RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10851
(159 letters)
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 46.3 bits (110), Expect = 2e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
L+ F + H + E L+K VR +Q WF+ +R + K
Sbjct: 8 LEKVFTAITK-HPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 45.9 bits (109), Expect = 3e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE 74
RE LA L +QVWF N+RAK ++ ++ Q+
Sbjct: 31 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 67
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 44.8 bits (106), Expect = 7e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
T+ E L K+T LS ++ W N+R K K I
Sbjct: 27 DTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 44.7 bits (106), Expect = 7e-08
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
T ++ +A T L++ V WF N R ++ +
Sbjct: 31 TEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 45.4 bits (107), Expect = 7e-08
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 20 KLKTSF--NSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
K+ E +TG+ +V+++W N +
Sbjct: 31 KMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 44.2 bits (104), Expect = 2e-07
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 38 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
+E LAK G++V V WF N+R + KK K +++
Sbjct: 34 KEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEE 69
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 43.3 bits (102), Expect = 3e-07
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
T R +A+ L+ R V++WFQN+R KMKKI + +
Sbjct: 39 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 42.5 bits (100), Expect = 6e-07
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 71
++E L + TGLS RV++VWFQN+R K KK K
Sbjct: 29 DALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMK 66
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 42.7 bits (100), Expect = 8e-07
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 69
+ R +A L+ V++WFQN+R K KK +R+
Sbjct: 53 SRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 41.7 bits (98), Expect = 1e-06
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64
L+ F S + + + L+K SVR +Q WF+++R + K
Sbjct: 16 LEKVFVSVTK-YPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.4 bits (97), Expect = 1e-06
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
L+ F + + + R+ LAK LS R V+ WFQN+RAK ++
Sbjct: 15 LEKKFETQK--YLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 40.7 bits (95), Expect = 2e-06
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
L+ F ++Q +A++ L VV+VWF N+R + K+++
Sbjct: 14 LERHFGEHS--KPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 40.5 bits (95), Expect = 3e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
T + R +A L+ R +++WFQN+R K KK
Sbjct: 23 TRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 39.9 bits (93), Expect = 4e-06
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
L+ F + + R + L+ V++WFQN+RAK K++
Sbjct: 15 LERKFRQKQ--YLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 40.4 bits (94), Expect = 5e-06
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQ 72
L+ +FN H +A + GL+ Q WF+ + A+ ++ + +
Sbjct: 16 LEYNFNKVNK-HPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSE 66
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 38.7 bits (90), Expect = 1e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
T R ++ T LS R + +WFQN+R K KK
Sbjct: 27 TKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 39.3 bits (91), Expect = 2e-05
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 31 GHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE 74
+ + L+ ++ V WF N+R ++K+ A E
Sbjct: 38 NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIAAILE 81
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 38.3 bits (89), Expect = 2e-05
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAK 62
LK FN + T + R+ L+ + GL+ +++WFQN RAK
Sbjct: 14 LKREFNENR--YLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 38.8 bits (90), Expect = 2e-05
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE 74
+ RE LA L+ V++WFQN R KMK+ + Q+
Sbjct: 28 SAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 68
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 38.8 bits (90), Expect = 2e-05
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
L+ F + T L+ L V++WF+N+R + K + K Q
Sbjct: 16 LEQHFLQGR--YLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 66
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 38.0 bits (88), Expect = 2e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKI 66
T++ +A+ + V++VWF N+R K K+I
Sbjct: 24 TSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 37.6 bits (87), Expect = 4e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 39 EALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
E LA+ T L+ +QVWFQN+RA+++K
Sbjct: 33 EELAQRTNLTEARIQVWFQNRRARLRKQHT 62
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 37.2 bits (86), Expect = 4e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
L+ F + + R LA L ++VWFQN+R K K+
Sbjct: 14 LEKEFYKEN--YVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 37.4 bits (86), Expect = 6e-05
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 36 QVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+ L+ L + +FQNQR +K
Sbjct: 36 EAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 36.8 bits (85), Expect = 6e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMK 64
++ +E +AK G++ V+VWF N+R + K
Sbjct: 23 NSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 36.5 bits (84), Expect = 8e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 41 LAKDTGLSVRVVQVWFQNQRAKMKKIQ 67
+A T L+ V+VWF+N+RAK +K +
Sbjct: 34 IAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 36.5 bits (84), Expect = 1e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKK 65
+ Q +A GL VV+VWF N+R K K+
Sbjct: 34 SLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 36.2 bits (83), Expect = 2e-04
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQ 73
+ RE LA L+ V++WFQN R K K+ Q + +
Sbjct: 35 SAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYE 74
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 35.2 bits (81), Expect = 2e-04
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 21 LKTSFNSCCPGHKTTQVREALAKDTGLSVRVVQVWFQNQR 60
L F + +++ +++ GL + V +F N R
Sbjct: 13 LHAIFKENK--RPSKELQITISQQLGLELSTVSNFFMNAR 50
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.1 bits (80), Expect = 5e-04
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 32 HKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQEGDKS 78
T + L T L+ R + WF ++ + K + E +
Sbjct: 28 VLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAG 74
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 31.3 bits (70), Expect = 0.010
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 29 CPGHKTTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 68
C + + ++ V WF N+R + +
Sbjct: 39 CIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 78
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 30.1 bits (67), Expect = 0.026
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 34 TTQVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQQE 74
+ + L + TGL + WF + R +K Q K +
Sbjct: 29 RREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDN 69
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 27.2 bits (59), Expect = 0.95
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 133 IQEEEEEEEEEEEEEEE 149
++ E++ E+ E
Sbjct: 305 VEAEDKTEKLAAALEHH 321
Score = 26.5 bits (57), Expect = 1.8
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 130 GFFIQEEEEEEE-------EEEEEEEEEEEEEEEE 157
G F+ +EEE E E++ E+ E
Sbjct: 287 GSFVLDEEENGRVISVWKVEAEDKTEKLAAALEHH 321
Score = 26.5 bits (57), Expect = 1.8
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 143 EEEEEEEEEEEEEEEE 158
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 26.2 bits (57), Expect = 1.7
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 122 VLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEE 157
+ + + + +++E E+ ++ EEEE + E E+
Sbjct: 215 LTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
Score = 24.6 bits (53), Expect = 6.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 136 EEEEEEEEEEEEEEEEEEEEEEE 158
+++E E+ ++ EEEE + E E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 25.8 bits (56), Expect = 2.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 125 IGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
+ + I EE E+ E E+E+EE E++++
Sbjct: 210 MRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 25.3 bits (55), Expect = 2.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 111 SPVGDKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEEEEEEEV 159
+PV S S+L G EL E + E +EEEEE + +E+ +
Sbjct: 28 TPVDPNALSFSLLVGGQEL------EGAQALGPEVQEEEEEPQGDEDVL 70
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 24.8 bits (54), Expect = 2.9
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 115 DKKKSSSVLKIGYELGFFIQEEEEEEEEEEEEEEEEEE-----EEEEEE 158
D++ +GY++ + + + + EE+ + +E EEE +E
Sbjct: 44 DQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQE 92
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 3.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ + +E E E E +EEE
Sbjct: 79 EQIAKGQEIVESLNETELLVDEEE 102
Score = 25.4 bits (55), Expect = 3.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ + +E E E E +EE
Sbjct: 78 PEQIAKGQEIVESLNETELLVDEE 101
Score = 24.6 bits (53), Expect = 6.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+ + +E E E E +E
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDE 100
Score = 24.2 bits (52), Expect = 7.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ + +E E E E +EEE+
Sbjct: 80 QIAKGQEIVESLNETELLVDEEEK 103
Score = 24.2 bits (52), Expect = 8.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 134 QEEEEEEEEEEEEEEEEEEEEEEEEV 159
QE+ + E+ + +E E E E V
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLV 98
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 25.4 bits (55), Expect = 3.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 121 SVLKIGYELGFFIQEEEEEEEEEEEEEEEEEEE 153
+ I + GF I + E+ E +E +E+E E
Sbjct: 210 QLSCITKQDGFKIYDNEKTAELIKELKEKEAAE 242
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 24.4 bits (53), Expect = 5.1
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
+ E+ + ++ ++ EE+E ++ E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLE 26
Score = 24.4 bits (53), Expect = 5.6
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 135 EEEEEEEEEEEEEEEEEEEEEEEE 158
E+ + ++ ++ EE+E ++ E
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLEN 27
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 24.9 bits (54), Expect = 5.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 131 FFIQEEEEEEEEEEEEEEEEEEEEEEEE 158
F I + EEE + ++ EE+E
Sbjct: 60 FNINNSIPPTFDGEEEPSQGQKVEEQEP 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.305 0.125 0.348
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 587,017
Number of extensions: 25424
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 195
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (22.8 bits)