RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10851
(159 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 50.2 bits (121), Expect = 2e-09
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+ + RE LAK GL+ R V+VWFQN+RAK K+
Sbjct: 26 SAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 47.2 bits (113), Expect = 3e-08
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64
L+ F + + + RE LAK GLS R V+VWFQN+RAK K
Sbjct: 16 LEKEFQKNP--YPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 47.2 bits (113), Expect = 4e-08
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
+ + RE LAK+ GL+ R V++WFQN+RAK+K+ +
Sbjct: 26 SREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 50.8 bits (121), Expect = 5e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 865 EEEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 50.4 bits (120), Expect = 6e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEE 888
Score = 50.0 bits (119), Expect = 1e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEEN 890
Score = 49.6 bits (118), Expect = 1e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEEEEEEEEEEEEE E
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 49.6 bits (118), Expect = 1e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 46.9 bits (111), Expect = 9e-07
Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEEEEEEEEEEEEEEEEEEEEE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEE 885
Score = 34.2 bits (78), Expect = 0.023
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ + EEEEEEEEEEEEEEE
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEE 878
Score = 33.0 bits (75), Expect = 0.060
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + + EEEEEEEEEEEEEE
Sbjct: 852 VDGGGGSDGGDSEEEEEEEEEEEEEE 877
Score = 32.3 bits (73), Expect = 0.11
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 69 KAKQQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYE 128
+A+Q+ ++ + +SE I E E E E +++ D K + ++ +E
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGE-------GEIEAKEADHKGETEAEEVEHE 718
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E+E E E EE EE E+E E E
Sbjct: 719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEA 749
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 43.1 bits (102), Expect = 2e-05
Identities = 21/25 (84%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEEEEE EEEEEEEEEEE
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEE 327
Score = 41.2 bits (97), Expect = 9e-05
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEEEEE EEEEEEEEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEE 325
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/24 (83%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEEEE EEEEEEEEEEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEER 328
Score = 40.8 bits (96), Expect = 1e-04
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEEEEE EEEEEEEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEE 324
Score = 40.0 bits (94), Expect = 2e-04
Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 4/29 (13%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEE----EEV 159
EEEEEEEEE EEEEEEEEEEE EEV
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEEV 334
Score = 26.5 bits (59), Expect = 7.0
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 134 QEEEEEEEEEEEEEEEE 150
+EEEEEEEEEE EEE
Sbjct: 317 EEEEEEEEEEERTFEEE 333
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 41.2 bits (96), Expect = 9e-05
Identities = 14/25 (56%), Positives = 25/25 (100%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
++E+E+E++++EE++EEEEEEEEE+
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 41.2 bits (96), Expect = 1e-04
Identities = 15/28 (53%), Positives = 26/28 (92%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F I +++E+E+E++++EE++EEEEEEEE
Sbjct: 151 FVIDDDDEDEDEDDDDEEDDEEEEEEEE 178
Score = 38.9 bits (90), Expect = 7e-04
Identities = 14/24 (58%), Positives = 23/24 (95%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
+E+E+E++++EE++EEEEEEEEE
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 30.4 bits (68), Expect = 0.38
Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 4/30 (13%)
Query: 133 IQEEEEEEEEEEEEEEEE----EEEEEEEE 158
+++EE++EEEEEEEEE ++E+EE+E
Sbjct: 162 EDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++EEEE+E+EEEEEEEEE EE E E
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 40.0 bits (94), Expect = 2e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+++EEEE+E+EEEEEEEEE EE
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEP 368
Score = 39.3 bits (92), Expect = 4e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
Q++EEEE+E+EEEEEEEEE EE E
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEP 370
Score = 38.5 bits (90), Expect = 6e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE+E+EEEEEEEEE EE E EE
Sbjct: 349 EEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 34.7 bits (80), Expect = 0.013
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E+EEEEEEEEE EE E EE
Sbjct: 352 EQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.9 bits (78), Expect = 0.023
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
++E+EEEEEEEEE EE E EE
Sbjct: 352 EQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.5 bits (77), Expect = 0.031
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
G + EEEEEEEEEEE E +E EE +
Sbjct: 282 RGLYQLEEEEEEEEEEEPAERDELEENPDF 311
Score = 30.4 bits (69), Expect = 0.43
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEE 153
E +EEEEEEEE EE E EE
Sbjct: 350 EEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 30.0 bits (68), Expect = 0.57
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++E EEEEEEEE E +EE+E EEEE
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEE 192
Score = 29.6 bits (67), Expect = 0.77
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEEE E +EE+E EEEEEE
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEEEE 194
Score = 29.3 bits (66), Expect = 0.92
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+++ E E E EEEEEEEE E +EE+E
Sbjct: 160 YYVAEVELREGEEEEEEEEVGEADEEDEG 188
Score = 28.9 bits (65), Expect = 1.2
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEE E +EE+E EEEEEEE EEV
Sbjct: 174 EEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEE E +EE+E EEEEEEE E
Sbjct: 171 EEEEEEEEVGEADEEDEGEEEEEEEPE 197
Score = 27.7 bits (62), Expect = 3.0
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEE E +EE+E EEEEEEE
Sbjct: 173 EEEEEEVGEADEEDEGEEEEEEEPE 197
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 39.5 bits (93), Expect = 3e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
Q EEEEEEEEEEEEEE EEE
Sbjct: 297 QAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 39.1 bits (92), Expect = 4e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEEEEEEEEEEEEE EEE
Sbjct: 296 AQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 39.1 bits (92), Expect = 4e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q + EEEEEEEEEEEEEE EE
Sbjct: 295 QAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 33.3 bits (77), Expect = 0.036
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + + EEEEEEEEEEEEEE
Sbjct: 292 LSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 31.4 bits (72), Expect = 0.14
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ + EEEEEEEEEEEEEE
Sbjct: 291 VLSAQAQAAAAEEEEEEEEEEEEEEP 316
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 37.3 bits (87), Expect = 4e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 37.2 bits (87), Expect = 6e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE++EEEEEEEE+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 36.5 bits (85), Expect = 0.001
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE++EEEEEEEE+EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEE 156
EE++EEEEEEEE+EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE++EEEEEEEE+EE EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 34.2 bits (79), Expect = 0.007
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE++EEEEEEEE+EE E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESE 94
Score = 29.9 bits (68), Expect = 0.20
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 138 EEEEEEEEEEEEEEEEEEEEEV 159
EE++EEEEEEEE+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEE 92
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQR 60
+ + LA+ TGLS + + WF N R
Sbjct: 14 EEKSELARQTGLSRKQIDNWFINAR 38
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 37.8 bits (88), Expect = 0.001
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 57 QNQRAKMKKIQRKAK--QQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVG 114
Q Q+ K + +Q A ++ +S D S+ +EP E+ RSS +
Sbjct: 69 QKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAY-- 126
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ + L YE +E+E E EE E E E+
Sbjct: 127 --RDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPEL 169
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/26 (53%), Positives = 23/26 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++EE+EEEE++EE+++E+E EEEE
Sbjct: 115 DDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/25 (48%), Positives = 23/25 (92%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +++EE+EEEE++EE+++E+E EE
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESEE 137
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
+ E +EE+EEEE++EE+++E+E EEEE
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.2 bits (79), Expect = 0.011
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
K S V G L ++E +++EE+EEEE++EE+++E+E
Sbjct: 93 KSGSGPVHISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDES 135
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 36.7 bits (85), Expect = 0.003
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEEEEEEEEE E E EE V
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPV 427
Score = 36.3 bits (84), Expect = 0.004
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEEEEEEEE E E EE
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 34.4 bits (79), Expect = 0.018
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEE 156
+EEEEEEEEEEEE E E EE
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEE 425
Score = 34.0 bits (78), Expect = 0.027
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
D + + E G + E EEEEEEEEEEEEE E E +
Sbjct: 379 DATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPM 423
Score = 33.6 bits (77), Expect = 0.036
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEEEEEEEEE E E EE
Sbjct: 404 EEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEEEEEE E E EE EV
Sbjct: 407 EEEEEEEEEAAEAEAPMEEPVPGFEV 432
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 35.9 bits (83), Expect = 0.003
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
R L+ + + VQ+WFQN+RAK KK + +Q
Sbjct: 81 RIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEEEEEEEEEEE E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMM 426
Score = 33.5 bits (77), Expect = 0.037
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEEEEEEEEEEE E
Sbjct: 405 EEEEEEEEEEEEEEEPVAEVMMMPA 429
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 33.0 bits (76), Expect = 0.014
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 135 EEEEEEEEEEEEEEEEEEEEE 155
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.014
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 136 EEEEEEEEEEEEEEEEEEEEE 156
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.014
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 137 EEEEEEEEEEEEEEEEEEEEE 157
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.014
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 138 EEEEEEEEEEEEEEEEEEEEE 158
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 31.8 bits (73), Expect = 0.029
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 139 EEEEEEEEEEEEEEEEEEEEV 159
EEE++EEEEEEEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 34.7 bits (80), Expect = 0.015
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
E ++EEEE+EEEEEEE+E+E
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEGPS 409
Score = 34.7 bits (80), Expect = 0.016
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I++ E ++EEEE+EEEEEEE+E+E
Sbjct: 381 IEDANTERDDEEEEDEEEEEEEDEDE 406
Score = 34.7 bits (80), Expect = 0.016
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 119 SSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ S L+I EEEE+EEEEEEE+E+E +E +
Sbjct: 375 AFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSD 414
Score = 32.8 bits (75), Expect = 0.070
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 127 YELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
Y L F E E+ E ++EEEE+EEEEEEE
Sbjct: 371 YILDAFSALEIEDANTERDDEEEEDEEEEEEE 402
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 33.2 bits (76), Expect = 0.016
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+ EE+EEE+++EEE+EEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.37
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ EE+EEE+++EEE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEE 94
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 33.1 bits (76), Expect = 0.016
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E E +E EEEE+EEE EEE ++
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDD 101
Score = 33.1 bits (76), Expect = 0.018
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E E +E EEEE+EEE EEE
Sbjct: 75 AGAEAAAEADEAEEEEKEEEAEEES 99
Score = 32.0 bits (73), Expect = 0.041
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E +E EEEE+EEE EEE +++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.2 bits (71), Expect = 0.081
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEE 155
E +E EEEE+EEE EEE +++
Sbjct: 81 AEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 0.19
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +E EEEE+EEE EE
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEE 97
Score = 28.1 bits (63), Expect = 1.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E E +E EEEE+EEE E
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAE 96
Score = 27.4 bits (61), Expect = 1.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E E +E EEEE+EEE
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEE 94
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 34.0 bits (78), Expect = 0.020
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E E+ +EE+E++EEEEEEEEEE+E
Sbjct: 163 LEAEDVDEEDEKDEEEEEEEEEEDE 187
Score = 34.0 bits (78), Expect = 0.021
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E+ +EE+E++EEEEEEEEEE+E+
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDF 189
Score = 33.2 bits (76), Expect = 0.039
Identities = 14/26 (53%), Positives = 24/26 (92%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EE+E++EEEEEEEEEE+E+ ++++
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 32.4 bits (74), Expect = 0.056
Identities = 12/25 (48%), Positives = 23/25 (92%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+E++EEEEEEEEEE+E+ ++++++
Sbjct: 172 DEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 32.4 bits (74), Expect = 0.058
Identities = 13/24 (54%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E++EEEEEEEEEE+E+ +++++
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 32.4 bits (74), Expect = 0.062
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++E E E+ +EE+E++EEEEEEEEEE
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 32.4 bits (74), Expect = 0.069
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E E+ +EE+E++EEEEEEEEEE+
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 32.0 bits (73), Expect = 0.075
Identities = 11/23 (47%), Positives = 21/23 (91%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEE 156
EEEEEEEEEE+E+ ++++++++
Sbjct: 175 DEEEEEEEEEEDEDFDDDDDDDD 197
Score = 32.0 bits (73), Expect = 0.078
Identities = 11/24 (45%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
++EEEEEEEEEE+E+ ++++++++
Sbjct: 174 KDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 31.6 bits (72), Expect = 0.11
Identities = 14/24 (58%), Positives = 22/24 (91%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ +EE+E++EEEEEEEEEE+E+ +
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 31.3 bits (71), Expect = 0.17
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
E E E+ +EE+E++EEEEEEEEE
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 29.3 bits (66), Expect = 0.72
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +E E E+ +EE+E++EEEEEEEE
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEE 183
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++ +E E E+ +EE+E++EEEEEEE
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEE 182
Score = 27.8 bits (62), Expect = 2.6
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++ +E E E+ +EE+E++EEEEE
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEE 180
Score = 26.6 bits (59), Expect = 5.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 113 VGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
K K L E + E++ +E E E+ +EE+E++E
Sbjct: 131 ALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Score = 26.3 bits (58), Expect = 6.6
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++ +E E E+ +EE+E++EEEE
Sbjct: 156 LEKKLKELEAEDVDEEDEKDEEEE 179
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 34.1 bits (78), Expect = 0.021
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEEEE+E EEEE E+EEEEEEV
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 33.3 bits (76), Expect = 0.046
Identities = 33/87 (37%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 78 SLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSS-----SVLKIGYELGFF 132
L++ S+ +KQ+ E E R S D K+S S E
Sbjct: 383 RLEEVISKYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEE 442
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEEEEEEEEEEE+E EEEE E
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGED 469
Score = 33.0 bits (75), Expect = 0.053
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEEEEE+E EEEE E+EEEE
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEE 473
Score = 33.0 bits (75), Expect = 0.061
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEE+E EEEE E+EEEEEE
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 33.0 bits (75), Expect = 0.064
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEE+E EEEE E+EEEEE
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEE 474
Score = 33.0 bits (75), Expect = 0.065
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEEEEEE+E EEEE E+EEE
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEE 472
Score = 32.2 bits (73), Expect = 0.12
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEE+E EEEE E+EEEEEE E
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 30.7 bits (69), Expect = 0.34
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ EEEE E+EEEEEE E + EEE+
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 29.5 bits (66), Expect = 0.84
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE E+EEEEEE E + EEE E
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEEEME 487
Score = 29.1 bits (65), Expect = 1.0
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++E EEEE E+EEEEEE E + E
Sbjct: 459 EQESEEEEGEDEEEEEEVEADNGSE 483
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 33.9 bits (79), Expect = 0.024
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L + +++ E++ E EE EEEE E EE
Sbjct: 322 LAYRLRKREKKAAELAAEEAEEEEAAEPEE 351
Score = 30.9 bits (71), Expect = 0.29
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
+ Y L ++ E EE EEEE E EEE
Sbjct: 322 LAYRLRKREKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 33.6 bits (78), Expect = 0.026
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEE EEEEEEEEEEE EE E E
Sbjct: 234 EEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.037
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEE EEEEEEEEEEE EE E
Sbjct: 231 EAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 32.8 bits (76), Expect = 0.046
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEE EEEEEEEEEEE EE
Sbjct: 230 AEAAEEEEEEAEEEEEEEEEEEAEE 254
Score = 32.4 bits (75), Expect = 0.061
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEE EEEEEEEEEEE E
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 32.1 bits (74), Expect = 0.076
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
Q E EEEEEE EEEEEEEEEE
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEE 250
Score = 31.7 bits (73), Expect = 0.10
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E EEEEEE EEEEEEEEEEE
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 31.3 bits (72), Expect = 0.14
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEEE EEEEEEEEEEE
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEE 251
Score = 30.1 bits (69), Expect = 0.33
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEE 155
E +EE EEEEEEEEEEE EE E E
Sbjct: 231 EAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 28.6 bits (65), Expect = 1.3
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
+ E EEEEEE EEEEEEEE
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEE 249
Score = 26.3 bits (59), Expect = 6.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I E + E EEEEEE EEEEEE
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEE 247
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 33.8 bits (77), Expect = 0.028
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
+ E EE+EEEEEEEEEEEE +V
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDV 246
Score = 33.0 bits (75), Expect = 0.051
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 135 EEEEEEEEEEEEEEEEEEEEE 155
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 33.6 bits (77), Expect = 0.029
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+E+EEEE+ +E EEEE E+ EE
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEE 395
Score = 32.4 bits (74), Expect = 0.082
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I EE +E+E+EEEE+ +E EEEE
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEG 390
Score = 32.4 bits (74), Expect = 0.091
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F + +E+E+EEEE+ +E EEEE E+
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDS 393
Score = 32.0 bits (73), Expect = 0.10
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+E+EEEE+ +E EEEE E+ EEE
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEE 396
Score = 32.0 bits (73), Expect = 0.10
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+EEEE+ +E EEEE E+ EEE
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEG 397
Score = 31.2 bits (71), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++EEEE+ +E EEEE E+ EEE
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 29.7 bits (67), Expect = 0.57
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEE+ +E EEEE E+ EEE +
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEE+ +E EEEE E+ EEE +
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQS 400
Score = 28.2 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+E+ +E EEEE E+ EEE + E
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSRE 402
Score = 27.4 bits (61), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ + EE +E+E+EEEE+ +E E
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHE 386
Score = 27.4 bits (61), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q +E EEEE E+ EEE + E+
Sbjct: 380 QRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 26.2 bits (58), Expect = 9.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +E EEEE E+ EEE + E+
Sbjct: 381 RSDEHEEEEGEDSEEEGSQSREDGS 405
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 31.4 bits (72), Expect = 0.037
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEE E+ E E+EE+EEE+++++
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDD 72
Score = 30.7 bits (70), Expect = 0.077
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEE E+ E E+EE+EEE+++++
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 29.5 bits (67), Expect = 0.22
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E EEEEE E+ E E+EE+EEE+
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEED 68
Score = 29.5 bits (67), Expect = 0.22
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEE E+ E E+EE+EEE+++
Sbjct: 47 EWEEEEEGEDLESEDEEDEEEDDD 70
Score = 29.1 bits (66), Expect = 0.25
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E EEEEE E+ E E+EE+EEE++
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDD 69
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 32.3 bits (74), Expect = 0.069
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEE++ E E+E+EE+E+EEE
Sbjct: 286 AEEEEEEDDYSESEDEDEEDEDEEE 310
Score = 31.6 bits (72), Expect = 0.16
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEEE++ E E+E+EE+E+EEEE
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 31.2 bits (71), Expect = 0.17
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE++ E E+E+EE+E+EEEEE+
Sbjct: 289 EEEEDDYSESEDEDEEDEDEEEEED 313
Score = 31.2 bits (71), Expect = 0.17
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+++ EEEEEE++ E E+E+EE+E+E
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEE 309
Score = 31.2 bits (71), Expect = 0.20
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEE++ E E+E+EE+E+EEEEE
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 30.8 bits (70), Expect = 0.25
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E++ E E+E+EE+E+EEEEE+++
Sbjct: 291 EEDDYSESEDEDEEDEDEEEEEDDD 315
Score = 30.0 bits (68), Expect = 0.45
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
++ E E+E+EE+E+EEEEE+++E
Sbjct: 293 DDYSESEDEDEEDEDEEEEEDDDE 316
Score = 30.0 bits (68), Expect = 0.48
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E E+E+EE+E+EEEEE+++E
Sbjct: 294 DYSESEDEDEEDEDEEEEEDDDEG 317
Score = 29.6 bits (67), Expect = 0.68
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E+E+EE+E+EEEEE+++E ++
Sbjct: 296 SESEDEDEEDEDEEEEEDDDEGDK 319
Score = 29.2 bits (66), Expect = 0.79
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E+E+EE+E+EEEEE+++E +
Sbjct: 295 YSESEDEDEEDEDEEEEEDDDEGD 318
Score = 26.9 bits (60), Expect = 4.6
Identities = 10/21 (47%), Positives = 20/21 (95%)
Query: 134 QEEEEEEEEEEEEEEEEEEEE 154
++E+EE+E+EEEEE+++E ++
Sbjct: 299 EDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 31.4 bits (72), Expect = 0.12
Identities = 10/24 (41%), Positives = 22/24 (91%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E +EE+ E++++++E+E+E++EEE
Sbjct: 47 ELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 31.4 bits (72), Expect = 0.12
Identities = 10/26 (38%), Positives = 23/26 (88%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I+ E +EE+ E++++++E+E+E++EE
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEE 69
Score = 31.0 bits (71), Expect = 0.18
Identities = 9/24 (37%), Positives = 22/24 (91%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+ E++++++E+E+E++EEE +
Sbjct: 49 DEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 31.0 bits (71), Expect = 0.20
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E+E+E+
Sbjct: 43 AIESELDEEDLEDDDDDDEDEDED 66
Score = 30.6 bits (70), Expect = 0.22
Identities = 9/24 (37%), Positives = 21/24 (87%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+ E++++++E+E+E++EEE
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 29.8 bits (68), Expect = 0.46
Identities = 8/25 (32%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E+ E++++++E+E+E++EEE +
Sbjct: 50 EEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 29.8 bits (68), Expect = 0.51
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E+E+E
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDE 65
Score = 28.7 bits (65), Expect = 1.1
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E+E+
Sbjct: 41 AAAIESELDEEDLEDDDDDDEDED 64
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E++++++E+E+E++EEE +
Sbjct: 52 DLEDDDDDDEDEDEDDEEEADLGP 75
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E+E
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDE 63
Score = 27.9 bits (63), Expect = 2.2
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
E++++++E+E+E++EEE +
Sbjct: 52 DLEDDDDDDEDEDEDDEEEADLGP 75
Score = 27.5 bits (62), Expect = 2.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+++++E+E+E++EEE + + EE
Sbjct: 56 DDDDDEDEDEDDEEEADLGPDPEEA 80
Score = 27.5 bits (62), Expect = 2.8
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E+
Sbjct: 39 ATAAAIESELDEEDLEDDDDDDED 62
Score = 27.2 bits (61), Expect = 3.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++E
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDE 61
Score = 26.4 bits (59), Expect = 5.7
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E++++++
Sbjct: 37 AAATAAAIESELDEEDLEDDDDDD 60
Score = 26.4 bits (59), Expect = 5.9
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
++++++E+E+E++EEE + + E
Sbjct: 55 DDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 26.0 bits (58), Expect = 10.0
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
E E +EE+ E+++++
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDD 59
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 31.9 bits (73), Expect = 0.13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q EEE E++++ E+EE
Sbjct: 263 QPPEEEPPPPPPPPEDDDDPPEDEE 287
Score = 31.5 bits (72), Expect = 0.17
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE E++++ E+EEE++
Sbjct: 266 EEEPPPPPPPPEDDDDPPEDEEEQD 290
Score = 31.1 bits (71), Expect = 0.21
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEE E++++ E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPE 284
Score = 31.1 bits (71), Expect = 0.22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEE E++++ E+EEE
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEE 288
Score = 31.1 bits (71), Expect = 0.24
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEE E++++ E+EEE+
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEEQ 289
Score = 30.8 bits (70), Expect = 0.32
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + EEE E++++
Sbjct: 258 LPAPPQPPEEEPPPPPPPPEDDDDPP 283
Score = 30.0 bits (68), Expect = 0.48
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEE E++++ E+E
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPEDE 286
Score = 30.0 bits (68), Expect = 0.52
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEE E++++ E+
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPED 285
Score = 30.0 bits (68), Expect = 0.59
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E E++++ E+EEE+++
Sbjct: 267 EEPPPPPPPPEDDDDPPEDEEEQDD 291
Score = 29.2 bits (66), Expect = 0.83
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
E++++ E+EEE+++ E+ EE+
Sbjct: 275 PPEDDDDPPEDEEEQDDAEDRALEEI 300
Score = 28.8 bits (65), Expect = 1.4
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++++ E+EEE+++ E+
Sbjct: 272 PPPPPEDDDDPPEDEEEQDDAEDR 295
Score = 28.1 bits (63), Expect = 2.0
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++++ E+EEE+++ E
Sbjct: 270 PPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 28.1 bits (63), Expect = 2.6
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E++++ E+EEE+++ E+
Sbjct: 270 PPPPPPPEDDDDPPEDEEEQDDAED 294
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 31.7 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+++EE++EE+ EE + EE +EE EE
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEE 306
Score = 31.7 bits (72), Expect = 0.16
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE++EE+ EE + EE +EE EEEE
Sbjct: 283 KEEKDEEKSEEVKTEEVDEEFEEEE 307
Score = 31.0 bits (70), Expect = 0.26
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E++EE+ EE + EE +EE EEEE+
Sbjct: 284 EEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 30.2 bits (68), Expect = 0.50
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+++EE+ EE + EE +EE EEEE+
Sbjct: 285 EKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 29.8 bits (67), Expect = 0.63
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++EE+ EE + EE +EE EEEE+
Sbjct: 286 KDEEKSEEVKTEEVDEEFEEEEKGF 310
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 30.5 bits (68), Expect = 0.15
Identities = 10/25 (40%), Positives = 25/25 (100%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEE++++E+EE+++E+++E+++EV
Sbjct: 17 DEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 28.2 bits (62), Expect = 0.80
Identities = 9/24 (37%), Positives = 23/24 (95%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
EEE++++E+EE+++E+++E+++E
Sbjct: 17 DEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 27.8 bits (61), Expect = 1.3
Identities = 8/25 (32%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +EEE++++E+EE+++E+++E+
Sbjct: 13 DSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 27.4 bits (60), Expect = 1.4
Identities = 8/24 (33%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ +EEE++++E+EE+++E+++E++
Sbjct: 15 DSDEEEDDDDEDEEDDDEDDDEDD 38
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/26 (34%), Positives = 24/26 (92%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EE++++E+EE+++E+++E+++E V
Sbjct: 18 EEEDDDDEDEEDDDEDDDEDDDEVPV 43
Score = 27.0 bits (59), Expect = 2.1
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L F EE+ + + +EEE++++E+EE+++E
Sbjct: 3 LHFLEGEEDSDSDSDEEEDDDDEDEEDDDE 32
Score = 26.3 bits (57), Expect = 3.7
Identities = 8/25 (32%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E+ + + +EEE++++E+EE+++E+
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDED 33
Score = 25.9 bits (56), Expect = 6.6
Identities = 7/25 (28%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++ + + +EEE++++E+EE+++E++
Sbjct: 10 EDSDSDSDEEEDDDDEDEEDDDEDD 34
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 31.8 bits (73), Expect = 0.15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++EEE E + +EE EEEEE +
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEESI 338
Score = 31.8 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
QEEE E + +EE EEEEE
Sbjct: 315 QEEEAAAEAAKAQEEAAEEEEESIN 339
Score = 30.3 bits (69), Expect = 0.42
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++EEE E + +EE EEEEE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEE 336
Score = 30.3 bits (69), Expect = 0.46
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L ++++ ++EEE E + +EE EEE
Sbjct: 305 LAWYLRRRSKQEEEAAAEAAKAQEEAAEEE 334
Score = 29.9 bits (68), Expect = 0.56
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EE E + +EE EEEEE ++
Sbjct: 317 EEAAAEAAKAQEEAAEEEEESINDI 341
Score = 29.5 bits (67), Expect = 0.70
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ ++EEE E + +EE EEEE
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEE 336
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 31.0 bits (71), Expect = 0.15
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 120 SSVLKI-----GYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+++L G+ L F +E +EEEEEE+++ ++ E+E+ E
Sbjct: 94 AAILAFYDPENGFGLQFEPEEADEEEEEEDDDADDSPEDEDPEP 137
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 31.0 bits (70), Expect = 0.15
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEE E+ E+ +EE+EE EE EEE
Sbjct: 35 EEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 26.8 bits (59), Expect = 4.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 111 SPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEE-----EEEEEEEEEV 159
P G+ KK + + EE EE+EEE E+ +EE+EE EEV
Sbjct: 2 PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEV 55
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 31.7 bits (73), Expect = 0.16
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E EE +++E+EEEEE
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEE 202
Score = 31.3 bits (72), Expect = 0.17
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F+ EE+ E EE +++E+EE
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEE 199
Score = 30.9 bits (71), Expect = 0.23
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++ E EE +++E+EEEEE+E
Sbjct: 180 EDPAHVGSELEELDDDEDEEEEEDEN 205
Score = 30.5 bits (70), Expect = 0.30
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E EE +++E+EEEE
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEE 201
Score = 30.5 bits (70), Expect = 0.36
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E EE +++E+EEE
Sbjct: 177 NAEEDPAHVGSELEELDDDEDEEE 200
Score = 29.4 bits (67), Expect = 0.83
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E EE +++E+EEEEE+E +
Sbjct: 183 AHVGSELEELDDDEDEEEEEDEND 206
Score = 27.8 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E EE +++E+EEEEE+E ++
Sbjct: 185 VGSELEELDDDEDEEEEEDENDDS 208
Score = 27.5 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
E E EE +++E+EEEEE+E ++
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEEDENDDSL 209
Score = 27.1 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E EE +++E+EEEEE+E ++
Sbjct: 187 SELEELDDDEDEEEEEDENDDSLA 210
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 0.16
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
I Y + ++++E E+E +EEEEEE+EE++EEEE
Sbjct: 19 INYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEE 52
Score = 30.9 bits (70), Expect = 0.29
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E++EEEE+ ++EEE +EEEE+EE
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 30.1 bits (68), Expect = 0.41
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ +EEEEEE+EE++EEEE+ ++EEEV
Sbjct: 35 VPDEEEEEEKEEKKEEEEKTTDKEEEV 61
Score = 29.7 bits (67), Expect = 0.56
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+EE++EEEE+ ++EEE +EEEE
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEE 66
Score = 29.7 bits (67), Expect = 0.65
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++EE++EEEE+ ++EEE +EEEE+
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEK 67
Score = 29.7 bits (67), Expect = 0.68
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEEE+EE++EEEE+ ++EEE +
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDE 63
Score = 29.4 bits (66), Expect = 0.87
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE+EE++EEEE+ ++EEE +EE
Sbjct: 40 EEEEKEEKKEEEEKTTDKEEEVDEE 64
Score = 29.4 bits (66), Expect = 0.89
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+EE++EEEE+ ++EEE +EEE
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEE 65
Score = 28.6 bits (64), Expect = 1.5
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
LG I E+EE EEE+EE E E E EE+
Sbjct: 491 LGLSIDEDEEVEEEDEEAEVETTEPAEEDA 520
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.5 bits (72), Expect = 0.16
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 139 EEEEEEEEEEEEEEEEEEEEV 159
EEEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.22
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 135 EEEEEEEEEEEEEEEEEEEEE 155
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.22
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 136 EEEEEEEEEEEEEEEEEEEEE 156
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.22
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 137 EEEEEEEEEEEEEEEEEEEEE 157
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.22
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 138 EEEEEEEEEEEEEEEEEEEEE 158
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.62
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 134 QEEEEEEEEEEEEEEEEEEE 153
EEEEEEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 31.2 bits (70), Expect = 0.16
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++E +E+EEEEEEEEEEE E EE E
Sbjct: 132 EDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.4 bits (68), Expect = 0.29
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 130 GFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
G ++ +E+E +E+EEEEEEEEEEE EV
Sbjct: 123 GNAGKKATKEDESDEDEEEEEEEEEEEAEV 152
Score = 30.4 bits (68), Expect = 0.31
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E+E +E+EEEEEEEEEEE E EE
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEEN 155
Score = 30.4 bits (68), Expect = 0.34
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
E +E+EEEEEEEEEEE E EE E+
Sbjct: 133 DESDEDEEEEEEEEEEEAEVEENEQG 158
Score = 29.3 bits (65), Expect = 0.80
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
+E+EEEEEEEEEEE E EE E+
Sbjct: 136 DEDEEEEEEEEEEEAEVEENEQGT 159
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.5 bits (72), Expect = 0.16
Identities = 14/25 (56%), Positives = 23/25 (92%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEE+EE+E+ ++E++EEEEEEE+
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 31.5 bits (72), Expect = 0.16
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE+EE+E+ ++E++EEEEEEE
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEE 375
Score = 31.1 bits (71), Expect = 0.24
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ +EEE+EE+E+ ++E++EEEEE
Sbjct: 350 DLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 31.1 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEE+EE+E+ ++E++EEEEEE
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEE 375
Score = 30.7 bits (70), Expect = 0.28
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
E G ++EE+++++ EEEEE+ + +EEE+
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 30.7 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+EE+E+ ++E++EEEEEEE+E+
Sbjct: 355 EEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 30.4 bits (69), Expect = 0.42
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ +EEE+EE+E+ ++E++EEEE
Sbjct: 349 VDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 30.0 bits (68), Expect = 0.53
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ + +EEE+EE+E+ ++E++EEE
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEEE 371
Score = 30.0 bits (68), Expect = 0.62
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ + +EEE+EE+E+ ++E++EE
Sbjct: 347 EDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 30.0 bits (68), Expect = 0.63
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ LG ++EEEEE+ ++E+EE+++++ EEE
Sbjct: 310 DDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEE 345
Score = 29.6 bits (67), Expect = 0.67
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+ + +EEE+EE+E+ ++E++E
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 29.6 bits (67), Expect = 0.72
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+++ EEEEE+ + +EEE+EE+E+
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 29.6 bits (67), Expect = 0.73
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++EEEE+ + +EEE+EE+E+ ++E+
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDED 367
Score = 29.6 bits (67), Expect = 0.81
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEE+ ++E+EE+++++ EEEE
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEE 346
Score = 29.2 bits (66), Expect = 0.90
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q EE+EEEEE+ ++E+EE+++++
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 29.2 bits (66), Expect = 1.0
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEE+ + +EEE+EE+E+ ++E++
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDD 368
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEE+ ++E+EE+++++ EEEEE+V
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDV 349
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEE+ ++E+EE+++++ EEEEE
Sbjct: 323 EEEEEDGVDDEDEEDDDDDLEEEEE 347
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+++++ EEEEE+ + +EEE+E
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEE 359
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 130 GFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
++ EEEEE+ + +EEE+EE+E+
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 27.7 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEEEE+ + +EEE+EE+E+ +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSD 364
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 31.5 bits (72), Expect = 0.18
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ Y L +++ EE+E+ EE ++EEEEEEEE V
Sbjct: 319 LAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESV 353
Score = 30.7 bits (70), Expect = 0.29
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 120 SSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +L L +E++ EE+E+ EE ++EEEEEEEE
Sbjct: 313 AGLLAFLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEE 351
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+E+ EE ++EEEEEEEE ++V
Sbjct: 331 AEEKEKPAEEAKKEEEEEEEESVDDV 356
Score = 27.6 bits (62), Expect = 3.0
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q EE+E+ EE ++EEEEEEEE +
Sbjct: 330 QAEEKEKPAEEAKKEEEEEEEESVD 354
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.3 bits (71), Expect = 0.21
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 108 SVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
S+ + +SSS L Q+EE+EE+ EE +E+EEE+ E+E
Sbjct: 28 SITLQIDSSFRSSSNPMPPIPLQLLEQKEEKEEDAGEEGDEDEEEQGEDEHF 79
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 31.1 bits (70), Expect = 0.22
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
F I EE EE +E++EEEE EEEEE + V
Sbjct: 325 FAIDEEMLEETQEQQEEEENEEEEENDTV 353
Score = 27.2 bits (60), Expect = 4.2
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEE 151
K++S L + + + EE +E++EEEE EEEEE
Sbjct: 314 KQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.0 bits (70), Expect = 0.24
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E +EEE EEEEE + EE E E
Sbjct: 399 VVREVDEEEIEEEEEAMQPEEMEMEGF 425
Score = 29.8 bits (67), Expect = 0.57
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ +EEE EEEEE + EE E E EV
Sbjct: 402 EVDEEEIEEEEEAMQPEEMEMEGFEV 427
Score = 29.4 bits (66), Expect = 0.69
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
D K + + K E G + + E +EEE EEEEE + EE
Sbjct: 377 DAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEM 420
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 31.0 bits (70), Expect = 0.24
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
++++ Y + I E E ++E ++E EEE + E E+
Sbjct: 359 IVRVAYRV---IWEGELKDERSDDESEEESDLESSED 392
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 30.6 bits (69), Expect = 0.27
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+E +E+EEEEE EEEEEEE+E+
Sbjct: 259 YVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 26.3 bits (58), Expect = 7.6
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 80 DKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEE 139
+ ED S S D S++ + ++ + G ++ ++ +
Sbjct: 189 EPEDDPKDSLGNGSSTNGLPDSSQDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSD 248
Query: 140 EEEEEE------------EEEEEEEEEEEEEV 159
+EE+++ E+EEEEE EEEEE
Sbjct: 249 DEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 30.5 bits (69), Expect = 0.28
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+EE+E EE+E E EEEE+EE
Sbjct: 45 VDEDEEDEAVVEEDENELTEEEEDEE 70
Score = 30.1 bits (68), Expect = 0.41
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
EE+E EE+E E EEEE+EE EV
Sbjct: 47 EDEEDEAVVEEDENELTEEEEDEEGEV 73
Score = 29.4 bits (66), Expect = 0.66
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E+EE+E EE+E E EEEE+
Sbjct: 44 VVDEDEEDEAVVEEDENELTEEEED 68
Score = 29.4 bits (66), Expect = 0.74
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E+EE E++ +E+EE+E EE+E
Sbjct: 34 LTEDEEAEDDVVDEDEEDEAVVEEDEN 60
Score = 29.0 bits (65), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 120 SSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ +L G G F ++ E+EE E++ +E+EE+E V
Sbjct: 16 AVLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVV 55
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 127 YELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
EE E++ +E+EE+E EE+E E
Sbjct: 30 SAQDLTEDEEAEDDVVDEDEEDEAVVEEDENE 61
Score = 26.7 bits (59), Expect = 6.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+E E++ +E+EE+E EE+E E
Sbjct: 38 EEAEDDVVDEDEEDEAVVEEDENELT 63
Score = 26.7 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
Q+ E+EE E++ +E+EE+E E
Sbjct: 27 PFASAQDLTEDEEAEDDVVDEDEEDEAVVE 56
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 30.6 bits (69), Expect = 0.30
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
EEEE EE EE+EEEE EEE EE
Sbjct: 78 DGEEEEVEEGEEDEEEEGEEESEE 101
Score = 30.2 bits (68), Expect = 0.44
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I E+ EEEE EE EE+EEEE EEE E
Sbjct: 75 ISEDGEEEEVEEGEEDEEEEGEEESE 100
Score = 30.2 bits (68), Expect = 0.45
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEE 158
EEEE EE EE+EEEE EEE EE
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEE 101
Score = 29.8 bits (67), Expect = 0.62
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEE EE EE+EEEE EEE EE E
Sbjct: 80 EEEEVEEGEEDEEEEGEEESEEFE 103
Score = 29.4 bits (66), Expect = 0.68
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEE EE EE+EEEE EEE EE E +
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPL 105
Score = 28.6 bits (64), Expect = 1.3
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E+ EEEE EE EE+EEEE EEE
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGEEESE 100
Score = 28.6 bits (64), Expect = 1.5
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++ E+ EEEE EE EE+EEEE EEE
Sbjct: 73 VRISEDGEEEEVEEGEEDEEEEGEEE 98
Score = 26.7 bits (59), Expect = 5.1
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I+ E+ EEEE EE EE+EEEE E
Sbjct: 71 IEVRISEDGEEEEVEEGEEDEEEEGE 96
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 30.7 bits (70), Expect = 0.33
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 109 VQSPV-----------GDKKKSSSVLKI----GYELGFFIQEEEEEEEEEEEEEEEEEEE 153
VQ+PV K V+K+ G EL E+EE E+ E E+ E
Sbjct: 814 VQTPVLGWIVERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVE 873
Query: 154 EEEEEV 159
E+EEE+
Sbjct: 874 EKEEEL 879
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 30.5 bits (69), Expect = 0.33
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE + E EE E E+ E EE+
Sbjct: 393 EEEEALQREAEERLEAEQAERAEED 417
Score = 30.5 bits (69), Expect = 0.38
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEE + E EE E E+ E EE
Sbjct: 392 REEEEALQREAEERLEAEQAERAEE 416
Score = 29.8 bits (67), Expect = 0.67
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE + E EE E E+ E EE+
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDA 418
Score = 29.4 bits (66), Expect = 0.72
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q EEEE + E EE E E+ E E
Sbjct: 391 QREEEEALQREAEERLEAEQAERAE 415
Score = 29.4 bits (66), Expect = 0.94
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+Q E EE E E+ E EE+ E
Sbjct: 398 LQREAEERLEAEQAERAEEDARLREL 423
Score = 29.0 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I + EEEE + E EE E E+ E
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERA 414
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E + E EE E E+ E EE+
Sbjct: 395 EEALQREAEERLEAEQAERAEEDAR 419
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E EE E E+ E EE+ E
Sbjct: 400 REAEERLEAEQAERAEEDARLRELY 424
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q E EE+ E E+E E+E
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDED 435
Score = 27.4 bits (61), Expect = 3.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + E EE E E+ E EE+
Sbjct: 396 EALQREAEERLEAEQAERAEEDARL 420
Score = 27.1 bits (60), Expect = 4.2
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E E+ E EE+ E E
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPE 428
Score = 27.1 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E E+E+E EE + EEEEE
Sbjct: 424 YPLPEDEFEDEDELEEAQPEEEEE 447
Score = 27.1 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
++E E+E E+E+E EE + EEE
Sbjct: 419 RLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 27.1 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E E+E+E EE + EEEEE
Sbjct: 425 PLPEDEFEDEDELEEAQPEEEEEA 448
Score = 27.1 bits (60), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E+E E+E+E EE + EEEE
Sbjct: 422 ELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 26.7 bits (59), Expect = 6.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E E+ E EE+ E E+E
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEF 431
Score = 26.7 bits (59), Expect = 7.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE E E+ E EE+ E
Sbjct: 402 AEERLEAEQAERAEEDARLRELYP 425
Score = 26.7 bits (59), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E E+E+E EE + EEEEE
Sbjct: 426 LPEDEFEDEDELEEAQPEEEEEAR 449
Score = 26.7 bits (59), Expect = 7.2
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE E E+ E EE+ E
Sbjct: 402 AEERLEAEQAERAEEDARLRELYPL 426
Score = 26.7 bits (59), Expect = 7.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E E E+ E EE+ E
Sbjct: 403 EERLEAEQAERAEEDARLRELYPLP 427
Score = 26.3 bits (58), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E + EEEE + E EE E E+
Sbjct: 385 VAELISQREEEEALQREAEERLEAEQ 410
Score = 26.3 bits (58), Expect = 8.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E E+E E+E+E
Sbjct: 414 AEEDARLRELYPLPEDEFEDEDEL 437
Score = 26.3 bits (58), Expect = 8.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EE+ E E+E E+E+E
Sbjct: 411 AERAEEDARLRELYPLPEDEFEDEDE 436
Score = 26.3 bits (58), Expect = 9.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E E+E E+E+E E
Sbjct: 415 EEDARLRELYPLPEDEFEDEDELE 438
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.5 bits (69), Expect = 0.33
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+E EE+E EEEE+ EEE+ EEE+
Sbjct: 156 KERAEEKEREEEEKAAEEEKAREEEI 181
Score = 29.3 bits (66), Expect = 0.81
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I++E EE+E EEEE+ EEE+ EE
Sbjct: 154 IKKERAEEKEREEEEKAAEEEKAREE 179
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 28.1 bits (63), Expect = 0.34
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEE+ E+EEE E+EEE EE+ E +
Sbjct: 18 LSLCEEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.3 bits (61), Expect = 0.76
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEEV 159
EEE+ E+EEE E+EEE EE+ EV
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 0.34
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 94 SEGESEWVSLDWRSS--VQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEE 151
+E E E+++ +++ ++ V +K K + F +++EEEEEEE+E++EEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 152 EEEEEEEV 159
+EEEEEE
Sbjct: 455 KEEEEEEA 462
Score = 30.3 bits (69), Expect = 0.37
Identities = 19/24 (79%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEEE+E++EEE+EEEEEE EE
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 30.3 bits (69), Expect = 0.38
Identities = 19/24 (79%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEEE+E++EEE+EEEEEE EEE
Sbjct: 442 EEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 30.3 bits (69), Expect = 0.47
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+EEEEEEE+E++EEE+EEEEEE E
Sbjct: 440 KEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 29.9 bits (68), Expect = 0.52
Identities = 18/25 (72%), Positives = 24/25 (96%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE+E++EEE+EEEEEE EEE+EE
Sbjct: 444 EEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 29.9 bits (68), Expect = 0.55
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEEEE+E++EEE+EEEEEE EEE+
Sbjct: 443 EEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 29.5 bits (67), Expect = 0.65
Identities = 18/25 (72%), Positives = 24/25 (96%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+E++EEE+EEEEEE EEE+EEE
Sbjct: 445 EEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 29.5 bits (67), Expect = 0.79
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+E++EEE+EEEEEE EEE+EEEE
Sbjct: 447 EKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 29.1 bits (66), Expect = 0.98
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+E++EEE+EEEEEE EEE+EEEEE
Sbjct: 448 KEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 28.7 bits (65), Expect = 1.2
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++EEE+EEEEEE EEE+EEEEE+
Sbjct: 449 EKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 28.3 bits (64), Expect = 1.8
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
++EEE+EEEEEE EEE+EEEEE++
Sbjct: 450 KKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 27.6 bits (62), Expect = 3.7
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
++EEE+EEEEEE EEE+EEEEE++
Sbjct: 450 KKEEEKEEEEEEAEEEKEEEEEKK 473
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.3 bits (69), Expect = 0.34
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 130 GFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
GFF + EEE EE E E+E+ EEE+EEEE+
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEK 30
Score = 26.8 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+G+ + EE E E+E+ EEE+EEEE+E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWF 34
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 30.3 bits (69), Expect = 0.37
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
E + EEEEE E E EE
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPE 293
Score = 29.5 bits (67), Expect = 0.77
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEE 156
I + EEEEE E E EE E
Sbjct: 270 ILAQRAEEEEESSEGAAETIEEPE 293
Score = 29.1 bits (66), Expect = 1.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ + EEEEE E E EE E+
Sbjct: 269 EILAQRAEEEEESSEGAAETIEEPEL 294
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ EEEEE E E EE E + E +
Sbjct: 274 RAEEEEESSEGAAETIEEPELDLETI 299
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 29.1 bits (66), Expect = 0.38
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E EE+E E EEE++++E+EEEE
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEY 43
Score = 27.2 bits (61), Expect = 1.8
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
EE+E E EEE++++E+EEEE E+
Sbjct: 22 EEDEILELEEEDDDDEDEEEEYEL 45
Score = 26.8 bits (60), Expect = 2.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+E E EEE++++E+EEEE E
Sbjct: 22 EEDEILELEEEDDDDEDEEEEYEL 45
Score = 25.6 bits (57), Expect = 6.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEE 157
+E+E E EEE++++E+EEEE E
Sbjct: 21 PEEDEILELEEEDDDDEDEEEEYEL 45
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 29.2 bits (66), Expect = 0.40
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEE 154
E ++EE++EEEEEE +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 0.42
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 136 EEEEEEEEEEEEEEEEEEEE 155
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 0.42
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 137 EEEEEEEEEEEEEEEEEEEE 156
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 0.42
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 138 EEEEEEEEEEEEEEEEEEEE 157
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 0.42
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 139 EEEEEEEEEEEEEEEEEEEE 158
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 30.3 bits (69), Expect = 0.42
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EE+++++EE +EE+EE + E
Sbjct: 119 AYRDLEEDDDDDEESDEEDEESSKSE 144
Score = 30.0 bits (68), Expect = 0.50
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+++++EE +EE+EE + E++E
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDE 147
Score = 30.0 bits (68), Expect = 0.57
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+++++EE +EE+EE + E++E+
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDED 148
Score = 29.6 bits (67), Expect = 0.82
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEE 157
++++++EE +EE+EE + E++E+
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDED 148
Score = 29.2 bits (66), Expect = 0.93
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++++EE +EE+EE + E++E+++
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDD 150
Score = 29.2 bits (66), Expect = 1.1
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+++EE +EE+EE + E++E++++
Sbjct: 127 DDDDEESDEEDEESSKSEDDEDDDD 151
Score = 28.8 bits (65), Expect = 1.3
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++ EE+++++EE +EE+EE + E+
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSED 145
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 124 KIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I EL + ++ + EE+++++EE +EE+EE
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEES 140
Score = 27.6 bits (62), Expect = 3.6
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++EE +EE+EE + E++E+++++
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDD 152
Score = 27.3 bits (61), Expect = 4.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + EE+++++EE +EE+EE
Sbjct: 114 PRYDDAYRDLEEDDDDDEESDEEDEESS 141
Score = 27.3 bits (61), Expect = 4.1
Identities = 7/24 (29%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E +EE+EE + E++E++++++++
Sbjct: 132 ESDEEDEESSKSEDDEDDDDDDDD 155
Score = 27.3 bits (61), Expect = 4.2
Identities = 8/24 (33%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+EE +EE+EE + E++E++++++
Sbjct: 130 DEESDEEDEESSKSEDDEDDDDDD 153
Score = 27.3 bits (61), Expect = 4.3
Identities = 8/24 (33%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE +EE+EE + E++E+++++++
Sbjct: 131 EESDEEDEESSKSEDDEDDDDDDD 154
Score = 26.5 bits (59), Expect = 7.5
Identities = 6/24 (25%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+EE + E++E+++++++++
Sbjct: 133 SDEEDEESSKSEDDEDDDDDDDDD 156
Score = 26.5 bits (59), Expect = 7.8
Identities = 6/25 (24%), Positives = 22/25 (88%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EE+EE + E++E+++++++++++
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDI 158
>gnl|CDD|233941 TIGR02585, cas_Cst2_DevR, CRISPR-associated protein Cas7/Cst2/DevR,
subtype I-B/TNEAP. CRISPR is a term for Clustered
Regularly Interspaced Short Palidromic Repeats. A number
of protein families appear only in association with
these repeats and are designated Cas (CRISPR associated)
proteins. This clade is a member of the DevR family
(TIGR01875) and includes the DevR protein of Myxococcus
xanthus, a protein whose expression appears to be
regulated through a number of means, including both
location and autorepression; DevR mutants are incapable
of fruiting body development [Mobile and
extrachromosomal element functions, Other].
Length = 310
Score = 30.1 bits (68), Expect = 0.43
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
+K + IG GFF + EEE E + + E ++
Sbjct: 261 SEKVEDEVHIGLLKGFFEENEEEAIELKPDGGVESIIVIFDK 302
>gnl|CDD|235359 PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha;
Provisional.
Length = 310
Score = 30.1 bits (69), Expect = 0.48
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 124 KIGYE-LGFFIQEEEEEEEEEEEEEEEEEEEE 154
KI E L F+ EE EE EEE EEEE E +
Sbjct: 214 KILVEQLSVFVDLEEAEEAEEEVEEEEPEFDP 245
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 30.0 bits (67), Expect = 0.51
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+E EEE+ + E + E EEE+EEEE+
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEI 109
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEE+ + E + E EEE+EEEE E
Sbjct: 87 EEEDNDRECPDTEAEEEDEEEEIE 110
Score = 26.6 bits (58), Expect = 8.2
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 55 WFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVG 114
W + ++A + QR+ + Q +D E+SE +E D +++ + G
Sbjct: 37 WLRKEKACALRQQRRHRLQRQHGVIDGENSE------------TER-PRDLTAALFAEAG 83
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
++ + + E + E EEE+EEEE E + EV
Sbjct: 84 EEAEEED------------NDRECPDTEAEEEDEEEEIEAPDPEV 116
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 29.7 bits (68), Expect = 0.54
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 15/46 (32%)
Query: 51 VVQVWFQ----NQRAKMKK--IQRKAKQQEGDKSLDKEDSEPHIKQ 90
+ V FQ ++ KM K ++ + KQ EGD P +K
Sbjct: 206 AIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGD---------PEVKG 242
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 29.5 bits (66), Expect = 0.60
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 63 MKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSV 122
+K +R+ Q++G + + + EP S E + S D S + P K+
Sbjct: 128 RQKQRRREDQEDGVRQPGRTEKSGSDFWEPPSSDEDDSDSEDSMSDLYPPELFTLKNPGK 187
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ G E F ++E+E E E E +++ +++
Sbjct: 188 EQNGDEDDDFETDDEDEMEVESPELQQKRSKKQSGS 223
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 29.6 bits (66), Expect = 0.62
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 77 KSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEE 136
+ + +P ++ ++ E SL SVQ K+ + K+ L EE
Sbjct: 158 TITENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEE 217
Query: 137 EEEEEEEEEEEEEEEEEEEEEE 158
++ +EE+EEEE EEE ++EE +
Sbjct: 218 KQPQEEQEEEEVEEEAKQEEGQ 239
Score = 28.1 bits (62), Expect = 1.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q +EE+EEEE EEE ++EE + ++
Sbjct: 219 QPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 29.3 bits (66), Expect = 0.65
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E ++++ EE EEEEE+EE+ E E
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLE 34
Score = 28.9 bits (65), Expect = 0.79
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++++ EE EEEEE+EE+ E E
Sbjct: 10 YESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 28.9 bits (65), Expect = 0.86
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+++ EE EEEEE+EE+ E E +V
Sbjct: 14 DDDSEEYEEEEEDEEDAESLESSDV 38
Score = 28.5 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
I E ++++ EE EEEEE+EE+ E
Sbjct: 7 IIDYESDDDDSEEYEEEEEDEEDAESL 33
Score = 27.4 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E ++++ EE EEEEE+EE+ E
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAES 32
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 29.0 bits (65), Expect = 0.69
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEEEEEE E++++ +E +V
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQV 116
Score = 27.5 bits (61), Expect = 2.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 134 QEEEEEEEEEEEEEEEEEEE 153
QEEEEEEEE E++++ +E +
Sbjct: 96 QEEEEEEEENEKQQQSDEAQ 115
Score = 27.1 bits (60), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEE 156
+EEEEEEEE E++++ +E +
Sbjct: 93 HTRQEEEEEEEENEKQQQSDEAQ 115
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 29.2 bits (66), Expect = 0.70
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E E E EEE E+
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 0.95
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
E E E E E EEE E+
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.5 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E E E EEE E
Sbjct: 130 CSVNMTECTGPEPEPEPEPEEEPE 153
Score = 26.9 bits (60), Expect = 4.9
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
QE+ +++ +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDE 210
Score = 26.5 bits (59), Expect = 5.3
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E E E EEE
Sbjct: 129 VCSVNMTECTGPEPEPEPEPEEEP 152
Score = 26.5 bits (59), Expect = 6.1
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 26.1 bits (58), Expect = 7.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 26.1 bits (58), Expect = 7.7
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E E E EEE
Sbjct: 128 PVCSVNMTECTGPEPEPEPEPEEE 151
Score = 26.1 bits (58), Expect = 8.3
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q+E+ +++ +E + +E+EEE++
Sbjct: 185 QQEKGAPDDDLDEYDYGDEDEEEDDE 210
Score = 26.1 bits (58), Expect = 8.6
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+++ +E + +E+EEE++E
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPP 212
Score = 26.1 bits (58), Expect = 8.7
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
++ +++ +E + +E+EEE++E
Sbjct: 187 EKGAPDDDLDEYDYGDEDEEEDDEP 211
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 29.8 bits (67), Expect = 0.70
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEE 157
I + ++ E+E+E E E +EE ++
Sbjct: 545 IDLDADDWTEDEDENEMETDEERKK 569
Score = 29.5 bits (66), Expect = 0.80
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEE 158
+ ++ E+E+E E E +EE ++
Sbjct: 548 DADDWTEDEDENEMETDEERKK 569
Score = 29.5 bits (66), Expect = 0.88
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 127 YELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
Y L + ++ EE + + ++ E+E+E E E
Sbjct: 531 YRLCWSLRNSTEERIDLDADDWTEDEDENEMET 563
Score = 28.7 bits (64), Expect = 1.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE + + ++ E+E+E E E +E
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDE 565
Score = 28.3 bits (63), Expect = 1.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+E + + ++ E+E+E E E +EE
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEE 566
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 28.8 bits (65), Expect = 0.76
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEE E++ ++ +EE EEEE+ E
Sbjct: 5 DEEEELEDDIDDLDEEAEEEEDGED 29
Score = 28.8 bits (65), Expect = 0.85
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E +EEEE E++ ++ +EE EEEE+
Sbjct: 3 EPDEEEELEDDIDDLDEEAEEEED 26
Score = 28.4 bits (64), Expect = 1.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+EEEE E++ ++ +EE EEEE+
Sbjct: 4 PDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEE E++ ++ +EE EEEE+ E++
Sbjct: 6 EEEELEDDIDDLDEEAEEEEDGEDL 30
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+E +EEEE E++ ++ +EE EEEE
Sbjct: 2 DEPDEEEELEDDIDDLDEEAEEEE 25
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 29.0 bits (65), Expect = 0.90
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 127 YELG-----FFIQEEEEEEEEEEEEEEEEEEEE 154
+E+G F++ + EEE + E E E+ EE
Sbjct: 226 FEIGVFFSRFYVGKGRRREEENDAEAESEKTEE 258
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 28.0 bits (63), Expect = 0.95
Identities = 5/25 (20%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E+ +++E+EE+E++ ++++++
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 27.3 bits (61), Expect = 1.8
Identities = 5/24 (20%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ +++E+EE+E++ +++++
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDD 73
Score = 26.9 bits (60), Expect = 2.2
Identities = 5/25 (20%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E+ +++E+EE+E++ ++++
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDD 73
Score = 26.9 bits (60), Expect = 2.7
Identities = 4/24 (16%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+++E+EE+E++ +++++++++
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDD 77
Score = 26.5 bits (59), Expect = 3.1
Identities = 4/25 (16%), Positives = 21/25 (84%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+++E+EE+E++ ++++++++++
Sbjct: 55 KKDEDEEDEDDVVLDDDDDDDDDDD 79
Score = 26.5 bits (59), Expect = 3.4
Identities = 4/25 (16%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+++E+EE+E++ ++++++++
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 26.5 bits (59), Expect = 3.9
Identities = 4/25 (16%), Positives = 22/25 (88%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
++E+EE+E++ ++++++++++++
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDL 80
Score = 25.7 bits (57), Expect = 6.6
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+ +++E+EE+E++ +++
Sbjct: 46 PAADAEDAAKKDEDEEDEDDVVLDDD 71
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 29.2 bits (66), Expect = 0.97
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPP 264
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEE 156
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEE 155
+ +E E EE E EE +EE E+
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 29.0 bits (66), Expect = 1.00
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I+EE E E E E E
Sbjct: 76 IEEEGEAEAAAAAEAAPEAPAPEPAPA 102
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 112 PVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
GD V+ +G + +E E E E E E
Sbjct: 62 EEGD------VVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAA 103
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 28.4 bits (64), Expect = 1.0
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
K+ LG +E+EEEEEEE E EE +EEE+ +E
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDEL 123
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 28.8 bits (65), Expect = 1.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ + EEE+ E+++E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNG 168
Score = 28.1 bits (63), Expect = 1.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++ + EEE+ E+++E EE E +
Sbjct: 141 VDDKPKIEEEKAEKDQEPEESETKLS 166
Score = 27.7 bits (62), Expect = 2.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ EEE+ E+++E EE E + +V
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 26.9 bits (60), Expect = 3.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
+++ + EEE+ E+++E EE E ++
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKL 165
>gnl|CDD|219594 pfam07816, DUF1645, Protein of unknown function (DUF1645). These
sequences are derived from a number of hypothetical
plant proteins. The region in question is approximately
270 amino acids long. Some members of this family are
annotated as yeast pheromone receptor proteins AR781 but
no literature was found to support this.
Length = 191
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 77 KSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSS 121
+SL E E EGE E V SP +KSSS
Sbjct: 53 RSLSPERGGGSSDSESTDEGELEGVPPSSYCVSSSPASSSRKSSS 97
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EE E+E E +E EE E E EV
Sbjct: 350 EESEDEVEIDESVIEEVAEMELLEV 374
Score = 26.4 bits (58), Expect = 7.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 121 SVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
V+++ + + EE +EE E+E E +E EE
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEE 365
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.3 bits (65), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
KK+ +V K E +EE E E+E+E+E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 27.7 bits (61), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
Q+ EE E E+E+E+E E E E E
Sbjct: 594 QKAREEREREKEKEKERERERERE 617
Score = 27.0 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEE 157
EE E E+E+E+E E E E E E
Sbjct: 598 EEREREKEKEKEREREREREAE 619
Score = 27.0 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEE 158
EE E E+E+E+E E E E E E
Sbjct: 598 EEREREKEKEKEREREREREAE 619
Score = 26.2 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+++ EE E E+E+E+E E E E E
Sbjct: 593 EQKAREEREREKEKEKERERERERE 617
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 28.8 bits (65), Expect = 1.2
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 124 KIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++++E++++++ ++E+EE++E +E
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKEL 178
Score = 26.1 bits (58), Expect = 9.1
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E++++++ ++E+EE++E +E E+
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 28.8 bits (65), Expect = 1.2
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I+EEEEEE E EEEEEEE+EEE++E
Sbjct: 20 IEEEEEEEAPEAEEEEEEEDEEEKKE 45
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 133 IQEEEEEEEEEEEEEEEEEE 152
+Q EEEEEE +EEEEEE
Sbjct: 70 VQSVEEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 138 EEEEEEEEEEEEEEEE 153
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 139 EEEEEEEEEEEEEEEE 154
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 140 EEEEEEEEEEEEEEEE 155
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 141 EEEEEEEEEEEEEEEE 156
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 142 EEEEEEEEEEEEEEEE 157
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 143 EEEEEEEEEEEEEEEE 158
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|227792 COG5505, COG5505, Predicted integral membrane protein [Function
unknown].
Length = 384
Score = 28.6 bits (64), Expect = 1.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 55 WFQNQRAKMKKIQRKAKQQEGDKSLDKEDSEP 86
W K + + KA EG + +P
Sbjct: 176 WKWRHYTKPDESKLKADGNEGASAESYWKRKP 207
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 28.2 bits (63), Expect = 1.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
KK+ L GY + F +E E+E++E +E EE+E + ++E
Sbjct: 75 YKKAYVTLAEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKE 117
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
E E + +E+E E E E EEE
Sbjct: 28 KIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 28.1 bits (63), Expect = 1.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 130 GFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
G+F ++EE+ EE+ +E + E EE
Sbjct: 12 GYFPLDDEEDYYEEDPRQEPRDPAVEPEEY 41
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 28.7 bits (64), Expect = 1.5
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEE 152
++G + Q+E E +E E E
Sbjct: 169 YFQLGTHHALYEQQEAETDEVMETIERNPHH 199
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 28.6 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
+ Y L ++E E E E E E E EEE
Sbjct: 291 LAYRLSKRKRQEAAEAEAEAAEAEAAAEPEEES 323
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
EE E+E+++E+EE+EE V
Sbjct: 55 AEEARRAPPAEDEDDDEDEEDEEPAV 80
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I EE E+E+++E+EE+EE
Sbjct: 53 IAAEEARRAPPAEDEDDDEDEEDEEPA 79
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 28.2 bits (63), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 121 SVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
++ KI EL EEEE EEE +E E+E+ E + E
Sbjct: 83 AMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTE 120
Score = 26.6 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
++EEEE EEE +E E+E+ E
Sbjct: 94 SDDEEEETEEESTDETEQEDPPET 117
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.4 bits (63), Expect = 1.5
Identities = 12/42 (28%), Positives = 33/42 (78%)
Query: 117 KKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
KK +++ K+G E EEE+++EE+++++++E+E++++++
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDD 74
Score = 26.5 bits (58), Expect = 6.5
Identities = 6/25 (24%), Positives = 25/25 (100%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EE+++EE+++++++E+E+++++++
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDD 75
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 28.4 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L +F EE EEEE E EEE +
Sbjct: 269 WLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 28.5 bits (63), Expect = 1.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
QEE +E+ ++++ + E E E E
Sbjct: 56 QEEPDEKTQDQQSLSDVERAEPEVE 80
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 28.5 bits (65), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 124 KIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
K+G EEE EE+ + + E +EE EEV
Sbjct: 495 KLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEV 530
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 28.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 105 WRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
W + S + +I E I + EEEEE E EE+EE E+E
Sbjct: 106 WSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPG 160
Score = 26.9 bits (59), Expect = 5.5
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 10/36 (27%)
Query: 133 IQEEEEEEEEEEEEE----------EEEEEEEEEEE 158
+ EEEEE E EE+EE +E+ EEEEEEE
Sbjct: 139 VLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 28.0 bits (63), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE EE+EE EE E +EE E
Sbjct: 228 LDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.6 bits (62), Expect = 2.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
I G + EEE EE+EE EE E +EE E
Sbjct: 220 ILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE EE+EE EE E +EE
Sbjct: 225 GGALDEEEAAIEEDEEVEEFEAKEE 249
Score = 26.9 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+EEE EE+EE EE E +EE
Sbjct: 227 ALDEEEAAIEEDEEVEEFEAKEEAA 251
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE E E EE+EE+++E+++
Sbjct: 583 EETETITVPENNEEDEEDDDEDDD 606
Score = 27.8 bits (62), Expect = 3.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE E E EE+EE+++E++
Sbjct: 582 SEETETITVPENNEEDEEDDDEDD 605
Score = 27.5 bits (61), Expect = 4.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
+E E E EE+EE+++E+++
Sbjct: 583 EETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 28.1 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++ EEEEEE EE EEE EE+ + +
Sbjct: 147 LELPEEEEEEPEEMEEELEEDAADRD 172
Score = 27.3 bits (61), Expect = 3.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEEV 159
E EEEEEE EE EEE EE+ +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADR 171
Score = 26.6 bits (59), Expect = 6.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEEEEE EE EEE EE+ + +
Sbjct: 149 LPEEEEEEPEEMEEELEEDAADRDAR 174
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 27.0 bits (60), Expect = 1.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F E E ++EEEEEEEEE++ E+ +E
Sbjct: 1 FLDTEAEVDDEEEEEEEEEDDLEDLSDE 28
Score = 25.5 bits (56), Expect = 6.5
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
F+ E E ++EEEEEEEEE++ E+ +
Sbjct: 1 FLDTEAEVDDEEEEEEEEEDDLEDLSDE 28
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 28.2 bits (63), Expect = 1.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E EEE +E ++ + ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEET 303
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EEE +E ++ + ++ EE ++ EE
Sbjct: 286 EEEPDEPDQTDPDDGEETDQIPEE 309
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E EEE +E ++ + ++ EE +++
Sbjct: 281 EPPEPEEEPDEPDQTDPDDGEETDQI 306
Score = 26.3 bits (58), Expect = 9.9
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
+EE +E ++ + ++ EE ++ EE
Sbjct: 286 EEEPDEPDQTDPDDGEETDQIPEE 309
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
++ +F + E E EE E EEE E+ E+E
Sbjct: 366 DILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 28.0 bits (62), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++ E E EE E EEE E+ E+E
Sbjct: 369 YFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 26.5 bits (58), Expect = 7.1
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 100 WVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
W +L+ K + E F E+ E E EE E EEE E+
Sbjct: 333 WRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVED 391
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I++ E E E + E+ EE+E+E++ E
Sbjct: 668 IEDSESESESDGEDGEEDEQEDDAEAN 694
Score = 26.4 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+E+E E E+ E E E + E+ EE
Sbjct: 661 DEDECEAIEDSESESESDGEDGEE 684
Score = 26.4 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E E+ E E E + E+ EE+E+E
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQE 688
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 27.9 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q E EE E EEEEE++EE++
Sbjct: 66 QRERLEELAPELLEEEEEKKEEKKG 90
Score = 27.1 bits (61), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE+ E EE E EEEEE++EE
Sbjct: 64 EEQRERLEELAPELLEEEEEKKEE 87
Score = 26.7 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEE 157
+E EE E EEEEE++EE++
Sbjct: 66 QRERLEELAPELLEEEEEKKEEKKG 90
Score = 26.7 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
++E+ E EE E EEEEE++EE+
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEK 88
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ +S ++ + E++++ E ++ E+E++E++E
Sbjct: 1343 QASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385
Score = 27.7 bits (62), Expect = 3.6
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++++ E ++ E+E++E++E+
Sbjct: 1363 SSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 27.3 bits (61), Expect = 3.9
Identities = 6/25 (24%), Positives = 20/25 (80%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEE 157
E++++ E ++ E+E++E++E+++
Sbjct: 1364 SSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 27.3 bits (61), Expect = 4.5
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E++++ E ++ E+E++E++E++
Sbjct: 1364 SSEDDDDSEVDDSEDEDDEDDEDD 1387
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 28.2 bits (63), Expect = 2.4
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ Y + E + + EEE + E ++ V
Sbjct: 319 VAYTIPRRRAARAAAEAAKVKREEESAQAEAKDSV 353
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 27.7 bits (62), Expect = 2.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
FF ++ EE EE+EE E E+
Sbjct: 202 FFWRDPEEAEEKEEAAAETAGVEDAAAAA 230
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 27.6 bits (62), Expect = 2.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
E G + +E+ EEE + + EEE +
Sbjct: 16 ENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 27.9 bits (62), Expect = 2.6
Identities = 10/27 (37%), Positives = 24/27 (88%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F + E+++ +E+E+++E+E+E+E+E+E
Sbjct: 884 FQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEE 157
F E+++ +E+E+++E+E+E+E+E+E
Sbjct: 884 FQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|224532 COG1617, COG1617, Uncharacterized conserved protein [Function
unknown].
Length = 158
Score = 27.4 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
EL F+ EE E +EE EE EE+ E V
Sbjct: 113 KCSELRDFVLEEAEVLRITDEELEEAGEEDVPELV 147
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
++E +E EEE+ +EEEEE
Sbjct: 215 NHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
I+ ++E +E EEE+ +EEEEE
Sbjct: 212 PIENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 27.3 bits (61), Expect = 2.8
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I EE+ EE+E E+EE+E +EE+E+E
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 27.8 bits (62), Expect = 2.8
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 80 DKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEE 139
+ D+ P I+ +SEG+ R S++ K S+L + Q +E
Sbjct: 1 NTVDAVPRIEHYRNSEGQGGPKRN--RPSLEELHDLLDKVVSLLGPLADYTNNGQGMKEH 58
Query: 140 EEEEEEEEEEEEEEEE 155
EE E+ E +E+
Sbjct: 59 EEAEDAEGTKEKPPAG 74
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 27.4 bits (61), Expect = 2.8
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E EEE
Sbjct: 131 AEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 26.6 bits (59), Expect = 4.2
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E EEE
Sbjct: 132 EAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 26.2 bits (58), Expect = 7.0
Identities = 5/24 (20%), Positives = 5/24 (20%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E E E EE
Sbjct: 130 AAEAAAAEAAAPAAEAAAAAAAEE 153
>gnl|CDD|233752 TIGR02153, gatD_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
D. This peptide is found only in the Archaea. It is
part of a heterodimer, with GatE (TIGR00134), that acts
as an amidotransferase on misacylated Glu-tRNA(Gln) to
produce Gln-tRNA(Gln). The analogous amidotransferase
found in bacteria is the GatABC system, although GatABC
homologs in the Archaea appear to act instead on
Asp-tRNA(Asn) [Protein synthesis, tRNA aminoacylation].
Length = 404
Score = 27.7 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
LK GY +GF I E E EE E E E E
Sbjct: 22 LKNGYNIGFKISEIRNIEVLEEGSEPREVPPPAEIE 57
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 27.0 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEE 156
+ E +EEEEEE EEEE E + E
Sbjct: 51 VSESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 5.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEE 157
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 5.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEE 158
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 25.8 bits (57), Expect = 9.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 139 EEEEEEEEEEEEEEEEEEEEV 159
E +EEEEEE EEEE E +V
Sbjct: 53 ESSDEEEEEEAEEEEAETGDV 73
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 26.8 bits (59), Expect = 3.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E ++EE++EEEEEEE+++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDL 106
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 126 GYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
GY L + + +EEE E+E EEEE E
Sbjct: 387 GYPLAEALSKVKEEERPREKEGTEEEERREIT 418
Score = 26.6 bits (59), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+ +EEE E+E EEEE E V
Sbjct: 395 SKVKEEERPREKEGTEEEERREITV 419
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 27.5 bits (61), Expect = 3.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E EE E E E+E EEEEEE+ +V
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADV 84
Score = 26.0 bits (57), Expect = 9.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
EE E E E+E EEEEEE+ + E
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVE 85
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 27.7 bits (62), Expect = 3.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
F +E +EEE++EE++ ++ EE ++ E
Sbjct: 67 FSEESDEEEDDEEDDNDDSEENKDTVEE 94
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 27.7 bits (62), Expect = 3.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q+E + EE+ +E E+EE ++V
Sbjct: 691 QQEAKALNVEEQSVQETEQEERVQQV 716
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.3 bits (61), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E E EE E+E EEE EEE E E+
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAEL 38
Score = 26.9 bits (60), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE E EE E+E EEE EEE E
Sbjct: 12 VEETEVEEAVEDEVEEETVEEESEA 36
Score = 26.9 bits (60), Expect = 4.1
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EE EE E EE E+E EEE EEE
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEES 34
Score = 26.9 bits (60), Expect = 4.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EE E EE E+E EEE EEE E
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESE 35
Score = 26.9 bits (60), Expect = 4.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EEE EE E EE E+E EEE EE
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEE 32
Score = 26.5 bits (59), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ E EE E+E EEE EEE E E +
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELL 39
Score = 26.1 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E+E EEE EEE E E +EE+ ++
Sbjct: 22 EDEVEEETVEEESEAELLDEEQAKI 46
Score = 25.7 bits (57), Expect = 9.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE E+E EEE EEE E E +E
Sbjct: 17 VEEAVEDEVEEETVEEESEAELLDE 41
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 26.5 bits (59), Expect = 3.8
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 98 SEWVSLD-WRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
W +D + K G + I ++ +++ +EE+ +EE++E+E
Sbjct: 68 RSWYPVDEIDEEIIPLEEKFDKKKKKFMDGDDD--IIDDDILPDDDFDEEDLDEEDDEDE 125
Query: 157 EE 158
E+
Sbjct: 126 ED 127
Score = 26.1 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEE 156
I +++ +EE+ +EE++E+EE+EE
Sbjct: 106 ILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 26.2 bits (58), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEE 154
I+ +E + EE EEE E E E E
Sbjct: 78 IEIKERKNEETEEENEIEGESE 99
Score = 25.4 bits (56), Expect = 8.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 127 YELGFFIQEEEEEEEEEEEEEEEEEEE 153
Y G +E + EE EEE E E E E
Sbjct: 73 YLEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 27.0 bits (60), Expect = 4.0
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 74 EGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFI 133
E D ++ E + + + +K SSS
Sbjct: 111 ESDLENLNDEDTSSESSYGFKEESKKGSAETLKLE------EKDSSSSEGST-------- 156
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E EEEEEE EEEEE +E E+
Sbjct: 157 VDLEPPEEEEEEIAEEEEEVKEPED 181
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 27.2 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
EEE +EE +E++EE+++EE E ++
Sbjct: 272 ILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 26.9 bits (60), Expect = 4.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 129 LGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L F +EEE+E+E E+E++ +E E +E
Sbjct: 11 LSFGDDDEEEDEDEGEDEKKVPKESSEPDE 40
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
EE E +E EE+E E + E EE
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEE 274
Score = 27.1 bits (60), Expect = 5.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
E+ E EE E +E EE+E E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAE 266
Score = 26.3 bits (58), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q + E+ E EE E +E EE+E
Sbjct: 240 QPDNNEDSEAGREESEGSDESEEDE 264
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 27.0 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 9/45 (20%)
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
D K SV + +LG +E+EEE+EE+EE EEE + +
Sbjct: 462 DGKPFKSVARGDLDLG---------KEDEEEKEEKEEAEEEFKPL 497
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 27.2 bits (60), Expect = 4.6
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 78 SLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEE 137
+KE+SE E +S +L+ + +S D+ + ++ K+ G +E E
Sbjct: 648 ESEKEESESDGSFI---EVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIE 704
Query: 138 EEEEEEEEEEEEEEEEEEEEE 158
+ +E EE+ EEE++
Sbjct: 705 DLLFDESEEDNIVGMIEEEKD 725
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 27.2 bits (60), Expect = 4.7
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 78 SLDKEDSEPHIKQEPHSEGESEWVSL--------DWRSSVQSPVGDKKKSSSVLKIGYEL 129
S DK+ E ++E ++ VS+ V P+ + S S ++ + +
Sbjct: 358 STDKKQLEYCCRRELTVSADTIVVSILEEALASKFVFFEVIKPLPTETGSDSWVEASFPV 417
Query: 130 GFFIQEEEEEEEEEEEEEEEEEEEE 154
G E+ +E EEE E
Sbjct: 418 GHKYSGTEQPSCSAPKEPEEELPAE 442
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 27.3 bits (61), Expect = 4.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+E EEE + E E E + ++E+E
Sbjct: 232 TEEREEETDVEIETTSETKGTKQEQE 257
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 26.5 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
VL+ G + + EE EE E +EEE
Sbjct: 149 VLQAGLWYAEWKDAKLLEEFAAEEAEAAAAAKEEESA 185
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 26.4 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
QE+ EE E E E++EE +E E E+
Sbjct: 10 QEQVSEEIEAEVEQQEEADEAELEDE 35
Score = 26.4 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+ EE E E E++EE +E E E+E +E
Sbjct: 13 VSEEIEAEVEQQEEADEAELEDELDEA 39
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 26.1 bits (57), Expect = 5.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEE 157
E E+ EE +EEEEEEE+E+
Sbjct: 77 ATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 25.7 bits (56), Expect = 6.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEE 158
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 26.1 bits (58), Expect = 5.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
++EE++ +EEE + + EE +E E E
Sbjct: 99 RDEEKKLDEEEAKRQHEEAKEREREK 124
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 26.9 bits (60), Expect = 5.3
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
I +EEEE +E++++E++ + ++
Sbjct: 225 IDDEEEERVLADEDDDDEDDMFDMDD 250
Score = 26.5 bits (59), Expect = 6.6
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+LK+ E+ + + ++EEEE +E++++E++ +
Sbjct: 211 LLKLDVEIQNELDDIDDEEEERVLADEDDDDEDDMFD 247
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 26.6 bits (59), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EE+ E EE E+EE E+ EE EV
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEESNEV 54
Score = 26.6 bits (59), Expect = 5.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+K+ E + E +EE++ +EE+ E EE E+EE +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEII 45
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 26.9 bits (60), Expect = 5.3
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 63 MKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSV 122
+KI+ K+ +E + + E E +GE+ W+ + D +++S +
Sbjct: 315 RRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRK-KLGKLKEGEDDEENSGL 373
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L + F+Q E ++EE + E EE E E E
Sbjct: 374 LSMK-----FMQRAEARKKEENDAEIEELRRELEGE 404
Score = 26.6 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 123 LKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
L+ G EL I+ + EE+E+E+ + EEE+E+++E
Sbjct: 308 LRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDE 343
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 26.9 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ G Q E EEEE++E++EE+++E
Sbjct: 289 KRGGVPQGGGEAAASAEEEEDDEDDEEDDDE 319
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 135 EEEEEEEEEEEEEEEEEE 152
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 136 EEEEEEEEEEEEEEEEEE 153
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 137 EEEEEEEEEEEEEEEEEE 154
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 138 EEEEEEEEEEEEEEEEEE 155
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 139 EEEEEEEEEEEEEEEEEE 156
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 140 EEEEEEEEEEEEEEEEEE 157
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 141 EEEEEEEEEEEEEEEEEE 158
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 25.7 bits (57), Expect = 7.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 142 EEEEEEEEEEEEEEEEEV 159
++EE++EE EEE +
Sbjct: 84 AAAKKEEKKEESEEESDD 101
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 26.1 bits (58), Expect = 5.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEE 157
F+ EEEE E+EE E+++EE E +E
Sbjct: 31 LFVPEEEEAEDEELEDDDEEILVEGDE 57
Score = 25.7 bits (57), Expect = 7.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EEEE E+EE E+++EE E +E+
Sbjct: 34 PEEEEAEDEELEDDDEEILVEGDEI 58
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 26.5 bits (57), Expect = 5.8
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 114 GDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
G K K K+G + ++E EEEEE E EEE EEE E E
Sbjct: 39 GGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPE 83
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 26.5 bits (58), Expect = 5.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q + + EEEE EE + EEEE+EEV
Sbjct: 171 QPDVDNEEEERLEESDGREEEEDEEV 196
>gnl|CDD|234089 TIGR03020, EpsA, transcriptional regulator EpsA. Proteins in
this family include a C-terminal LuxR transcriptional
regulator domain (pfam00196). These proteins are
positioned proximal to either EpsH-containing
exopolysaccharide biosynthesis operons of the
Methylobacillus type , or the associated
PEP-CTERM-containing genes.
Length = 247
Score = 26.7 bits (59), Expect = 6.1
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 27 SCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRA 61
S + Q A+ GL R+ W +R
Sbjct: 60 SPLRYVRDAQYSRAIHPPDGLLHRLTNAWGAGKRQ 94
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 26.7 bits (59), Expect = 6.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q+ ++ +EE E E+EEEEEE EE
Sbjct: 423 QQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|183271 PRK11671, mltC, murein transglycosylase C; Provisional.
Length = 359
Score = 26.6 bits (59), Expect = 6.2
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 27 SCCPGHKTTQVREALAKDT 45
SC K EA KDT
Sbjct: 16 SCSSTKKGDTYNEAWVKDT 34
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 26.4 bits (58), Expect = 6.4
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
+ EEE+E EEEEEE EEEEE + E
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSE 30
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 26.4 bits (59), Expect = 6.4
Identities = 9/26 (34%), Positives = 9/26 (34%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
E E E E EE EEE
Sbjct: 28 PEPPPPEPAAPPPEPPEPEEVPEEEA 53
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 27.0 bits (59), Expect = 6.4
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 108 SVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+++ P+ ++ +LK + + EEEE E +EE EE EE+++E E++
Sbjct: 218 ALKHPLEKLEEEIDILKNDGDK---VAEEEEFELDEEHEEAEEDKKEALEKI 266
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 6.4
Identities = 5/27 (18%), Positives = 20/27 (74%)
Query: 132 FIQEEEEEEEEEEEEEEEEEEEEEEEE 158
++ + ++++E++E++EE + E+++
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDD 73
Score = 25.8 bits (57), Expect = 8.0
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++++E++E++EE + E+++E
Sbjct: 51 GGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.8 bits (57), Expect = 8.7
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
+E+ + ++++E++E++EE + E+
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDD 72
>gnl|CDD|226921 COG4548, NorD, Nitric oxide reductase activation protein [Inorganic
ion transport and metabolism].
Length = 637
Score = 26.7 bits (59), Expect = 6.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 103 LDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEE 145
+R ++P G+ +K+++ + E I E+E+ E
Sbjct: 232 TLYREEAEAPEGEDEKAAAKPQEASETTRQIATREDEDRHSER 274
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 26.2 bits (58), Expect = 6.6
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
VL+ G +++EE EE +E ++
Sbjct: 149 VLQAGLWYAERKDAKQKEEFAAEERKEALAAAAKKSA 185
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 26.6 bits (59), Expect = 6.7
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 94 SEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEE 153
+ E+E S D + KK I E+ E+ E+ + + EE E E+
Sbjct: 316 EDTENEDESDDNADDF---DDNDKKGDVGFDINAEVEDDPDEDAEDGGDGGDAEEFEAEK 372
Query: 154 EEEEEV 159
E +V
Sbjct: 373 EPMLKV 378
>gnl|CDD|130181 TIGR01111, mtrA, N5-methyltetrahydromethanopterin:coenzyme M
methyltransferase subunit A. This model describes
N5-methyltetrahydromethanopterin: coenzyme M
methyltransferase subunit A in methanogenic archaea.
This methyltranferase is a membrane-associated enzyme
complex that uses methyl-transfer reaction to drive
sodium-ion pump. Archaea have evolved energy-yielding
pathways marked by one-carbon biochemistry featuring
novel cofactors and enzymes. This transferase (encoded
by subunit A) is involved in the transfer of 'methyl'
group from N5-methyltetrahydromethanopterin to coenzyme
M. In an accompanying reaction, methane is produced by
two-electron reduction of methyl-coenzyme M by another
enzyme, methyl-coenzyme M reductase [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 238
Score = 26.3 bits (58), Expect = 6.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 127 YELGFFIQEEEEEEEEEEEEEE 148
++ I E EEE EEEE E
Sbjct: 159 FDEDPMIIELEEEGGEEEEGGE 180
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 25.7 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
+EE EEEEE E E+EE+
Sbjct: 26 EEEAAAAAPAPAPEEEEEAELEDEEL 51
Score = 25.7 bits (57), Expect = 7.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
EEE EEEEE E E+E
Sbjct: 24 TAEEEAAAAAPAPAPEEEEEAELEDE 49
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 26.5 bits (59), Expect = 7.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEE 157
I + + + E EEE+E + EEE++E
Sbjct: 477 KSITKGDLDLELLEEEDEADSEEEKKE 503
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 26.5 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
EE EEE EE EE + E+ + E+++
Sbjct: 834 EEPEEETAEEPEEVDPEDVKSEDDI 858
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEEV 159
I EE E+ E+ E+ E +EE ++EV
Sbjct: 467 ILEEIREKVLEQAEQGCENQEEVKKEV 493
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 26.3 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ E+E++ +E+E++++ EEEE
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEES 244
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+ E+E++ +E+E++++ EEEE
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEE 243
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 26.6 bits (58), Expect = 7.8
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
IGY++ +++ E+E +E+EE+ ++ +E+ EE
Sbjct: 199 IGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEE 232
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 26.7 bits (59), Expect = 8.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
Q EEE+EEE E + +++
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDE 33
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 26.2 bits (57), Expect = 8.2
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 78 SLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPVGDKKKSSSVLKIGYELGFFIQEEE 137
+L KE + E E V + + GDK++ ++ +Q +
Sbjct: 256 ALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDR 315
Query: 138 EEEEEEEEEEEEEEEEEEEE 157
+E EE+EE++E EE E
Sbjct: 316 PDEIGEEKEEDDENEENERH 335
Score = 26.2 bits (57), Expect = 8.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E + + +E EE+EE++E EE E
Sbjct: 310 EVQSDRPDEIGEEKEEDDENEENE 333
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 26.3 bits (58), Expect = 8.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEE 156
Q+ ++ EEE E +EEEE E
Sbjct: 423 QQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 25.6 bits (56), Expect = 8.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 141 EEEEEEEEEEEEEEEEEEV 159
++EEE+EEE E +EEE+
Sbjct: 96 KKEEEKEEEIPEPTKEEEL 114
Score = 25.6 bits (56), Expect = 9.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 134 QEEEEEEEEEEEEEEEEE 151
++EEE+EEE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
Score = 25.6 bits (56), Expect = 9.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 133 IQEEEEEEEEEEEEEEEEEEE 153
+ ++EEE+EEE E +EEE
Sbjct: 93 LTSKKEEEKEEEIPEPTKEEE 113
Score = 25.6 bits (56), Expect = 9.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 137 EEEEEEEEEEEEEEEEEEEEEEV 159
++EEE+EEE E +EEE E+
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGEI 118
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 26.4 bits (58), Expect = 8.6
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 55 WF-QNQRAKMKKIQRKAKQQEGDKSLDKEDSEPHIKQEPHSEGESEWVSLDWRSSVQSPV 113
WF + K + A Q K L + SE KQ GE V+LDW + +SP+
Sbjct: 337 WFGKVCVPPELKTEANASQ----KQLHEALSEAAAKQPS---GEHGLVALDWFNGNRSPL 389
Query: 114 GD 115
D
Sbjct: 390 VD 391
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 26.2 bits (58), Expect = 8.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 128 ELGFFIQEEEEEEEEEEEEEEEEEEEEEE 156
E F + + E E +EE++++++E
Sbjct: 450 EPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 26.4 bits (59), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ ++L FI+E EE EE E E+ E ++
Sbjct: 324 LCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYH 357
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 25.5 bits (56), Expect = 9.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEE 158
Q EEE +E EEEE EEEE++E
Sbjct: 54 QAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 25.6 bits (56), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEEV 159
E+E E E EE EE+ E +EV
Sbjct: 10 EDEPSEPEIEEGAEEDSESNNNDEV 34
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 26.5 bits (58), Expect = 9.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 133 IQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+E E + +EE+ E+ +E E +
Sbjct: 965 LSEDESENDSSDEEDGEDWDELESKA 990
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 26.2 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E ++ +EE+EE E+E EEE
Sbjct: 107 NYEADKLDEEQEERVEKEREEELA 130
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 26.1 bits (57), Expect = 9.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 7 QNFQTIRLLNLKVKLKTSFNSC 28
+ FQ +R L LK+++ SF+ C
Sbjct: 327 RLFQMVRELKLKLQVVMSFHEC 348
>gnl|CDD|187818 cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily
protein Cas7. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas7 is a RAMP superfamily protein; Subunit of the
Cascade complex; also known as Cst2/DevR family.
Length = 302
Score = 25.9 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 116 KKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
+K + IG G F E EE +E + E E EE
Sbjct: 254 SEKIEDLEHIGLLKGKFANELEEIKELLADGGVESEVGIFEE 295
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.125 0.348
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,955,359
Number of extensions: 708438
Number of successful extensions: 14648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8686
Number of HSP's successfully gapped: 2114
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (24.8 bits)