cCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 67889999999999652 24 7888888888887766 55567766653
No 283
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.56 E-value=27 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCchhhhhhhhhH
Q psy10851 37 VREALAKDTGLSVRVVQVWFQNQ 59 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWFqNR 59 (159)
....||..+|++...|..|+.|+
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 36788999999999999999876
No 284
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=28.53 E-value=24 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCchhhhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqN 58 (159)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999987
No 285
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=28.50 E-value=1e+02 Score=20.05 Aligned_cols=49 Identities=6% Similarity=0.042 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWF 56 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWF 56 (159)
.+.+..++..++..|...|..- +. +.+..+...+...+|+ +...|...|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSG-TIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCS-EECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCC-cCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457899999999999999652 14 7788888777777765 334444433
No 286
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.33 E-value=33 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 32 HKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 32 yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
+-.......||..+||+.+.+...|+.
T Consensus 20 ~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 20 IEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333456788999999999988877754
No 287
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=28.09 E-value=35 Score=21.37 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCchhhhhhhhhH
Q psy10851 36 QVREALAKDTGLSVRVVQVWFQNQ 59 (159)
Q Consensus 36 ~~r~~La~~l~l~~~~V~vWFqNR 59 (159)
.....||..+||+.+.+...|+..
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 457788999999999888888643
No 288
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=28.08 E-value=34 Score=23.14 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||+..|++...|-.+|.|+-.=..-
T Consensus 13 l~aA~~lf~~~-G-~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~a 57 (192)
T 2zcm_A 13 IDNAITLFSEK-G-YDG-TTLDDISKSVNIKKASLYYHYDNKEEIYRK 57 (192)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHTTCCHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 56666778888 4 754 457788999999999999999998765444
No 289
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=28.05 E-value=23 Score=22.96 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46789999999999999998764
No 290
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=28.03 E-value=17 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
+..-...|... . |- ......||...|++...|-..|.|+-.=..-.
T Consensus 36 l~aA~~lf~~~-G-~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 81 (226)
T 2pz9_A 36 VAAAKEEFARH-G-IA-GARVDRIAKQARTSKERVYAYFRSKEALYAHV 81 (226)
T ss_dssp HHHHHHHHHHH-H-HH-HCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHh-C-cc-cCcHHHHHHHHCCChHHHHHHcCCHHHHHHHH
Confidence 55566667777 3 53 23577889999999999999999987754443
No 291
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.86 E-value=26 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999987765
No 292
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=27.85 E-value=28 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=.
T Consensus 13 l~aa~~l~~~~-G-~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 55 (199)
T 3qbm_A 13 VAQAAALFNVS-G-YAG-TAISDIMAATGLEKGGIYRHFESKEQLA 55 (199)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHh-C-cCc-CCHHHHHHHhCCCccHHHHhCCCHHHHH
Confidence 55566678888 4 654 4577889999999999999999987643
No 293
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=27.71 E-value=22 Score=25.58 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=36.0
Q ss_pred CCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHH
Q psy10851 12 IRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66 (159)
Q Consensus 12 ~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~ 66 (159)
.-+..+ +..-...|... . |- ......||+..|++...|-..|.|+-.=..-.
T Consensus 17 ~~~r~~Il~AA~~lf~~~-G-~~-~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av 69 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSEL-G-FS-DAKLEAIAKKSGMSKRMIHYHFGDKRGLYICC 69 (251)
T ss_dssp CCCHHHHHHHHHHHHHHH-H-HH-HCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHc-C-cc-ccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHH
Confidence 334443 45556667776 3 43 23467789999999999999999987655443
No 294
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.52 E-value=37 Score=22.56 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||...|++...+-..|.|+-.=..
T Consensus 14 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (188)
T 3qkx_A 14 FSATDRLMARE-G-LNQ-LSMLKLAKEANVAAGTIYLYFKNKDELLE 57 (188)
T ss_dssp HHHHHHHHHHS-C-STT-CCHHHHHHHHTCCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhc-C-ccc-CCHHHHHHHhCCCcchHHHHcCCHHHHHH
Confidence 56666778888 4 644 55778999999999999999999876443
No 295
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=27.51 E-value=35 Score=23.59 Aligned_cols=47 Identities=17% Similarity=0.057 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk~~ 67 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..-..
T Consensus 17 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~ 63 (210)
T 2wui_A 17 LDAAERVFLEK-G-VGT-TAMADLADAAGVSRGAVYGHYKNKIEVCLAMC 63 (210)
T ss_dssp HHHHHHHHHHS-C-TTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-cCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 45555668888 4 764 34678899999999999999999887555443
No 296
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=27.47 E-value=26 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987764
No 297
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=27.25 E-value=26 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999987754
No 298
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.10 E-value=23 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999988775
No 299
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=26.83 E-value=16 Score=25.38 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |- ......||...|++...|-..|.|+-.=..
T Consensus 18 l~aA~~l~~e~-G-~~-~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~ 61 (198)
T 3cjd_A 18 IDLAEAQIEAE-G-LA-SLRARELARQADCAVGAIYTHFQDLNALTL 61 (198)
T ss_dssp HHHHHHHHHHH-C-GG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhC-C-hh-hcCHHHHHHHhCCCccHHHHHhCCHHHHHH
Confidence 56666678887 4 54 345778899999999999999999876443
No 300
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=26.83 E-value=39 Score=22.93 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||...|++...|-.+|.|+-.=...
T Consensus 10 l~aa~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (185)
T 2yve_A 10 LRTAIDYIGEY-S-LET-LSYDSLAEATGLSKSGLIYHFPSRHALLLG 54 (185)
T ss_dssp HHHHHHHHHHS-C-STT-CCHHHHHHHHCCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-hhh-ccHHHHHHHhCCChHHHHHhCcCHHHHHHH
Confidence 56666678888 4 643 457788999999999999999998764433
No 301
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=26.79 E-value=25 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 302
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.78 E-value=1.1e+02 Score=18.31 Aligned_cols=44 Identities=23% Similarity=0.080 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQV 54 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~v 54 (159)
.+..+|.++...|+...... + --+...=..||..+|=+..+|+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~-p-~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKF-P-GGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHS-C-TTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-C-CCCCcHHHHHHHHhCCCHHHHHH
Confidence 35579999999999997654 3 22333446688888877777764
No 303
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=26.33 E-value=27 Score=20.54 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCchhhhhhh
Q psy10851 37 VREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWF 56 (159)
....+|..||++..-|..|-
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35678999999999999997
No 304
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=26.33 E-value=1.3e+02 Score=19.20 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWF 56 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWF 56 (159)
.+..++..++..|...|... +. +.+..+...+...+|+ +...|+..|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G-~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDG-FLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSS-EECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46789999999999999752 14 7888888887777764 444555554
No 305
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=26.08 E-value=24 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||+..|++...|-..|.|+..=..
T Consensus 16 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 59 (216)
T 3s5r_A 16 LDAATTLFAEQ-G-IAA-TTMAEIAASVGVNPAMIHYYFKTRDSLLD 59 (216)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHTTTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHHCCCHHHHHHHcCCHHHHHH
Confidence 56666778888 4 654 45778899999999999999999876443
No 306
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.06 E-value=38 Score=22.60 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh-HHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN-QRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN-RR~ 61 (159)
+......|... . |-. .....||...|++...|-..|.| +-.
T Consensus 12 l~aa~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 12 LHTASRLSQLQ-G-YHA-TGLNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHc-C-ccc-cCHHHHHHHHCCCchhHHHHccccHHH
Confidence 56667778888 4 644 44678899999999999999998 654
No 307
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.90 E-value=21 Score=22.92 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
....++..++..|...|..- +. +.+..+...+...+|++...|..+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG-~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSS-FISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSS-EEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCC-eEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45578888999999998652 14 78888888877778888888887764
No 308
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.88 E-value=60 Score=22.82 Aligned_cols=44 Identities=14% Similarity=-0.046 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 12 IRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 12 ~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
.+|+.+..+|..+.. . + ...+||..++++.+.|++..++=|.|.
T Consensus 159 ~Lt~rE~~vL~~l~~-g---~----s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQIIKLLGS-G---A----SNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHHHHHHHTT-T---C----CHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHc-C---C----CHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 478888888876432 2 2 357789999999999998877666553
No 309
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=25.73 E-value=52 Score=22.45 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 13 l~aA~~lf~~~-G-~~~-ts~~~IA~~aGvs~gtlY~~F~sKe~L~ 55 (197)
T 2gen_A 13 LQAALACFSEH-G-VDA-TTIEMIRDRSGASIGSLYHHFGNKERIH 55 (197)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHCCCHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHHCCChHHHHHHCCCHHHHH
Confidence 55666778888 4 754 4577889999999999999999987643
No 310
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=25.57 E-value=20 Score=24.87 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=32.2
Q ss_pred HHHHHHHH-hhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSF-NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F-~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+.++...| ... . |-. .....||...|++...+-..|.|+-.=.
T Consensus 25 ~~Aa~~lF~~~~-g-~~~-~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~ 68 (185)
T 3o60_A 25 YTVLERFYVEDR-T-FES-ISIKDLCEQARVSRATFYRHHKEIIQVI 68 (185)
T ss_dssp HHHHHHHHHTTC-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHhcC-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45666675 666 3 554 4577889999999999999999886533
No 311
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=25.53 E-value=1.2e+02 Score=19.89 Aligned_cols=44 Identities=16% Similarity=-0.121 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSC---CPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~---~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
+--++..+..+|-..+... ++ +|+. ..||..+|++...|..-++
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~-~ps~---~~LA~~l~~s~~~V~~~l~ 73 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVL-FPTP---AELAERMTVSAAECMEMVR 73 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCS-SCCH---HHHHHTSSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCC-CCCH---HHHHHHHCcCHHHHHHHHH
Confidence 3467888888887776542 14 6764 5689999999998876653
No 312
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=25.37 E-value=16 Score=25.17 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+......|... . |-. .....||...|++...+-..|.|+-.
T Consensus 16 l~aA~~lf~~~-G-~~~-~s~~~Ia~~Agvskgt~Y~yF~sKe~ 56 (197)
T 2f07_A 16 LQAAIEVISEK-G-LDK-ASISDIVKKAGTAQGTFYLYFSSKNA 56 (197)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTSCHHHHHHHCSSSTT
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCchHHHHhCCCHHH
Confidence 56666778888 4 754 34678899999999999999998754
No 313
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=25.29 E-value=28 Score=24.64 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||...|++...|-..|.|+..=.
T Consensus 41 l~AA~~lf~~~-G-~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (237)
T 3kkd_A 41 LDAAMRLIVRD-G-VRA-VRHRAVAAEAQVPLSATTYYFKDIDDLI 83 (237)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCTTTC-----CHHHHH
T ss_pred HHHHHHHHHhc-C-hhh-cCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 45555668888 4 643 4567889999999999999999987633
No 314
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.28 E-value=29 Score=22.07 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999998776
No 315
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=25.07 E-value=60 Score=22.66 Aligned_cols=49 Identities=6% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCCC-HHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 10 QTIRLLNLKVKLKTSFNSC-CPGHKT-TQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 10 Rt~~s~~Q~~~Le~~F~~~-~~~yp~-~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
|..||.++.......-... .+-+-. .....+||..+|++...+..|-..
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 5568988877654332111 010110 235778999999999999999763
No 316
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=25.04 E-value=52 Score=22.13 Aligned_cols=50 Identities=4% Similarity=-0.023 Sum_probs=36.7
Q ss_pred CCCHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 12 IRLLNL-KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 12 ~~s~~Q-~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
..|.++ +..-...|... . |-. .....||...|++...|-..|.|+..=..
T Consensus 6 ~~tRe~Il~aA~~lf~~~-G-~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L~~ 56 (178)
T 4hku_A 6 RLSQEIILNMAEKIIYEK-G-MEK-TTLYDIASNLNVTHAALYKHYRNKEDLFQ 56 (178)
T ss_dssp CCCHHHHHHHHHHHHHHH-C-GGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-C-ccc-ccHHHHHHHhCcCHhHHHHHCCCHHHHHH
Confidence 344444 45566778888 4 643 45778899999999999999999876443
No 317
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.69 E-value=33 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchh----hhhhhhhHH
Q psy10851 38 REALAKDTGLSVRV----VQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~----V~vWFqNRR 60 (159)
...||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 56789999999999 999987754
No 318
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.57 E-value=40 Score=22.98 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=
T Consensus 20 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 20 LDVALRLFSQQ-G-VSA-TSLAEIANAAGVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCceeehhhcCCHHHH
Confidence 45666678888 4 654 457788999999999999999998653
No 319
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.51 E-value=47 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+......|... . |-. .....||+..|++...|-.+|.|+-.=.
T Consensus 9 l~aA~~lf~~~-G-~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEK-G-YEA-TSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45566678888 4 664 3467789999999999999999988754
No 320
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=24.50 E-value=92 Score=22.09 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhh
Q psy10851 16 NLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVV 52 (159)
Q Consensus 16 ~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V 52 (159)
.-+.+|...=... +|.+......||..|+|+..+|
T Consensus 26 ~li~~L~~~Q~~~--G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 26 AIMPLLRRVQQEE--GWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp GHHHHHHHHHHHH--SSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHhCcCHHHH
Confidence 4456666555556 4999999999999999999876
No 321
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.49 E-value=41 Score=22.93 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|=
T Consensus 7 I~evA~~~Gvs~~tLR~ye 25 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYD 25 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999993
No 322
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.41 E-value=43 Score=23.05 Aligned_cols=45 Identities=7% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||+..|++...|-.+|.|+-.=..-
T Consensus 14 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~ 58 (202)
T 2d6y_A 14 FEAAVAEFARH-G-IAG-ARIDRIAAEARANKQLIYAYYGNKGELFAS 58 (202)
T ss_dssp HHHHHHHHHHH-T-TTS-CCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 56666778888 4 644 447788999999999999999998765443
No 323
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.41 E-value=31 Score=23.03 Aligned_cols=44 Identities=5% Similarity=-0.031 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=..
T Consensus 16 l~aa~~l~~~~-G-~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 59 (191)
T 3on4_A 16 LAVAEALIQKD-G-YNA-FSFKDIATAINIKTASIHYHFPSKEDLGV 59 (191)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCcchhhhcCCCHHHHHH
Confidence 56666678777 3 543 45778899999999999999999876433
No 324
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.35 E-value=42 Score=22.47 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|=
T Consensus 3 I~e~A~~~gvs~~tLR~ye 21 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYE 21 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4678999999999999993
No 325
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=24.32 E-value=73 Score=22.35 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHH---HhhcCCCCC-CHHHHHHHHHHhCCC-chhhhhhhh
Q psy10851 12 IRLLNLKVKLKTS---FNSCCPGHK-TTQVREALAKDTGLS-VRVVQVWFQ 57 (159)
Q Consensus 12 ~~s~~Q~~~Le~~---F~~~~~~yp-~~~~r~~La~~l~l~-~~~V~vWFq 57 (159)
.+|..|..+++.+ .... . ++ + ..+||..+|++ ...|..|+.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~-g-~~ps---~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQT-G-MPPT---RAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-S-SCCC---HHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHh-C-CCcc---HHHHHHHhCCCChHHHHHHHH
Confidence 3677776555444 4555 3 63 5 45799999999 899999974
No 326
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=24.26 E-value=34 Score=22.61 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |- ......||+..|++...|-..|.|+-.=...
T Consensus 10 l~aa~~l~~~~-G-~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (170)
T 3egq_A 10 IEAALRLYMKK-P-PH-EVSIEEIAREAKVSKSLIFYHFESKQKLLEE 54 (170)
T ss_dssp HHHHHHHHTTS-C-GG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhc-C-Cc-cCcHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 45555667777 4 53 3457788999999999999999998764443
No 327
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=24.15 E-value=1.2e+02 Score=24.92 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy10851 9 FQTIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWF 56 (159)
Q Consensus 9 ~Rt~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWF 56 (159)
.+..|+.+|+..|+..|..- +. +.+..+...+.+.+|+ +..+|+..|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG-~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDG-TITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSS-EECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCC-EECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46789999999999999642 24 8889988888888875 445555554
No 328
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.15 E-value=41 Score=22.80 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWF 56 (159)
+.++|+.+|++.+.|+.|=
T Consensus 5 I~e~A~~~gvs~~tLR~Ye 23 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYE 23 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999993
No 329
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=24.00 E-value=37 Score=23.13 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
+..-...|... . |-. .....||...|++...|-.+|.|+-.
T Consensus 14 l~aA~~lf~~~-G-~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 54 (199)
T 2o7t_A 14 ITTTCNLYRTH-H-HDS-LTMENIAEQAGVGVATLYRNFPDRFT 54 (199)
T ss_dssp HHHHHHHHHHS-C-GGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHC-C-Ccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 45556668777 4 543 45778899999999999999998765
No 330
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.93 E-value=53 Score=22.53 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||...|++...|-.+|.|+-.=..-
T Consensus 17 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~~ 61 (210)
T 2xdn_A 17 IEAAERAFYKR-G-VAR-TTLADIAELAGVTRGAIYWHFNNKAELVQA 61 (210)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHHTCCTTHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CcHHHHHHHHCCChHHHHHHhCCHHHHHHH
Confidence 45556668888 4 765 447788999999999999999998764443
No 331
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=23.74 E-value=50 Score=22.17 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+......|... . |-. .....||...|++...|-..|.|+..=..-
T Consensus 14 l~aA~~l~~~~-G-~~~-~t~~~IA~~Agvs~~tly~~F~sK~~L~~a 58 (194)
T 3dpj_A 14 VAAADELFYRQ-G-FAQ-TSFVDISAAVGISRGNFYYHFKTKDEILAE 58 (194)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHHCCChHHHHHHcCCHHHHHHH
Confidence 45556668877 4 654 456788999999999999999998764433
No 332
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.59 E-value=32 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |-. .....||+..|++...|-..|.|+-.=..
T Consensus 22 l~aa~~l~~~~-G-~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~ 65 (211)
T 3him_A 22 RAAAIEVFAAK-G-YGA-TTTREIAASLDMSPGAVYPHYKTKESLLY 65 (211)
T ss_dssp HHHHHHHHHHH-C-STT-CCHHHHHHHTTCCTTSSTTTCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-CCc-CCHHHHHHHhCCCcChhhhcCCCHHHHHH
Confidence 55566668888 4 654 45778899999999999999999876443
No 333
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.52 E-value=22 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 20 l~aA~~lf~~~-G-~~~-~s~~~IA~~agvsk~tlY~yF~sKe~L~~ 63 (199)
T 3crj_A 20 MQATYRALREH-G-YAD-LTIQRIADEYGKSTAAVHYYYDTKDDLLA 63 (199)
T ss_dssp HHHHHHHHHHH-T-TTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCChhHHhhhcCCHHHHHH
Confidence 45556668888 4 765 34678899999999999999999876444
No 334
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.03 E-value=35 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|-.++|
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999887765
No 335
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.80 E-value=1.6e+02 Score=18.86 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhCC--Cchhhhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTGL--SVRVVQVWFQN 58 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~l--~~~~V~vWFqN 58 (159)
..++..++..|...|..- +. +.+..+...+...+|+ +...|...|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDG-FVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSS-SCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 568999999999998652 24 8888888888877764 55567776653
No 336
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=22.77 E-value=38 Score=22.63 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k 62 (159)
+......|... . |-. .....||...|++...|-..|.|+-.=
T Consensus 14 l~aa~~l~~~~-G-~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 55 (194)
T 2g7s_A 14 LQCARTLIIRG-G-YNS-FSYADISQVVGIRNASIHHHFPSKSDL 55 (194)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHCCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-ccc-CCHHHHHHHhCCCchHHHHHcCCHHHH
Confidence 45555667777 4 643 457789999999999999999998763
No 337
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.73 E-value=47 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~rk 65 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=..-
T Consensus 13 l~aA~~l~~~~-G-~~~-~s~~~IA~~agvs~~tly~~F~sK~~L~~a 57 (180)
T 2fd5_A 13 LGAATQALLER-G-AVE-PSVGEVMGAAGLTVGGFYAHFQSKDALMLE 57 (180)
T ss_dssp HHHHHHHHHHH-T-TTS-CCHHHHHHHTTCCGGGGGGTCSCHHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCccHHHHHCCCHHHHHHH
Confidence 55566668888 4 754 457788999999999999999998764443
No 338
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=22.57 E-value=1.7e+02 Score=19.25 Aligned_cols=43 Identities=7% Similarity=-0.056 Sum_probs=30.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchh
Q psy10851 7 QNFQTIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRV 51 (159)
Q Consensus 7 kr~Rt~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~ 51 (159)
++.+..+|.+++..|-..+... . .+.......|+..+||-...
T Consensus 1 ~~~~~~lt~~e~~~l~~~~~~~-~-~~~~~~~~~l~~~tG~R~~E 43 (170)
T 1aih_A 1 ETELAFLYERDIYRLLAECDNS-R-NPDLGLIVRICLATGARWSE 43 (170)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTS-S-STTHHHHHHHHHHHCCCHHH
T ss_pred CCccccCCHHHHHHHHHHHhcc-c-chhHHHHHHHHHHhCCcHHH
Confidence 3456789999999998888766 3 55555566677777765544
No 339
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=22.50 E-value=35 Score=23.67 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCchhhhhhhhhHHH
Q psy10851 37 VREALAKDTGLSVRVVQVWFQNQRA 61 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWFqNRR~ 61 (159)
...+||..+|++...|..|..+.+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 5678999999999999999976654
No 340
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.49 E-value=69 Score=21.73 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKM 63 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~ 63 (159)
+..-...|... . |-. .....||...|++...|-..|.|+-.=.
T Consensus 18 l~aA~~lf~~~-G-~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L~ 60 (197)
T 2hyt_A 18 LATARKVFSER-G-YAD-TSMDDLTAQASLTRGALYHHFGDKKGLL 60 (197)
T ss_dssp HHHHHHHHHHH-C-TTT-CCHHHHHHHHTCCTTHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 56666678888 4 754 3467889999999999999999986533
No 341
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.49 E-value=1.6e+02 Score=20.37 Aligned_cols=50 Identities=16% Similarity=-0.010 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC-----CCchhhhhhhhhHHHHHH
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTG-----LSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~-----l~~~~V~vWFqNRR~k~r 64 (159)
..+|..+..+|.-+.... -....+.+||..++ ++.+.|++.-.|=|.|..
T Consensus 158 ~~Lt~rE~~vL~~l~~g~----~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 212 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAEHK----TAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE 212 (233)
T ss_dssp CCCCHHHHHHHHHHHHTT----TCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHhCC----CCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhc
Confidence 458999999998776542 22234677888887 899999988777776653
No 342
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.34 E-value=47 Score=20.79 Aligned_cols=42 Identities=5% Similarity=-0.111 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhh
Q psy10851 11 TIRLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 11 t~~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWF 56 (159)
..+|..|+.+|..++...++ - -....||..++|+...|..=.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~-g---i~qkeLa~~~~l~~~tvt~iL 57 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNK-G---IWSRDVRYKSNLPLTEINKIL 57 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTT-C---EEHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCC-C---cCHHHHHHHHCCCHHHHHHHH
Confidence 46789999999999975412 1 346678999999988876544
No 343
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=22.16 E-value=40 Score=16.06 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=11.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhc
Q psy10851 6 FQNFQTIRLLNLKVKLKTSFNSC 28 (159)
Q Consensus 6 ~kr~Rt~~s~~Q~~~Le~~F~~~ 28 (159)
+||.|..-. ..|+.+|+.-
T Consensus 1 ~KR~R~~g~----~TLesFFK~L 19 (26)
T 2zvk_U 1 CKRPRPEGM----QTLESFFKPL 19 (26)
T ss_pred CCCCCcccc----ccHHHHhccC
Confidence 466665333 3788888654
No 344
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.12 E-value=49 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCchhhhhhh
Q psy10851 37 VREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 37 ~r~~La~~l~l~~~~V~vWF 56 (159)
.+.++|+.+|++.+.|+.|=
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye 37 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYD 37 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHHH
Confidence 36789999999999999993
No 345
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=22.07 E-value=61 Score=21.04 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 13 RLLNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 13 ~s~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
++..|...++.....- . - .+.....||..++++...+..|++
T Consensus 1 ~~~~~~~l~~~i~~~~-~-~-~p~~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLF-G-D-EPWWVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp CCHHHHHHHHHHGGGC-S-S-SCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-H-h-CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3455655555554332 1 1 122455899999999999999974
No 346
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=21.61 E-value=38 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhHH
Q psy10851 38 REALAKDTGLSVRVVQVWFQNQR 60 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vWFqNRR 60 (159)
...||..+|++...|..|..+++
T Consensus 84 q~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998764
No 347
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=21.44 E-value=53 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCchhhhhh
Q psy10851 38 REALAKDTGLSVRVVQVW 55 (159)
Q Consensus 38 r~~La~~l~l~~~~V~vW 55 (159)
...+|..+|++..+|..|
T Consensus 26 q~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 467899999999999998
No 348
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=21.12 E-value=47 Score=22.15 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+......|... . |- ......||+..|++...|-.+|.|+-.=..
T Consensus 14 l~aa~~l~~~~-G-~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (195)
T 3pas_A 14 LEATVREVADH-G-FS-ATSVGKIAKAAGLSPATLYIYYEDKEQLLL 57 (195)
T ss_dssp HHHHHHHHHHH-H-HH-HCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-C-hH-hcCHHHHHHHhCCCchHHHHHcCCHHHHHH
Confidence 34445556666 3 32 235778999999999999999999876433
No 349
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.85 E-value=42 Score=23.23 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhhHHHHHH
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqNRR~k~r 64 (159)
+.+....|... . |-. .....||...|++...|-..|.|+-.=..
T Consensus 14 l~aA~~lf~~~-G-y~~-~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~ 57 (206)
T 1vi0_A 14 IDAAVEVIAEN-G-YHQ-SQVSKIAKQAGVADGTIYLYFKNKEDILI 57 (206)
T ss_dssp HHHHHHHHHHH-C-GGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHh-C-ccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 56666778888 4 654 34678899999999999999999876433
No 350
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=20.32 E-value=45 Score=22.13 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHhCCCchhhhhhhh
Q psy10851 32 HKTTQVREALAKDTGLSVRVVQVWFQ 57 (159)
Q Consensus 32 yp~~~~r~~La~~l~l~~~~V~vWFq 57 (159)
.+++.+...|.+.+..+.+.|+.|++
T Consensus 7 ~lspe~l~~L~~~t~fs~~elk~~y~ 32 (118)
T 1tuz_A 7 LISPSDFAQLQKYMEYSTKKVSDVLK 32 (118)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cCCHHHHHHHHHHcccCHHHHHHHHH
Confidence 56788888888888999999999964
No 351
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.29 E-value=58 Score=21.14 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q psy10851 15 LNLKVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQN 58 (159)
Q Consensus 15 ~~Q~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWFqN 58 (159)
...+..+..+...+ +-.......||..+||+.+.+..-|+.
T Consensus 10 ~~~i~~~~~~i~~~---~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 10 AITIHSILDWIEDN---LESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHHHTT---TTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444444443 333356788999999999988777754
No 352
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.08 E-value=1.4e+02 Score=17.28 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy10851 13 RLLNLKVKLKTSFNSC----CPGHKTTQVREALAKDTG--LSVRVVQVWFQ 57 (159)
Q Consensus 13 ~s~~Q~~~Le~~F~~~----~~~yp~~~~r~~La~~l~--l~~~~V~vWFq 57 (159)
.+..+...|...|..- +. +.+..+...+...+| ++...|..+|.
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G-~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNG-YISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSS-EECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCC-eEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456677777777542 13 778888888877777 45566666653
No 353
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.08 E-value=1.2e+02 Score=17.08 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCchhhhhhh
Q psy10851 18 KVKLKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWF 56 (159)
Q Consensus 18 ~~~Le~~F~~~~~~yp~~~~r~~La~~l~l~~~~V~vWF 56 (159)
...+...+..+ . . .+...|..||++...+..|.
T Consensus 21 ~~~i~~aL~~~-~--g---n~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 21 KIFIEEKLREY-D--Y---DLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHT-T--T---CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHh-C--C---CHHHHHHHHCcCHHHHHHHH
Confidence 34455555555 2 1 35678999999987665544
Done!