BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10857
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 84.3 bits (207), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
GR+C+VLF Y+P N DELEL V DVIDV+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 4 GRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKEL 59
Score = 84.3 bits (207), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
GR+C+VLF Y+P N DELEL V DVIDV+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 4 GRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKEL 59
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GS + V FDY+ Q DEL L GD+I I GWW G L
Sbjct: 1 GSMGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTL 44
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 44/57 (77%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
C+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+ E+
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES 77
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 44/57 (77%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
C+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+ E+
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES 77
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
V F Y Q DEL L+ GD+I + GWWEG+L
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL 58
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 82.8 bits (203), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
Score = 82.8 bits (203), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GSS V F Y Q DEL L+ GD+I + GWWEG+L
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL 47
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 79.3 bits (194), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Score = 79.3 bits (194), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Score = 34.7 bits (78), Expect = 0.050, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GS + V F+Y Q DEL L+ GD+I GWW G L
Sbjct: 4 GSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL 47
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 77.4 bits (189), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 77.4 bits (189), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 6 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+ V F+Y Q DEL L+ GD+I GWW G L
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL 41
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAETMT 117
R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P ET
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETED 74
Query: 118 AESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE 177
E N +P A+ A YT DE+ L + ++V+ ++ +
Sbjct: 75 PEP-------NYAGEPYVAIKA-------------YTAVEGDEVSLLEGEAVEVIHKLLD 114
Query: 178 GWWRGRLRDRTGVFPSNFVEE 198
GWW R D TG FPS ++++
Sbjct: 115 GWWVIRKDDVTGYFPSMYLQK 135
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 12 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-------------TEQP--- 55
DY E+ L GD++ + GWW + +R + TE P
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPN 78
Query: 56 --GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 79 YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAETMT 117
R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P ET
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETED 74
Query: 118 AESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE 177
E N +P A+ A YT DE+ L + ++V+ ++ +
Sbjct: 75 PEP-------NYAGEPYVAIKA-------------YTAVEGDEVSLLEGEAVEVIHKLLD 114
Query: 178 GWWRGRLRDRTGVFPSNFVEE 198
GWW R D TG FPS ++++
Sbjct: 115 GWWVIRKDDVTGYFPSMYLQK 135
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 12 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-------------TEQP--- 55
DY E+ L GD++ + GWW + +R + TE P
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPN 78
Query: 56 --GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 79 YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
Score = 35.0 bits (79), Expect = 0.037, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51
+ Y AQ+ DEL+ D+I I+ GWW G L R +Q +
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL-RGKQGL 51
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAE 114
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P E
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 115 TMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE 174
T E N +P A+ A YT DE+ L + ++V+ +
Sbjct: 72 TEDPEP-------NYAGEPYVAIKA-------------YTAVEGDEVSLLEGEAVEVIHK 111
Query: 175 VEEGWWRGRLRDRTGVFPSNFVEE 198
+ +GWW R D TG FPS ++++
Sbjct: 112 LLDGWWVIRKDDVTGYFPSMYLQK 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 12 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-------------TEQP--- 55
DY E+ L GD++ + GWW + +R + TE P
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPN 78
Query: 56 --GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 79 YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAE 202
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P E
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 203 TMTAESRHRKESNNNEADPAKALTATIGE 231
T E + E KA TA G+
Sbjct: 72 TEDPEPNYAGEPYVA----IKAYTAVEGD 96
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAE 114
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P E
Sbjct: 11 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 70
Query: 115 TMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE 174
T E N +P A+ A YT DE+ L + ++V+ +
Sbjct: 71 TEDPEP-------NYAGEPYVAIKA-------------YTAVEGDEVSLLEGEAVEVIHK 110
Query: 175 VEEGWWRGRLRDRTGVFPSNFVEE 198
+ +GWW R D TG FPS ++++
Sbjct: 111 LLDGWWVIRKDDVTGYFPSMYLQK 134
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 12 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-------------TEQP--- 55
DY E+ L GD++ + GWW + +R + TE P
Sbjct: 18 DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPN 77
Query: 56 --GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 78 YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 134
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAE 202
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P E
Sbjct: 11 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 70
Query: 203 TMTAESRHRKE 213
T E + E
Sbjct: 71 TEDPEPNYAGE 81
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VEE+P+
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS 64
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VEE+P+
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS 64
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GSS + + A++ DEL L KGD++ + GWW G L
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL 47
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 111
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 199
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLL 44
F YT DELT R+G++I I ++G GWW+G L
Sbjct: 13 FPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL 48
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 112
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 6 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 200
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 6 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQ--SGGWWEGLLVRER 48
V F Y AQ DELT+++GD++T I GWWEG L R
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR 49
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 112
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 200
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQ--SGGWWEGLLVRER 48
V F Y AQ DELT+++GD++T I GWWEG L R
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR 48
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P +
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD 69
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P +
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD 69
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQ--SGGWWEGLLVRER 48
V F Y AQ DELT+++GD++T I GWWEG L R
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR 55
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 54.7 bits (130), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 109
G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
Score = 54.7 bits (130), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 197
G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQ--SGGWWEGLLVRER 48
GSS V F Y AQ DELT+++GD++T I GWWEG L R
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR 53
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
R F++ N DEL DVI V E GWW G L RTG FPSN+V E+ A
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
R F++ N DEL DVI V E GWW G L RTG FPSN+V E+ A
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 10 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+F++ DEL+ KGD+I RV+ GGWWEG L
Sbjct: 14 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTL 48
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 54.3 bits (129), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+ +
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
Score = 54.3 bits (129), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+ +
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
Score = 30.8 bits (68), Expect = 0.68, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+ + QE ++L +R GD+IT + + WW+G
Sbjct: 14 YKFVPQENEDLEMRPGDIITLLEDSNEDWWKG 45
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 54.3 bits (129), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
++EA VEFDY AQ DELT+ G++IT IR + GGWWEG
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEG 39
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 111
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 199
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLF 63
+ Y Q DEL LR GD++ + GW+ G R +Q T PG + L+
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGT-FPGNYVKPLY 64
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFS 64
I A +DY A DE++ D+IT I + GWW G+ C+ +
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV---------------CKGRYG 62
Query: 65 YTPANADEL 73
PAN EL
Sbjct: 63 LFPANYVEL 71
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAES 120
F++ N DEL + D+I V E GWW G L RTG FPSN+V EI + + S
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPS 74
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAES 208
F++ N DEL + D+I V E GWW G L RTG FPSN+V EI + + S
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPS 74
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
F++ DEL++ KGD+I RV+ GGWWEG L
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL 50
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 2 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
SV+ A +F++ DEL+ KGD+I RV+ GGWWEG
Sbjct: 4 GSVVRA--KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG 42
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFS 64
I A +DY A DE++ D+IT I + GWW G+ C+ +
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV---------------CKGRYG 54
Query: 65 YTPANADEL 73
PAN EL
Sbjct: 55 LFPANYVEL 63
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 111
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 199
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 31.2 bits (69), Expect = 0.47, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
+ Y Q DEL LR GD++ + GW+ G R +Q
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQ 51
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 10 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+F++ DEL+ KGD+I RV+ GGWWEG
Sbjct: 12 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG 44
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 50.8 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
Score = 50.8 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
Score = 35.4 bits (80), Expect = 0.029, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFS 64
I A +DY A DE++ D+IT I + GWW G+ C+ +
Sbjct: 11 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV---------------CKGRYG 55
Query: 65 YTPANADEL 73
PAN EL
Sbjct: 56 LFPANYVEL 64
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 50.8 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 105
R ++QP CR L+ + P N EL D+I + ++++E W+ G L ++G FP
Sbjct: 3 RRASVGSDQPC--CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPI 60
Query: 106 NFVE 109
N+VE
Sbjct: 61 NYVE 64
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
CR L+ + P N EL D+I + ++++E W+ G L ++G FP N+VE
Sbjct: 14 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ + EL ++GD+IT W+EG+L
Sbjct: 18 YDFEPENEGELGFKEGDIITLTNQIDENWYEGML 51
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS ++ +F++ DEL+ KGD+I RV+ GGWWEG
Sbjct: 4 GSQLV-VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG 44
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 50.4 bits (119), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE
Sbjct: 7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
Score = 50.4 bits (119), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE
Sbjct: 7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ + EL ++GD+IT W+EG+L
Sbjct: 14 YDFEPENEGELGFKEGDIITLTNQIDENWYEGML 47
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 50.4 bits (119), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
L+ + +EL+ V D I +L+ +E+GW G L+ RTG+FP FV+ PA
Sbjct: 19 LYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA 70
Score = 50.4 bits (119), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
L+ + +EL+ V D I +L+ +E+GW G L+ RTG+FP FV+ PA
Sbjct: 19 LYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA 70
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 59 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
C+V ++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 147 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
C+V ++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DYTAQ DEL KG +I + + WW+G
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPDWWKG 40
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
FD+ QE+ EL ++GD+IT I WWEG L R
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR 46
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMT 117
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE++ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPH 187
Query: 118 AESRHRKESNNNEADPAKALA----------ATIEPGRRCRVLFSY-------------T 154
+ +R ++ +PA A A + PG L S
Sbjct: 188 GKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRV 247
Query: 155 PANADE--LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
P D+ L L V D++ V G W G + R G+FP V+
Sbjct: 248 PCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMT 205
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE+ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK-----LV 182
Query: 206 AESRHRKESNNN 217
S H K N N
Sbjct: 183 RSSPHGKHGNRN 194
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
FD+ QE+ EL ++GD+IT I WWEG L R
Sbjct: 11 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR 48
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
FD+ QE+ EL ++GD+IT I WWEG L R
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR 46
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
R L+++ P DEL + D+I + + WW+G + RTG+ PSN+V E
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAE 68
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
R L+++ P DEL + D+I + + WW+G + RTG+ PSN+V E
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAE 68
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMT 117
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE++ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPH 187
Query: 118 AESRHRKESNNNEADPAKALA----------ATIEPGRRCRVLFSY-------------T 154
+ +R ++ +PA A A + PG L S
Sbjct: 188 GKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRV 247
Query: 155 PANADE--LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
P D+ L L V D++ V G W G + R G+FP V+
Sbjct: 248 PCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMT 205
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE+ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK-----LV 182
Query: 206 AESRHRKESNNN 217
S H K N N
Sbjct: 183 RSSPHGKHGNRN 194
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ + EL ++GD+IT W+EG++
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMI 43
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSY 65
+DYTAQ DEL L GD++ I GWW E+ G+R V SY
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDGWW----------TVERNGQRGFVPGSY 59
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 38 GWWEGLLVR------ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGW 91
GW+ V+ ER P + ++ Y N DEL +I+V+++ + W
Sbjct: 10 GWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDW 69
Query: 92 WRGRLRDRTGVFPSNFVE 109
W+G + TG+FPSN+V+
Sbjct: 70 WQGEINGVTGLFPSNYVK 87
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 147 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
C+V ++ Y N DEL +I+V+++ + WW+G + TG+FPSN+V+
Sbjct: 35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
V + +DY A DEL+ KG LI + WW+G
Sbjct: 34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG 72
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 47.8 bits (112), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
Score = 47.8 bits (112), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAETM 116
+ + + + EL L D+I +L++ ++GWWRG + R G FPSN+VEE +E +
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYL 66
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAETM 204
+ + + + EL L D+I +L++ ++GWWRG + R G FPSN+VEE +E +
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYL 66
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEG 42
A +D+ A++ EL+L++GD+I I + G GWW G
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIK-ILNKKGQQGWWRG 44
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 41 EGLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT 100
+ + +R+ + V +QP + LF + P EL D I V+ + WW+G +T
Sbjct: 144 QQIFLRDIEQVPQQP-TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQT 202
Query: 101 GVFPSNFVEEI 111
G+FP N+V +
Sbjct: 203 GMFPRNYVTPV 213
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 63 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP--------- 112
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIP 66
Query: 113 ---AETMTAESRH 122
AE M ++ RH
Sbjct: 67 RAKAEEMLSKQRH 79
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 151 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP--------- 200
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIP 66
Query: 201 ---AETMTAESRH 210
AE M ++ RH
Sbjct: 67 RAKAEEMLSKQRH 79
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
FD+ QE EL R+GD I + WW+G
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 196
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 47.8 bits (112), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 111
R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 11 RAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
Score = 47.8 bits (112), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 199
R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 11 RAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
GSS + Y Q DEL LR+GD + ++ GW+ G+ R ++
Sbjct: 4 GSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQK 52
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
R+ R ++ + A +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
R+ R ++ + A +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+D+ A E +ELT + G++IT + WW+G
Sbjct: 24 YDFEAAEDNELTFKAGEIITVLDDSDPNWWKG 55
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 141 IEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
++ G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
+ G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 47.0 bits (110), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
Score = 47.0 bits (110), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 59 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
C+V ++ Y N DEL +I+V+++ + WW+G + TG+FPSN+V+
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 71
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 147 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
C+V ++ Y N DEL +I+V+++ + WW+G + TG+FPSN+V+
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 71
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY A DEL+ KG LI + WW+G
Sbjct: 25 YDYAANNEDELSFSKGQLINVMNKDDPDWWQG 56
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 6 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 60
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 6 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 60
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 3 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
SV A +D+ A E DEL R G+++ + + WW G L
Sbjct: 4 SVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL 45
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 4 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 4 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
A +D+ A E DEL R G+++ + + WW G L
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL 43
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ A E DEL R G+++ + + WW G L
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL 41
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P E
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P E
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
A ++FD+ AQ ELTL+KGD++ + W EG
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG 39
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
+QP C+ L+ + P N EL D+I + ++++E W+ G L ++G FP ++V+
Sbjct: 12 DQPS--CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
C+ L+ + P N EL D+I + ++++E W+ G L ++G FP ++V+
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ + EL R+GDLIT W+EG L
Sbjct: 20 YDFEPENDGELGFREGDLITLTNQIDENWYEGXL 53
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+D+ A E +ELT + G+LIT + WW+G
Sbjct: 12 YDFEAVEDNELTFKHGELITVLDDSDANWWQG 43
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR 185
S+ + DP A + +E + ++ YT DEL +I V+ + ++GW+ G +
Sbjct: 2 SSGSSGDPPWAPRSYLE---KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN 58
Query: 186 DRTGVFPSNFVEEI 199
TG+FP N+VE I
Sbjct: 59 GVTGLFPGNYVESI 72
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
++ YT DEL +I V+ + ++GW+ G + TG+FP N+VE I
Sbjct: 23 IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
Score = 35.0 bits (79), Expect = 0.037, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+DYT + DEL+ ++G +I I+ GW+EG++
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 57
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 57
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
+D+ A E DEL R G+++ + + WW G L
Sbjct: 9 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL 42
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GSS A D+ + DEL RK D+IT I + W G L
Sbjct: 4 GSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL 47
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAET 115
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI ET
Sbjct: 6 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAET 203
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI ET
Sbjct: 6 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 35.4 bits (80), Expect = 0.030, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRER 48
+++ VE+DY A DELT+R G++I + ++Q GW EG L R
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR 46
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 109 EEIPAETMTAESRHRK-ESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVND 167
E++P R RK +S + + + +AA R LF +T + EL D
Sbjct: 143 EQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAP-----RAEALFDFTGNSKLELNFKAGD 197
Query: 168 VIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
VI +LS + + W G +R TG+FP +FV+
Sbjct: 198 VIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
I+ +DY AQ DELT ++GD I + GWWEG L +R
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR 47
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 3 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 3 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
GS I+ +DY AQ DELT ++GD I + GWWEG L +R
Sbjct: 1 GSPGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR 48
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 111
G+ R ++ Y A+ADE+ D I + ++EGW G ++ RTG+ P+N+VE I
Sbjct: 3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 199
G+ R ++ Y A+ADE+ D I + ++EGW G ++ RTG+ P+N+VE I
Sbjct: 3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
Score = 33.1 bits (74), Expect = 0.13, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR 46
+DY A +ADE++ + GD I ++ GW G + R
Sbjct: 10 YDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQR 45
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVF 103
ER QP L+S+ +L D I V+S+ + WW G+LR +TG+F
Sbjct: 8 HERVGNLNQP-IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66
Query: 104 PSNFV 108
P+N+V
Sbjct: 67 PANYV 71
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNFV 196
L+S+ +L D I V+S+ + WW G+LR +TG+FP+N+V
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 132 DPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVF 191
DP + L P V F+Y DEL L + V+ + +GWWRG + G F
Sbjct: 8 DPGERLYDLNMP---AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWF 64
Query: 192 PSNFVEE 198
PSN+V E
Sbjct: 65 PSNYVTE 71
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 22 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 71
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+ A V+F+Y A+ DEL+L KG + + S GWW G
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG 55
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 43.9 bits (102), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
Score = 43.9 bits (102), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 43.9 bits (102), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
G+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE
Sbjct: 7 GKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
Score = 43.9 bits (102), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
G+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE
Sbjct: 7 GKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GSS A ++FD+ AQ ELTL+KGD++ + W EG
Sbjct: 4 GSSGKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG 45
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLE 54
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLE 54
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
I A V+F Y A+ DEL+L KG +T + S GWW G
Sbjct: 1 IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRG 38
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ L+S+ + +L DVI +L S+ + WW GR+ R G+FP+N+VE +
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ L+S+ + +L DVI +L S+ + WW GR+ R G+FP+N+VE +
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 51 VTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
+ + R+ R L+ + +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 12 LNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
R+ R L+ + +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 18 RKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+D+ A E +ELT + G++I + WW+G
Sbjct: 24 YDFEAVEDNELTFKHGEIIIVLDDSDANWWKG 55
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEI 111
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 56
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEI 199
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 56
Score = 35.8 bits (81), Expect = 0.020, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRER 48
VE+DY A DELT+R G++I + ++Q GW EG L R
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR 45
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGRL-RDRTGVFP 192
T G +F Y A +EL L D + VLS+ +EGWW G+L R GVFP
Sbjct: 24 GTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFP 83
Query: 193 SNFV 196
SN+V
Sbjct: 84 SNYV 87
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 62 LFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGRL-RDRTGVFPSNFV 108
+F Y A +EL L D + VLS+ +EGWW G+L R GVFPSN+V
Sbjct: 35 VFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 58
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 58
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS + A V+F+Y A+ DEL+L KG + + S GWW G
Sbjct: 1 GSLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG 42
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1 GSSVIEASVE--FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS +++V+ FDY AQ DELT K +I + Q GGWW G
Sbjct: 1 GSPTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRG 44
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 111
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 199
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
FD+ QE EL R+GD I + WW+G
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIPAETMT 205
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++P+
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS---- 64
Query: 206 AESRHRKESNNNEA--DPAKALTATIG 230
S + K + +A P +L+AT G
Sbjct: 65 --SENEKAVSPKKALLPPTVSLSATSG 89
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIPAETMT 117
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++P+
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS---- 64
Query: 118 AESRHRKESNNNEA--DPAKALAATIEP 143
S + K + +A P +L+AT P
Sbjct: 65 --SENEKAVSPKKALLPPTVSLSATSGP 90
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 55
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 55
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
FD+ QE EL R+GD I + WW+G
Sbjct: 7 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 38
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
GR R F + EL L D++ + ++++ W+ G R G+FP ++E
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
GR R F + EL L D++ + ++++ W+ G R G+FP ++E
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 35.0 bits (79), Expect = 0.036, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GSS A +FD+ AQ EL L+KGD++ + W+EG
Sbjct: 4 GSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG 45
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS+ ++A FD+ QE EL R+GD I + WW+G
Sbjct: 1 GSTYVQAL--FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS+ ++A FD+ QE EL R+GD I + WW+G
Sbjct: 1 GSTYVQAL--FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPAETMTAE 119
L+ YT +DEL +H D+I V + E WW G + + + G FP+N + +ET+ E
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPAN---HVASETLYQE 67
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPAETMTAE 207
L+ YT +DEL +H D+I V + E WW G + + + G FP+N + +ET+ E
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPAN---HVASETLYQE 67
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DYTA +DELT+ +GD+I + WW G
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFFKDNEDWWYG 44
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
V F+Y DEL L + V +GWWRG + G FPSN+V E
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLE 55
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
V F+Y DEL L + V +GWWRG + G FPSN+V E
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLE 55
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
I A V F Y A+ DEL+L G +T S GWW G
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRG 39
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR--TGVFPSNFVEEI 111
G+R R ++ Y+ A+ DE+ D I + ++++GW G + TG+ P+N+VE I
Sbjct: 3 GKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR--TGVFPSNFVEEI 199
G+R R ++ Y+ A+ DE+ D I + ++++GW G + TG+ P+N+VE I
Sbjct: 3 GKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
Score = 30.8 bits (68), Expect = 0.75, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR 46
+DY+A + DE++ + GD I ++ GW G + R
Sbjct: 10 YDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVER 45
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 56 GRRCRVLFSYTP----ANAD---ELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNF 107
GRR L+ Y P N D EL D+I V E++E G++ G L + G+ PSNF
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 108 VEEI 111
+EE+
Sbjct: 67 LEEV 70
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 144 GRRCRVLFSYTP----ANAD---ELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNF 195
GRR L+ Y P N D EL D+I V E++E G++ G L + G+ PSNF
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 196 VEEI 199
+EE+
Sbjct: 67 LEEV 70
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEE 110
+++ + EL L DV+ + S + ++GWW+G R G FPS +VEE
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEE 198
+++ + EL L DV+ + S + ++GWW+G R G FPS +VEE
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEG 42
A +++ A++ EL+LR+GD++ G GWW+G
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKG 47
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG---RLRDRTGVFPSNFV 108
++Y ADEL L + D + +L E EGW+RG R + + G+FP++++
Sbjct: 17 FYNYDARGADELSLQIGDTVHIL-ETYEGWYRGYTLRKKSKKGIFPASYI 65
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG---RLRDRTGVFPSNFV 196
++Y ADEL L + D + +L E EGW+RG R + + G+FP++++
Sbjct: 17 FYNYDARGADELSLQIGDTVHIL-ETYEGWYRGYTLRKKSKKGIFPASYI 65
Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRER 48
++Y A+ ADEL+L+ GD + + GW+ G +R++
Sbjct: 18 YNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKK 54
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
FDY AQ DELT K +I + Q GGWW G
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVEKQDGGWWRG 41
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 111
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 199
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 1 GSSVIEASVE--FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GS + +V+ FDY AQ DELT K +I + Q GGWW G
Sbjct: 1 GSPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRG 44
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 PGRRCRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 111
P +C V LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 143 PGRRCRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 199
P +C V LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRD-RTGVFPSNFVEEI 111
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRD-RTGVFPSNFVEEI 199
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLL 44
+DY QE DEL+ + GD +T + GW G L
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRL 44
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
GSS +DY A+ +DELT +G LI + + GGWW+G
Sbjct: 4 GSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKG 45
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-TGVFPSNFVEEI 111
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-TGVFPSNFVEEI 199
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V E
Sbjct: 2 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 56
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V E
Sbjct: 2 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 56
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 8 LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 8 LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V E
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V E
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFV 108
L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V
Sbjct: 13 LHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFV 196
L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V
Sbjct: 13 LHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGV 102
+ + YT + DEL+L DV+ V+ E +EGW G +L GV
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 103 FPSNFVEEIP 112
FP NF E +P
Sbjct: 204 FPENFTERVP 213
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGV 190
+ + YT + DEL+L DV+ V+ E +EGW G +L GV
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 191 FPSNFVEEIP 200
FP NF E +P
Sbjct: 204 FPENFTERVP 213
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GWWEGLLVRERQAVTEQPGRR 58
+ + + DYTA + DEL L+ GD++ I Q+ GW G V+E + +
Sbjct: 142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG--VKESDWNQHKKLEK 199
Query: 59 CRVLF 63
CR +F
Sbjct: 200 CRGVF 204
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 131 ADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 190
A PA A A ++ + L+ + + L + NDVI VL E ++ WW G ++ + G
Sbjct: 3 AQPAMAQGALLQ----AQALYPWRAKKDNHLNFNKNDVITVL-EQQDMWWFGEVQGQKGW 57
Query: 191 FPSNFVEEIPA 201
FP ++V+ I A
Sbjct: 58 FPKSYVKLISA 68
Score = 36.6 bits (83), Expect = 0.012, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
+ + L+ + + L + NDVI VL E ++ WW G ++ + G FP ++V+ I A
Sbjct: 14 QAQALYPWRAKKDNHLNFNKNDVITVL-EQQDMWWFGEVQGQKGWFPKSYVKLISA 68
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 58 RCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
R RV +TP+ + D L+L D+ID++S+ G W G L ++ G F +V+
Sbjct: 11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVD 64
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 146 RCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
R RV +TP+ + D L+L D+ID++S+ G W G L ++ G F +V+
Sbjct: 11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVD 64
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 7 ASVEFDYTAQ--EADELTLRKGDLITGIRVQSGGWWEGLL 44
A V D+T + D L L+KGD+I I G W GLL
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL 51
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI-----PA 113
R LF + + ++L D++ + + EE WW D + G+ P +VE+
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPSSASV 64
Query: 114 ETMTA---ESRHRKESNNNEADP-AKALAATIEPGRR-----CRVLFSYTPANADE--LE 162
T+T +S H + E P A+ T P + RV+ P D+ L
Sbjct: 65 STLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDKTALA 124
Query: 163 LHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
L V +++ V G W G + G FP V
Sbjct: 125 LEVGELVKVTKINMSGQWEGECNGKRGHFPFTHV 158
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 64 SYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESR 121
SY N L H D+I +L + +E GW G R+G+FP++ V+ A +
Sbjct: 16 SYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKE 75
Query: 122 HRKESNNNEA 131
R S +
Sbjct: 76 QRSGSGPSSG 85
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 152 SYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESR 209
SY N L H D+I +L + +E GW G R+G+FP++ V+ A +
Sbjct: 16 SYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKE 75
Query: 210 HRKESNNNEA 219
R S +
Sbjct: 76 QRSGSGPSSG 85
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 141 IEPGRRCRVL--FSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------R 183
+ PG +V YT + DEL+L DV+ V+ E +EGW G +
Sbjct: 5 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKK 64
Query: 184 LRDRTGVFPSNFVEEIP 200
L GVFP NF E +P
Sbjct: 65 LEKCRGVFPENFTERVP 81
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 64 SYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGVFPSNFV 108
YT + DEL+L DV+ V+ E +EGW G +L GVFP NF
Sbjct: 18 DYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFT 77
Query: 109 EEIP 112
E +P
Sbjct: 78 ERVP 81
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GWWEGLLVRERQAVTEQPGRR 58
+ + + DYTA + DEL L+ GD++ I Q+ GW G V+E + +
Sbjct: 10 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG--VKESDWNQHKKLEK 67
Query: 59 CRVLF 63
CR +F
Sbjct: 68 CRGVF 72
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 34.3 bits (77), Expect = 0.056, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + DE+T++KGD++T + + WW+ + V +RQ
Sbjct: 8 YDYQEKSPDEVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 46
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVE 109
R+ RVL+ Y AN+ EL L ++VI V S V + W G ++ G P ++E
Sbjct: 18 RKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVE 197
R+ RVL+ Y AN+ EL L ++VI V S V + W G ++ G P ++E
Sbjct: 18 RKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 34.3 bits (77), Expect = 0.064, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + DE+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPDEVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI-PAETMTAES 120
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ PA++ + E+
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASREN 70
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI-PAETMTAES 208
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ PA++ + E+
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASREN 70
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 50
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 108
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 196
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 36 LWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 36 LWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 62 LFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFV 108
L+++ +L DVI +L S+ + WW GR + G+FP+N+V
Sbjct: 9 LYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 150 LFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFV 196
L+++ +L DVI +L S+ + WW GR + G+FP+N+V
Sbjct: 9 LYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS VEE+ +
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS VEE+ +
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVE 109
R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++E
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVE 197
R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++E
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR 46
+DY+AQ+ DE++ R GD I ++ GW G + R
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQR 48
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 23/172 (13%)
Query: 42 GLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RT 100
G+++R+ +A R LF + + ++L D++ + + EE WW + +
Sbjct: 126 GVILRQEEA------EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 101 GVFPSNFVEEI-PAETMTA-------ESRHRKESNNNEADP-AKALAATIEPGRR----- 146
G+ P +VE+ PA + E H + E P A+ T P +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 147 CRVLFSYTPANADE--LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
RV+ P D+ L L V +++ V G W G + G FP V
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 291
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 137 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 189
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ A
Sbjct: 23 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ A
Sbjct: 23 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVT 52
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQGFV 64
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
+ + L S+T + L +D+I VL E +E WW G + G FP ++V+ IP
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKIIPG 66
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
+ + L S+T + L +D+I VL E +E WW G + G FP ++V+ IP
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKIIPG 66
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 108
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 11 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 196
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 11 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 72 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
EL DVI VL + WW G++ D G FP++FV
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
EL DVI VL + WW G++ D G FP++FV
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 112
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 200
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKL 61
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKL 61
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
V +DY + ELT++KGD++T + + WW+ + V +RQ
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV---------FPSNFVEE 110
LF Y A++L D + VL EGWW R ++ G PSN+V E
Sbjct: 13 LFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV---------FPSNFVEE 198
LF Y A++L D + VL EGWW R ++ G PSN+V E
Sbjct: 13 LFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWW 40
FDY A+ A++L+ R GD + + GWW
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEGWW 43
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 112
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 200
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSN 106
G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN 60
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSN 194
G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN 60
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRV---QSGGWWEGLLVRERQAVTEQPGR 57
GSS + A +D +DEL +GD++T + +S GWW+ LL RQ + P
Sbjct: 4 GSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL-HGRQGLA--PAN 60
Query: 58 RCRVL 62
R ++L
Sbjct: 61 RLQIL 65
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras Gtpase-
Activating Protein 1
Length = 71
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 56 GRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 111
GRR R + YT + DE+ D+ V +E+E+GW W LR D G+ + VEE+
Sbjct: 7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 144 GRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 199
GRR R + YT + DE+ D+ V +E+E+GW W LR D G+ + VEE+
Sbjct: 7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
F+YT A EL DV+ + WWRG G+ P ++ +PA T
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI-TLPAGT 68
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
F+YT A EL DV+ + WWRG G+ P ++ +PA T
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI-TLPAGT 68
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
F YT + A EL+ R+GD++ S WW G
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRG 48
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 36.2 bits (82), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVID-VLSEVEEGWWRGRLRDRTGVFPSNFVE 109
P R+ + L++ + EL V D V E GW G L +TG+ P N+VE
Sbjct: 9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
Score = 36.2 bits (82), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVID-VLSEVEEGWWRGRLRDRTGVFPSNFVE 197
P R+ + L++ + EL V D V E GW G L +TG+ P N+VE
Sbjct: 9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFVE 109
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V+
Sbjct: 7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFVE 197
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V+
Sbjct: 7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL 44
GSS A V Y A +++L+L G LI ++ + GWW+G L
Sbjct: 4 GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGEL 47
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
L+ + + EL DVI+V WW GR+ D G FP++FV
Sbjct: 73 LWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
L+ + + EL DVI+V WW GR+ D G FP++FV
Sbjct: 73 LWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQS---GGWWEGLLVRERQAVTEQPGRRCRVL 62
A +D A+ DEL+ RKGD++T + + GWW L RQ + PG R ++L
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL-HGRQGIV--PGNRLKIL 61
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSN 106
+ L+ + DEL D++ VL + +G WW L R G+ P N
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSN 194
+ L+ + DEL D++ VL + +G WW L R G+ P N
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
V +DY + ELT++KGD++T + + WW+ + V +RQ
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK-IEVNDRQG 51
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 119
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 67
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 207
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 67
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCR 60
G+ V +DY A+ D+L+ KG+ + G WWE R T + G
Sbjct: 1 GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA-----RSLTTGETG---- 51
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL 96
Y P+N V V S E W+ G+L
Sbjct: 52 ----YIPSNY---------VAPVDSIQAEEWYFGKL 74
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 119
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 66
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 207
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 66
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPANA 70
+DY A+ D+L+ KG+ + G WWE R T + G Y P+N
Sbjct: 10 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEA-----RSLTTGETG--------YIPSNY 56
Query: 71 DELELHVNDVIDVLSEVEEGWWRGRL 96
V V S E W+ G+L
Sbjct: 57 ---------VAPVDSIQAEEWYFGKL 73
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEIPAE 114
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+ E
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNMRTGARGVFPAYYAIEVTKE 66
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEIPAE 202
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+ E
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNMRTGARGVFPAYYAIEVTKE 66
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 35.8 bits (81), Expect = 0.022, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+++V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKL 61
Score = 35.8 bits (81), Expect = 0.022, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+++V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKL 61
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI 111
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNXRTGARGVFPAYYAIEV 60
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI 199
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNXRTGARGVFPAYYAIEV 60
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 35.8 bits (81), Expect = 0.023, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPV 62
Score = 35.8 bits (81), Expect = 0.023, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPV 62
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 119
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 68
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 207
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 68
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A+ D+L+ KG+ + G WWE
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILNSSEGDWWE 42
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKL 61
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKL 61
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 50
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
G+ ++L+ +T NA+EL + ++V++VL + + WW+ R R + G P N + E
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCNILGE 61
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
G+ ++L+ +T NA+EL + ++V++VL + + WW+ R R + G P N + E
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCNILGE 61
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPGEVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 119
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 66
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTAE 207
L+ Y D+L H + +L+ E WW R TG PSN+V P +++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 66
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A+ D+L+ KG+ + G WWE
Sbjct: 10 YDYEARTEDDLSFHKGEKFQILNSSEGDWWE 40
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 141 IEPGRRCRVL--FSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------R 183
+ PG +V YT + DEL+L DV+ V+ E +EGW G
Sbjct: 39 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKE 98
Query: 184 LRDRTGVFPSNFVEEI 199
L GVFP NF E +
Sbjct: 99 LEKCRGVFPENFTERV 114
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGV 102
+ + YT + DEL+L DV+ V+ E +EGW G L GV
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105
Query: 103 FPSNFVEEI 111
FP NF E +
Sbjct: 106 FPENFTERV 114
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GWWEGLLVRERQAVTEQPGRR 58
+ + + DYTA + DEL L+ GD++ I Q+ GW G V+E + +
Sbjct: 44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG--VKESDWNQHKELEK 101
Query: 59 CRVLF 63
CR +F
Sbjct: 102 CRGVF 106
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 35.0 bits (79), Expect = 0.032, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 35.0 bits (79), Expect = 0.032, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
V +DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK-IEVNDRQG 51
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 35.0 bits (79), Expect = 0.033, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 35.0 bits (79), Expect = 0.033, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 30.8 bits (68), Expect = 0.60, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 8 YDYQEKGDSEVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 46
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 97
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 53 EQPGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVE-EGWWRGRLRDRTGVF 103
E P R LF Y P A +EL +I V + + +G++RG R G+
Sbjct: 14 ELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLI 73
Query: 104 PSNFVEEIPAE 114
P N V EI A+
Sbjct: 74 PCNMVSEIQAD 84
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 143 PGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVE-EGWWRGRLRDRTGVFPS 193
P R LF Y P A +EL +I V + + +G++RG R G+ P
Sbjct: 16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPC 75
Query: 194 NFVEEIPAE 202
N V EI A+
Sbjct: 76 NMVSEIQAD 84
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 35.0 bits (79), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
IEA +FDY + A EL+ +KG + + S WWEG
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG 47
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 35.0 bits (79), Expect = 0.037, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 35.0 bits (79), Expect = 0.037, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 31.2 bits (69), Expect = 0.51, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPAEVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 34.7 bits (78), Expect = 0.043, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKL 61
Score = 34.7 bits (78), Expect = 0.043, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKL 61
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVNDRQG 51
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 34.7 bits (78), Expect = 0.044, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKL 61
Score = 34.7 bits (78), Expect = 0.044, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKL 61
Score = 30.8 bits (68), Expect = 0.71, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
V +DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWK-VEVDDRQG 51
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVE-----EGWWRGR--LRDRTGVFPSNFV 108
+V++ YTP N DELEL D I +S +E EGW G +G+ P N++
Sbjct: 20 QVIYPYTPQNDDELELVPGDFI-FMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVE-----EGWWRGR--LRDRTGVFPSNFV 196
+V++ YTP N DELEL D I +S +E EGW G +G+ P N++
Sbjct: 20 QVIYPYTPQNDDELELVPGDFI-FMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 34.7 bits (78), Expect = 0.049, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L+ Y+ +L + I ++++ + WW G + DR+G+FPSN+V+
Sbjct: 14 LYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYVK 60
Score = 34.7 bits (78), Expect = 0.049, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L+ Y+ +L + I ++++ + WW G + DR+G+FPSN+V+
Sbjct: 14 LYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYVK 60
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 34.3 bits (77), Expect = 0.060, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61
Score = 34.3 bits (77), Expect = 0.060, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVADRQG 51
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 64 SYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEI 111
++ ADE+ L DV+ VL + E+GW G RLRD TG FP +F I
Sbjct: 25 AFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI 73
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 152 SYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEI 199
++ ADE+ L DV+ VL + E+GW G RLRD TG FP +F I
Sbjct: 25 AFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI 73
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 33.9 bits (76), Expect = 0.072, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61
Score = 33.9 bits (76), Expect = 0.072, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQA 50
+DY + E+T++KGD++T + + WW+ + V +RQ
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVGDRQG 51
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
G+ V +DY A D+L+ KG+ + G WWE
Sbjct: 12 GTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWE 52
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 33.9 bits (76), Expect = 0.083, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 68 ANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 11 AGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 58
Score = 33.9 bits (76), Expect = 0.083, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 156 ANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 11 AGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 58
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 33.9 bits (76), Expect = 0.086, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP 112
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 16 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 66
Score = 33.9 bits (76), Expect = 0.086, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 151 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP 200
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 16 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 66
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 6 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 6 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A D+L+ KG+ + G WWE
Sbjct: 7 YDYEAITEDDLSFHKGEKFQILNSSEGDWWE 37
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
VL+ Y + EL + D++ +L+ + WW+ + R G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + EL + D++ +L+ + WW+ + R G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
Score = 32.0 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
V +DY + ELT++KGD++T + + WW+
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK 43
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
G+ V +DY A D+L+ KG+ + G WWE
Sbjct: 12 GTGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWE 52
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
G+ V +DY A+ D+L+ KG+ + G WWE
Sbjct: 2 GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWE 42
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
G+ V +DY A+ D+L+ KG+ + G WWE
Sbjct: 1 GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWE 41
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 6 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 6 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A+ D+L+ KG+ + G WWE
Sbjct: 7 YDYEARTEDDLSFHKGEKFQILNSSEGDWWE 37
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
V+ +Y EL L +V+DV+ + E GWW + G P+ ++E
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
V+ +Y EL L +V+DV+ + E GWW + G P+ ++E
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 12 DYTAQEADELTLRKGDLITGIRVQSGGWW 40
D+TAQ+ +LT +KG+++ I + GWW
Sbjct: 18 DFTAQQVGDLTFKKGEILLVIEKKPDGWW 46
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE 47
A+ E+DY A E +ELT + D I I WW G L ++
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKD 47
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 108
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 11 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 196
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 11 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 GRRCRVLFSYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVE 109
G RCR L+ ++ + L ++I +L + GWW G D G FP+++V+
Sbjct: 3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 144 GRRCRVLFSYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVE 197
G RCR L+ ++ + L ++I +L + GWW G D G FP+++V+
Sbjct: 3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 21 LTLRKGDLITGIRVQSGGWWEG 42
L G+LIT ++V GGWWEG
Sbjct: 21 LRFAAGELITLLQVPDGGWWEG 42
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY A+ D+L+ KG+ + G WWE
Sbjct: 8 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEA 39
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEE 110
++++ P ADE+ + D+I V +G+ +G R RTG++PS V E
Sbjct: 448 IYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEE 198
++++ P ADE+ + D+I V +G+ +G R RTG++PS V E
Sbjct: 448 IYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY A+ D+L+ KG+ + G WWE
Sbjct: 8 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEA 39
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKL 61
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKL 61
Score = 30.4 bits (67), Expect = 0.95, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 43
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 48
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 48
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE 47
A+ E+DY A E +ELT + D I I WW G L ++
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKD 43
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 108
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 196
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE 47
A+ E+DY A E +ELT + D I I WW G L ++
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKD 44
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 108
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 8 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 196
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 8 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 60
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 197
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 60
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 57
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 197
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 57
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
Length = 65
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 57 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 111
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 63
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 145 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 199
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 63
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 50
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 50
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A D+L+ KG+ + G WWE
Sbjct: 8 YDYEAWTEDDLSFHKGEKFQILNSSEGDWWE 38
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 57 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 111
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 3 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 60
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 145 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 199
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 3 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 60
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 32.3 bits (72), Expect = 0.21, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKL 56
Score = 32.3 bits (72), Expect = 0.21, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKL 56
Score = 30.8 bits (68), Expect = 0.75, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 38
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDV-LSEVEEGWWRGRLRDRTGVFPSNFVE 197
E + R L Y ++ L ND+I + + E W+ G+L + G FP + VE
Sbjct: 8 EFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDV-LSEVEEGWWRGRLRDRTGVFPSNFVE 109
+ R L Y ++ L ND+I + + E W+ G+L + G FP + VE
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 84
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 197
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 84
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 111
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 199
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 111
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 199
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 6 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
EA +F++ E++ RKG+ IT +R W+EG
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEG 44
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 71 DELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVE 109
DEL D++ VL+E ++ W++ L + G P N++E
Sbjct: 15 DELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 159 DELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVE 197
DEL D++ VL+E ++ W++ L + G P N++E
Sbjct: 15 DELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 71 DELELHVNDVIDVL-SEVEEGWWRGRLRDRT---GVFPSNFVEEI 111
D+L + +NDVI V+ E WWRG+ RT G FP N V +
Sbjct: 291 DKLHIQMNDVITVIEGRAENYWWRGQ-NTRTLCVGPFPRNVVTSV 334
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 159 DELELHVNDVIDVL-SEVEEGWWRGRLRDRT---GVFPSNFVEEI 199
D+L + +NDVI V+ E WWRG+ RT G FP N V +
Sbjct: 291 DKLHIQMNDVITVIEGRAENYWWRGQ-NTRTLCVGPFPRNVVTSV 334
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 111
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 14 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 199
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 14 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 6 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
EA +F++ E++ RKG+ IT +R W+EG
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEG 45
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
A +FDY + A EL+ +KG + S WWEG
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEG 44
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 31.2 bits (69), Expect = 0.56, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 72 ELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 111
E+ N+++ V S++E WW+ R + TG+ PSN+V+ I
Sbjct: 23 EISFEQNEILQV-SDIEGRWWKARRANGETGIIPSNYVQLI 62
Score = 31.2 bits (69), Expect = 0.56, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 199
E+ N+++ V S++E WW+ R + TG+ PSN+V+ I
Sbjct: 23 EISFEQNEILQV-SDIEGRWWKARRANGETGIIPSNYVQLI 62
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 65 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 109
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 197
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+EA + D++A DEL+ RKG ++ + ++ W
Sbjct: 1 MEAIAKHDFSATADDELSFRKGQILKILNMEDDSNW 36
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 65 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 109
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 197
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 72 ELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVE 109
EL + I ++ +V E W+ GR+ R G+FP+++V+
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVE 197
EL + I ++ +V E W+ GR+ R G+FP+++V+
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 73 LELHVNDVIDVLSEVEEGWWRGRLR------DRTGVFPSNFVEEI 111
L + DVI VL + +G W+G + DR G FP VE +
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 161 LELHVNDVIDVLSEVEEGWWRGRLR------DRTGVFPSNFVEEI 199
L + DVI VL + +G W+G + DR G FP VE +
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 30.8 bits (68), Expect = 0.71, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 38
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 30.8 bits (68), Expect = 0.73, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 110
E+ G L+ Y + D+L + + VL E E WW+ + L + G PSN+V +
Sbjct: 4 EEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVAK 62
Query: 111 I 111
+
Sbjct: 63 L 63
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 30.8 bits (68), Expect = 0.74, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLL 44
+DY QE DEL+ + GD +T + + GW +G L
Sbjct: 435 YDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRL 469
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 30.4 bits (67), Expect = 0.81, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 43
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 69
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 69
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEIPAE 114
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I E
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE 65
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEIPAE 202
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I E
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE 65
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 30.4 bits (67), Expect = 0.91, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+ Y AQ DE+++ GD+IT IR G W
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDDGSGW 36
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRT-GVFPSNFVEEI 111
L+ Y + D+L D + VL E E WW+ R L R G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRT-GVFPSNFVEEI 199
L+ Y + D+L D + VL E E WW+ R L R G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPAN 69
+DY + D+L+ +KGD + + +SG WW+ R T + G Y P+N
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKA-----RSLATRKEG--------YIPSN 54
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 43
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKKL 69
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKKL 69
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE------------ 109
F +T +L + +++LS+ + WW R TG+ P+N+V+
Sbjct: 154 FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSK 213
Query: 110 ----------EIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANAD 159
AE ++ S S+N E P L A + +V F P D
Sbjct: 214 GASQSSIGSSGGGAERFSSAS---TSSDNIELQP--RLPA------KAKVTFDRVPNAYD 262
Query: 160 ELELHVN--DVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
+L V + V ++ G ++ L + G P ++
Sbjct: 263 PTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 134 AKALAATIEPGRRCRV-LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVF 191
A LAA +P V F +T +L + +++LS+ + WW R TG+
Sbjct: 107 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 166
Query: 192 PSNFVE 197
P+N+V+
Sbjct: 167 PANYVQ 172
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
F +T +L + +++LS+ + WW R TG+ P+N+V+
Sbjct: 125 FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY + E+T++KGD++T + + WW+
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 43
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLR-DRTGVFPSNFVE 109
C+V++SY + DEL + ++V++V+ + + E W + R + + G P +++
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLR-DRTGVFPSNFVE 197
C+V++SY + DEL + ++V++V+ + + E W + R + + G P +++
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 13 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 59
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 197
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 13 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 59
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 42 GLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RT 100
G+++R+ +A R LF + + ++L D++ + + EE WW + +
Sbjct: 6 GVILRQEEA------EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 59
Query: 101 GVFPSNFVEE 110
G+ P +VE+
Sbjct: 60 GMIPVPYVEK 69
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 17 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 69
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLV 45
V++D+ A+ DELT++ GD + + +S WW LV
Sbjct: 7 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLV 44
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y + D+L D + VL E E WW+ R + G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y + D+L D + VL E E WW+ R + G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
+DY + D+L+ +KGD + + +SG WW+ + R+
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKARSLATRK 47
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNF 195
A ++ L+ Y D+L H + +L+ E WW R TG PS +
Sbjct: 1 GAMVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPY 60
Query: 196 VEEI 199
+ +
Sbjct: 61 LAPV 64
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 2 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
S++ EA +DY A+ D+L+ KG+ + G WWE
Sbjct: 7 STLFEAL--YDYEARTEDDLSFHKGEKFQILNSSEGDWWE 44
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PS ++ +
Sbjct: 13 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPV 64
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSN 106
E + VT QP YT + DE+ ++V+ + EGWW R + G P++
Sbjct: 8 EEKYVTVQP---------YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPAS 58
Query: 107 FVEE 110
++++
Sbjct: 59 YLKK 62
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 13 YTAQEADELTLRKGDLITGIRVQSGGWW 40
YT+Q DE+ KG + IR GWW
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWW 44
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 153 YTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
YT + DE+ ++V+ + EGWW R + G P++++++
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLV 45
V++D+ A+ DELT++ GD + + +S WW LV
Sbjct: 11 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLV 48
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
S++ EA +DY A+ D+L+ KG+ + G WWE
Sbjct: 5 STLFEAL--YDYEARTEDDLSFHKGEKFQILNSSEGDWWEA 43
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFV 108
Q L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFV 196
L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 42 GLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RT 100
G+++R+ +A R LF + + ++L D++ + + EE WW + +
Sbjct: 128 GVILRQEEA------EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181
Query: 101 GVFPSNFVEE 110
G+ P +VE+
Sbjct: 182 GMIPVPYVEK 191
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 139 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 191
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 73 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L L V D++ V G W G + R G+FP V+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 161 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L L V D++ V G W G + R G+FP V+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 42 GLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RT 100
G+++R+ +A R LF + + ++L D++ + + EE WW + +
Sbjct: 126 GVILRQEEA------EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 101 GVFPSNFVEE 110
G+ P +VE+
Sbjct: 180 GMIPVPYVEK 189
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 137 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 189
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 98
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 7 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTG 66
Query: 99 RTGVFPSNFVEEI 111
G FP +VE I
Sbjct: 67 ERGDFPGTYVEYI 79
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 186
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 7 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTG 66
Query: 187 RTGVFPSNFVEEI 199
G FP +VE I
Sbjct: 67 ERGDFPGTYVEYI 79
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A+ ++L+ +KG+ I G WWE
Sbjct: 12 YDYEARTTEDLSFKKGERFQIINNTEGDWWE 42
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCR 60
GS I +DY A ++L+ +KGD + + +SG WW + R T + G
Sbjct: 6 GSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWW-----KARSLATRKEG---- 55
Query: 61 VLFSYTPAN 69
Y P+N
Sbjct: 56 ----YIPSN 60
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 98
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 99 RTGVFPSNFVEEIPAETMT 117
G FP +VE I + ++
Sbjct: 65 ERGDFPGTYVEYIGRKKIS 83
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 186
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 187 RTGVFPSNFVEEIPAETMT 205
G FP +VE I + ++
Sbjct: 65 ERGDFPGTYVEYIGRKKIS 83
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 73 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L L V D++ V G W G + R G+FP V+
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 161 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L L V D++ V G W G + R G+FP V+
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 98
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 99 RTGVFPSNFVEEI 111
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 186
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 187 RTGVFPSNFVEEI 199
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A+ ++L+ +KG+ I G WWE
Sbjct: 34 YDYEARTTEDLSFKKGERFQIINNTEGDWWE 64
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
GS V +DY A +L+ KG+ + SG WWE
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWE 43
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 98
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 99 RTGVFPSNFVEEI 111
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 186
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 187 RTGVFPSNFVEEI 199
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
GS I +DY A ++L+ +KGD + + +SG WW+ + R+
Sbjct: 22 GSEDIIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRK 69
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 11 FDYTAQEADELTLRKGDLITGIRV----QSGGWWEGL 43
+DY+A+ DEL+ R+G+ +T +R ++ WW L
Sbjct: 161 WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAAL 197
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCR 60
GS I +DY A ++L+ +KGD + + +SG WW + R T + G
Sbjct: 6 GSEDIIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWW-----KARSLATRKEG---- 55
Query: 61 VLFSYTPAN 69
Y P+N
Sbjct: 56 ----YIPSN 60
>pdb|3L57|A Chain A, Crystal Structure Of The Plasmid Pcu1 Trai Relaxase Domain
pdb|3L57|B Chain B, Crystal Structure Of The Plasmid Pcu1 Trai Relaxase Domain
Length = 299
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 45 VRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTG 101
R+ ++VT+ F + + A + +LH + + +++ E+G WR D R
Sbjct: 129 TRQGKSVTQNTNNLVVATFRHETSRALDPDLHTHAFVMNMTQREDGQWRALKNDELMRNK 188
Query: 102 VFPSN-FVEEIPAETMTAESRHRKESNNNEADPA 134
+ + + +E+ E A R S NN D A
Sbjct: 189 MHLGDVYKQELALELTKAGYELRYNSKNNTFDMA 222
>pdb|3L6T|A Chain A, Crystal Structure Of An N-Terminal Mutant Of The Plasmid
Pcu1 Trai Relaxase Domain
pdb|3L6T|B Chain B, Crystal Structure Of An N-Terminal Mutant Of The Plasmid
Pcu1 Trai Relaxase Domain
Length = 302
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 45 VRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTG 101
R+ ++VT+ F + + A + +LH + + +++ E+G WR D R
Sbjct: 132 TRQGKSVTQNTNNLVVATFRHETSRALDPDLHTHAFVMNMTQREDGQWRALKNDELMRNK 191
Query: 102 VFPSN-FVEEIPAETMTAESRHRKESNNNEADPA 134
+ + + +E+ E A R S NN D A
Sbjct: 192 MHLGDVYKQELALELTKAGYELRYNSKNNTFDMA 225
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY A ++L+ +KGD + + +SG WW+
Sbjct: 9 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKA 39
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY A ++L+ +KGD + + +SG WW+
Sbjct: 15 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKA 45
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
GS V +DY A +L+ KG+ + G WWE
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWE 43
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCR 60
G+S SVE + A+ L L G GI V+ G LV +Q+ RC
Sbjct: 447 GASAGTVSVEVSLSKGSANTLALSGGPATEGITVRPLPGTNGALVTGKQS------GRCA 500
Query: 61 VLFSYTPANADELEL 75
+++ T N + EL
Sbjct: 501 DIYNNTITNGTQAEL 515
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 64 SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
+Y E+ + VL + E GWW R + G PS+++
Sbjct: 16 AYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 152 SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196
+Y E+ + VL + E GWW R + G PS+++
Sbjct: 16 AYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTGVFPSNFVEEIPA 113
+ + N+ EL + DV++VL + + WW ++RD + G P N + PA
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDSRK-WW--KVRDPAGQEGYVPYNILTPYPA 65
Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 151 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTGVFPSNFVEEIPA 201
+ + N+ EL + DV++VL + + WW ++RD + G P N + PA
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDSRK-WW--KVRDPAGQEGYVPYNILTPYPA 65
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 62 LFSYTPANADELELHVNDVI------DVLSEVEEGWWRGRLRDRTGVFPSNFV 108
++++ N +EL + N + DV E WW + + G PSN++
Sbjct: 19 VYTFKARNPNELSVSANQKLKILEFKDVTGNTE--WWLAEVNGKKGYVPSNYI 69
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 150 LFSYTPANADELELHVNDVI------DVLSEVEEGWWRGRLRDRTGVFPSNFV 196
++++ N +EL + N + DV E WW + + G PSN++
Sbjct: 19 VYTFKARNPNELSVSANQKLKILEFKDVTGNTE--WWLAEVNGKKGYVPSNYI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,871,267
Number of Sequences: 62578
Number of extensions: 282380
Number of successful extensions: 1224
Number of sequences better than 100.0: 261
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 716
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)