Query psy10857
Match_columns 235
No_of_seqs 259 out of 2605
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:12:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4348|consensus 100.0 2.3E-35 5E-40 248.6 7.0 197 4-200 1-319 (627)
2 KOG1029|consensus 100.0 5E-33 1.1E-37 247.5 6.5 177 6-202 815-1111(1118)
3 KOG4226|consensus 100.0 2.6E-31 5.6E-36 212.4 14.7 195 4-205 4-255 (379)
4 KOG4225|consensus 100.0 3E-31 6.5E-36 224.0 12.7 194 5-198 231-488 (489)
5 KOG1029|consensus 100.0 3E-28 6.5E-33 217.2 11.3 201 4-207 693-969 (1118)
6 KOG4226|consensus 99.8 1.6E-20 3.4E-25 150.7 11.6 147 56-203 4-166 (379)
7 KOG4348|consensus 99.8 1E-21 2.2E-26 166.3 2.8 145 58-202 3-158 (627)
8 KOG3601|consensus 99.8 5.7E-21 1.2E-25 148.2 2.6 196 5-200 1-219 (222)
9 KOG4225|consensus 99.8 3.1E-19 6.7E-24 151.5 8.8 131 57-202 231-364 (489)
10 KOG4792|consensus 99.7 2.7E-17 5.9E-22 128.9 8.3 148 57-204 125-289 (293)
11 KOG4792|consensus 99.6 3.5E-16 7.6E-21 122.7 7.1 110 5-114 125-287 (293)
12 PF14604 SH3_9: Variant SH3 do 99.6 6.5E-15 1.4E-19 90.8 5.6 49 149-197 1-49 (49)
13 PF14604 SH3_9: Variant SH3 do 99.5 5.4E-14 1.2E-18 86.7 4.7 49 61-109 1-49 (49)
14 PF07653 SH3_2: Variant SH3 do 99.5 1.8E-13 4E-18 86.6 5.9 54 146-199 1-55 (55)
15 KOG2996|consensus 99.4 3.2E-13 6.9E-18 118.8 6.0 55 145-199 806-862 (865)
16 PF07653 SH3_2: Variant SH3 do 99.3 1.2E-12 2.7E-17 82.8 4.6 53 58-110 1-54 (55)
17 KOG3632|consensus 99.3 1.8E-12 3.9E-17 119.7 7.1 145 55-200 1137-1308(1335)
18 PF00018 SH3_1: SH3 domain; I 99.3 2.8E-12 6.1E-17 78.8 3.9 45 8-52 1-47 (48)
19 KOG2070|consensus 99.3 2.8E-12 6E-17 111.0 5.0 64 144-207 17-80 (661)
20 PF00018 SH3_1: SH3 domain; I 99.2 1.4E-11 3.1E-16 75.6 5.2 46 148-193 1-48 (48)
21 smart00326 SH3 Src homology 3 99.2 8.7E-11 1.9E-15 74.4 7.1 55 145-199 3-58 (58)
22 KOG2996|consensus 99.2 3E-11 6.5E-16 106.6 5.7 56 57-112 806-863 (865)
23 KOG2070|consensus 99.1 3.8E-11 8.3E-16 104.1 5.0 58 56-113 17-74 (661)
24 cd00174 SH3 Src homology 3 dom 99.1 1.4E-10 3.1E-15 72.4 6.4 51 147-197 2-53 (54)
25 KOG1118|consensus 99.1 3.8E-11 8.1E-16 98.5 4.1 57 144-200 306-362 (366)
26 KOG2199|consensus 99.1 1.2E-11 2.6E-16 104.7 1.2 59 142-200 213-271 (462)
27 KOG3632|consensus 99.1 2.1E-10 4.5E-15 106.4 7.1 112 4-115 1138-1311(1335)
28 smart00326 SH3 Src homology 3 99.1 4.3E-10 9.2E-15 71.2 6.0 55 56-110 2-57 (58)
29 KOG2199|consensus 99.1 4.7E-11 1E-15 101.1 1.4 59 54-112 213-271 (462)
30 KOG0162|consensus 99.0 2.8E-10 6E-15 102.9 6.0 54 145-198 1052-1105(1106)
31 cd00174 SH3 Src homology 3 dom 99.0 7.4E-10 1.6E-14 69.1 5.6 51 59-109 2-53 (54)
32 KOG1118|consensus 99.0 2.5E-10 5.3E-15 93.8 2.7 58 56-113 306-363 (366)
33 KOG3601|consensus 98.9 4.2E-10 9E-15 88.0 1.4 108 5-112 59-219 (222)
34 KOG1264|consensus 98.9 1.1E-09 2.4E-14 100.1 2.6 65 144-208 774-839 (1267)
35 KOG0162|consensus 98.8 5.4E-09 1.2E-13 94.7 4.2 55 57-111 1052-1106(1106)
36 KOG2546|consensus 98.8 2.6E-09 5.5E-14 91.4 1.7 55 145-199 424-478 (483)
37 KOG2856|consensus 98.7 4.4E-09 9.4E-14 88.4 0.5 55 145-199 415-471 (472)
38 KOG2856|consensus 98.5 2.6E-08 5.7E-13 83.8 1.1 55 57-111 415-471 (472)
39 KOG0515|consensus 98.5 5.4E-08 1.2E-12 85.6 1.7 56 145-200 684-742 (752)
40 KOG2546|consensus 98.5 4.2E-08 9.2E-13 84.0 0.7 65 49-113 416-480 (483)
41 KOG1264|consensus 98.4 9.8E-08 2.1E-12 87.7 2.3 60 56-115 774-834 (1267)
42 KOG3875|consensus 98.3 9.2E-08 2E-12 79.0 -0.7 57 145-201 269-332 (362)
43 KOG1702|consensus 98.3 8.8E-07 1.9E-11 69.1 4.0 57 143-199 206-264 (264)
44 KOG1702|consensus 98.3 9.9E-07 2.1E-11 68.8 3.9 57 55-111 206-264 (264)
45 KOG0515|consensus 98.2 7.3E-07 1.6E-11 78.7 3.0 58 57-114 684-744 (752)
46 KOG3655|consensus 98.2 6.1E-07 1.3E-11 78.2 1.0 56 144-199 427-483 (484)
47 KOG1843|consensus 98.1 1E-06 2.2E-11 75.4 2.2 55 144-198 416-472 (473)
48 KOG3655|consensus 98.1 1.4E-06 3E-11 76.1 2.0 57 55-111 426-483 (484)
49 KOG1843|consensus 98.1 2.1E-06 4.6E-11 73.5 2.8 55 56-110 416-472 (473)
50 KOG3523|consensus 98.1 2.5E-07 5.5E-12 82.6 -3.1 62 145-206 609-672 (695)
51 KOG3875|consensus 97.9 1.6E-06 3.5E-11 71.7 -0.5 60 56-115 268-334 (362)
52 KOG3523|consensus 97.8 4.1E-06 8.8E-11 75.1 -0.7 59 57-115 609-669 (695)
53 KOG4278|consensus 97.7 3.8E-05 8.3E-10 69.9 5.0 57 144-201 90-148 (1157)
54 KOG3725|consensus 97.6 1.4E-05 3.1E-10 64.6 0.6 56 144-199 317-374 (375)
55 KOG2222|consensus 97.6 1E-05 2.2E-10 70.9 -0.6 60 56-115 548-607 (848)
56 KOG4773|consensus 97.4 1.2E-05 2.6E-10 67.6 -2.2 165 19-200 31-231 (386)
57 KOG4278|consensus 97.4 0.00022 4.7E-09 65.2 5.2 59 54-113 88-148 (1157)
58 KOG4773|consensus 97.4 1.7E-05 3.7E-10 66.7 -1.6 59 57-115 176-234 (386)
59 KOG2528|consensus 97.4 8.7E-05 1.9E-09 64.5 2.5 55 146-200 4-60 (490)
60 KOG3557|consensus 97.2 0.00019 4.1E-09 65.1 2.6 62 144-206 500-562 (721)
61 KOG2528|consensus 97.1 0.00041 9E-09 60.4 3.1 59 57-115 3-63 (490)
62 KOG3775|consensus 97.1 0.0003 6.4E-09 60.0 2.1 57 146-202 264-322 (482)
63 KOG0197|consensus 97.0 0.00019 4.2E-09 63.8 0.5 56 144-199 11-69 (468)
64 KOG2222|consensus 97.0 0.00022 4.8E-09 62.8 0.6 49 5-53 549-597 (848)
65 KOG4575|consensus 96.9 0.0015 3.3E-08 59.3 5.2 62 53-114 5-68 (874)
66 KOG1451|consensus 96.9 0.0011 2.4E-08 59.8 4.1 56 144-199 756-812 (812)
67 KOG3725|consensus 96.9 0.0004 8.7E-09 56.4 1.1 56 56-111 317-374 (375)
68 KOG3771|consensus 96.8 0.0014 3E-08 57.7 4.3 54 144-197 400-454 (460)
69 KOG3557|consensus 96.8 0.00048 1E-08 62.6 1.2 59 56-115 500-559 (721)
70 KOG4429|consensus 96.7 0.00055 1.2E-08 56.6 0.9 55 145-199 364-418 (421)
71 KOG3775|consensus 96.7 0.0011 2.4E-08 56.7 2.5 59 57-115 263-323 (482)
72 KOG4575|consensus 96.6 0.0029 6.3E-08 57.5 4.7 56 144-200 8-66 (874)
73 KOG3771|consensus 96.6 0.001 2.2E-08 58.6 1.6 46 4-49 400-446 (460)
74 KOG0609|consensus 96.5 0.0014 3E-08 58.7 1.8 47 5-51 215-273 (542)
75 KOG0609|consensus 96.4 0.0012 2.7E-08 58.9 1.4 54 57-110 215-280 (542)
76 KOG0197|consensus 96.4 0.0016 3.4E-08 58.1 2.0 56 56-111 11-69 (468)
77 KOG1451|consensus 96.4 0.0044 9.5E-08 56.1 4.2 56 56-111 756-812 (812)
78 KOG3565|consensus 96.2 0.00046 9.9E-09 64.1 -2.9 59 142-200 576-637 (640)
79 KOG4429|consensus 96.2 0.002 4.3E-08 53.4 1.1 54 58-111 365-418 (421)
80 PF14603 hSH3: Helically-exten 95.6 0.018 3.8E-07 39.2 3.4 46 157-202 29-75 (89)
81 PF08239 SH3_3: Bacterial SH3 95.5 0.042 9.1E-07 34.0 4.9 36 162-197 18-55 (55)
82 PF14603 hSH3: Helically-exten 94.9 0.03 6.4E-07 38.1 2.9 44 70-113 30-74 (89)
83 smart00287 SH3b Bacterial SH3 94.0 0.12 2.7E-06 32.7 4.4 37 161-197 25-62 (63)
84 PF08239 SH3_3: Bacterial SH3 93.9 0.099 2.1E-06 32.2 3.7 36 74-109 18-55 (55)
85 KOG0199|consensus 93.3 0.11 2.4E-06 48.8 4.3 51 59-109 377-430 (1039)
86 KOG3565|consensus 92.7 0.037 8E-07 51.7 0.4 59 54-112 576-637 (640)
87 KOG0199|consensus 92.5 0.15 3.3E-06 47.9 4.0 52 147-198 377-431 (1039)
88 PF06347 SH3_4: Bacterial SH3 92.4 0.35 7.6E-06 29.9 4.5 36 160-196 18-53 (55)
89 KOG3812|consensus 92.1 0.088 1.9E-06 44.9 1.8 50 57-106 59-118 (475)
90 smart00287 SH3b Bacterial SH3 91.9 0.27 5.8E-06 31.1 3.6 37 73-109 25-62 (63)
91 PRK10884 SH3 domain-containing 91.8 0.21 4.6E-06 40.1 3.6 40 161-200 48-89 (206)
92 PRK13914 invasion associated s 90.7 0.52 1.1E-05 42.5 5.4 40 161-200 103-143 (481)
93 KOG0040|consensus 90.6 0.0065 1.4E-07 60.3 -7.1 58 145-202 969-1026(2399)
94 COG3103 SH3 domain protein [Si 90.5 0.55 1.2E-05 37.6 4.8 88 22-111 49-152 (205)
95 PF06347 SH3_4: Bacterial SH3 89.5 0.59 1.3E-05 28.8 3.5 35 73-108 19-53 (55)
96 PRK10884 SH3 domain-containing 89.2 0.45 9.8E-06 38.2 3.4 39 74-112 49-89 (206)
97 COG3103 SH3 domain protein [Si 89.0 0.52 1.1E-05 37.7 3.7 101 74-198 49-151 (205)
98 KOG3812|consensus 88.9 0.19 4.1E-06 42.9 1.1 47 147-193 61-117 (475)
99 KOG3705|consensus 87.2 0.64 1.4E-05 40.7 3.3 54 145-198 510-565 (580)
100 KOG0040|consensus 85.1 0.034 7.4E-07 55.5 -5.9 57 58-114 970-1026(2399)
101 PF11302 DUF3104: Protein of u 84.1 1.2 2.7E-05 29.4 2.8 25 20-44 3-33 (75)
102 smart00743 Agenet Tudor-like d 83.1 1.7 3.7E-05 27.3 3.1 24 22-45 2-25 (61)
103 KOG3580|consensus 80.0 2.4 5.1E-05 39.3 3.9 51 56-106 504-563 (1027)
104 PRK13914 invasion associated s 79.6 2.2 4.8E-05 38.6 3.6 30 22-51 104-134 (481)
105 KOG3705|consensus 79.4 3.7 7.9E-05 36.2 4.7 53 1-53 506-560 (580)
106 COG3807 Uncharacterized protei 78.4 7.2 0.00016 29.6 5.4 98 73-193 59-158 (171)
107 smart00743 Agenet Tudor-like d 70.1 6.5 0.00014 24.5 3.1 23 162-184 2-24 (61)
108 COG3807 Uncharacterized protei 66.3 18 0.00039 27.4 5.1 83 22-106 60-159 (171)
109 PF12913 SH3_6: SH3 domain of 64.9 21 0.00045 22.1 4.4 34 160-193 20-54 (54)
110 KOG4384|consensus 64.5 3.8 8.3E-05 35.3 1.5 63 146-208 138-202 (361)
111 COG5164 SPT5 Transcription elo 61.0 19 0.00041 32.4 5.0 56 23-86 91-151 (607)
112 PF11302 DUF3104: Protein of u 57.1 14 0.0003 24.5 2.8 24 160-183 3-32 (75)
113 PF12913 SH3_6: SH3 domain of 52.0 31 0.00066 21.4 3.6 31 22-52 22-53 (54)
114 KOG1999|consensus 49.0 73 0.0016 31.5 7.2 61 17-85 402-470 (1024)
115 PF05641 Agenet: Agenet domain 46.7 23 0.0005 22.7 2.7 22 23-44 1-25 (68)
116 KOG1314|consensus 45.9 22 0.00047 30.9 2.9 42 157-199 330-383 (414)
117 CHL00141 rpl24 ribosomal prote 44.5 23 0.00049 24.0 2.4 24 20-51 6-29 (83)
118 KOG3580|consensus 42.3 46 0.00099 31.2 4.6 49 145-193 505-562 (1027)
119 PRK12281 rplX 50S ribosomal pr 40.5 29 0.00062 23.1 2.4 23 21-51 5-27 (76)
120 smart00333 TUDOR Tudor domain. 38.6 54 0.0012 19.7 3.4 24 22-46 2-25 (57)
121 COG0186 RpsQ Ribosomal protein 32.3 35 0.00075 23.4 1.8 22 12-34 46-67 (87)
122 PF07828 PA-IL: PA-IL-like pro 31.4 34 0.00074 24.7 1.7 17 18-34 15-31 (121)
123 KOG1708|consensus 29.1 49 0.0011 26.4 2.3 28 17-52 67-94 (236)
124 KOG4384|consensus 26.9 40 0.00086 29.3 1.6 58 58-115 138-197 (361)
125 PRK00004 rplX 50S ribosomal pr 24.1 75 0.0016 22.5 2.4 23 21-51 3-25 (105)
126 PF12707 DUF3804: Protein of u 23.7 1.7E+02 0.0036 21.3 4.0 58 18-92 52-111 (128)
127 PF14783 BBS2_Mid: Ciliary BBS 23.1 2.9E+02 0.0064 19.8 6.8 18 5-22 2-19 (111)
128 PF14453 ThiS-like: ThiS-like 23.0 92 0.002 19.5 2.3 17 18-34 40-56 (57)
129 TIGR01080 rplX_A_E ribosomal p 21.1 90 0.0019 22.6 2.3 26 18-51 37-62 (114)
130 TIGR01079 rplX_bact ribosomal 20.6 98 0.0021 21.9 2.4 23 21-51 2-24 (104)
No 1
>KOG4348|consensus
Probab=100.00 E-value=2.3e-35 Score=248.56 Aligned_cols=197 Identities=42% Similarity=0.847 Sum_probs=157.4
Q ss_pred ceEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeeeccceee--------------------------------
Q psy10857 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-------------------------------- 51 (235)
Q Consensus 4 ~~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v-------------------------------- 51 (235)
++.|++-|||.|.++|||+++.|+||.-+.+.+.|||+|+++|++|.|
T Consensus 1 mvd~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~ 80 (627)
T KOG4348|consen 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSR 80 (627)
T ss_pred CcceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccC
Confidence 467999999999999999999999999999999999999999999966
Q ss_pred ---------------eCCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCccc
Q psy10857 52 ---------------TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETM 116 (235)
Q Consensus 52 ---------------~~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~ 116 (235)
.....+.|++.|.|.++.++||.|+.||+|.++.....|||.|..+|+.|+||+|||..+.....
T Consensus 81 n~l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sd 160 (627)
T KOG4348|consen 81 NPLTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSD 160 (627)
T ss_pred CCccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCc
Confidence 11224579999999999999999999999999999999999999999999999999998765542
Q ss_pred ccc--------------cccccC---------------CCC-----------------------CCCC--c------cc-
Q psy10857 117 TAE--------------SRHRKE---------------SNN-----------------------NEAD--P------AK- 135 (235)
Q Consensus 117 ~~~--------------~~~~~~---------------~~~-----------------------~~~~--~------~~- 135 (235)
... +..+.+ +|. +..+ + ..
T Consensus 161 e~~~aqd~~~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l 240 (627)
T KOG4348|consen 161 ESAAAQDPAASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSAL 240 (627)
T ss_pred chhhhcCcccchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhcc
Confidence 110 000000 000 0000 0 00
Q ss_pred ccc----c--------cCCCCcEEEEEeecCCCCCCcccccCCCEEEEeee--CCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 136 ALA----A--------TIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 136 ~~~----~--------~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
... . ......+|+++|.|+++..+||.|+.||+|.++.+ .+.|||+|+++|+.|+||-|||..+.
T Consensus 241 ~asT~s~d~tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 241 SASTQSVDITKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred CccccCccccccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 000 0 01124789999999999999999999999988777 67899999999999999999998875
No 2
>KOG1029|consensus
Probab=99.97 E-value=5e-33 Score=247.50 Aligned_cols=177 Identities=28% Similarity=0.604 Sum_probs=151.8
Q ss_pred EEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeeeccceee----------------------------------
Q psy10857 6 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV---------------------------------- 51 (235)
Q Consensus 6 ~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v---------------------------------- 51 (235)
+|+|+|.|.+..+++|+|.+||+|.|+++. +.||+|+..|..|||
T Consensus 815 q~iA~y~wrakke~dLsFskgd~I~Vlekq-emwW~G~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~ 893 (1118)
T KOG1029|consen 815 QAIALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWFGEVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAAS 893 (1118)
T ss_pred hHHhhccccccccccccccCCCeeeeehhc-cceecccccCccCcCcHHhhhhccccccccccccCcccccccCcccccc
Confidence 689999999999999999999999999964 799999999999976
Q ss_pred --------------------------------------------------------------------------------
Q psy10857 52 -------------------------------------------------------------------------------- 51 (235)
Q Consensus 52 -------------------------------------------------------------------------------- 51 (235)
T Consensus 894 ~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g 973 (1118)
T KOG1029|consen 894 DATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQG 973 (1118)
T ss_pred ccCcccccccccceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccccceeeehhccCCCCCCCCC
Confidence
Q ss_pred -eCCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee--CC---ccccccCcceecccCcccccccccccC
Q psy10857 52 -TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RD---RTGVFPSNFVEEIPAETMTAESRHRKE 125 (235)
Q Consensus 52 -~~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~--~g---~~G~~P~~~v~~~~~~~~~~~~~~~~~ 125 (235)
....+..+.++.+|.+..+..|++..|++|.|.++...|||.|+. +| +.||||++||+.+.... .|
T Consensus 974 ~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s------~r-- 1045 (1118)
T KOG1029|consen 974 PTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGS------GR-- 1045 (1118)
T ss_pred CCCCCchhhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCC------Cc--
Confidence 001123567889999999999999999999999999999999996 55 46999999999986643 11
Q ss_pred CCCCCCCccccccccCCCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEeccCC
Q psy10857 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 202 (235)
.+|...+..+++++|||.++.++||+|.+||+|.|+.+.+..||.|+.+|+.|+||+|||..+..+
T Consensus 1046 -----------aTPa~~~v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ttd 1111 (1118)
T KOG1029|consen 1046 -----------ATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQTTD 1111 (1118)
T ss_pred -----------CCCCCCccceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccccC
Confidence 222333457899999999999999999999999999999999999999999999999999765433
No 3
>KOG4226|consensus
Probab=99.97 E-value=2.6e-31 Score=212.37 Aligned_cols=195 Identities=24% Similarity=0.482 Sum_probs=154.7
Q ss_pred ceEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeee-ccceeee------------------------------
Q psy10857 4 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RERQAVT------------------------------ 52 (235)
Q Consensus 4 ~~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~-g~~G~v~------------------------------ 52 (235)
...++|.|||.|+.+.||.+++++.+.++. +...||++++. ++.|+|+
T Consensus 4 ~~~vvak~dy~aq~~qeldikkner~~lld-dsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k 82 (379)
T KOG4226|consen 4 EVIVVAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRK 82 (379)
T ss_pred EEEEEEEechhcccchhccccccceEEEEc-CCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccC
Confidence 467899999999999999999999999887 56899999986 7788760
Q ss_pred -------C--------------CCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecc
Q psy10857 53 -------E--------------QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 53 -------~--------------~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
. .....+.+.|.|.++.++||++.+|..|.|+++..+|||+|..+|+.||||++|+.+.
T Consensus 83 ~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 83 TSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEE 162 (379)
T ss_pred CCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehh
Confidence 0 0123578899999999999999999999999999999999999999999999999876
Q ss_pred cCccccccc--ccccCCCCCCCCccccccccCCCCcEEEEEeecCCCCCCcccccCCCEEEEeee--CCCCeEEEE-eCC
Q psy10857 112 PAETMTAES--RHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGR-LRD 186 (235)
Q Consensus 112 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~--~~~~w~~~~-~~g 186 (235)
.+...-... .++.. .......+.......+++||.|.+....||+|++||.+.|+++ .+++||.++ ..|
T Consensus 163 ~ds~~gd~~s~~~~~~------~A~a~n~~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G 236 (379)
T KOG4226|consen 163 VDSAAGDSPSFLSLRK------AASASNGQGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARG 236 (379)
T ss_pred ccccccCCccceecch------hhcccCCCCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCC
Confidence 554311111 00000 0000111112224678999999999999999999999999988 788899999 789
Q ss_pred eEEEecCCCeEeccCCCcc
Q psy10857 187 RTGVFPSNFVEEIPAETMT 205 (235)
Q Consensus 187 ~~G~~P~~~v~~~~~~~~~ 205 (235)
+.|++|.|||..+.+....
T Consensus 237 ~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 237 QVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred ccceeecceEEEeccCccc
Confidence 9999999999998765533
No 4
>KOG4225|consensus
Probab=99.97 E-value=3e-31 Score=223.99 Aligned_cols=194 Identities=30% Similarity=0.595 Sum_probs=153.1
Q ss_pred eEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeeeccceeeeC------------C----------CCcEEEEe
Q psy10857 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTE------------Q----------PGRRCRVL 62 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v~~------------~----------~~~~~~a~ 62 (235)
+.++|+|+|.+++..||+|.+||||.|+++.|.+|++|+.+|+.|+|+. . ....++|+
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~ 310 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAK 310 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCccccccccccccc
Confidence 4589999999999999999999999999999999999999999998821 0 12358999
Q ss_pred eecCCCCCCCccccCCCEEEEEeecCCceEEeeeC--CccccccCcceecccCccccc-----------cc-cc-ccC--
Q psy10857 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPAETMTA-----------ES-RH-RKE-- 125 (235)
Q Consensus 63 ~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~~~~~-----------~~-~~-~~~-- 125 (235)
|+|.+....||++++|+.|.+..+.+..|.+|.+. ++.|+||.+||+.+....... .. .. ++.
T Consensus 311 y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~~ 390 (489)
T KOG4225|consen 311 YNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLSE 390 (489)
T ss_pred CCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhccccc
Confidence 99999999999999999999999999999999975 799999999999876553111 00 00 000
Q ss_pred -C-C-------C--CCC-------Ccc---ccc--cccCCCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEE
Q psy10857 126 -S-N-------N--NEA-------DPA---KAL--AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG 182 (235)
Q Consensus 126 -~-~-------~--~~~-------~~~---~~~--~~~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~ 182 (235)
+ + + +.+ ++. ... .........++|||.|.++.++||-|..||+|.|++++++||+.|
T Consensus 391 ~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvG 470 (489)
T KOG4225|consen 391 DSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVG 470 (489)
T ss_pred chhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccCcceec
Confidence 0 0 0 000 000 000 111112345799999999999999999999999999999999999
Q ss_pred --EeCCeEEEecCCCeEe
Q psy10857 183 --RLRDRTGVFPSNFVEE 198 (235)
Q Consensus 183 --~~~g~~G~~P~~~v~~ 198 (235)
++.|+-|.||.|||+.
T Consensus 471 ts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 471 TSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceecccccccCcccccc
Confidence 5889999999999975
No 5
>KOG1029|consensus
Probab=99.95 E-value=3e-28 Score=217.19 Aligned_cols=201 Identities=24% Similarity=0.472 Sum_probs=149.2
Q ss_pred ceEEEEEeccCCCCCCcccccCCCEEEEEEc--cCCCeeeeeeeccceeee-----------------------------
Q psy10857 4 VIEASVEFDYTAQEADELTLRKGDLITGIRV--QSGGWWEGLLVRERQAVT----------------------------- 52 (235)
Q Consensus 4 ~~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~--~~~~W~~~~~~g~~G~v~----------------------------- 52 (235)
.+.|+|+|.|.+.+.|||+|..||||.|.+. .+.||..|++.|+.|||+
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~ps 772 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTPS 772 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCcc
Confidence 6799999999999999999999999999876 567999999999999870
Q ss_pred ---------------------------------C----CCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEee
Q psy10857 53 ---------------------------------E----QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR 95 (235)
Q Consensus 53 ---------------------------------~----~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~ 95 (235)
+ ..+.+|.|+|.|.+..+.+|+|.+||+|.|+++ ...||.|.
T Consensus 773 as~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~Vlek-qemwW~G~ 851 (1118)
T KOG1029|consen 773 ASVNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEK-QEMWWFGE 851 (1118)
T ss_pred cccccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehh-ccceeccc
Confidence 0 011267899999999999999999999999998 56799999
Q ss_pred eCCccccccCcceecccCcccccccccccCCCCCCCCccc------cccccCCCCcEEEEEeecC-CCCCCcccccCCCE
Q psy10857 96 LRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAK------ALAATIEPGRRCRVLFSYT-PANADELELHVNDV 168 (235)
Q Consensus 96 ~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~al~dy~-~~~~~eLs~~~gd~ 168 (235)
..|..||||.+||+.+.....+...... ..+.+...+.. .......+..++.++|.|. +....+|.|..||.
T Consensus 852 v~g~~GwFPksYVk~~~~~t~st~~~~s-~es~sae~p~~~~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~ 930 (1118)
T KOG1029|consen 852 VAGEIGWFPKSYVKEVGAITGSTTKIES-PESLSAEAPGAAASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDE 930 (1118)
T ss_pred ccCccCcCcHHhhhhccccccccccccC-cccccccCccccccccCcccccccccceeEEEecccccccCCCccccccce
Confidence 9999999999999965443311111000 00111111100 0111122345666666554 57889999999999
Q ss_pred EEEeeeCCCCeEEEEeCCeEEEecCC-CeEeccCCCcccc
Q psy10857 169 IDVLSEVEEGWWRGRLRDRTGVFPSN-FVEEIPAETMTAE 207 (235)
Q Consensus 169 v~v~~~~~~~w~~~~~~g~~G~~P~~-~v~~~~~~~~~~~ 207 (235)
|.|+++. +.||.|+++++.|+||++ |+..++.+....+
T Consensus 931 iLvtekd-geww~gt~~~r~gifPan~y~r~~~q~gs~Tp 969 (1118)
T KOG1029|consen 931 ILVTEKD-GEWWTGTCGDREGIFPANYYVRPKDQEGSGTP 969 (1118)
T ss_pred EEEeecc-CceeccccCCccccccccceeeehhccCCCCC
Confidence 9887654 479999999999999999 7777765544433
No 6
>KOG4226|consensus
Probab=99.84 E-value=1.6e-20 Score=150.68 Aligned_cols=147 Identities=27% Similarity=0.493 Sum_probs=108.8
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee-CCccccccCcceecccCcccccc-------cccccCCC
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPAETMTAE-------SRHRKESN 127 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~~~~~~~~~-------~~~~~~~~ 127 (235)
...++|.+||.++.+.||.+++.+.+.++.. ...||+++. ..+.|++|++||+.-....-... .....-++
T Consensus 4 ~~~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k 82 (379)
T KOG4226|consen 4 EVIVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRK 82 (379)
T ss_pred EEEEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccC
Confidence 3567899999999999999999999988774 567999997 77999999999986543320000 00011112
Q ss_pred CCCCCcccc--------ccccCCCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 128 NNEADPAKA--------LAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 128 ~~~~~~~~~--------~~~~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
++.+....+ +.+.......+.+.|.|.++.++||++.+|+.|.|+++..+|||+|..+|+.||||+|||.+.
T Consensus 83 ~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 83 TSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEE 162 (379)
T ss_pred CCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehh
Confidence 222111111 111122245689999999999999999999999999999999999999999999999999986
Q ss_pred cCCC
Q psy10857 200 PAET 203 (235)
Q Consensus 200 ~~~~ 203 (235)
..+.
T Consensus 163 ~ds~ 166 (379)
T KOG4226|consen 163 VDSA 166 (379)
T ss_pred cccc
Confidence 5443
No 7
>KOG4348|consensus
Probab=99.83 E-value=1e-21 Score=166.34 Aligned_cols=145 Identities=41% Similarity=0.782 Sum_probs=113.4
Q ss_pred EEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCcccc-cccc--cc-----cCCCCC
Q psy10857 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMT-AESR--HR-----KESNNN 129 (235)
Q Consensus 58 ~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~-~~~~--~~-----~~~~~~ 129 (235)
.+++-|||+++.+++|.++.|++|.-+.+.+.|||.|..+|+.|+||-+||..+....-. +... .| +...++
T Consensus 3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~ 82 (627)
T KOG4348|consen 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNP 82 (627)
T ss_pred ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCC
Confidence 467889999999999999999999988888999999999999999999999887665200 0111 01 111111
Q ss_pred ---CCCccccccccCCCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEeccCC
Q psy10857 130 ---EADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 130 ---~~~~~~~~~~~~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 202 (235)
.++......+..+...+|+++|.|.++..+||.|+.||+|.|+.....|||.|.++|+.|.||+|||+.+...
T Consensus 83 l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 83 LTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTP 158 (627)
T ss_pred ccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCC
Confidence 1111111122222357899999999999999999999999999999999999999999999999999998644
No 8
>KOG3601|consensus
Probab=99.81 E-value=5.7e-21 Score=148.20 Aligned_cols=196 Identities=23% Similarity=0.322 Sum_probs=153.4
Q ss_pred eEEEEEeccCCCCCCcccccCCCEEEEEEc-cCCCeeeeeeeccceeeeCC-----CCcEEEEeeecCCCCCCCccccCC
Q psy10857 5 IEASVEFDYTAQEADELTLRKGDLITGIRV-QSGGWWEGLLVRERQAVTEQ-----PGRRCRVLFSYTPANADELELHVN 78 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~-~~~~W~~~~~~g~~G~v~~~-----~~~~~~a~~~~~~~~~~eLs~~~G 78 (235)
|+++++++|.+.-.+||+|.+||+|.++.. ++-+|+..++.|..|+++.. ....+.+++++.......+..+.|
T Consensus 1 Mea~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G 80 (222)
T KOG3601|consen 1 MEAVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDG 80 (222)
T ss_pred CchhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcc
Confidence 689999999999999999999999999987 44589999999999987543 345677888888888888888899
Q ss_pred CEEEEEeecCCceEEeeeCCccccccCcceecccCccccc----------ccccccCCCCCCCC-------ccccccccC
Q psy10857 79 DVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTA----------ESRHRKESNNNEAD-------PAKALAATI 141 (235)
Q Consensus 79 ~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~----------~~~~~~~~~~~~~~-------~~~~~~~~~ 141 (235)
+.+..+.+...+|+.+.++...|.+|..+|++-....... ....|..+.....+ +...+.+..
T Consensus 81 ~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~ 160 (222)
T KOG3601|consen 81 DFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPA 160 (222)
T ss_pred hhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCC
Confidence 9999999999999999999999999999997644333111 11111111100100 001112222
Q ss_pred CCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 142 ~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
+...+.+++|||.++.+.+|.|++||.+.|+...+.-||.|.+.|+.|+||++|+..++
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~d 219 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPSD 219 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccccc
Confidence 34567899999999999999999999999999999999999999999999999997654
No 9
>KOG4225|consensus
Probab=99.79 E-value=3.1e-19 Score=151.52 Aligned_cols=131 Identities=26% Similarity=0.640 Sum_probs=109.5
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCcccccccccccCCCCCCCCcccc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKA 136 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (235)
..++|+|+|.++...||.|.+||+|.|+++.+..|+.|+..|+.|+||++||+.+..... .. +..
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~-~q-------------P~~- 295 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREK-AQ-------------PAR- 295 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccc-cC-------------cCC-
Confidence 357899999999999999999999999999999999999999999999999999876331 00 000
Q ss_pred cccc-CCCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeC--CeEEEecCCCeEeccCC
Q psy10857 137 LAAT-IEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 137 ~~~~-~~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~ 202 (235)
+++. ......++|.|+|.+....||++++|+.|.++...+..|.+|+.. ++.|+||.+||+.+...
T Consensus 296 ~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~ 364 (489)
T KOG4225|consen 296 PPPQQVLEQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSP 364 (489)
T ss_pred CCcccccccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcc
Confidence 0111 111246899999999999999999999999999999999999954 68999999999998654
No 10
>KOG4792|consensus
Probab=99.71 E-value=2.7e-17 Score=128.88 Aligned_cols=148 Identities=20% Similarity=0.395 Sum_probs=106.6
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee-CCccccccCcceecccCccccc--cc---ccccCCCC--
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPAETMTA--ES---RHRKESNN-- 128 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~~~~~~~~--~~---~~~~~~~~-- 128 (235)
..++++|||.+...++|.|++|+++.|+++.+..||..+. .|+.|++|..||+.+.....+. .+ ....-+++
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~ 204 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGG 204 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCC
Confidence 3567899999999999999999999999999999999996 8999999999999876544111 00 00000000
Q ss_pred ----CCCCccccc--cccC-CCCcEEEEEeecCCCC--CCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 129 ----NEADPAKAL--AATI-EPGRRCRVLFSYTPAN--ADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 129 ----~~~~~~~~~--~~~~-~~~~~~~al~dy~~~~--~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
.+..+.+.. .+.. ..+.+++++++-.+.. .-.|.+++||+|.|.++..+|.|+++++|+.|.||..||+.+
T Consensus 205 g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 205 GAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred CCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 000000000 1111 1135667777655443 337999999999999999999999999999999999999987
Q ss_pred cCCCc
Q psy10857 200 PAETM 204 (235)
Q Consensus 200 ~~~~~ 204 (235)
+..++
T Consensus 285 d~~~~ 289 (293)
T KOG4792|consen 285 DVQNP 289 (293)
T ss_pred ccCCc
Confidence 65443
No 11
>KOG4792|consensus
Probab=99.64 E-value=3.5e-16 Score=122.68 Aligned_cols=110 Identities=23% Similarity=0.453 Sum_probs=93.6
Q ss_pred eEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeee-ccceeee-------------------------------
Q psy10857 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RERQAVT------------------------------- 52 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~-g~~G~v~------------------------------- 52 (235)
...+|+|||.+..++||.|++||++.|+++.++.||.+++. |+.|.++
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~ 204 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGG 204 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCC
Confidence 45678999999999999999999999999999999999986 8999660
Q ss_pred -------------------CCCCcEEEEeeecCCCCCC--CccccCCCEEEEEeecCCceEEeeeCCccccccCcceecc
Q psy10857 53 -------------------EQPGRRCRVLFSYTPANAD--ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 53 -------------------~~~~~~~~a~~~~~~~~~~--eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
...+..++++++..+...+ .|.+++||+|.|.++..+|-|+|+++|+.|.||..||+..
T Consensus 205 g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 205 GAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred CCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 0113467788887776544 4999999999999999999999999999999999999887
Q ss_pred cCc
Q psy10857 112 PAE 114 (235)
Q Consensus 112 ~~~ 114 (235)
+..
T Consensus 285 d~~ 287 (293)
T KOG4792|consen 285 DVQ 287 (293)
T ss_pred ccC
Confidence 653
No 12
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.56 E-value=6.5e-15 Score=90.85 Aligned_cols=49 Identities=47% Similarity=1.004 Sum_probs=45.1
Q ss_pred EEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeE
Q psy10857 149 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197 (235)
Q Consensus 149 al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 197 (235)
|+|+|.++.++||+|++||+|.|+++.+++||+++.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999999999999999999999999985
No 13
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.48 E-value=5.4e-14 Score=86.71 Aligned_cols=49 Identities=47% Similarity=1.004 Sum_probs=45.0
Q ss_pred EeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCccee
Q psy10857 61 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109 (235)
Q Consensus 61 a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~ 109 (235)
|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999989999999999999999999985
No 14
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.45 E-value=1.8e-13 Score=86.61 Aligned_cols=54 Identities=44% Similarity=0.903 Sum_probs=48.4
Q ss_pred EEEEEeecCCCCCCcccccCCCEEEEe-eeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 146 RCRVLFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 146 ~~~al~dy~~~~~~eLs~~~gd~v~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
+++|++||.+..+++|+|++||+|.|+ ++..++||.++.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 778889999999999999999999864
No 15
>KOG2996|consensus
Probab=99.40 E-value=3.2e-13 Score=118.82 Aligned_cols=55 Identities=31% Similarity=0.733 Sum_probs=50.1
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeee--CCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
..+++-|||.+....+|||+.||+|.++.+ .+.|||+|+.+|+.||||++||++-
T Consensus 806 g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 806 GTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred eeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 567888999999999999999999999988 5679999999999999999999864
No 16
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.35 E-value=1.2e-12 Score=82.80 Aligned_cols=53 Identities=43% Similarity=0.895 Sum_probs=47.7
Q ss_pred EEEEeeecCCCCCCCccccCCCEEEEE-eecCCceEEeeeCCccccccCcceec
Q psy10857 58 RCRVLFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRLRDRTGVFPSNFVEE 110 (235)
Q Consensus 58 ~~~a~~~~~~~~~~eLs~~~G~~v~v~-~~~~~~w~~g~~~g~~G~~P~~~v~~ 110 (235)
+++|+++|.+..+++|+|.+||+|.|+ +..+++||.++.+|+.||||.+||++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 478999999999999999999999999 77788999999999999999999976
No 17
>KOG3632|consensus
Probab=99.34 E-value=1.8e-12 Score=119.66 Aligned_cols=145 Identities=29% Similarity=0.560 Sum_probs=104.3
Q ss_pred CCcEEEEeeecCCC--------CCCCccccCCCEEEEEeec-CCceEEeeeCCccccccCcceecccCcccccccccccC
Q psy10857 55 PGRRCRVLFSYTPA--------NADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKE 125 (235)
Q Consensus 55 ~~~~~~a~~~~~~~--------~~~eLs~~~G~~v~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~ 125 (235)
+...++|+|||++- ...||.|++|++|.|+... .+|++.|+++|+.|++|.|+|.++........-.-| .
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~r-q 1215 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWR-Q 1215 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHH-h
Confidence 45688999999973 3568999999999998854 589999999999999999999886543300100000 0
Q ss_pred CCCCCCC-------cccc--ccccC-CCCcEEEEEeecCCCCC-------CcccccCCCEEEEeee-CCCCeEEEEeCCe
Q psy10857 126 SNNNEAD-------PAKA--LAATI-EPGRRCRVLFSYTPANA-------DELELHVNDVIDVLSE-VEEGWWRGRLRDR 187 (235)
Q Consensus 126 ~~~~~~~-------~~~~--~~~~~-~~~~~~~al~dy~~~~~-------~eLs~~~gd~v~v~~~-~~~~w~~~~~~g~ 187 (235)
...++.. ...+ ..... .++.++++.+||.++.. .+|.|..||+|.|..+ .++|+++|+++|+
T Consensus 1216 G~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngq 1295 (1335)
T KOG3632|consen 1216 GLLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQ 1295 (1335)
T ss_pred ccCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCc
Confidence 0000000 0000 00011 24568899999998853 4899999999999888 7788999999999
Q ss_pred EEEecCCCeEecc
Q psy10857 188 TGVFPSNFVEEIP 200 (235)
Q Consensus 188 ~G~~P~~~v~~~~ 200 (235)
.|++|+++++.+.
T Consensus 1296 kglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1296 KGLVPSNFLEAPN 1308 (1335)
T ss_pred cCccccccccCCC
Confidence 9999999998764
No 18
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.29 E-value=2.8e-12 Score=78.81 Aligned_cols=45 Identities=29% Similarity=0.616 Sum_probs=41.1
Q ss_pred EEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeee--ccceeee
Q psy10857 8 SVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV--RERQAVT 52 (235)
Q Consensus 8 ~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~--g~~G~v~ 52 (235)
+|+|||.++.++||+|++||+|.|+++.+++||.++.. ++.|+||
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP 47 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVP 47 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEee
Confidence 69999999999999999999999999999999999987 5889885
No 19
>KOG2070|consensus
Probab=99.29 E-value=2.8e-12 Score=111.01 Aligned_cols=64 Identities=42% Similarity=0.703 Sum_probs=57.5
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEeccCCCcccc
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAE 207 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~ 207 (235)
...++|.|.|.+...+||+|.+||+|.|.+..+.|||+|+++|++||||++||..+..+....+
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~pLs~ 80 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKPLSP 80 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCCCCc
Confidence 3578999999999999999999999999999999999999999999999999999875444433
No 20
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.24 E-value=1.4e-11 Score=75.61 Aligned_cols=46 Identities=35% Similarity=0.847 Sum_probs=41.9
Q ss_pred EEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeC--CeEEEecC
Q psy10857 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPS 193 (235)
Q Consensus 148 ~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~--g~~G~~P~ 193 (235)
+|+|||.++.+++|+|++||.|.|+++.+.+||.++.. ++.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999999999999954 69999995
No 21
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.19 E-value=8.7e-11 Score=74.42 Aligned_cols=55 Identities=47% Similarity=1.030 Sum_probs=50.5
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeC-CeEEEecCCCeEec
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR-DRTGVFPSNFVEEI 199 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~~ 199 (235)
..++++++|.+..+++|+|.+||.|.++.....+||.++.. ++.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 46899999999999999999999999999988999999976 99999999999753
No 22
>KOG2996|consensus
Probab=99.18 E-value=3e-11 Score=106.61 Aligned_cols=56 Identities=32% Similarity=0.748 Sum_probs=49.6
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeec--CCceEEeeeCCccccccCcceeccc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIP 112 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~ 112 (235)
..++|-|||-+..-.+|+|+.||+|.|+.+. +.|||.|+.+|+.||||++||++..
T Consensus 806 g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 806 GTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 3567788888888899999999999999976 4699999999999999999998754
No 23
>KOG2070|consensus
Probab=99.15 E-value=3.8e-11 Score=104.05 Aligned_cols=58 Identities=45% Similarity=0.772 Sum_probs=54.6
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccC
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~ 113 (235)
...++|.|.|.+...+||+|.+||+|+|.+..++|||+|..+|+.||||++||..+..
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~ 74 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKS 74 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhh
Confidence 3578999999999999999999999999999999999999999999999999998864
No 24
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.15 E-value=1.4e-10 Score=72.41 Aligned_cols=51 Identities=45% Similarity=1.032 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCC-eEEEecCCCeE
Q psy10857 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVE 197 (235)
Q Consensus 147 ~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g-~~G~~P~~~v~ 197 (235)
++++++|.+...++|+|.+||.|.+++....+||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6799999999999999999999999998888999999765 99999999986
No 25
>KOG1118|consensus
Probab=99.13 E-value=3.8e-11 Score=98.52 Aligned_cols=57 Identities=32% Similarity=0.796 Sum_probs=54.1
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
...|+++|||+++..+||.|+.||+|.|+...+.+||.|+..|.+|+||.+||..+.
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV 362 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence 357999999999999999999999999999999999999999999999999999864
No 26
>KOG2199|consensus
Probab=99.13 E-value=1.2e-11 Score=104.67 Aligned_cols=59 Identities=34% Similarity=0.729 Sum_probs=55.1
Q ss_pred CCCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 142 ~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
.....++|||||++.+.+||+|++||+|.|++..+..||+|++++..|+||++||...-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 44578999999999999999999999999999999999999999999999999998754
No 27
>KOG3632|consensus
Probab=99.08 E-value=2.1e-10 Score=106.36 Aligned_cols=112 Identities=29% Similarity=0.534 Sum_probs=91.6
Q ss_pred ceEEEEEeccCCC--------CCCcccccCCCEEEEEEc-cCCCeeeeeeeccceeee----------------------
Q psy10857 4 VIEASVEFDYTAQ--------EADELTLRKGDLITGIRV-QSGGWWEGLLVRERQAVT---------------------- 52 (235)
Q Consensus 4 ~~~~~a~~~~~~~--------~~~eL~~~~Gd~v~v~~~-~~~~W~~~~~~g~~G~v~---------------------- 52 (235)
+-.++|+|||..- .+.||+|++||||.|+.. +.+|.|.|+++|+.|+++
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~ 1217 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGL 1217 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhcc
Confidence 4578999999853 468999999999999975 667999999999999760
Q ss_pred -----------------------CCCCcEEEEeeecCCCCC-------CCccccCCCEEEEEeec-CCceEEeeeCCccc
Q psy10857 53 -----------------------EQPGRRCRVLFSYTPANA-------DELELHVNDVIDVLSEV-EEGWWRGRLRDRTG 101 (235)
Q Consensus 53 -----------------------~~~~~~~~a~~~~~~~~~-------~eLs~~~G~~v~v~~~~-~~~w~~g~~~g~~G 101 (235)
+..+...++.+||.++.. .+|.|..||+|.|..+. ++|+++|+.+|+.|
T Consensus 1218 lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkg 1297 (1335)
T KOG3632|consen 1218 LPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKG 1297 (1335)
T ss_pred CCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccC
Confidence 012345678899998653 46999999999998875 57899999999999
Q ss_pred cccCcceecccCcc
Q psy10857 102 VFPSNFVEEIPAET 115 (235)
Q Consensus 102 ~~P~~~v~~~~~~~ 115 (235)
++|.++++......
T Consensus 1298 lvpsnfle~p~~e~ 1311 (1335)
T KOG3632|consen 1298 LVPSNFLEAPNAEK 1311 (1335)
T ss_pred ccccccccCCCccc
Confidence 99999998775444
No 28
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.07 E-value=4.3e-10 Score=71.19 Aligned_cols=55 Identities=47% Similarity=1.046 Sum_probs=50.4
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeC-CccccccCcceec
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR-DRTGVFPSNFVEE 110 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~-g~~G~~P~~~v~~ 110 (235)
...++|+++|.+..+++|+|.+||.|.++...+.+||.++.. ++.||||.+|++.
T Consensus 2 ~~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 2 GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred CcEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 357899999999999999999999999999988999999975 9999999999875
No 29
>KOG2199|consensus
Probab=99.05 E-value=4.7e-11 Score=101.08 Aligned_cols=59 Identities=34% Similarity=0.729 Sum_probs=54.8
Q ss_pred CCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceeccc
Q psy10857 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112 (235)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~ 112 (235)
...++++|||||.+...+||+|++||+|.|++..+.+||.|.+.+..|+||.+||...-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999997643
No 30
>KOG0162|consensus
Probab=99.04 E-value=2.8e-10 Score=102.93 Aligned_cols=54 Identities=37% Similarity=0.924 Sum_probs=52.2
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEe
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 198 (235)
..|.|+|||.++..+||+|++||+|.++.+...|||.++.+|++||||.+||.+
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 689999999999999999999999999999999999999999999999999975
No 31
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.02 E-value=7.4e-10 Score=69.10 Aligned_cols=51 Identities=45% Similarity=1.032 Sum_probs=47.1
Q ss_pred EEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCC-ccccccCccee
Q psy10857 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVE 109 (235)
Q Consensus 59 ~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g-~~G~~P~~~v~ 109 (235)
++++++|.+..+++|+|.+||.|.+++..+.+||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6799999999999999999999999999888999999855 99999999985
No 32
>KOG1118|consensus
Probab=98.97 E-value=2.5e-10 Score=93.79 Aligned_cols=58 Identities=31% Similarity=0.784 Sum_probs=54.5
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccC
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~ 113 (235)
...|+|+|+|.++.++||.|+.||+|.+..+.+.+||.|+..|..|+||.+||+.+.+
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 4579999999999999999999999999999999999999999999999999988754
No 33
>KOG3601|consensus
Probab=98.90 E-value=4.2e-10 Score=88.02 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=93.0
Q ss_pred eEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeeeccceee---------------------------------
Q psy10857 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV--------------------------------- 51 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v--------------------------------- 51 (235)
..+.+++++....+..+..+.|+.|..+.+...+|+.+..+...|..
T Consensus 59 ~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s 138 (222)
T KOG3601|consen 59 EWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTAS 138 (222)
T ss_pred cceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccc
Confidence 35678899999999999999999999999999999999987766522
Q ss_pred --------------------eCCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecc
Q psy10857 52 --------------------TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 52 --------------------~~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
+........++|+|.++.+.+|.|++|+++.++...+..||.|...|+.|+||++|+-..
T Consensus 139 ~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 139 QSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred cccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 112345678999999999999999999999999999999999999999999999998665
Q ss_pred c
Q psy10857 112 P 112 (235)
Q Consensus 112 ~ 112 (235)
+
T Consensus 219 d 219 (222)
T KOG3601|consen 219 D 219 (222)
T ss_pred c
Confidence 3
No 34
>KOG1264|consensus
Probab=98.85 E-value=1.1e-09 Score=100.13 Aligned_cols=65 Identities=32% Similarity=0.618 Sum_probs=58.1
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCC-eEEEecCCCeEeccCCCccccc
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMTAES 208 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~~~~~~~~ 208 (235)
...++|||||.++.++||+|.++-+|..+++.+.|||+|.++| ..+|||++||++|.......+.
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~~~~~e 839 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTADFEELE 839 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccccccchh
Confidence 4678999999999999999999999999999999999999986 6899999999999876555443
No 35
>KOG0162|consensus
Probab=98.77 E-value=5.4e-09 Score=94.74 Aligned_cols=55 Identities=36% Similarity=0.903 Sum_probs=52.1
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
..|.|+|+|.++..+||+|++||+|.|+.+...|||.|+.+|+.||||.+||.++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 5799999999999999999999999999999999999999999999999999753
No 36
>KOG2546|consensus
Probab=98.76 E-value=2.6e-09 Score=91.37 Aligned_cols=55 Identities=31% Similarity=0.712 Sum_probs=52.2
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
..++++|||.+...+||+|.+|-+|.|+++.++|||+|-.+|.+|+||.|||..+
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPL 478 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccc
Confidence 4678999999999999999999999999999999999999999999999999875
No 37
>KOG2856|consensus
Probab=98.67 E-value=4.4e-09 Score=88.44 Aligned_cols=55 Identities=42% Similarity=0.842 Sum_probs=49.7
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeee-CCCCeEEEEeC-CeEEEecCCCeEec
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLR-DRTGVFPSNFVEEI 199 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~-~~~~w~~~~~~-g~~G~~P~~~v~~~ 199 (235)
..++|||||.++..+||+|+.||.+..+.. ...||..|+++ |+.|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 678999999999999999999999987666 77899999977 99999999999743
No 38
>KOG2856|consensus
Probab=98.52 E-value=2.6e-08 Score=83.82 Aligned_cols=55 Identities=42% Similarity=0.848 Sum_probs=49.4
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeec-CCceEEeeeC-CccccccCcceecc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLR-DRTGVFPSNFVEEI 111 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~-~~~w~~g~~~-g~~G~~P~~~v~~~ 111 (235)
..++|||||.++..+||+|+.||.+..+... ..||+.|+++ |+.|++|++||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 5789999999999999999999999887764 4699999985 99999999999864
No 39
>KOG0515|consensus
Probab=98.47 E-value=5.4e-08 Score=85.61 Aligned_cols=56 Identities=30% Similarity=0.615 Sum_probs=50.8
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeee---CCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~---~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
..+-|+|||+++..+||+|.+||.+.|+++ .+..||+++++|++|++|.+|+-.+.
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 567899999999999999999999999988 55679999999999999999997654
No 40
>KOG2546|consensus
Probab=98.46 E-value=4.2e-08 Score=84.05 Aligned_cols=65 Identities=29% Similarity=0.573 Sum_probs=57.4
Q ss_pred eeeeCCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccC
Q psy10857 49 QAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113 (235)
Q Consensus 49 G~v~~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~ 113 (235)
+|++..-..+++++|||.+..++||+|..|-+|.|+++++++||+|..+|-.|+||.+||+.+..
T Consensus 416 ~w~p~syLEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 416 AWVPTSYLEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLKA 480 (483)
T ss_pred ccccHHHHHHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccccc
Confidence 34444444678999999999999999999999999999999999999999999999999988753
No 41
>KOG1264|consensus
Probab=98.43 E-value=9.8e-08 Score=87.71 Aligned_cols=60 Identities=35% Similarity=0.676 Sum_probs=54.6
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCC-ccccccCcceecccCcc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAET 115 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g-~~G~~P~~~v~~~~~~~ 115 (235)
...++|+|+|.++.++||+|.+|-+|+.+++.+++||.|..+| ..+|||++||+.+..+.
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~ 834 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTAD 834 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcccc
Confidence 4678999999999999999999999999999999999999976 68999999999987643
No 42
>KOG3875|consensus
Probab=98.30 E-value=9.2e-08 Score=78.95 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=48.4
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeee-----CCCCeEEEE-e-CCeEEEecCCCeEeccC
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGR-L-RDRTGVFPSNFVEEIPA 201 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~-----~~~~w~~~~-~-~g~~G~~P~~~v~~~~~ 201 (235)
.+++|+|||.+..+.||+|++||.+.|..+ ....||..+ . ++.+||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 678999999999999999999999998777 345577766 4 56899999999998764
No 43
>KOG1702|consensus
Probab=98.27 E-value=8.8e-07 Score=69.09 Aligned_cols=57 Identities=26% Similarity=0.646 Sum_probs=51.5
Q ss_pred CCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE--eCCeEEEecCCCeEec
Q psy10857 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199 (235)
Q Consensus 143 ~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~ 199 (235)
++..++++|||.++..++++|.-||.|.-++..++||.+++ .+|.+|..|+||++.+
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 35788999999999999999999999988899999999998 5789999999999753
No 44
>KOG1702|consensus
Probab=98.25 E-value=9.9e-07 Score=68.80 Aligned_cols=57 Identities=26% Similarity=0.669 Sum_probs=51.8
Q ss_pred CCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee--CCccccccCcceecc
Q psy10857 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 111 (235)
Q Consensus 55 ~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~ 111 (235)
.+..++|.|||.++..++++|.-||-|.-....++||.+|.+ .|..|+.|++|++.+
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 567899999999999999999999999988888999998885 899999999999753
No 45
>KOG0515|consensus
Probab=98.23 E-value=7.3e-07 Score=78.68 Aligned_cols=58 Identities=26% Similarity=0.534 Sum_probs=51.3
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecC---CceEEeeeCCccccccCcceecccCc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVE---EGWWRGRLRDRTGVFPSNFVEEIPAE 114 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~---~~w~~g~~~g~~G~~P~~~v~~~~~~ 114 (235)
..+-|++||.++..+||+|..||.++|+++.+ ..||.++.+|+.|+||.+|+-.+...
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence 46789999999999999999999999999854 46999999999999999999776543
No 46
>KOG3655|consensus
Probab=98.15 E-value=6.1e-07 Score=78.19 Aligned_cols=56 Identities=36% Similarity=0.837 Sum_probs=51.6
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE-eCCeEEEecCCCeEec
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEI 199 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~ 199 (235)
+..++|+|||++-...+++|..+|.|.++...+.|||.|. .+|..|+||+|||..+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 4568999999999999999999999999999999999999 6889999999999864
No 47
>KOG1843|consensus
Probab=98.14 E-value=1e-06 Score=75.39 Aligned_cols=55 Identities=27% Similarity=0.672 Sum_probs=50.5
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeee--CCCCeEEEEeCCeEEEecCCCeEe
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEE 198 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~ 198 (235)
+..+.++|+|.++.+.+|+|++||+|.++++ ....||.++.++++|+||++||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 4589999999999999999999999999988 456799999999999999999974
No 48
>KOG3655|consensus
Probab=98.09 E-value=1.4e-06 Score=76.05 Aligned_cols=57 Identities=35% Similarity=0.807 Sum_probs=53.1
Q ss_pred CCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee-CCccccccCcceecc
Q psy10857 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEI 111 (235)
Q Consensus 55 ~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~ 111 (235)
.+..++|+|+|.+..+.+++|..++.|.++...+.|||.|.. +|..|+||+|||+.+
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 567889999999999999999999999999999999999996 999999999999865
No 49
>KOG1843|consensus
Probab=98.08 E-value=2.1e-06 Score=73.51 Aligned_cols=55 Identities=27% Similarity=0.689 Sum_probs=50.5
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecC--CceEEeeeCCccccccCcceec
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE--EGWWRGRLRDRTGVFPSNFVEE 110 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~--~~w~~g~~~g~~G~~P~~~v~~ 110 (235)
+..++++|+|.++.+.+|+|++||+|.++.+.+ ..||.++.++++|+||++||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 347899999999999999999999999999875 5799999999999999999964
No 50
>KOG3523|consensus
Probab=98.06 E-value=2.5e-07 Score=82.62 Aligned_cols=62 Identities=35% Similarity=0.670 Sum_probs=55.7
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE--eCCeEEEecCCCeEeccCCCccc
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAETMTA 206 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~~~~~ 206 (235)
.++.+...|.+..+++|++..+|++.|+++..+||++|. .+|..||||.+|++.|.+....+
T Consensus 609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~~r~ 672 (695)
T KOG3523|consen 609 PQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPHTRA 672 (695)
T ss_pred ChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHHHHH
Confidence 578889999999999999999999999999999999998 57899999999999987655443
No 51
>KOG3875|consensus
Probab=97.93 E-value=1.6e-06 Score=71.73 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=50.0
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecC-----CceEEee-e-CCccccccCcceecccCcc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE-----EGWWRGR-L-RDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~-----~~w~~g~-~-~g~~G~~P~~~v~~~~~~~ 115 (235)
...++|+|||.+..+.||+|++||++.|..+.+ ..||... . ++..||||.+||+.+...+
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~ 334 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP 334 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence 367899999999999999999999999987643 3477666 4 6689999999999987744
No 52
>KOG3523|consensus
Probab=97.77 E-value=4.1e-06 Score=75.10 Aligned_cols=59 Identities=36% Similarity=0.695 Sum_probs=53.5
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee--CCccccccCcceecccCcc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~~ 115 (235)
.++.+...|.+..+++|++..+|++.|+++..+||++|.. +|..||||..|++.+....
T Consensus 609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 609 PQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred ChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence 3567888999999999999999999999999999999995 8999999999999986654
No 53
>KOG4278|consensus
Probab=97.74 E-value=3.8e-05 Score=69.95 Aligned_cols=57 Identities=18% Similarity=0.420 Sum_probs=49.0
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeee-CCCCeEEEEe-CCeEEEecCCCeEeccC
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRL-RDRTGVFPSNFVEEIPA 201 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~-~~~~w~~~~~-~g~~G~~P~~~v~~~~~ 201 (235)
+..++|||||.+...+.|++.+|+.+.|+.- .+..|.+.+. +|+ ||+|+||+.++..
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence 3578999999999999999999999999988 4556888884 555 9999999988753
No 54
>KOG3725|consensus
Probab=97.64 E-value=1.4e-05 Score=64.65 Aligned_cols=56 Identities=30% Similarity=0.634 Sum_probs=50.1
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeee--CCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
...++++|||++..+.||++-..++|.|..- .+.+|..++.+++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 4678999999999999999999999998766 6778999999999999999998753
No 55
>KOG2222|consensus
Probab=97.61 E-value=1e-05 Score=70.93 Aligned_cols=60 Identities=33% Similarity=0.659 Sum_probs=54.1
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCcc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~ 115 (235)
..+++|+.||....+++|.|++.|+|+++...+...|.|+.+|-+||||+.||+.++...
T Consensus 548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~ 607 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERG 607 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhcc
Confidence 356789999999999999999999999999989999999999999999999998775443
No 56
>KOG4773|consensus
Probab=97.45 E-value=1.2e-05 Score=67.63 Aligned_cols=165 Identities=24% Similarity=0.360 Sum_probs=105.4
Q ss_pred CcccccCCCEEEEEEccCCCeeeeeeeccceee-----------------------------eCCCCcEEEEeeecCCCC
Q psy10857 19 DELTLRKGDLITGIRVQSGGWWEGLLVRERQAV-----------------------------TEQPGRRCRVLFSYTPAN 69 (235)
Q Consensus 19 ~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v-----------------------------~~~~~~~~~a~~~~~~~~ 69 (235)
.+++|.+ +-|.|++ -.|+.+. +|.| -..+...+.+.+||.++.
T Consensus 31 ke~~f~~-hFvyVie---vkw~~~s----e~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfkqe~ 102 (386)
T KOG4773|consen 31 KERSFTS-HFVYVIE---VKWYGGS----EGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFKQEI 102 (386)
T ss_pred Hhcccch-heEEEEE---ehhhccc----cceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechhhhh
Confidence 6778888 8888884 4566554 4443 012345678888888877
Q ss_pred CCCccccCCCEEEEEeecCCceEEee---eCCccccccCcceecccCcccccccccccCCCC---CCCCccccccccC-C
Q psy10857 70 ADELELHVNDVIDVLSEVEEGWWRGR---LRDRTGVFPSNFVEEIPAETMTAESRHRKESNN---NEADPAKALAATI-E 142 (235)
Q Consensus 70 ~~eLs~~~G~~v~v~~~~~~~w~~g~---~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~ 142 (235)
++++.-... ++ ..|+... .-|..|++|..|+.+++.... +....+.-|.+ .+..-.+...-+. .
T Consensus 103 Ae~r~~~ln----~y----~e~LlslPi~~l~~p~l~~fffvsp~D~~dV-peai~r~~Prt~~~ks~~~skasni~~~~ 173 (386)
T KOG4773|consen 103 AEERIPALN----AY----CEWLLSLPIGRLGGPGLRPFFFVSPYDSEDV-PEAIRRLRPRTRKWKSDGVSKASNIVLGM 173 (386)
T ss_pred hhhhhHHHH----HH----HHHHHhcchhhcCCCCceeeeeeccchHhhh-hHHHHhcCchhhhccccccCccccccchh
Confidence 776432221 10 2344333 355678999999988874331 11111111100 0000000000000 0
Q ss_pred CCcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEecc
Q psy10857 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 143 ~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 200 (235)
...++.+++||.+....||.|..||++.++.+.+.+||.|+.++..||+|.+|+..+.
T Consensus 174 ~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 174 AAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLD 231 (386)
T ss_pred hhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhc
Confidence 1246788999999999999999999999999999999999999999999999999884
No 57
>KOG4278|consensus
Probab=97.42 E-value=0.00022 Score=65.23 Aligned_cols=59 Identities=17% Similarity=0.403 Sum_probs=50.0
Q ss_pred CCCcEEEEeeecCCCCCCCccccCCCEEEEEeec-CCceEEeee-CCccccccCcceecccC
Q psy10857 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEIPA 113 (235)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~-~~~w~~g~~-~g~~G~~P~~~v~~~~~ 113 (235)
.....++|||||.+..+..|++.+||.+.|+.-. ++.|.+.+. +|+ ||+|+||+.++..
T Consensus 88 ndpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 88 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred CCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence 3455789999999999999999999999999876 456888886 555 9999999987654
No 58
>KOG4773|consensus
Probab=97.42 E-value=1.7e-05 Score=66.73 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=53.8
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCcc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~ 115 (235)
..+.++++|.+....||.|.+|+++.++.+++.+||.|++++.+||+|.+|++.++.-.
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fp 234 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFP 234 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCc
Confidence 45678999999999999999999999999999999999999999999999999885433
No 59
>KOG2528|consensus
Probab=97.42 E-value=8.7e-05 Score=64.53 Aligned_cols=55 Identities=31% Similarity=0.698 Sum_probs=50.6
Q ss_pred EEEEEeecCCCCCCcccccCCCEEEEeee-CCCCeEEEE-eCCeEEEecCCCeEecc
Q psy10857 146 RCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGR-LRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 146 ~~~al~dy~~~~~~eLs~~~gd~v~v~~~-~~~~w~~~~-~~g~~G~~P~~~v~~~~ 200 (235)
.++++|||.++...+|+...||++.++.. ...|||.+. .+|.+|+||+.||+.+.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 57899999999999999999999998877 778999998 89999999999999876
No 60
>KOG3557|consensus
Probab=97.23 E-value=0.00019 Score=65.07 Aligned_cols=62 Identities=26% Similarity=0.585 Sum_probs=53.1
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE-eCCeEEEecCCCeEeccCCCccc
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAETMTA 206 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~~~ 206 (235)
...+.++|||.++...||++.+||++.|+.. ...||+++ -.|+.|++|.+.+..+.......
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~ 562 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEHTGE 562 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCccccc
Confidence 3578999999999999999999999998764 44799999 56899999999999987665544
No 61
>KOG2528|consensus
Probab=97.09 E-value=0.00041 Score=60.41 Aligned_cols=59 Identities=27% Similarity=0.602 Sum_probs=51.8
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeec-CCceEEeee-CCccccccCcceecccCcc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~-~~~w~~g~~-~g~~G~~P~~~v~~~~~~~ 115 (235)
..++++|||..+...+++...||++.+.... ..+||.+.. .|..|.||+.||+.+....
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~ 63 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAV 63 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeecccc
Confidence 3578999999999999999999999998865 579999996 9999999999999887443
No 62
>KOG3775|consensus
Probab=97.07 E-value=0.0003 Score=60.01 Aligned_cols=57 Identities=30% Similarity=0.656 Sum_probs=50.7
Q ss_pred EEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE--eCCeEEEecCCCeEeccCC
Q psy10857 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 146 ~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~ 202 (235)
.-++++.|.++.++||-|.+||-|.|-...++-|.+|. .+|++|+||+.|+..++..
T Consensus 264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 34788899999999999999999999888888899997 5799999999999998754
No 63
>KOG0197|consensus
Probab=97.01 E-value=0.00019 Score=63.75 Aligned_cols=56 Identities=27% Similarity=0.593 Sum_probs=49.7
Q ss_pred CcEEEEEeecCCCCCCcccccCCCE-EEEeeeCCCCeEEEE--eCCeEEEecCCCeEec
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDV-IDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~-v~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~ 199 (235)
...++++|||.+..+.+|+|.+||+ ..+++..+..||+.+ ..+..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3578999999999999999999999 777788889999987 3689999999999875
No 64
>KOG2222|consensus
Probab=96.98 E-value=0.00022 Score=62.76 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=45.9
Q ss_pred eEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeeeccceeeeC
Q psy10857 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTE 53 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v~~ 53 (235)
..|+|+.||....++||-|+++|||.|+.+.|+.-|.|+++|-+||++.
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpa 597 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPA 597 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchH
Confidence 4688999999999999999999999999999999999999999999854
No 65
>KOG4575|consensus
Probab=96.91 E-value=0.0015 Score=59.29 Aligned_cols=62 Identities=26% Similarity=0.500 Sum_probs=50.9
Q ss_pred CCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee--CCccccccCcceecccCc
Q psy10857 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPAE 114 (235)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~ 114 (235)
...+..++|+|.+.++.+++|.|..||++.++...++.||-+.+ ....|+||.+||..++..
T Consensus 5 ~q~p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~r 68 (874)
T KOG4575|consen 5 KQLPCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDKR 68 (874)
T ss_pred cCCCceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecccc
Confidence 45667899999999999999999999999999886666666654 457899999999666543
No 66
>KOG1451|consensus
Probab=96.88 E-value=0.0011 Score=59.76 Aligned_cols=56 Identities=34% Similarity=0.702 Sum_probs=48.1
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEE-EeeeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVID-VLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~-v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
...+.++|.-.+....+++|..|.++. |.....+||..|+++|++|++|.|||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 356778888888888999999999986 55568899999999999999999999753
No 67
>KOG3725|consensus
Probab=96.86 E-value=0.0004 Score=56.41 Aligned_cols=56 Identities=30% Similarity=0.614 Sum_probs=50.6
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeec--CCceEEeeeCCccccccCcceecc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
.+.++++|||++..+.||++-..++|.|..-. +.+|..|+.+++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 46899999999999999999999999998865 568999999999999999998764
No 68
>KOG3771|consensus
Probab=96.84 E-value=0.0014 Score=57.73 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=46.4
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeee-CCCCeEEEEeCCeEEEecCCCeE
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVE 197 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~-~~~~w~~~~~~g~~G~~P~~~v~ 197 (235)
..++.++|||.++..++|+|..||+|.|+.. ....||.|++.|..+-+|.+|+.
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 4678999999999999999999999999877 56679999988877777777765
No 69
>KOG3557|consensus
Probab=96.80 E-value=0.00048 Score=62.58 Aligned_cols=59 Identities=27% Similarity=0.632 Sum_probs=51.4
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee-CCccccccCcceecccCcc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~~~~~ 115 (235)
...++++|||.+....||++.+||++.|+.. ...||.++. .|+.|++|.+.+..+....
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~ 559 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEH 559 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCcc
Confidence 4578899999999999999999999988774 567999986 8999999999998876654
No 70
>KOG4429|consensus
Probab=96.72 E-value=0.00055 Score=56.63 Aligned_cols=55 Identities=25% Similarity=0.275 Sum_probs=50.5
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEec
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 199 (235)
..|.++|.|.+...++|...+|+++.+.++...|||.|+..|..|-||+.|+++.
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 4688999999999999999999999998889999999999999999999988754
No 71
>KOG3775|consensus
Probab=96.69 E-value=0.0011 Score=56.66 Aligned_cols=59 Identities=29% Similarity=0.638 Sum_probs=52.4
Q ss_pred cEEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeee--CCccccccCcceecccCcc
Q psy10857 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~~ 115 (235)
..-++++.|.+..++||.+..||.|.|....++-|.+|.+ .|++|+||+.|+-.++...
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e 323 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE 323 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence 3457899999999999999999999998888888999985 8999999999998887654
No 72
>KOG4575|consensus
Probab=96.60 E-value=0.0029 Score=57.52 Aligned_cols=56 Identities=29% Similarity=0.505 Sum_probs=45.3
Q ss_pred CcEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE-eC--CeEEEecCCCeEecc
Q psy10857 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LR--DRTGVFPSNFVEEIP 200 (235)
Q Consensus 144 ~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~-~~--g~~G~~P~~~v~~~~ 200 (235)
+..++|+|-+.++..++|.|..||+|.++.-.+ |||++. ++ ...|+||+|||.-++
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeecccccccCcccceeecc
Confidence 467899999999999999999999999976555 555554 43 468999999996554
No 73
>KOG3771|consensus
Probab=96.58 E-value=0.001 Score=58.57 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=40.0
Q ss_pred ceEEEEEeccCCCCCCcccccCCCEEEEEEc-cCCCeeeeeeeccce
Q psy10857 4 VIEASVEFDYTAQEADELTLRKGDLITGIRV-QSGGWWEGLLVRERQ 49 (235)
Q Consensus 4 ~~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~-~~~~W~~~~~~g~~G 49 (235)
+...+++|||.+...+||+|..||+|.|+.. +.++||.|.+.|..+
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke 446 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKE 446 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcc
Confidence 4578999999999999999999999999985 556899998887654
No 74
>KOG0609|consensus
Probab=96.47 E-value=0.0014 Score=58.67 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=39.8
Q ss_pred eEEEEEeccCCCCCCcc-------cccCCCEEEEEEccCCCeeeeeeec-----cceee
Q psy10857 5 IEASVEFDYTAQEADEL-------TLRKGDLITGIRVQSGGWWEGLLVR-----ERQAV 51 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL-------~~~~Gd~v~v~~~~~~~W~~~~~~g-----~~G~v 51 (235)
+.++|+|||....++-+ +|++|||+.|+.++|..||.+...| ..|++
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLi 273 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLI 273 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccc
Confidence 67899999999887665 7999999999999999999997654 35665
No 75
>KOG0609|consensus
Probab=96.45 E-value=0.0012 Score=58.92 Aligned_cols=54 Identities=30% Similarity=0.669 Sum_probs=45.0
Q ss_pred cEEEEeeecCCCCCC-------CccccCCCEEEEEeecCCceEEeeeC-----CccccccCcceec
Q psy10857 57 RRCRVLFSYTPANAD-------ELELHVNDVIDVLSEVEEGWWRGRLR-----DRTGVFPSNFVEE 110 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~-------eLs~~~G~~v~v~~~~~~~w~~g~~~-----g~~G~~P~~~v~~ 110 (235)
.+++|+|||++..+. .|.|.+||++.|+.+.+..||.++.- +..|.+|+..++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 578899999987654 48999999999999999999999863 4679999876543
No 76
>KOG0197|consensus
Probab=96.44 E-value=0.0016 Score=58.07 Aligned_cols=56 Identities=27% Similarity=0.590 Sum_probs=49.2
Q ss_pred CcEEEEeeecCCCCCCCccccCCCE-EEEEeecCCceEEeee--CCccccccCcceecc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDV-IDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 111 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~-v~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~ 111 (235)
...++|+|+|.+..+.+|+|.+|++ ..+++..+..||..+. .+..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3578999999999999999999999 7777777789999874 789999999999865
No 77
>KOG1451|consensus
Probab=96.36 E-value=0.0044 Score=56.05 Aligned_cols=56 Identities=32% Similarity=0.667 Sum_probs=48.2
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEe-ecCCceEEeeeCCccccccCcceecc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~-~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
...+.++|.-.+....+++|..|.++.-.. ...+||..|+.+|+.|++|.+||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 456778888888889999999999987555 55789999999999999999999864
No 78
>KOG3565|consensus
Probab=96.19 E-value=0.00046 Score=64.08 Aligned_cols=59 Identities=20% Similarity=0.582 Sum_probs=52.0
Q ss_pred CCCcEEEEEeecCCCCCCcccccCCCEEEEeee-CCCCeEEEE--eCCeEEEecCCCeEecc
Q psy10857 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGR--LRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 142 ~~~~~~~al~dy~~~~~~eLs~~~gd~v~v~~~-~~~~w~~~~--~~g~~G~~P~~~v~~~~ 200 (235)
++...+.++|.|.++.++++++..|+++.+++. ..+||=+++ ..+..|+||.+|++.+.
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 446789999999999999999999999998877 777898888 77899999999998754
No 79
>KOG4429|consensus
Probab=96.18 E-value=0.002 Score=53.38 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=49.9
Q ss_pred EEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecc
Q psy10857 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 58 ~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
.|.+.|.|.+..+++|...+|+++.+-++...+||.|+..|..|-||+.+++..
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 578999999999999999999999998888999999999999999999998764
No 80
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.56 E-value=0.018 Score=39.19 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCcccccCCCEEEEeeeCCCCeEEEE-eCCeEEEecCCCeEeccCC
Q psy10857 157 NADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 157 ~~~eLs~~~gd~v~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~ 202 (235)
...+|.+.+|+.+.|++..+..-|.|+ ..|+-|++|.+++..++.+
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~~ 75 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDGE 75 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS------
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCCc
Confidence 346899999999999999999999999 7899999999999776543
No 81
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=95.50 E-value=0.042 Score=33.95 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=29.7
Q ss_pred cccCCCEEEEeeeCCCC-eEEE-EeCCeEEEecCCCeE
Q psy10857 162 ELHVNDVIDVLSEVEEG-WWRG-RLRDRTGVFPSNFVE 197 (235)
Q Consensus 162 s~~~gd~v~v~~~~~~~-w~~~-~~~g~~G~~P~~~v~ 197 (235)
.+..|+.|.++.....+ |++. ..++..||++..||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46788999998886655 9999 589999999999985
No 82
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=94.90 E-value=0.03 Score=38.10 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=29.9
Q ss_pred CCCccccCCCEEEEEeecCCceEEeee-CCccccccCcceecccC
Q psy10857 70 ADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIPA 113 (235)
Q Consensus 70 ~~eLs~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~~~ 113 (235)
..+|.+..||.+.|++..+..-|.++. .|+.|++|.+++-....
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~ 74 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDG 74 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-----
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCC
Confidence 467999999999999998888889987 99999999999865543
No 83
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.99 E-value=0.12 Score=32.68 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.7
Q ss_pred ccccCCCEEEEeeeCCCCeEEEEeC-CeEEEecCCCeE
Q psy10857 161 LELHVNDVIDVLSEVEEGWWRGRLR-DRTGVFPSNFVE 197 (235)
Q Consensus 161 Ls~~~gd~v~v~~~~~~~w~~~~~~-g~~G~~P~~~v~ 197 (235)
-.+..|+.+.++.....+|.+.+.. |..||++..++.
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 3467899999988765589999965 899999887664
No 84
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.94 E-value=0.099 Score=32.24 Aligned_cols=36 Identities=28% Similarity=0.634 Sum_probs=29.4
Q ss_pred cccCCCEEEEEeecCCc-eEEee-eCCccccccCccee
Q psy10857 74 ELHVNDVIDVLSEVEEG-WWRGR-LRDRTGVFPSNFVE 109 (235)
Q Consensus 74 s~~~G~~v~v~~~~~~~-w~~g~-~~g~~G~~P~~~v~ 109 (235)
.+..|+.|.++.....+ |++.+ .+|..||++..||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 56789999999987655 99994 58899999999874
No 85
>KOG0199|consensus
Probab=93.31 E-value=0.11 Score=48.77 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=42.6
Q ss_pred EEEeeecCCCCCCCccccCCCEEEEEeecC-CceEEeee--CCccccccCccee
Q psy10857 59 CRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRL--RDRTGVFPSNFVE 109 (235)
Q Consensus 59 ~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~-~~w~~g~~--~g~~G~~P~~~v~ 109 (235)
++|..+|+...++.|.|.+||.|.|++... +-||+|.. +++.|.||.+-|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 456677788889999999999999999765 45999964 7899999998876
No 86
>KOG3565|consensus
Probab=92.74 E-value=0.037 Score=51.71 Aligned_cols=59 Identities=20% Similarity=0.577 Sum_probs=51.0
Q ss_pred CCCcEEEEeeecCCCCCCCccccCCCEEEEEeec-CCceEEee--eCCccccccCcceeccc
Q psy10857 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGR--LRDRTGVFPSNFVEEIP 112 (235)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~-~~~w~~g~--~~g~~G~~P~~~v~~~~ 112 (235)
.+...+.++|.|.++.++.+++..|+++.+++.. .+||-+++ .++..|+||.+|++...
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 3456789999999999999999999999998875 57898888 68899999999997653
No 87
>KOG0199|consensus
Probab=92.48 E-value=0.15 Score=47.86 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=41.8
Q ss_pred EEEEeecCCCCCCcccccCCCEEEEeeeCC-CCeEEEE--eCCeEEEecCCCeEe
Q psy10857 147 CRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGR--LRDRTGVFPSNFVEE 198 (235)
Q Consensus 147 ~~al~dy~~~~~~eLs~~~gd~v~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~ 198 (235)
.++..+|+...++.|.|++||.|.|++... .-||.|. .+++.|.||.+-|..
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 455556667789999999999999987743 4689986 577999999998873
No 88
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.40 E-value=0.35 Score=29.89 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred cccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCe
Q psy10857 160 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 196 (235)
Q Consensus 160 eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v 196 (235)
-..+..|..+.|. ....+|.+.+.+|..||++...|
T Consensus 18 v~~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence 3556778888886 56668999999999999998765
No 89
>KOG3812|consensus
Probab=92.05 E-value=0.088 Score=44.86 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=40.6
Q ss_pred cEEEEeeecCCCCCCC-------ccccCCCEEEEEeecCCceEEeee---CCccccccCc
Q psy10857 57 RRCRVLFSYTPANADE-------LELHVNDVIDVLSEVEEGWWRGRL---RDRTGVFPSN 106 (235)
Q Consensus 57 ~~~~a~~~~~~~~~~e-------Ls~~~G~~v~v~~~~~~~w~~g~~---~g~~G~~P~~ 106 (235)
.-+++..+|.+..+++ ++|...|.+.|-++.+++||-|+. ....||+|..
T Consensus 59 FAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 59 FAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred EEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence 4456667888876554 899999999999999999999985 5578999974
No 90
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=91.86 E-value=0.27 Score=31.09 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.6
Q ss_pred ccccCCCEEEEEeecCCceEEeee-CCccccccCccee
Q psy10857 73 LELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVE 109 (235)
Q Consensus 73 Ls~~~G~~v~v~~~~~~~w~~g~~-~g~~G~~P~~~v~ 109 (235)
-.+..|+.+.++.....+|.+... +|..||++..++.
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 347789999999876558999987 5999999876653
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.82 E-value=0.21 Score=40.12 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=33.2
Q ss_pred ccccCCCEEEEeeeCC-CCeEEEE-eCCeEEEecCCCeEecc
Q psy10857 161 LELHVNDVIDVLSEVE-EGWWRGR-LRDRTGVFPSNFVEEIP 200 (235)
Q Consensus 161 Ls~~~gd~v~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~ 200 (235)
-.+..|+.|.|++..+ .+|.+.+ .+|++||++..|+....
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 3577899999998765 6899998 68899999999997654
No 92
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=90.73 E-value=0.52 Score=42.52 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=33.2
Q ss_pred ccccCCCEEEEeeeCCCCeEEEEe-CCeEEEecCCCeEecc
Q psy10857 161 LELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFVEEIP 200 (235)
Q Consensus 161 Ls~~~gd~v~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~ 200 (235)
-++..|+.|.|+.....||++.++ +|+.||+-..||..-.
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~~ 143 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDKV 143 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCCC
Confidence 357889999997656779999998 5899999999998643
No 93
>KOG0040|consensus
Probab=90.56 E-value=0.0065 Score=60.26 Aligned_cols=58 Identities=22% Similarity=0.636 Sum_probs=53.0
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEeccCC
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 202 (235)
..+.++|||...++.+.+.++||+..++...+..||.+++..+.|++|..||+.+.+.
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 4567899999999999999999999988889999999999999999999999987655
No 94
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=90.49 E-value=0.55 Score=37.60 Aligned_cols=88 Identities=11% Similarity=0.204 Sum_probs=58.4
Q ss_pred cccCCCEEEEEEccCC-Ceeeeeee-ccceeeeCCCCc--------------EEEEeeecCCCCCCCccccCCCEEEEEe
Q psy10857 22 TLRKGDLITGIRVQSG-GWWEGLLV-RERQAVTEQPGR--------------RCRVLFSYTPANADELELHVNDVIDVLS 85 (235)
Q Consensus 22 ~~~~Gd~v~v~~~~~~-~W~~~~~~-g~~G~v~~~~~~--------------~~~a~~~~~~~~~~eLs~~~G~~v~v~~ 85 (235)
++++||.|.|+..... +|..+... |+.|+|...... +++.+-+-.+.- .=.++.|..+.+..
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~~~~nVr~~t~t~~~v--~g~~~~~t~~~~~s 126 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPDLELNVRELTKTLSNV--DGTWKQGTAVMQIS 126 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccceecCchhhhhhhcccchhhh--hhhhhcCcEEEEEe
Confidence 6899999999987544 79999876 888988432111 111111111110 12456788888888
Q ss_pred ecCCceEEeeeCCccccccCcceecc
Q psy10857 86 EVEEGWWRGRLRDRTGVFPSNFVEEI 111 (235)
Q Consensus 86 ~~~~~w~~g~~~g~~G~~P~~~v~~~ 111 (235)
....+|......++.|++-..|+..-
T Consensus 127 k~~~~w~~~~~~~k~~~vs~q~~~~~ 152 (205)
T COG3103 127 KTQNNWYIITLKGKNGYVSGQLVTAQ 152 (205)
T ss_pred eccccchhhhhhcccchhhhhheecc
Confidence 77788988888999999877776543
No 95
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=89.46 E-value=0.59 Score=28.82 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=28.6
Q ss_pred ccccCCCEEEEEeecCCceEEeeeCCccccccCcce
Q psy10857 73 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108 (235)
Q Consensus 73 Ls~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v 108 (235)
..+..|..+.+.+ ...+|.+.+.+|..||++...|
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence 4567888888874 4778999999999999988765
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.16 E-value=0.45 Score=38.22 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=32.5
Q ss_pred cccCCCEEEEEeecC-CceEEeee-CCccccccCcceeccc
Q psy10857 74 ELHVNDVIDVLSEVE-EGWWRGRL-RDRTGVFPSNFVEEIP 112 (235)
Q Consensus 74 s~~~G~~v~v~~~~~-~~w~~g~~-~g~~G~~P~~~v~~~~ 112 (235)
.+..|+.|.++...+ .+|.+.+. +|+.||++..|+....
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 577899999998765 68999985 8899999999987543
No 97
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=89.05 E-value=0.52 Score=37.73 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=65.4
Q ss_pred cccCCCEEEEEeecCC-ceEEeee-CCccccccCcceecccCcccccccccccCCCCCCCCccccccccCCCCcEEEEEe
Q psy10857 74 ELHVNDVIDVLSEVEE-GWWRGRL-RDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLF 151 (235)
Q Consensus 74 s~~~G~~v~v~~~~~~-~w~~g~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 151 (235)
+++.||.+.|+..... +|.+... +|+.|||+..++..-..... ..| . ....++.+-
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~-------~~p-------------~--~~~nVr~~t 106 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNE-------RVP-------------D--LELNVRELT 106 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccce-------ecC-------------c--hhhhhhhcc
Confidence 6789999999998654 7988886 88999999988754433210 000 0 001111111
Q ss_pred ecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEe
Q psy10857 152 SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198 (235)
Q Consensus 152 dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~ 198 (235)
.-.++ -.=.++.|..+.+..+...+|....+.++.|++-..|+..
T Consensus 107 ~t~~~--v~g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~ 151 (205)
T COG3103 107 KTLSN--VDGTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTA 151 (205)
T ss_pred cchhh--hhhhhhcCcEEEEEeeccccchhhhhhcccchhhhhheec
Confidence 10011 1223567778888777878999999999999988887764
No 98
>KOG3812|consensus
Probab=88.92 E-value=0.19 Score=42.87 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=37.6
Q ss_pred EEEEeecCCCCCC-------cccccCCCEEEEeeeCCCCeEEEE---eCCeEEEecC
Q psy10857 147 CRVLFSYTPANAD-------ELELHVNDVIDVLSEVEEGWWRGR---LRDRTGVFPS 193 (235)
Q Consensus 147 ~~al~dy~~~~~~-------eLs~~~gd~v~v~~~~~~~w~~~~---~~g~~G~~P~ 193 (235)
+++..+|.+.-.+ .++|...|.+.|-++-+++||.|+ .++..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 4556677766433 689999999999999999999998 3557899998
No 99
>KOG3705|consensus
Probab=87.25 E-value=0.64 Score=40.70 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=42.8
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeCCCCeEEEE--eCCeEEEecCCCeEe
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 198 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~ 198 (235)
...+++++..++..+++.++.||.|-|-...=+|.-+|+ ..++.|+||+.-|++
T Consensus 510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 346889999999999999999999988655444555554 456899999987765
No 100
>KOG0040|consensus
Probab=85.09 E-value=0.034 Score=55.49 Aligned_cols=57 Identities=23% Similarity=0.645 Sum_probs=51.9
Q ss_pred EEEEeeecCCCCCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCc
Q psy10857 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114 (235)
Q Consensus 58 ~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~ 114 (235)
.+.++|+|...++.+.+.++||+++.+...+..||.+++..+.|++|+.|++.+...
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 456899999999999999999999998888899999999999999999999987665
No 101
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=84.10 E-value=1.2 Score=29.42 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=19.9
Q ss_pred cccccCCCEEEEEEcc------CCCeeeeee
Q psy10857 20 ELTLRKGDLITGIRVQ------SGGWWEGLL 44 (235)
Q Consensus 20 eL~~~~Gd~v~v~~~~------~~~W~~~~~ 44 (235)
-|++++||.|.|-... +.+||-|+.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 4789999999987543 569999974
No 102
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=83.07 E-value=1.7 Score=27.28 Aligned_cols=24 Identities=25% Similarity=0.754 Sum_probs=20.8
Q ss_pred cccCCCEEEEEEccCCCeeeeeee
Q psy10857 22 TLRKGDLITGIRVQSGGWWEGLLV 45 (235)
Q Consensus 22 ~~~~Gd~v~v~~~~~~~W~~~~~~ 45 (235)
.|+.|+.|.+....++.||.+..-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 488999999998888999998754
No 103
>KOG3580|consensus
Probab=80.01 E-value=2.4 Score=39.25 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=39.6
Q ss_pred CcEEEEeeecCCCCCCCccccCCCEEEEEeecC----CceEEeeeCC-----ccccccCc
Q psy10857 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE----EGWWRGRLRD-----RTGVFPSN 106 (235)
Q Consensus 56 ~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~----~~w~~g~~~g-----~~G~~P~~ 106 (235)
..+.+..|.+....+.-|.|.+|+++.++...- ..|+..+++. ..|++|..
T Consensus 504 SFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 504 SFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred eeEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 356778889999999999999999999887542 4477777633 57999864
No 104
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=79.55 E-value=2.2 Score=38.61 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=26.4
Q ss_pred cccCCCEEEEEEccCCCeeeeeee-ccceee
Q psy10857 22 TLRKGDLITGIRVQSGGWWEGLLV-RERQAV 51 (235)
Q Consensus 22 ~~~~Gd~v~v~~~~~~~W~~~~~~-g~~G~v 51 (235)
++.+|+.|.|+...+.+|+.++.+ |+.|||
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV 134 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFV 134 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEE
Confidence 688999999986567899999986 999998
No 105
>KOG3705|consensus
Probab=79.42 E-value=3.7 Score=36.18 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCCceEEEEEeccCCCCCCcccccCCCEEEEEEccCCCeeeeeee--ccceeeeC
Q psy10857 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV--RERQAVTE 53 (235)
Q Consensus 1 ~~~~~~~~a~~~~~~~~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~--g~~G~v~~ 53 (235)
|-.....+|++++.+.+.+||.++.||+|-|-...=+|.-.|.+. ++.|+++.
T Consensus 506 GQnAHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPS 560 (580)
T KOG3705|consen 506 GQNAHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPS 560 (580)
T ss_pred CccccceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCcc
Confidence 445677899999999999999999999999654322232333332 45677754
No 106
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.36 E-value=7.2 Score=29.55 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=52.7
Q ss_pred ccccCCCEEEEEeecCCceEEee-eCCccccccCcceecccCcccccccccccCCCCCCCCccccccccCCCCcEEEEEe
Q psy10857 73 LELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLF 151 (235)
Q Consensus 73 Ls~~~G~~v~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 151 (235)
+.+++|.-+.|+.+.+ .|-+.+ .+|..||+-.+.+.--...-.. |=+........|.
T Consensus 59 ~y~k~GlPVEIvqEy~-~WRrirDadG~egWv~qsllsG~Rtai~a---------------------pw~~~kg~~i~l~ 116 (171)
T COG3807 59 VYLKKGLPVEIVQEYD-NWRRIRDADGTEGWVHQSLLSGKRTAIIA---------------------PWMRDKGVEINLR 116 (171)
T ss_pred eeeccCCceehhhhhh-hhhheeCCCCCceeeeeecccCcceEEec---------------------ccccCcceeEEEe
Confidence 4567788888877644 465555 4899999876665432221100 0000001112221
Q ss_pred -ecCCCCCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecC
Q psy10857 152 -SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 193 (235)
Q Consensus 152 -dy~~~~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~ 193 (235)
+-+....----++.| ++.-+.+++.+|.+.++.|.+||+-.
T Consensus 117 k~~~~~a~V~A~lepg-v~~sl~~C~g~wC~~~~~g~~GWi~q 158 (171)
T COG3807 117 KSADDGARVVAKLEPG-VVGSLKKCKGQWCRLTAKGYSGWISQ 158 (171)
T ss_pred eCCCCCCeEEEEecCc-eEEEecccccceEEEEccCccceeec
Confidence 111111112234444 34456788999999999999999754
No 107
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=70.11 E-value=6.5 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.800 Sum_probs=19.8
Q ss_pred cccCCCEEEEeeeCCCCeEEEEe
Q psy10857 162 ELHVNDVIDVLSEVEEGWWRGRL 184 (235)
Q Consensus 162 s~~~gd~v~v~~~~~~~w~~~~~ 184 (235)
.|++|+.|.+....++.||.++.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 57899999998877889999974
No 108
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.25 E-value=18 Score=27.43 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred cccCCCEEEEEEccCCCeeeee-eeccceeeeCC--CCcE-------------EEEeeecCCCCCCC-ccccCCCEEEEE
Q psy10857 22 TLRKGDLITGIRVQSGGWWEGL-LVRERQAVTEQ--PGRR-------------CRVLFSYTPANADE-LELHVNDVIDVL 84 (235)
Q Consensus 22 ~~~~Gd~v~v~~~~~~~W~~~~-~~g~~G~v~~~--~~~~-------------~~a~~~~~~~~~~e-Ls~~~G~~v~v~ 84 (235)
-+++|.=|.|+..- ++|=+++ .+|..|+|... .+.+ .+.+..-......- -.+..| ++--+
T Consensus 60 y~k~GlPVEIvqEy-~~WRrirDadG~egWv~qsllsG~Rtai~apw~~~kg~~i~l~k~~~~~a~V~A~lepg-v~~sl 137 (171)
T COG3807 60 YLKKGLPVEIVQEY-DNWRRIRDADGTEGWVHQSLLSGKRTAIIAPWMRDKGVEINLRKSADDGARVVAKLEPG-VVGSL 137 (171)
T ss_pred eeccCCceehhhhh-hhhhheeCCCCCceeeeeecccCcceEEecccccCcceeEEEeeCCCCCCeEEEEecCc-eEEEe
Confidence 46788888887743 5676665 45777877321 1111 11111111111111 122233 33445
Q ss_pred eecCCceEEeeeCCccccccCc
Q psy10857 85 SEVEEGWWRGRLRDRTGVFPSN 106 (235)
Q Consensus 85 ~~~~~~w~~g~~~g~~G~~P~~ 106 (235)
.+.+.+|++.+..|..||+-..
T Consensus 138 ~~C~g~wC~~~~~g~~GWi~q~ 159 (171)
T COG3807 138 KKCKGQWCRLTAKGYSGWISQG 159 (171)
T ss_pred cccccceEEEEccCccceeecc
Confidence 6678899999999999998543
No 109
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=64.93 E-value=21 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=23.3
Q ss_pred cccccCCCEEEEeee-CCCCeEEEEeCCeEEEecC
Q psy10857 160 ELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPS 193 (235)
Q Consensus 160 eLs~~~gd~v~v~~~-~~~~w~~~~~~g~~G~~P~ 193 (235)
+=.+..|+-|.|++. .+..|..++.....||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 345667888888877 6666999999889999874
No 110
>KOG4384|consensus
Probab=64.51 E-value=3.8 Score=35.29 Aligned_cols=63 Identities=30% Similarity=0.595 Sum_probs=51.2
Q ss_pred EEEEEeecCCC--CCCcccccCCCEEEEeeeCCCCeEEEEeCCeEEEecCCCeEeccCCCccccc
Q psy10857 146 RCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAES 208 (235)
Q Consensus 146 ~~~al~dy~~~--~~~eLs~~~gd~v~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~ 208 (235)
.+++.-+|.+. ..++|-+.+|++|.++.+...+-|.+-+.++.|-|+.-||..+..+.....+
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~~~~~ 202 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEPAPKR 202 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccccccccccch
Confidence 44555555544 5678999999999999999999999999999999999999998766655443
No 111
>COG5164 SPT5 Transcription elongation factor [Transcription]
Probab=61.00 E-value=19 Score=32.45 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=38.6
Q ss_pred ccCCCEEEEEEccCCCeeeeeeeccceeeeCCCCcEEEEeeecCCCCCC-----CccccCCCEEEEEee
Q psy10857 23 LRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPANAD-----ELELHVNDVIDVLSE 86 (235)
Q Consensus 23 ~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v~~~~~~~~~a~~~~~~~~~~-----eLs~~~G~~v~v~~~ 86 (235)
|++||.|.|+. |+..|+.|.|+..........+.|.-.-.. .--|..||.+.|++-
T Consensus 91 fqpgD~~Evl~--------Geqrg~~gVV~~~~~~I~tm~~~~~~rl~~p~~~lRk~f~~gD~vkVI~g 151 (607)
T COG5164 91 FQPGDALEVLR--------GEQRGRVGVVPRQKEMIETMTYHFEQRLCGPWGRLRKGFYKGDLVKVIEG 151 (607)
T ss_pred cCCCCeeeeec--------ceecccceeecccccceeeeeeccCceeecchhhhhcccccCCeEEEecc
Confidence 88888888876 566677888876666655555665433222 245788999999874
No 112
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=57.07 E-value=14 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=18.6
Q ss_pred cccccCCCEEEEeeeC------CCCeEEEE
Q psy10857 160 ELELHVNDVIDVLSEV------EEGWWRGR 183 (235)
Q Consensus 160 eLs~~~gd~v~v~~~~------~~~w~~~~ 183 (235)
-|+++.||.|.|-... +..||.|.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 5889999999774443 57899987
No 113
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=52.05 E-value=31 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=22.6
Q ss_pred cccCCCEEEEEEc-cCCCeeeeeeeccceeee
Q psy10857 22 TLRKGDLITGIRV-QSGGWWEGLLVRERQAVT 52 (235)
Q Consensus 22 ~~~~Gd~v~v~~~-~~~~W~~~~~~g~~G~v~ 52 (235)
.+..|+=|.|+.. .|..|.+++...-.|+|.
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~ 53 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVK 53 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEE
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeee
Confidence 5888999999987 667899999988888873
No 114
>KOG1999|consensus
Probab=49.03 E-value=73 Score=31.55 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCCcccccCCCEEEEEEccCCCeeeeeeeccceeeeCCCCcEEEEeeecCCC--------CCCCccccCCCEEEEEe
Q psy10857 17 EADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPA--------NADELELHVNDVIDVLS 85 (235)
Q Consensus 17 ~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v~~~~~~~~~a~~~~~~~--------~~~eLs~~~G~~v~v~~ 85 (235)
......|.+||.|.|+. |++.|-+|+|.......+...-+.... ..-.-.|+.||.+.|+.
T Consensus 402 r~~~~~F~~GD~VeV~~--------Gel~glkG~ve~vdg~~vti~~~~e~l~~pl~~~~~eLrKyF~~GDhVKVi~ 470 (1024)
T KOG1999|consen 402 RKKKHLFSPGDAVEVIV--------GELKGLKGKVESVDGTIVTIMSKHEDLKGPLEVPASELRKYFEPGDHVKVIA 470 (1024)
T ss_pred cccccccCCCCeEEEee--------eeeccceeEEEeccCceEEEeeccccCCCccccchHhhhhhccCCCeEEEEe
Confidence 34455699999999987 455556666644444333333221111 11124578899988866
No 115
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=46.71 E-value=23 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.589 Sum_probs=13.5
Q ss_pred ccCCCEEEEEEccCC---Ceeeeee
Q psy10857 23 LRKGDLITGIRVQSG---GWWEGLL 44 (235)
Q Consensus 23 ~~~Gd~v~v~~~~~~---~W~~~~~ 44 (235)
|++|+.|.|..+.+. .|+.+..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 789999999986533 5887763
No 116
>KOG1314|consensus
Probab=45.85 E-value=22 Score=30.95 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=29.9
Q ss_pred CCCcccccCCCEEEEeeeCCCCeEEEEe-----------CCeEEEecCCC-eEec
Q psy10857 157 NADELELHVNDVIDVLSEVEEGWWRGRL-----------RDRTGVFPSNF-VEEI 199 (235)
Q Consensus 157 ~~~eLs~~~gd~v~v~~~~~~~w~~~~~-----------~g~~G~~P~~~-v~~~ 199 (235)
+...|++++||.|.+. +....|..|.. +..+||||.+. ++..
T Consensus 330 ddprisL~p~d~i~~t-r~~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~ 383 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKAT-RGFNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKC 383 (414)
T ss_pred CCcccccCCCcceeee-eeeecccchhhhhhHHHhhcchhhhccccccccccccc
Confidence 4457999999999774 56668998831 11479999987 4433
No 117
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=44.50 E-value=23 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=17.9
Q ss_pred cccccCCCEEEEEEccCCCeeeeeeeccceee
Q psy10857 20 ELTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51 (235)
Q Consensus 20 eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v 51 (235)
-+.+++||.|.|+.- ...|+.|.|
T Consensus 6 ~~~I~~GD~V~Vi~G--------~dKGK~G~V 29 (83)
T CHL00141 6 KMHVKIGDTVKIISG--------SDKGKIGEV 29 (83)
T ss_pred eCcccCCCEEEEeEc--------CCCCcEEEE
Confidence 358999999999984 334667765
No 118
>KOG3580|consensus
Probab=42.26 E-value=46 Score=31.24 Aligned_cols=49 Identities=18% Similarity=0.385 Sum_probs=36.7
Q ss_pred cEEEEEeecCCCCCCcccccCCCEEEEeeeC----CCCeEEEEeCC-----eEEEecC
Q psy10857 145 RRCRVLFSYTPANADELELHVNDVIDVLSEV----EEGWWRGRLRD-----RTGVFPS 193 (235)
Q Consensus 145 ~~~~al~dy~~~~~~eLs~~~gd~v~v~~~~----~~~w~~~~~~g-----~~G~~P~ 193 (235)
.+.+..|.|+...+..|.|.+|+++.|+... ...|+-.+.+. ..|++|.
T Consensus 505 FyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 505 FYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred eEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 3456678899999999999999999988773 23366666443 4688887
No 119
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=40.53 E-value=29 Score=23.12 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=17.3
Q ss_pred ccccCCCEEEEEEccCCCeeeeeeeccceee
Q psy10857 21 LTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51 (235)
Q Consensus 21 L~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v 51 (235)
+.+++||.|.|+.- ...|+.|.|
T Consensus 5 ~~I~kGD~V~Vi~G--------~dKGK~G~V 27 (76)
T PRK12281 5 LKVKKGDMVKVIAG--------DDKGKTGKV 27 (76)
T ss_pred ccccCCCEEEEeEc--------CCCCcEEEE
Confidence 57999999999984 344666665
No 120
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=38.56 E-value=54 Score=19.70 Aligned_cols=24 Identities=21% Similarity=0.674 Sum_probs=19.2
Q ss_pred cccCCCEEEEEEccCCCeeeeeeec
Q psy10857 22 TLRKGDLITGIRVQSGGWWEGLLVR 46 (235)
Q Consensus 22 ~~~~Gd~v~v~~~~~~~W~~~~~~g 46 (235)
.++.|+.+.+.- .++.|+++...+
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~ 25 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIK 25 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEE
Confidence 578899999888 788999987543
No 121
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=32.32 E-value=35 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=18.5
Q ss_pred ccCCCCCCcccccCCCEEEEEEc
Q psy10857 12 DYTAQEADELTLRKGDLITGIRV 34 (235)
Q Consensus 12 ~~~~~~~~eL~~~~Gd~v~v~~~ 34 (235)
.|.+.+ +++..+.||+|.|.+.
T Consensus 46 K~~aHd-e~~~~k~GD~V~I~Et 67 (87)
T COG0186 46 KYHAHD-ECNEAKVGDIVRIAET 67 (87)
T ss_pred eeEeec-ccccCCCCCEEEEEEc
Confidence 566666 8999999999999885
No 122
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=31.36 E-value=34 Score=24.71 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=11.9
Q ss_pred CCcccccCCCEEEEEEc
Q psy10857 18 ADELTLRKGDLITGIRV 34 (235)
Q Consensus 18 ~~eL~~~~Gd~v~v~~~ 34 (235)
.--|.+++||+|.|+-.
T Consensus 15 ~TGl~lk~GD~IsIvA~ 31 (121)
T PF07828_consen 15 NTGLILKAGDIISIVAS 31 (121)
T ss_dssp EEEEEE-TT-EEEEEEE
T ss_pred eeeEEEcCCCEEEEEEe
Confidence 34578999999999973
No 123
>KOG1708|consensus
Probab=29.06 E-value=49 Score=26.44 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=20.7
Q ss_pred CCCcccccCCCEEEEEEccCCCeeeeeeeccceeee
Q psy10857 17 EADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVT 52 (235)
Q Consensus 17 ~~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v~ 52 (235)
.+.+..|..||.|.|+. |...|++|.|.
T Consensus 67 ~d~dw~ff~GDtVeVlv--------GkDkGkqG~Vt 94 (236)
T KOG1708|consen 67 IDEDWHFFFGDTVEVLV--------GKDKGKQGEVT 94 (236)
T ss_pred cccceeEecCCEEEEEe--------cccCCccceEE
Confidence 35778899999999987 44556777663
No 124
>KOG4384|consensus
Probab=26.86 E-value=40 Score=29.29 Aligned_cols=58 Identities=33% Similarity=0.649 Sum_probs=46.7
Q ss_pred EEEEeeecCCC--CCCCccccCCCEEEEEeecCCceEEeeeCCccccccCcceecccCcc
Q psy10857 58 RCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115 (235)
Q Consensus 58 ~~~a~~~~~~~--~~~eLs~~~G~~v~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~ 115 (235)
.+++.-+|..+ ..++|.+.+|+++.++++..-+-|.+-+.++.|-|+.-|+..+....
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~ 197 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEE 197 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccccccc
Confidence 45566666654 45678899999999999988888999999999999999998765433
No 125
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=24.14 E-value=75 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=17.0
Q ss_pred ccccCCCEEEEEEccCCCeeeeeeeccceee
Q psy10857 21 LTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51 (235)
Q Consensus 21 L~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v 51 (235)
+.+++||.|.|+.- ...|+.|.|
T Consensus 3 ~~i~kGD~V~Vi~G--------~dKGk~G~V 25 (105)
T PRK00004 3 MKIKKGDTVIVIAG--------KDKGKRGKV 25 (105)
T ss_pred CcccCCCEEEEeEc--------CCCCcEEEE
Confidence 46899999999983 345666665
No 126
>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity. Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.
Probab=23.68 E-value=1.7e+02 Score=21.29 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=36.6
Q ss_pred CCcccccCCCEEEEEEc--cCCCeeeeeeeccceeeeCCCCcEEEEeeecCCCCCCCccccCCCEEEEEeecCCceE
Q psy10857 18 ADELTLRKGDLITGIRV--QSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW 92 (235)
Q Consensus 18 ~~eL~~~~Gd~v~v~~~--~~~~W~~~~~~g~~G~v~~~~~~~~~a~~~~~~~~~~eLs~~~G~~v~v~~~~~~~w~ 92 (235)
.+||....+|++.|.+- .+++|-.+- ......|.|.+...++|+.. -.|.++.++-|-
T Consensus 52 s~Dvv~e~sEl~kIhrlE~l~~~~a~~~-------------ftl~~~FsYKG~~NdDl~~~----T~IFKKvdg~Wk 111 (128)
T PF12707_consen 52 SGDVVQESSELIKIHRLEFLSDDWAMCA-------------FTLGEKFSYKGTPNDDLSTY----TSIFKKVDGVWK 111 (128)
T ss_dssp SSSEEEEEEEEEEEEEEEESSSSEEEEE-------------EEEEEEEEETTEEEEEB-EE----EEEEEEETTEEE
T ss_pred cCceeeeehheeeeeeEEecCCCeEEEE-------------EEecceeEecCCcCCchhHH----HHHHhhcCCeEE
Confidence 45666777777776543 345666644 35566788998888877643 246666677663
No 127
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=23.05 E-value=2.9e+02 Score=19.83 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=13.9
Q ss_pred eEEEEEeccCCCCCCccc
Q psy10857 5 IEASVEFDYTAQEADELT 22 (235)
Q Consensus 5 ~~~~a~~~~~~~~~~eL~ 22 (235)
+.+.+++||.....+||-
T Consensus 2 V~al~~~d~d~dg~~eLl 19 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELL 19 (111)
T ss_pred eeEEEEEecCCCCcceEE
Confidence 467889999988777663
No 128
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=23.01 E-value=92 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.3
Q ss_pred CCcccccCCCEEEEEEc
Q psy10857 18 ADELTLRKGDLITGIRV 34 (235)
Q Consensus 18 ~~eL~~~~Gd~v~v~~~ 34 (235)
.+++.|++||.|.++++
T Consensus 40 ~~d~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 40 KEDIELKEGDEVFLIKK 56 (57)
T ss_pred CCccccCCCCEEEEEeC
Confidence 46788999999999875
No 129
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=21.15 E-value=90 Score=22.57 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=18.8
Q ss_pred CCcccccCCCEEEEEEccCCCeeeeeeeccceee
Q psy10857 18 ADELTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51 (235)
Q Consensus 18 ~~eL~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v 51 (235)
.+.+.+++||.|.|+.- ...|.+|.|
T Consensus 37 ~r~~~IkkGD~V~Vi~G--------k~KGk~GkV 62 (114)
T TIGR01080 37 KRALPVRKGDKVRIMRG--------DFKGHEGKV 62 (114)
T ss_pred cccceeecCCEEEEecC--------CCCCCEEEE
Confidence 44568999999999983 344666665
No 130
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=20.57 E-value=98 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=16.7
Q ss_pred ccccCCCEEEEEEccCCCeeeeeeeccceee
Q psy10857 21 LTLRKGDLITGIRVQSGGWWEGLLVRERQAV 51 (235)
Q Consensus 21 L~~~~Gd~v~v~~~~~~~W~~~~~~g~~G~v 51 (235)
+.+++||.|.|+.-. ..|+.|.|
T Consensus 2 ~~ikkGD~V~Vi~G~--------dKGK~G~V 24 (104)
T TIGR01079 2 MKIKKGDTVKVISGK--------DKGKRGKV 24 (104)
T ss_pred CcccCCCEEEEeEcC--------CCCcEEEE
Confidence 368999999999843 34666655
Done!