RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10857
(235 letters)
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 143 bits (362), Expect = 3e-43
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + +
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68
Query: 114 ETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLS 173
T + G + +YT DE+ L + ++V+
Sbjct: 69 PDETEDPEPNY------------------AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIH 110
Query: 174 EVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKA 224
++ +GWW R D TG FPS ++++ + A+ + ++ + + A
Sbjct: 111 KLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNA 161
Score = 115 bits (290), Expect = 2e-32
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG------------------LLVRER 48
DY E+ L GD++ + GWW
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETE 73
Query: 49 QAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 108
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++
Sbjct: 74 DPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133
Query: 109 EEIPAETMTAESRHRKESNNNEADPAKA 136
++ + A+ + ++ + + A
Sbjct: 134 QKSGQDVSQAQRQIKRGAPPRRSSIRNA 161
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 143 bits (360), Expect = 1e-41
Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 38/231 (16%)
Query: 10 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ-------------------- 49
E+ T +EADE LI + G + Q
Sbjct: 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136
Query: 50 ----AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFP 104
A + F +T +L + +++LS+ + WW R TG+ P
Sbjct: 137 SLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVP 196
Query: 105 SNFVEEIP-----------AETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSY 153
+N+V+ +++ S E ++ + + + + +V F
Sbjct: 197 ANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDR 256
Query: 154 TPANAD--ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
P D +L + + V ++ G ++ L + G P ++
Sbjct: 257 VPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVS 307
Score = 96.8 bits (240), Expect = 3e-24
Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 22/180 (12%)
Query: 44 LVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVF 103
L+R+ +PG +S T ADE + +I+ E+G ++ F
Sbjct: 68 LMRDS----SRPGE-----YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSF 118
Query: 104 PSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELEL 163
P + + F +T +L
Sbjct: 119 PDIPALLNHFKMRVLTEASLLAAYKKPII------------EVVVGTFKFTGERETDLPF 166
Query: 164 HVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPA 222
+ +++LS+ + WW R TG+ P+N+V+ S+ +S+ +
Sbjct: 167 EQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGG 226
Score = 47.1 bits (111), Expect = 1e-06
Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 2/140 (1%)
Query: 87 VEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRR 146
V G + + + F + R+E++ +P ++ +
Sbjct: 15 VPRGSHMASMTGGQQMTTNGFDP-FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSS 73
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETM-T 205
+S T ADE + +I+ E+G ++ FP +
Sbjct: 74 RPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVL 133
Query: 206 AESRHRKESNNNEADPAKAL 225
E+ +
Sbjct: 134 TEASLLAAYKKPIIEVVVGT 153
Score = 43.7 bits (102), Expect = 2e-05
Identities = 9/109 (8%), Positives = 23/109 (21%), Gaps = 52/109 (47%)
Query: 6 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSY 65
+ + + A + +L ++KG + + S G ++
Sbjct: 251 KVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYK------------------------ 286
Query: 66 TPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
L + G P ++
Sbjct: 287 ----------------------------AELDGQIGSVPHTYLRFTAVS 307
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 122 bits (307), Expect = 7e-34
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 17/172 (9%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 112
+ R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 132 EEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 191
Query: 113 AETMTAESRHRKESNNNEADPAKALAATI----------------EPGRRCRVLFSYTPA 156
+ + + + P R
Sbjct: 192 PASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAY 251
Query: 157 NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAES 208
+ L L V +++ V G W G + G FP V + + +
Sbjct: 252 DKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPEEDF 303
Score = 75.4 bits (184), Expect = 2e-16
Identities = 12/68 (17%), Positives = 20/68 (29%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
R + L L V +++ V G W G + G FP V +
Sbjct: 236 GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD 295
Query: 113 AETMTAES 120
+ +
Sbjct: 296 QQNPEEDF 303
Score = 65.8 bits (159), Expect = 7e-13
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 2/138 (1%)
Query: 88 EEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRC 147
G RLR F S + + + + + E
Sbjct: 79 PPGVSPSRLRIGDQEFDS-LPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYV 137
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAETMTA 206
R LF + + ++L D++ + + EE WW + + G+ P +VE+ + +
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 207 ESRHRKESNNNEADPAKA 224
+ + P
Sbjct: 198 SALIGGNQEGSHPQPLGG 215
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 117 bits (293), Expect = 7e-32
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 26/176 (14%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 112
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE++
Sbjct: 123 DNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
Query: 113 AETMTAESRHRKES-------------------------NNNEADPAKALAATIEPGRRC 147
+ + +R + + A +
Sbjct: 183 RSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKA 242
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
+ L L V D++ V G W G + R G+FP V+ +
Sbjct: 243 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
Score = 61.6 bits (148), Expect = 2e-11
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPA 201
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE++
Sbjct: 124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVR 183
Query: 202 ETMTAESRHRKESNNNEADPA 222
+ + +R ++ +PA
Sbjct: 184 SSPHGKHGNRNSNSYGIPEPA 204
Score = 55.8 bits (133), Expect = 2e-09
Identities = 15/109 (13%), Positives = 23/109 (21%), Gaps = 52/109 (47%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYT 66
A + A + L L GD++
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVK------------------------------------ 265
Query: 67 PANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
V G W G + R G+FP V+ +
Sbjct: 266 ----------------VTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 100 bits (250), Expect = 7e-28
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64
Query: 114 ET 115
+
Sbjct: 65 PS 66
Score = 100 bits (250), Expect = 8e-28
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP 65
Query: 203 T 203
+
Sbjct: 66 S 66
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 100 bits (250), Expect = 1e-27
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
E+ RRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 14 GERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 73
Query: 112 PAETMTAESRHRKESNNN 129
E+ + +++
Sbjct: 74 SGESDELGISQDEHHHHH 91
Score = 99.1 bits (247), Expect = 4e-27
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
RRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 16 RRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 75
Query: 202 ETMTAESRHRKESNNN 217
E+ + +++
Sbjct: 76 ESDELGISQDEHHHHH 91
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 99.8 bits (249), Expect = 2e-27
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 99 RTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANA 158
+ G FP++ V+ + ++ P + ++ Y N
Sbjct: 8 QKGWFPASHVKLLG-------------------PSSERATPAFHPVCQVIAMYDYAANNE 48
Query: 159 DELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
DEL +I+V+++ + WW+G + TG+FPSN+V+ +
Sbjct: 49 DELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS 93
Score = 89.8 bits (223), Expect = 2e-23
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSN 106
ER P + ++ Y N DEL +I+V+++ + WW+G + TG+FPSN
Sbjct: 25 ERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSN 84
Query: 107 FVEEIPAET 115
+V+ +
Sbjct: 85 YVKMTTDSS 93
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 187 RTGVFPSNFVEEIPAETMTA 206
+ G FP++ V+ + + A
Sbjct: 8 QKGWFPASHVKLLGPSSERA 27
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 98.8 bits (247), Expect = 2e-27
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+ E
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
Score = 98.8 bits (247), Expect = 2e-27
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+ E
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 98.9 bits (247), Expect = 2e-27
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
Score = 98.5 bits (246), Expect = 3e-27
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 6 KKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 97.8 bits (244), Expect = 9e-27
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VEE+
Sbjct: 3 SGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEEL 62
Query: 112 PAETMTAESRHRKES 126
P+ ++ S
Sbjct: 63 PSNAGNTATKASGPS 77
Score = 97.4 bits (243), Expect = 9e-27
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VE
Sbjct: 1 GSSGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
Query: 198 EIPAETMTAESRHRKES 214
E+P+ ++ S
Sbjct: 61 ELPSNAGNTATKASGPS 77
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 95.4 bits (238), Expect = 4e-26
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ G L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+
Sbjct: 1 GSSGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
Query: 198 EIPAET 203
+ +
Sbjct: 61 RLSGPS 66
Score = 95.0 bits (237), Expect = 6e-26
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+ +
Sbjct: 3 SGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
Query: 112 PAET 115
+
Sbjct: 63 SGPS 66
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 94.9 bits (237), Expect = 6e-26
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 6 SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
Score = 94.9 bits (237), Expect = 6e-26
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 6 SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 94.2 bits (235), Expect = 1e-25
Identities = 25/61 (40%), Positives = 29/61 (47%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Query: 112 P 112
Sbjct: 62 K 62
Score = 92.7 bits (231), Expect = 4e-25
Identities = 25/61 (40%), Positives = 29/61 (47%)
Query: 140 TIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Query: 200 P 200
Sbjct: 62 K 62
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 93.5 bits (233), Expect = 2e-25
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG 65
Query: 114 ET 115
+
Sbjct: 66 PS 67
Score = 93.5 bits (233), Expect = 3e-25
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 7 GAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP 66
Query: 203 T 203
+
Sbjct: 67 S 67
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 92.3 bits (230), Expect = 6e-25
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
Score = 92.3 bits (230), Expect = 6e-25
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 92.8 bits (231), Expect = 6e-25
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR 185
S+ + DP A + +E + ++ YT DEL +I V+ + ++GW+ G +
Sbjct: 2 SSGSSGDPPWAPRSYLE---KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN 58
Query: 186 DRTGVFPSNFVEEIPAET 203
TG+FP N+VE I +
Sbjct: 59 GVTGLFPGNYVESISGPS 76
Score = 91.3 bits (227), Expect = 3e-24
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 50 AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
+ ++ YT DEL +I V+ + ++GW+ G + TG+FP N+VE
Sbjct: 11 WAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
Query: 110 EIPAET 115
I +
Sbjct: 71 SISGPS 76
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 92.3 bits (230), Expect = 7e-25
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P E
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 92.3 bits (230), Expect = 7e-25
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P E
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 92.8 bits (231), Expect = 7e-25
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ + F++ N DEL + D+I V E GWW G L RTG FPSN+V EI
Sbjct: 6 SGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
Query: 112 PAETMTAES 120
+ + S
Sbjct: 66 KSSERSGPS 74
Score = 92.4 bits (230), Expect = 9e-25
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
+ F++ N DEL + D+I V E GWW G L RTG FPSN+V EI +
Sbjct: 9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS 68
Query: 203 TMTAES 208
+ S
Sbjct: 69 ERSGPS 74
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 92.9 bits (231), Expect = 7e-25
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR 185
S+ + DP + L P V F+Y DEL L + V+ + +GWWRG
Sbjct: 2 SSGSSGDPGERLYDLNMP---AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN 58
Query: 186 DRTGVFPSNFVEEIPAETMTAES 208
+ G FPSN+V E +
Sbjct: 59 GQVGWFPSNYVTEEGDSPLGDHV 81
Score = 89.8 bits (223), Expect = 1e-23
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 13 LYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEE 72
Query: 112 PAETMTAES 120
+
Sbjct: 73 GDSPLGDHV 81
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 91.5 bits (228), Expect = 1e-24
Identities = 26/57 (45%), Positives = 29/57 (50%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 91.5 bits (228), Expect = 1e-24
Identities = 26/57 (45%), Positives = 29/57 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 91.5 bits (228), Expect = 1e-24
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPA 113
G R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG 66
Query: 114 ET 115
+
Sbjct: 67 PS 68
Score = 91.5 bits (228), Expect = 1e-24
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPA 201
G R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG 66
Query: 202 ET 203
+
Sbjct: 67 PS 68
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 91.3 bits (227), Expect = 2e-24
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETM 116
R F+ +P + D L+L D+ID++S+ G W G L ++ G F +V+ + +
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 117 TA 118
+
Sbjct: 72 SG 73
Score = 91.3 bits (227), Expect = 2e-24
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETM 204
R F+ +P + D L+L D+ID++S+ G W G L ++ G F +V+ + +
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 205 TA 206
+
Sbjct: 72 SG 73
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 90.7 bits (226), Expect = 2e-24
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
Score = 90.7 bits (226), Expect = 2e-24
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 91.2 bits (227), Expect = 2e-24
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSN 106
+ + + C+ L+ + P N EL D+I + ++++E W+ G L ++G FP +
Sbjct: 4 DPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLS 63
Query: 107 FVEEIP 112
+V+ +
Sbjct: 64 YVQVLV 69
Score = 89.6 bits (223), Expect = 9e-24
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
C+ L+ + P N EL D+I + ++++E W+ G L ++G FP ++V+ +
Sbjct: 12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 91.2 bits (227), Expect = 3e-24
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE
Sbjct: 1 GSSGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Query: 198 EIPAET 203
+ +
Sbjct: 61 VLDERS 66
Score = 91.2 bits (227), Expect = 3e-24
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE +
Sbjct: 3 SGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL 62
Query: 112 PAET 115
+
Sbjct: 63 DERS 66
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 90.4 bits (225), Expect = 4e-24
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
+QP CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 2 DQP--CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV 59
Score = 89.6 bits (223), Expect = 8e-24
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 2 DQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV 59
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 90.0 bits (224), Expect = 5e-24
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I
Sbjct: 3 SGSSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
Query: 112 PAET 115
+
Sbjct: 63 SGPS 66
Score = 90.0 bits (224), Expect = 5e-24
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I +
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS 66
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 90.0 bits (224), Expect = 7e-24
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 48 RQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF 107
+ R LF +T + EL DVI +LS + + W G +R TG+FP +F
Sbjct: 10 HHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSF 69
Query: 108 VEEIP 112
V+ +
Sbjct: 70 VKILK 74
Score = 87.7 bits (218), Expect = 6e-23
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 128 NNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR 187
N++ R LF +T + EL DVI +LS + + W G +R
Sbjct: 2 NHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61
Query: 188 TGVFPSNFVEEIP 200
TG+FP +FV+ +
Sbjct: 62 TGIFPLSFVKILK 74
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 89.6 bits (223), Expect = 7e-24
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ GR R F + EL L D++ + ++++ W+ G R G+FP ++E
Sbjct: 1 GSSGSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Query: 198 EIPAET 203
+ +
Sbjct: 61 LLSGPS 66
Score = 89.6 bits (223), Expect = 8e-24
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
GR R F + EL L D++ + ++++ W+ G R G+FP ++E +
Sbjct: 5 SSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG 64
Query: 114 ET 115
+
Sbjct: 65 PS 66
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 89.6 bits (223), Expect = 8e-24
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE + A
Sbjct: 5 SSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
Score = 89.6 bits (223), Expect = 1e-23
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE
Sbjct: 1 GSSGSSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
Query: 198 EIPA 201
+ A
Sbjct: 61 ILVA 64
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 89.2 bits (222), Expect = 1e-23
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 3 SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
Query: 112 PAET 115
+
Sbjct: 63 SGPS 66
Score = 88.8 bits (221), Expect = 1e-23
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSGP 65
Query: 203 T 203
+
Sbjct: 66 S 66
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 89.8 bits (223), Expect = 1e-23
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSN 106
+ + R+ R L+ + +EL ++I VL + + WW+G G+FPSN
Sbjct: 8 SEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSN 67
Query: 107 FVEEIPAETMTAESR 121
FV A +
Sbjct: 68 FVTTNLNIETEAAAV 82
Score = 88.7 bits (220), Expect = 3e-23
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 131 ADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 190
+ + R+ R L+ + +EL ++I VL + + WW+G G+
Sbjct: 4 GSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGL 63
Query: 191 FPSNFVEEIPAETMTAESR 209
FPSNFV A +
Sbjct: 64 FPSNFVTTNLNIETEAAAV 82
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 88.0 bits (219), Expect = 2e-23
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
+ G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
Score = 88.0 bits (219), Expect = 3e-23
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 88.0 bits (219), Expect = 3e-23
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
Score = 88.0 bits (219), Expect = 3e-23
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 89.1 bits (221), Expect = 3e-23
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIP 112
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++P
Sbjct: 4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP 63
Query: 113 AETMTAESRHRKESNNNEADPAKALAATIEPG 144
+ +E+ P +L+AT P
Sbjct: 64 S----SENEKAVSPKKALLPPTVSLSATSGPS 91
Score = 87.2 bits (216), Expect = 1e-22
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIP 200
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++P
Sbjct: 4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP 63
Query: 201 AETMTAESRHRKESNNNEADPAKALTAT 228
+ +E+ P +L+AT
Sbjct: 64 S----SENEKAVSPKKALLPPTVSLSAT 87
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 88.1 bits (219), Expect = 4e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 105
+ R+ R ++ + A +EL ++I VL + + WW+G G+FPS
Sbjct: 7 HHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPS 66
Query: 106 NFVEE 110
NFV
Sbjct: 67 NFVTA 71
Score = 86.2 bits (214), Expect = 2e-22
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
R+ R ++ + A +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA 71
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 88.1 bits (219), Expect = 4e-23
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 111
G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +
Sbjct: 5 SSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
Query: 112 PAET 115
+
Sbjct: 65 SGPS 68
Score = 87.7 bits (218), Expect = 4e-23
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNF 195
++ G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NF
Sbjct: 1 GSSGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNF 60
Query: 196 VEEIPAET 203
V+ + +
Sbjct: 61 VKLLSGPS 68
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 87.7 bits (218), Expect = 4e-23
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 3 HMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
Score = 87.3 bits (217), Expect = 6e-23
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 3 HMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 87.2 bits (217), Expect = 4e-23
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ + LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
Score = 87.2 bits (217), Expect = 4e-23
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ + LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 91.7 bits (227), Expect = 6e-23
Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 24/216 (11%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRERQAVTEQPGRRCRVLF 63
+EA ++D+ A DEL+ ++GD++ + + W++ L + + + +
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60
Query: 64 SYTPAN---ADELELHVNDVIDVL---SEVEEG------WWRGR------LRDRTGVFPS 105
+ A+E+ L SE G + LRD G +
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY-- 118
Query: 106 NFVEEIPAETMTAESRHRKESNNNEAD--PAKALAATIEPGRRCRVLFSYTPANADELEL 163
F+ + ++ + + ++ + + + + + LF + P EL
Sbjct: 119 -FLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGF 177
Query: 164 HVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
D I V+ + WW+G +TG+FP N+V +
Sbjct: 178 RRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 60.9 bits (147), Expect = 2e-11
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIPAETM 204
+ + DEL D++ VL+ E ++ W++ L + G P N++E P
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWF 61
Query: 205 TAE-SRHRKES 214
+ R + E
Sbjct: 62 FGKIPRAKAEE 72
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 86.8 bits (216), Expect = 6e-23
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
Score = 86.8 bits (216), Expect = 6e-23
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 87.4 bits (217), Expect = 6e-23
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVE 109
+ G +++ + EL L DV+ + S + ++GWW+G R G FPS +VE
Sbjct: 3 SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Query: 110 EIPAET 115
E ++
Sbjct: 63 EEGIQS 68
Score = 87.4 bits (217), Expect = 7e-23
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNF 195
++ G +++ + EL L DV+ + S + ++GWW+G R G FPS +
Sbjct: 1 GSSGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTY 60
Query: 196 VEEIPAET 203
VEE ++
Sbjct: 61 VEEEGIQS 68
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 93.9 bits (232), Expect = 7e-23
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 13/155 (8%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 113
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+ +
Sbjct: 172 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD 231
Query: 114 ETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLF--------SYTPANADELEL-- 163
+ + E + +E L L
Sbjct: 232 FPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRD 291
Query: 164 HVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNF 195
D++ +LS+ + + R + +FP
Sbjct: 292 AEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKL 326
Score = 77.3 bits (189), Expect = 7e-17
Identities = 24/110 (21%), Positives = 42/110 (38%)
Query: 109 EEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDV 168
+ A R R + ++ + + R LF +T + EL DV
Sbjct: 139 PYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDV 198
Query: 169 IDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNE 218
I +LS + + W G +R TG+FP +FV+ + + + E
Sbjct: 199 IFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYE 248
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 87.4 bits (217), Expect = 7e-23
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 48 RQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF 107
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+
Sbjct: 9 YDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANY 68
Query: 108 VEEIPA 113
VE +
Sbjct: 69 VELRQS 74
Score = 86.6 bits (215), Expect = 1e-22
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 131 ADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 190
+ G L+ Y A DE+ +D+I + +++GWWRG + R G+
Sbjct: 4 GSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGL 63
Query: 191 FPSNFVEEIPA 201
FP+N+VE +
Sbjct: 64 FPANYVELRQS 74
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 87.4 bits (217), Expect = 8e-23
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 109
+ C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 5 RTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Query: 110 EIPAET 115
+P +
Sbjct: 65 LLPPDF 70
Score = 86.6 bits (215), Expect = 1e-22
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 136 ALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPS 193
++ + + C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP
Sbjct: 1 SMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPD 60
Query: 194 NFVEEIPAET 203
NFV+ +P +
Sbjct: 61 NFVKLLPPDF 70
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 87.0 bits (216), Expect = 1e-22
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNFV 196
+ E + R L Y ++ L ND+I + + +E W+ G+L + G FP + V
Sbjct: 4 LGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
Query: 197 EEIPAETMTAESRH 210
E + ++ + H
Sbjct: 64 EILLSDVPPPQPVH 77
Score = 86.3 bits (214), Expect = 2e-22
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNFVEE 110
+ + + R L Y ++ L ND+I + + +E W+ G+L + G FP + VE
Sbjct: 6 SPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
Query: 111 IPAETMTAESRH 122
+ ++ + H
Sbjct: 66 LLSDVPPPQPVH 77
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 86.5 bits (215), Expect = 1e-22
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVI-DVLSEVEEGWWRGRLRDRTGVFPSNFV 196
++ P R+ + L++ + EL V +V E GW G L +TG+ P N+V
Sbjct: 4 GSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
Query: 197 EEIPAET 203
E + +
Sbjct: 64 EFLSGPS 70
Score = 86.5 bits (215), Expect = 1e-22
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVI-DVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
+ P R+ + L++ + EL V +V E GW G L +TG+ P N+VE
Sbjct: 6 SGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Query: 111 IPAET 115
+ +
Sbjct: 66 LSGPS 70
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 86.3 bits (214), Expect = 2e-22
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFV 108
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V
Sbjct: 5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64
Query: 109 EEIPAETMTAESRH 122
+ + + A
Sbjct: 65 KLLGPSSERASGPS 78
Score = 86.3 bits (214), Expect = 2e-22
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFVE 197
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V+
Sbjct: 6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
Query: 198 EIPAETMTAESRH 210
+ + A
Sbjct: 66 LLGPSSERASGPS 78
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 85.8 bits (213), Expect = 2e-22
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 108
+ RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Query: 109 EEIP 112
+
Sbjct: 66 HILS 69
Score = 85.8 bits (213), Expect = 3e-22
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSN 194
++ RR + ++ N DEL +VI V E ++ WW G + +R GVFP +
Sbjct: 4 GSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVS 63
Query: 195 FVEEIP 200
FV +
Sbjct: 64 FVHILS 69
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 86.4 bits (214), Expect = 3e-22
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 133 PAKALAATIEPGRRCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 190
+ L +T + + P + L L V D++ V G W G + R G+
Sbjct: 5 SSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGL 64
Query: 191 FPSNFVEEIPAETMTAES 208
FP V+ +
Sbjct: 65 FPFTHVKIFDPQNPDENE 82
Score = 85.2 bits (211), Expect = 8e-22
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 52 TEQPGRRCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
T+ + + P + L L V D++ V G W G + R G+FP V+
Sbjct: 12 TQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
Query: 110 EIPAETMTAES 120
+
Sbjct: 72 IFDPQNPDENE 82
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 85.4 bits (212), Expect = 3e-22
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSN 194
++ G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N
Sbjct: 1 GSSGSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN 60
Query: 195 FVEEIPAET 203
++ + +
Sbjct: 61 RLQILSGPS 69
Score = 85.4 bits (212), Expect = 3e-22
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSNFVEE 110
G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N ++
Sbjct: 5 SSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
Query: 111 IPAET 115
+ +
Sbjct: 65 LSGPS 69
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 84.9 bits (211), Expect = 4e-22
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
Score = 84.9 bits (211), Expect = 4e-22
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 85.0 bits (211), Expect = 5e-22
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRD-RTGVFPSNFVEE 110
E+ + R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E
Sbjct: 3 EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62
Query: 111 IPAET 115
+ E
Sbjct: 63 VTKEP 67
Score = 84.3 bits (209), Expect = 9e-22
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRD-RTGVFPSNFVEEIPAE 202
+ R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E+ E
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE 66
Query: 203 T 203
Sbjct: 67 P 67
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 84.9 bits (211), Expect = 5e-22
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 111
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
Score = 84.9 bits (211), Expect = 5e-22
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 199
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 87.1 bits (215), Expect = 6e-22
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIP 112
+ + + + EL L D+I +L+ + ++GWWRG + R G FPSN+VEE
Sbjct: 3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDY 62
Query: 113 AET------MTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVN 166
+E + S K N + + ++ +V Y N + E +
Sbjct: 63 SEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD 122
Query: 167 DVIDVLSEVEE 177
D + E
Sbjct: 123 DATKTFTVTEH 133
Score = 82.0 bits (202), Expect = 5e-20
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIP 200
+ + + + EL L D+I +L+ + ++GWWRG + R G FPSN+VEE
Sbjct: 3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDY 62
Query: 201 AETMTAESRHRKESNNNEADP 221
+E + S +
Sbjct: 63 SEYLPETGGGSGSSMTYKLIL 83
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 84.5 bits (210), Expect = 6e-22
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+ +
Sbjct: 4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
Score = 84.5 bits (210), Expect = 6e-22
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+ +
Sbjct: 4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 84.6 bits (210), Expect = 7e-22
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 111
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Score = 84.6 bits (210), Expect = 7e-22
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 199
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 84.6 bits (210), Expect = 7e-22
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-TGVFPSNFVEEIP 200
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
Query: 201 AET 203
+
Sbjct: 65 GPS 67
Score = 84.2 bits (209), Expect = 9e-22
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-TGVFPSNFVEEIP 112
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
Query: 113 AET 115
+
Sbjct: 65 GPS 67
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 84.7 bits (210), Expect = 7e-22
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIP 112
+ LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
Query: 113 AETMTAE 119
Sbjct: 64 NPEGIHR 70
Score = 84.7 bits (210), Expect = 8e-22
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIPA 201
+ LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 202 ETMTAE 207
Sbjct: 65 PEGIHR 70
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 84.1 bits (209), Expect = 7e-22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 84.1 bits (209), Expect = 7e-22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 84.6 bits (210), Expect = 7e-22
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 112
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
Score = 84.6 bits (210), Expect = 7e-22
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 200
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 84.4 bits (209), Expect = 9e-22
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 52 TEQPGRRCRVLFSYTPANA-------DELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVF 103
+ GRR L+ Y P + EL D+I V E++E G++ G L + G+
Sbjct: 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLV 62
Query: 104 PSNFVEEIPAET 115
PSNF+EE+ +
Sbjct: 63 PSNFLEEVSGPS 74
Score = 84.0 bits (208), Expect = 2e-21
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 143 PGRRCRVLFSYTPANA-------DELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSN 194
GRR L+ Y P + EL D+I V E++E G++ G L + G+ PSN
Sbjct: 6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSN 65
Query: 195 FVEEIPAET 203
F+EE+ +
Sbjct: 66 FLEEVSGPS 74
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 83.8 bits (208), Expect = 1e-21
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 5 SSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
Score = 83.8 bits (208), Expect = 1e-21
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
+ + G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 3 LGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
Query: 198 EI 199
Sbjct: 63 LR 64
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 83.8 bits (208), Expect = 1e-21
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEIP 112
+ R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E+
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Score = 83.8 bits (208), Expect = 1e-21
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEIP 200
+ R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E+
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 83.8 bits (208), Expect = 1e-21
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVE 109
+ G L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V
Sbjct: 3 SGSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Query: 110 EIPAET 115
+ +
Sbjct: 63 PVSGPS 68
Score = 83.8 bits (208), Expect = 2e-21
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIP 200
G L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V +
Sbjct: 6 SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
Query: 201 AET 203
+
Sbjct: 66 GPS 68
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 83.9 bits (208), Expect = 2e-21
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFV 108
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS V
Sbjct: 4 GSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
Query: 109 EEIPAE 114
EE+ +
Sbjct: 64 EELSSG 69
Score = 83.5 bits (207), Expect = 2e-21
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS VEE+
Sbjct: 7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEEL 66
Query: 200 PAE 202
+
Sbjct: 67 SSG 69
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 83.4 bits (207), Expect = 2e-21
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIP 112
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
Score = 83.4 bits (207), Expect = 2e-21
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIP 200
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 83.1 bits (206), Expect = 3e-21
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPA 113
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
Query: 114 ETMTAESRH 122
E H
Sbjct: 65 ELEHHHHHH 73
Score = 83.1 bits (206), Expect = 3e-21
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPA 201
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
Query: 202 ETMTAESRH 210
E H
Sbjct: 65 ELEHHHHHH 73
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 83.1 bits (206), Expect = 3e-21
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 59 CRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 115
+ + P + L L V D++ V G W G + R G+FP V+ +
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62
Score = 83.1 bits (206), Expect = 3e-21
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 147 CRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAET 203
+ + P + L L V D++ V G W G + R G+FP V+ +
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 83.0 bits (206), Expect = 3e-21
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 196
+ R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++
Sbjct: 1 GAMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
Query: 197 EEI 199
E +
Sbjct: 61 EFV 63
Score = 81.9 bits (203), Expect = 7e-21
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 109
R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++E
Sbjct: 2 AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Query: 110 EI 111
+
Sbjct: 62 FV 63
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 82.7 bits (205), Expect = 3e-21
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
+ + YT + DE+ ++V+ + EGWW R + G P++++++
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS 66
Score = 82.7 bits (205), Expect = 3e-21
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
+ + YT + DE+ ++V+ + EGWW R + G P++++++
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS 66
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 82.2 bits (204), Expect = 5e-21
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
Score = 82.2 bits (204), Expect = 5e-21
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 82.4 bits (204), Expect = 5e-21
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ + + L S+T + L +D+I VL E +E WW G + G FP ++V+ I
Sbjct: 6 SGVENLKAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKII 64
Query: 112 PAETMTAES 120
P S
Sbjct: 65 PGSESGPSS 73
Score = 82.4 bits (204), Expect = 6e-21
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ + + L S+T + L +D+I VL E +E WW G + G FP ++V+
Sbjct: 4 GSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVK 62
Query: 198 EIPAETMTAES 208
IP S
Sbjct: 63 IIPGSESGPSS 73
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 82.4 bits (204), Expect = 6e-21
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEEI 199
R+ RVL+ Y AN+ EL L ++VI V S ++ W G ++ G P ++E +
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
Score = 82.4 bits (204), Expect = 7e-21
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEEI 111
R+ RVL+ Y AN+ EL L ++VI V S ++ W G ++ G P ++E +
Sbjct: 16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 82.4 bits (204), Expect = 7e-21
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ + ++ + EL DVI VL + WW G++ D G FP++FV
Sbjct: 4 GSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVR 63
Query: 198 EIPAETMTAESR 209
+ E
Sbjct: 64 LWVNQEDEVEEG 75
Score = 82.4 bits (204), Expect = 7e-21
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ ++ + EL DVI VL + WW G++ D G FP++FV
Sbjct: 6 SGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLW 65
Query: 112 PAETMTAESR 121
+ E
Sbjct: 66 VNQEDEVEEG 75
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 82.0 bits (203), Expect = 8e-21
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
Score = 81.6 bits (202), Expect = 1e-20
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 82.1 bits (203), Expect = 8e-21
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI-PAETM 116
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ PA++
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 63
Query: 117 TAESRHRKE 125
+ E+
Sbjct: 64 SRENLGGPP 72
Score = 82.1 bits (203), Expect = 8e-21
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI-PAETM 204
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ PA++
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 63
Query: 205 TAESRHRKE 213
+ E+
Sbjct: 64 SRENLGGPP 72
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 81.5 bits (202), Expect = 1e-20
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 51 VTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 110
+ E VL+ Y + EL + D++ +L+ + WW+ + R G P+ ++++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Query: 111 I 111
+
Sbjct: 61 L 61
Score = 79.6 bits (197), Expect = 5e-20
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
VL+ Y + EL + D++ +L+ + WW+ + R G P+ +++++
Sbjct: 6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 82.1 bits (203), Expect = 1e-20
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 105
E L+ Y + E+ + D++ +L+ + WW+ + DR G P+
Sbjct: 7 HHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPA 66
Query: 106 NFVEEIPA 113
+V+++ A
Sbjct: 67 AYVKKLAA 74
Score = 79.4 bits (196), Expect = 1e-19
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ A
Sbjct: 15 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 81.2 bits (201), Expect = 1e-20
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 52 TEQPGRRCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
+ RV+ P + L L V +++ V G W G + G FP V
Sbjct: 2 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61
Query: 110 EIPAE 114
+ +
Sbjct: 62 LLDQQ 66
Score = 81.2 bits (201), Expect = 1e-20
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 147 CRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 202
RV+ P + L L V +++ V G W G + G FP V + +
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ 66
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 81.2 bits (201), Expect = 1e-20
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ L+ + DEL D++ VL + +GWW L R G+ P N ++ +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
Query: 112 PAET 115
Sbjct: 62 VGMY 65
Score = 81.2 bits (201), Expect = 1e-20
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ L+ + DEL D++ VL + +GWW L R G+ P N ++ +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
Query: 200 PAET 203
Sbjct: 62 VGMY 65
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 80.7 bits (200), Expect = 2e-20
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAET 115
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI ET
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 80.7 bits (200), Expect = 2e-20
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPAET 203
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI ET
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 81.2 bits (201), Expect = 2e-20
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 112
+ V+ +Y EL L +V+DV+ + E GWW + G P+ ++E
Sbjct: 5 SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQN 64
Query: 113 A 113
+
Sbjct: 65 S 65
Score = 80.4 bits (199), Expect = 2e-20
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
+ V+ +Y EL L +V+DV+ + E GWW + G P+ ++E +
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 81.3 bits (201), Expect = 2e-20
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFP 104
+ L+S+ +L D I V+S+ + WW G+LR +TG+FP
Sbjct: 8 HERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFP 67
Query: 105 SNFVEEIPAET 115
+N+V +
Sbjct: 68 ANYVTMNSGPS 78
Score = 80.9 bits (200), Expect = 2e-20
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNF 195
+ L+S+ +L D I V+S+ + WW G+LR +TG+FP+N+
Sbjct: 11 VGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANY 70
Query: 196 VEEIPAET 203
V +
Sbjct: 71 VTMNSGPS 78
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 81.3 bits (201), Expect = 2e-20
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEEIP 112
L SY N L H D+I +L +E GW G R+G+FP++ V+
Sbjct: 7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAA 66
Query: 113 AETMTAESRHRKES 126
A + R S
Sbjct: 67 APDFSFSKEQRSGS 80
Score = 81.3 bits (201), Expect = 2e-20
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEEIP 200
L SY N L H D+I +L +E GW G R+G+FP++ V+
Sbjct: 7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAA 66
Query: 201 AETMTAESRHRKES 214
A + R S
Sbjct: 67 APDFSFSKEQRSGS 80
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 80.8 bits (200), Expect = 2e-20
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G + Y + +L + I +L + WW G G P+N V +
Sbjct: 3 SGSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKH 62
Query: 112 PAET 115
+
Sbjct: 63 SGPS 66
Score = 80.4 bits (199), Expect = 2e-20
Identities = 12/65 (18%), Positives = 23/65 (35%)
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 198
++ G + Y + +L + I +L + WW G G P+N V +
Sbjct: 2 SSGSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61
Query: 199 IPAET 203
+
Sbjct: 62 HSGPS 66
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 79.3 bits (196), Expect = 8e-20
Identities = 14/61 (22%), Positives = 22/61 (36%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ + F+YT A EL DV+ + WWRG G+ P ++
Sbjct: 6 SGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLP 65
Query: 112 P 112
Sbjct: 66 A 66
Score = 79.3 bits (196), Expect = 9e-20
Identities = 15/63 (23%), Positives = 23/63 (36%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ E F+YT A EL DV+ + WWRG G+ P ++
Sbjct: 4 GSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYIT 63
Query: 198 EIP 200
Sbjct: 64 LPA 66
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 78.5 bits (194), Expect = 2e-19
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEE 110
+ + DEL D++ VL+ E ++ W++ L + G P N++E
Sbjct: 5 ASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
Query: 111 IP 112
P
Sbjct: 65 KP 66
Score = 78.5 bits (194), Expect = 2e-19
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIP 200
+ + DEL D++ VL+ E ++ W++ L + G P N++E P
Sbjct: 8 GSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 66
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 78.0 bits (193), Expect = 2e-19
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNFVEEI 111
+ L+S+ + +L DVI +L + + WW GR+ R G+FP+N+VE +
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
Score = 78.0 bits (193), Expect = 2e-19
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNFVEEI 199
+ L+S+ + +L DVI +L + + WW GR+ R G+FP+N+VE +
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 77.8 bits (192), Expect = 3e-19
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 56 GRRCRVLFSYTPANA-------DELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNF 107
G+ Y P + L L DV+ V + ++G++ G L G+ P++
Sbjct: 7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHL 66
Query: 108 VEEIPAE 114
++ +
Sbjct: 67 LDHMSLH 73
Score = 77.8 bits (192), Expect = 3e-19
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 144 GRRCRVLFSYTPANA-------DELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNF 195
G+ Y P + L L DV+ V + ++G++ G L G+ P++
Sbjct: 7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHL 66
Query: 196 VEEIPAE 202
++ +
Sbjct: 67 LDHMSLH 73
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 77.3 bits (191), Expect = 4e-19
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVE 109
+ G F++ E+ + I +L +V+E W+ GR+ R G+FP +V+
Sbjct: 3 SGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Query: 110 EIP 112
I
Sbjct: 63 VIS 65
Score = 77.3 bits (191), Expect = 4e-19
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 200
G F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 77.5 bits (191), Expect = 6e-19
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
+Y E+ + VL + E GWW R + G PS+++
Sbjct: 6 SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN 65
Query: 202 ETMTAESRHRKESNNNEADPAKA 224
E + + + E+ P+
Sbjct: 66 E--------QPDPSGKESGPSSG 80
Score = 77.1 bits (190), Expect = 8e-19
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
+Y E+ + VL + E GWW R + G PS+++ E
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66
Query: 115 TMTAESRHRKESNNNEADPAKA 136
+ + + E+ P+
Sbjct: 67 --------QPDPSGKESGPSSG 80
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 76.4 bits (189), Expect = 7e-19
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVE 109
+++Y DE+ + D+I V+ GW G G+FP+++ +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 76.4 bits (189), Expect = 7e-19
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVE 197
+++Y DE+ + D+I V+ GW G G+FP+++ +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 76.6 bits (189), Expect = 8e-19
Identities = 11/61 (18%), Positives = 18/61 (29%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ F Y A EL + + + WW GR G+ P ++
Sbjct: 5 SSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQ 64
Query: 112 P 112
Sbjct: 65 D 65
Score = 76.2 bits (188), Expect = 1e-18
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 200
F Y A EL + + + WW GR G+ P ++
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQD 65
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 77.2 bits (190), Expect = 9e-19
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 120 SRHRKESNNNEADPAKALAATIEP-GRRCRVLFSYTPANADELELHVNDVIDVLSE---- 174
H + + + P G +F Y A +EL L D + VLS+
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAV 63
Query: 175 -VEEGWWRGRLRD-RTGVFPSNFVE 197
+EGWW G+L R GVFPSN+V
Sbjct: 64 SGDEGWWTGQLPSGRVGVFPSNYVA 88
Score = 74.9 bits (184), Expect = 7e-18
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGRLRD-RTGVFPS 105
T G +F Y A +EL L D + VLS+ +EGWW G+L R GVFPS
Sbjct: 25 TTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPS 84
Query: 106 NFVE 109
N+V
Sbjct: 85 NYVA 88
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 77.2 bits (190), Expect = 9e-19
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSE----VEEGWWRGRLRD--RTGVFPSNF 107
+V++ YTP N DELEL D I + EGW G +G+ P N+
Sbjct: 14 ANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 73
Query: 108 VEEIP-AETMTAESRHRKES 126
+ + T S
Sbjct: 74 ITKADECSTWIFHGSSGPSS 93
Score = 77.2 bits (190), Expect = 1e-18
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 140 TIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE----VEEGWWRGRLRD--RTGVFPS 193
+V++ YTP N DELEL D I + EGW G +G+ P
Sbjct: 12 RFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPE 71
Query: 194 NFVEEIP-AETMTAESRHRKES 214
N++ + T S
Sbjct: 72 NYITKADECSTWIFHGSSGPSS 93
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 76.6 bits (189), Expect = 1e-18
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 47 ERQAVTEQPGR-RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVF 103
Q ++ + + + ++ ADE+ L DV+ VL + E+GW G RLRD TG F
Sbjct: 7 GWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGWF 65
Query: 104 PSNFVEEIP 112
P +F I
Sbjct: 66 PEDFARFIS 74
Score = 76.6 bits (189), Expect = 1e-18
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEIP 200
+ + ++ ADE+ L DV+ VL + E+GW G RLRD TG FP +F I
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGWFPEDFARFIS 74
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 76.2 bits (188), Expect = 1e-18
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ G L+ Y+ +L + I V + + WW G + DR+G+FPSN+V+
Sbjct: 2 SSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVK 60
Query: 198 EIPAET 203
+
Sbjct: 61 PKDSGP 66
Score = 76.2 bits (188), Expect = 1e-18
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
G L+ Y+ +L + I V + + WW G + DR+G+FPSN+V+
Sbjct: 4 GSSGGEEYIALYPYSSVEPGDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVKPK 62
Query: 112 PAET 115
+
Sbjct: 63 DSGP 66
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 76.2 bits (188), Expect = 1e-18
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-----RTGVFPSNFV 108
+ + F Y D+L + I V S + W+ G +D G+FP +FV
Sbjct: 5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
Query: 109 E 109
Sbjct: 65 A 65
Score = 75.8 bits (187), Expect = 2e-18
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-----RTGVFPSNFV 196
E + F Y D+L + I V S + W+ G +D G+FP +FV
Sbjct: 5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
Query: 197 E 197
Sbjct: 65 A 65
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 75.8 bits (187), Expect = 2e-18
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 141 IEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 199
++ L+ YT +DEL +H D+I V + E WW G + + G FP+N V
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASE 62
Query: 200 PAET 203
Sbjct: 63 TLYQ 66
Score = 75.8 bits (187), Expect = 2e-18
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAE 114
L+ YT +DEL +H D+I V + E WW G + + G FP+N V
Sbjct: 6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLY 65
Query: 115 T 115
Sbjct: 66 Q 66
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 74.9 bits (185), Expect = 2e-18
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEI 111
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
Score = 74.9 bits (185), Expect = 2e-18
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEI 199
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 75.5 bits (186), Expect = 2e-18
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 56 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPSNFVEEI 111
G++ + +F +T N L DV+ +L E ++GW G G FPS++ + +
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
Query: 112 PAET 115
+
Sbjct: 67 SGPS 70
Score = 75.5 bits (186), Expect = 2e-18
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 144 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPSNFVEEI 199
G++ + +F +T N L DV+ +L E ++GW G G FPS++ + +
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
Query: 200 PAET 203
+
Sbjct: 67 SGPS 70
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 75.4 bits (186), Expect = 3e-18
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50 AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFV 108
+++ ++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 109 EEI 111
E
Sbjct: 62 TEA 64
Score = 74.6 bits (184), Expect = 4e-18
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFV 196
+ + ++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 197 EEI 199
E
Sbjct: 62 TEA 64
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 76.7 bits (188), Expect = 3e-18
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 115 TMTAESRHRKESNNNEADPAKALAATIEPG--RRCRVLFSYTPANADELELHVNDVIDVL 172
+ H N + PG + + YT + DEL+L DV+ V+
Sbjct: 13 GLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVI 72
Query: 173 S-----EVEEGWWRG----------RLRDRTGVFPSNFVEEI 199
E +EGW G L GVFP NF E +
Sbjct: 73 PFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 114
Score = 74.7 bits (183), Expect = 2e-17
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG------- 94
R + + + YT + DEL+L DV+ V+ E +EGW G
Sbjct: 35 GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWN 94
Query: 95 ---RLRDRTGVFPSNFVEEI 111
L GVFP NF E +
Sbjct: 95 QHKELEKCRGVFPENFTERV 114
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 74.9 bits (185), Expect = 3e-18
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 109
F Y +A EL + + E WW GR G+ P ++
Sbjct: 4 GSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 74.5 bits (184), Expect = 3e-18
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
+ F Y +A EL + + E WW GR G+ P ++
Sbjct: 1 GPLGSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 74.6 bits (184), Expect = 4e-18
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVE 109
+ F++ E+ + I +L +V+E W+ GR+ R G+FP +V+
Sbjct: 2 IDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
Query: 110 EIP 112
I
Sbjct: 62 VIK 64
Score = 74.2 bits (183), Expect = 7e-18
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 200
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 75.3 bits (185), Expect = 6e-18
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 50 AVTEQPGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVEE-GWWRGRLRDRT 100
E P R LF Y P A +EL +I V + + G++RG R
Sbjct: 11 GAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARL 70
Query: 101 GVFPSNFVEEIPAET 115
G+ P N V EI A+
Sbjct: 71 GLIPCNMVSEIQADD 85
Score = 75.3 bits (185), Expect = 6e-18
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 125 ESNNNEADPAKALAATIEPGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVE 176
S ++ DP A P R LF Y P A +EL +I V + +
Sbjct: 2 SSGSSGTDPG----AEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKD 57
Query: 177 E-GWWRGRLRDRTGVFPSNFVEEIPAET 203
G++RG R G+ P N V EI A+
Sbjct: 58 ADGFYRGETCARLGLIPCNMVSEIQADD 85
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 74.2 bits (183), Expect = 6e-18
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAE 114
R LF + + ++L D++ + + EE WW + G+ P +VE+
Sbjct: 3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62
Query: 115 T 115
Sbjct: 63 H 63
Score = 74.2 bits (183), Expect = 6e-18
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAE 202
R LF + + ++L D++ + + EE WW + G+ P +VE+
Sbjct: 3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62
Query: 203 T 203
Sbjct: 63 H 63
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 72.6 bits (178), Expect = 2e-17
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
V F+Y DEL L + V+ +GWWRG + G FPSN+V E
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE 56
Score = 72.6 bits (178), Expect = 2e-17
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
V F+Y DEL L + V+ +GWWRG + G FPSN+V E
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE 56
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 72.7 bits (179), Expect = 2e-17
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G+ ++L+ +T NA+EL + ++V++VL + + W + G P N + E
Sbjct: 3 SGSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
Query: 112 PAET 115
+
Sbjct: 63 SGPS 66
Score = 72.3 bits (178), Expect = 4e-17
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 197
++ G+ ++L+ +T NA+EL + ++V++VL + + W + G P N +
Sbjct: 1 GSSGSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILG 60
Query: 198 EIPAET 203
E +
Sbjct: 61 EASGPS 66
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 73.2 bits (180), Expect = 3e-17
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 133 PAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGV 190
K + +++ EL + I ++ +V E W+ GR+ R G+
Sbjct: 6 SGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGI 65
Query: 191 FPSNFVEEIPAETMTAESRH 210
FP+++V+ +
Sbjct: 66 FPASYVQVSREPRLRLCDDS 85
Score = 72.9 bits (179), Expect = 4e-17
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 50 AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNF 107
+++ EL + I ++ +V E W+ GR+ R G+FP+++
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 108 VEEIPAETMTAESRH 122
V+ +
Sbjct: 71 VQVSREPRLRLCDDS 85
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 72.3 bits (178), Expect = 4e-17
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 55 PGRRCRVLFSYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 111
GRR R + YT + DE+ D+ V +E+E+GW G+ + VEE+
Sbjct: 6 SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Query: 112 PAET 115
+
Sbjct: 66 SGPS 69
Score = 72.3 bits (178), Expect = 4e-17
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 143 PGRRCRVLFSYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 199
GRR R + YT + DE+ D+ V +E+E+GW G+ + VEE+
Sbjct: 6 SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Query: 200 PAET 203
+
Sbjct: 66 SGPS 69
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 72.3 bits (178), Expect = 4e-17
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 71.6 bits (176), Expect = 7e-17
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 72.5 bits (178), Expect = 5e-17
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 49 QAVTEQPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTG 101
+ + R L+ + P N + E+ L D++ +LS + WW+ R ++ G
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 102 VFPSNFVEEIPAETMTAES 120
P N++E I
Sbjct: 67 YIPYNYIEIIKRRKKIEHV 85
Score = 71.0 bits (174), Expect = 2e-16
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 142 EPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGVFPSN 194
R L+ + P N + E+ L D++ +LS + WW+ R ++ G P N
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 195 FVEEIPAETMTAES 208
++E I
Sbjct: 72 YIEIIKRRKKIEHV 85
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 71.5 bits (176), Expect = 5e-17
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 109
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
Score = 71.5 bits (176), Expect = 5e-17
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 197
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 71.6 bits (176), Expect = 7e-17
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 52 TEQPGRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLRD--RTGVFPSNF 107
+ ++ + +F +T N L DVI +L E ++GW G G FPS++
Sbjct: 2 SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61
Query: 108 VEEIP 112
+ +
Sbjct: 62 TKLLE 66
Score = 70.8 bits (174), Expect = 1e-16
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 144 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLRD--RTGVFPSNFVEEI 199
++ + +F +T N L DVI +L E ++GW G G FPS++ + +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
Query: 200 P 200
Sbjct: 66 E 66
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 71.8 bits (176), Expect = 7e-17
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 49 QAVTEQPGRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLRD------RTG 101
+ + + R L + + L + DVI VL + +G W+G + + R G
Sbjct: 11 SGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIG 70
Query: 102 VFPSNFVEEI 111
FP VE +
Sbjct: 71 YFPPGIVEVV 80
Score = 71.8 bits (176), Expect = 9e-17
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 120 SRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEG 178
S H +++ P +L + R L + + L + DVI VL + +G
Sbjct: 2 SSHHHHHHSSGLVPRGSL--------KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDG 53
Query: 179 WWRGRLRD------RTGVFPSNFVEEI 199
W+G + + R G FP VE +
Sbjct: 54 RWKGHIHESQRGTDRIGYFPPGIVEVV 80
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 70.6 bits (174), Expect = 1e-16
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 70.6 bits (174), Expect = 1e-16
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 71.4 bits (175), Expect = 1e-16
Identities = 11/65 (16%), Positives = 29/65 (44%)
Query: 69 NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNN 128
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63
Query: 129 NEADP 133
+ +
Sbjct: 64 SGDNA 68
Score = 71.4 bits (175), Expect = 1e-16
Identities = 11/65 (16%), Positives = 29/65 (44%)
Query: 157 NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNN 216
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63
Query: 217 NEADP 221
+ +
Sbjct: 64 SGDNA 68
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 1e-16
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 49 QAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNF 107
++ G + +T +L +++ V+ + +GWW + G+ P +
Sbjct: 3 ESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTY 62
Query: 108 VEEI 111
+E
Sbjct: 63 LEPY 66
Score = 70.4 bits (173), Expect = 2e-16
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFV 196
+ G + +T +L +++ V+ + +GWW + G+ P ++
Sbjct: 4 SHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
Query: 197 EEI 199
E
Sbjct: 64 EPY 66
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 70.5 bits (173), Expect = 1e-16
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 138 AATIEPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGV 190
+ R L+ + P N + E+ L D++ +LS + WW+ R ++ G
Sbjct: 1 GSHHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60
Query: 191 FPSNFVEEI 199
P N++E I
Sbjct: 61 IPYNYIEII 69
Score = 70.5 bits (173), Expect = 2e-16
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 53 EQPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGVFPS 105
R L+ + P N + E+ L D++ +LS + WW+ R ++ G P
Sbjct: 4 HHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 63
Query: 106 NFVEEI 111
N++E I
Sbjct: 64 NYIEII 69
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 70.9 bits (174), Expect = 2e-16
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 49 QAVTEQPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTG 101
+ + R L+ + P N + E+ L D++ +LS + WW+ R ++ G
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 102 VFPSNFVEEIP 112
P N++E I
Sbjct: 67 YIPYNYIEIIK 77
Score = 69.0 bits (169), Expect = 7e-16
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 142 EPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGVFPSN 194
R L+ + P N + E+ L D++ +LS + WW+ R ++ G P N
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 195 FVEEIP 200
++E I
Sbjct: 72 YIEIIK 77
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 70.4 bits (173), Expect = 2e-16
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 111
+ G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 3 SGSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Query: 112 PA 113
Sbjct: 63 SG 64
Score = 70.0 bits (172), Expect = 3e-16
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 201
G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSG 64
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 70.0 bits (172), Expect = 2e-16
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 56 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPSNFVEEI 111
R + +FS+ N+ L D+I +L E +GW G G FP ++ +
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
Score = 70.0 bits (172), Expect = 2e-16
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 144 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPSNFVEEI 199
R + +FS+ N+ L D+I +L E +GW G G FP ++ +
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 70.5 bits (173), Expect = 2e-16
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 111
Q L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA-- 60
Query: 112 PAETMTAESRHRKES 126
P + + + K
Sbjct: 61 PVDRLDYKDDDDKHH 75
Score = 70.5 bits (173), Expect = 2e-16
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 141 IEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 198
++ L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 2 VQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA- 60
Query: 199 IPAETMTAESRHRKES 214
P + + + K
Sbjct: 61 -PVDRLDYKDDDDKHH 75
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 70.4 bits (173), Expect = 2e-16
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 52 TEQPGRRCRVLFSYTP-ANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSNFV 108
+ + RV++ + +EL + ++I V + V GW G+ G+ P+++V
Sbjct: 5 SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64
Query: 109 EEIPAET 115
E +P +
Sbjct: 65 EILPNDG 71
Score = 70.0 bits (172), Expect = 3e-16
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 138 AATIEPGRRCRVLFSYTP-ANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSN 194
+ + + RV++ + +EL + ++I V + V GW G+ G+ P++
Sbjct: 3 SGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTD 62
Query: 195 FVEEIPAET 203
+VE +P +
Sbjct: 63 YVEILPNDG 71
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 70.5 bits (173), Expect = 2e-16
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLS----EVEEGWWRGRLRDRTG 101
+ + ++++ N +EL + N + +L WW + + G
Sbjct: 3 SGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKG 62
Query: 102 VFPSNFVEEIPA 113
PSN++ + +
Sbjct: 63 YVPSNYIRKTES 74
Score = 70.1 bits (172), Expect = 4e-16
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLS----EVEEGWWRGRLRDRTGVFPSN 194
+ E + ++++ N +EL + N + +L WW + + G PSN
Sbjct: 8 SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSN 67
Query: 195 FVEEIPA 201
++ + +
Sbjct: 68 YIRKTES 74
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 70.1 bits (172), Expect = 3e-16
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAE 119
L Y A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 PPLPPY-SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
Query: 120 SR 121
Sbjct: 63 VL 64
Score = 70.1 bits (172), Expect = 3e-16
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAE 207
L Y A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 PPLPPY-SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
Query: 208 SR 209
Sbjct: 63 VL 64
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 70.7 bits (173), Expect = 3e-16
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 49 QAVTEQPGRRCRVLFSYTPANA------DELELHVNDVIDVLSEVEE-GWWRGRLRD-RT 100
+ C +SY P + EL L + V +++E G++ G L D +
Sbjct: 10 KQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQR 69
Query: 101 GVFPSNFVEEIPAET 115
G+ PSNFV+ +
Sbjct: 70 GLVPSNFVDFVQDNE 84
Score = 70.3 bits (172), Expect = 4e-16
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 133 PAKALAATIEPGRRCRVLFSYTPANA------DELELHVNDVIDVLSEVEE-GWWRGRLR 185
+ C +SY P + EL L + V +++E G++ G L
Sbjct: 6 SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65
Query: 186 D-RTGVFPSNFVEEIPAET 203
D + G+ PSNFV+ +
Sbjct: 66 DGQRGLVPSNFVDFVQDNE 84
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 68.9 bits (169), Expect = 6e-16
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 71 DELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMT 117
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
Score = 68.9 bits (169), Expect = 6e-16
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 159 DELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMT 205
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 71.7 bits (175), Expect = 8e-16
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 63 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRH 122
+S T ADE + +I+ E+G ++ FP +
Sbjct: 49 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108
Query: 123 RKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG 182
+ F +T +L + +++LS+ + WW
Sbjct: 109 LLAAYKKP------------IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA 156
Query: 183 RLRD-RTGVFPSNFVEE 198
R TG+ P+N+V+
Sbjct: 157 RNALGTTGLVPANYVQI 173
Score = 62.5 bits (151), Expect = 2e-12
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 25/126 (19%)
Query: 10 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ-------------------- 49
E+ T +EADE LI + G + Q
Sbjct: 48 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 107
Query: 50 ----AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFP 104
A + F +T +L + +++LS+ + WW R TG+ P
Sbjct: 108 SLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVP 167
Query: 105 SNFVEE 110
+N+V+
Sbjct: 168 ANYVQI 173
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 68.9 bits (169), Expect = 9e-16
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPS 105
R+ + E L+ Y + EL L N+ +L E WWR + R+ G PS
Sbjct: 10 NRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPS 69
Query: 106 NFVEEIPAETMTAE 119
+++ E +
Sbjct: 70 SYLVEKSPNNLETY 83
Score = 67.0 bits (164), Expect = 5e-15
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 200
L+ Y + EL L N+ +L E WWR + R+ G PS+++ E
Sbjct: 17 PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 76
Query: 201 AETMTAE 207
+
Sbjct: 77 PNNLETY 83
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 68.6 bits (168), Expect = 1e-15
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---------RTGV 102
+ G+ LF Y A++L D + VL EGWW R + G
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 103 FPSNFVEEIP 112
PSN+V E
Sbjct: 63 IPSNYVAEDS 72
Score = 68.2 bits (167), Expect = 2e-15
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---------RTGVFPS 193
G+ LF Y A++L D + VL EGWW R + G PS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 194 NFVEEIP 200
N+V E
Sbjct: 66 NYVAEDS 72
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 69.4 bits (170), Expect = 1e-15
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEE 110
VL+ + ADEL +V + + + + W+ + R G+ P FV
Sbjct: 3 LGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62
Query: 111 IPAETMTAESRHRKESNNNEADP 133
I T A E + P
Sbjct: 63 IDIATGYATGNDVIEDIKSVNLP 85
Score = 68.7 bits (168), Expect = 2e-15
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEE 198
VL+ + ADEL +V + + + + W+ + R G+ P FV
Sbjct: 3 LGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62
Query: 199 IPAETMTAESRHRKESNNNEADP 221
I T A E + P
Sbjct: 63 IDIATGYATGNDVIEDIKSVNLP 85
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 68.1 bits (167), Expect = 2e-15
Identities = 9/68 (13%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 50 AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSNF 107
+ G C ++ + ++ + + + + ++ E +GW R R ++ G P+++
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60
Query: 108 VEEIPAET 115
+ +
Sbjct: 61 LRVTSGPS 68
Score = 67.7 bits (166), Expect = 2e-15
Identities = 9/68 (13%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSNF 195
++ G C ++ + ++ + + + + ++ E +GW R R ++ G P+++
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60
Query: 196 VEEIPAET 203
+ +
Sbjct: 61 LRVTSGPS 68
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 68.2 bits (167), Expect = 2e-15
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 51 VTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFV 108
+ L+ Y +L H + +L WW R TG PSN+V
Sbjct: 1 MRGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
Query: 109 EEIPAETMTAESRHRKESNNNE 130
P +++ E + E + +
Sbjct: 61 A--PVDSIQGEQKLISEEDLHH 80
Score = 66.6 bits (163), Expect = 7e-15
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 199
L+ Y +L H + +L WW R TG PSN+V
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVA-- 61
Query: 200 PAETMTAESRHRKESNNNE 218
P +++ E + E + +
Sbjct: 62 PVDSIQGEQKLISEEDLHH 80
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 69.3 bits (169), Expect = 2e-15
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 112 PAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDV 171
+ + + ++ + R ++++ + A +L L + DV+ +
Sbjct: 27 EPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRI 86
Query: 172 LSEVEEGWWRGRL---RDRTGVFPSNFVE 197
E W+RG L + G+FP +F+
Sbjct: 87 Q-ETCGDWYRGYLIKHKMLQGIFPKSFIH 114
Score = 65.9 bits (160), Expect = 3e-14
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 48 RQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL---RDRTGVFP 104
+ R ++++ + A +L L + DV+ + E W+RG L + G+FP
Sbjct: 51 SSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQGIFP 109
Query: 105 SNFVE 109
+F+
Sbjct: 110 KSFIH 114
Score = 45.8 bits (108), Expect = 7e-07
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
+++ A +L+L+ GD++ I+ G W+ G L++ +
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKM 103
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 66.9 bits (164), Expect = 3e-15
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 58 RCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEE 110
+ + + EL L DVI + E GW G+L D + G P+ +++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 66.9 bits (164), Expect = 3e-15
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 146 RCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEE 198
+ + + EL L DVI + E GW G+L D + G P+ +++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 47.2 bits (113), Expect = 6e-08
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 11 FDYTAQ-EADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
+D+ EL L+KGD+I R + GW G L+ +
Sbjct: 7 YDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSK 46
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 67.0 bits (164), Expect = 4e-15
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD-RTGVFPSNFVE 109
C+V++SY + DEL + ++V++V+ + + E W + R + + G P +++
Sbjct: 9 LRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68
Query: 110 EIPAE 114
+
Sbjct: 69 FPTSS 73
Score = 66.2 bits (162), Expect = 1e-14
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD-RTGVFPSNFVEEI 199
C+V++SY + DEL + ++V++V+ + + E W + R + + G P +++
Sbjct: 11 NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFP 70
Query: 200 PAE 202
+
Sbjct: 71 TSS 73
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 67.0 bits (164), Expect = 4e-15
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPS 105
R++ E L+ Y + EL L ++ +L E WWR + ++ G PS
Sbjct: 11 NRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPS 70
Query: 106 NFVEE 110
+++ E
Sbjct: 71 SYLVE 75
Score = 64.3 bits (157), Expect = 4e-14
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
L+ Y + EL L ++ +L E WWR + ++ G PS+++ E
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 75
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 66.5 bits (163), Expect = 6e-15
Identities = 13/65 (20%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 136 ALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRD-RTGVFPS 193
A+ A+ G C +++ +L DV+ +++ ++ W++ + + R G+ P+
Sbjct: 3 AIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPA 62
Query: 194 NFVEE 198
N+V++
Sbjct: 63 NYVQK 67
Score = 66.1 bits (162), Expect = 8e-15
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRD-RTGVFPSNFVEE 110
G C +++ +L DV+ +++ ++ W++ + + R G+ P+N+V++
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 65.7 bits (161), Expect = 1e-14
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNFVEE 110
+ +R V + + + DEL + D + +L + + WW +L D ++G+ P+ F+E
Sbjct: 4 KSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 63
Query: 111 I 111
+
Sbjct: 64 V 64
Score = 65.0 bits (159), Expect = 2e-14
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNFVEEI 199
+R V + + + DEL + D + +L + + WW +L D ++G+ P+ F+E +
Sbjct: 5 SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 65.4 bits (160), Expect = 1e-14
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 111
+ + + N+ EL + DV++VL + WW+ R + G P N +
Sbjct: 5 SGALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPY 63
Query: 112 PA 113
PA
Sbjct: 64 PA 65
Score = 64.6 bits (158), Expect = 2e-14
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 200
+ + + N+ EL + DV++VL + WW+ R + G P N + P
Sbjct: 6 GALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPYP 64
Query: 201 A 201
A
Sbjct: 65 A 65
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 65.4 bits (160), Expect = 2e-14
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 58 RCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIPAE 114
+ + + ++ EL L D++ + + GW +L D + G P+ ++
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT 63
Query: 115 TMTA 118
T
Sbjct: 64 RNTV 67
Score = 65.4 bits (160), Expect = 2e-14
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 146 RCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIPAE 202
+ + + ++ EL L D++ + + GW +L D + G P+ ++
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT 63
Query: 203 TMTA 206
T
Sbjct: 64 RNTV 67
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 65.1 bits (159), Expect = 2e-14
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 57 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 111
RR R + YT + DE+ D+ V +E+E+GW D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
Score = 65.1 bits (159), Expect = 2e-14
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 145 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 199
RR R + YT + DE+ D+ V +E+E+GW D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
Score = 42.4 bits (100), Expect = 4e-06
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 11 FDYTA-QEADELTLRKGDLITGIRVQSGGWWEGLLVR 46
YT + DE++ KGD+ GW +R
Sbjct: 12 LPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLR 48
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 65.6 bits (160), Expect = 2e-14
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 130 EADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE----GWWRGRLR 185
A+ + R + + + +E+ D++++ + ++ GW L
Sbjct: 3 SGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD 62
Query: 186 DR-TGVFPSNFVEEIP 200
+ TG+ P+N+V+ +
Sbjct: 63 GQTTGLIPANYVKILG 78
Score = 65.2 bits (159), Expect = 3e-14
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE----GWWRGRLRDR-TGVFPSNF 107
E R + + + +E+ D++++ + ++ GW L + TG+ P+N+
Sbjct: 14 EDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANY 73
Query: 108 VEEIP 112
V+ +
Sbjct: 74 VKILG 78
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 65.6 bits (160), Expect = 2e-14
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RTGVFPSNFV 108
+ + L+ ++ +EL + ++V+ + E WW+ + + G+ P N+V
Sbjct: 13 GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
Query: 109 EEIP 112
+
Sbjct: 73 VVLS 76
Score = 64.4 bits (157), Expect = 6e-14
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 132 DPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RT 188
+ + L+ ++ +EL + ++V+ + E WW+ + +
Sbjct: 5 SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV 64
Query: 189 GVFPSNFVEEIP 200
G+ P N+V +
Sbjct: 65 GLVPKNYVVVLS 76
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 64.5 bits (158), Expect = 3e-14
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNFVEEI 111
R V + + + DEL + D + +L + + WW +L D ++G+ P+ F+E +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
Score = 64.5 bits (158), Expect = 3e-14
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNFVEEI 199
R V + + + DEL + D + +L + + WW +L D ++G+ P+ F+E +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 64.7 bits (158), Expect = 3e-14
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-----RDRTGVFPSN 106
G + L+ + +EL DV V + E+ WW L G P N
Sbjct: 6 QAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHN 65
Query: 107 FVEE 110
++ E
Sbjct: 66 YLAE 69
Score = 63.9 bits (156), Expect = 6e-14
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-----RDRTGVFPSNFV 196
G + L+ + +EL DV V + E+ WW L G P N++
Sbjct: 8 HLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67
Query: 197 EE 198
E
Sbjct: 68 AE 69
Score = 51.6 bits (124), Expect = 2e-09
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTE 53
+D+ ++ +EL+ R GD+ R + WW LL AV +
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQ 59
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 64.2 bits (157), Expect = 4e-14
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 50 AVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNF 107
E+ G L+ Y + D+L + + VL E WW+ + L + G PSN+
Sbjct: 1 GSPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNY 59
Query: 108 VEEI 111
V ++
Sbjct: 60 VAKL 63
Score = 63.8 bits (156), Expect = 5e-14
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNF 195
+ E G L+ Y + D+L + + VL E WW+ + L + G PSN+
Sbjct: 1 GSPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNY 59
Query: 196 VEEI 199
V ++
Sbjct: 60 VAKL 63
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 64.7 bits (158), Expect = 4e-14
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD--RTGVFPSNFVEEI 111
PG +C +T EL DV+ +L E + W+R + + G+ + + E
Sbjct: 16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
Query: 112 PA 113
Sbjct: 76 SG 77
Score = 64.7 bits (158), Expect = 4e-14
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD--RTGVFPSNFVEEI 199
PG +C +T EL DV+ +L E + W+R + + G+ + + E
Sbjct: 16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
Query: 200 PA 201
Sbjct: 76 SG 77
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 65.7 bits (160), Expect = 4e-14
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI-PAET 115
L+ + DEL++ + + + + + W+ + +R G+ P ++V I +
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP 66
Query: 116 MTAESRHRKESNNNEADPAKALAATIE 142
S + + T+E
Sbjct: 67 AKYASVDTYDREQVMKIIDEFKIPTVE 93
Score = 65.0 bits (158), Expect = 7e-14
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI-PAET 203
L+ + DEL++ + + + + + W+ + +R G+ P ++V I +
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP 66
Query: 204 MTAESRHRKESNNNEADPAKALTATIGE 231
S + + T+ +
Sbjct: 67 AKYASVDTYDREQVMKIIDEFKIPTVEQ 94
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 63.9 bits (156), Expect = 5e-14
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 53 EQPGRRCRVLFSYTPANAD--ELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 109
+ + + L+ Y + D E+ N+++ V ++E WW+ R TG+ PSN+V+
Sbjct: 2 DNFIYKAKALYPYDADDDDAYEISFEQNEILQVS-DIEGRWWKARRANGETGIIPSNYVQ 60
Query: 110 EIPAET 115
I
Sbjct: 61 LIDGPE 66
Score = 63.9 bits (156), Expect = 5e-14
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 146 RCRVLFSYTPANAD--ELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAE 202
+ + L+ Y + D E+ N+++ V ++E WW+ R TG+ PSN+V+ I
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQVS-DIEGRWWKARRANGETGIIPSNYVQLIDGP 65
Query: 203 T 203
Sbjct: 66 E 66
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 69.8 bits (169), Expect = 5e-14
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 112 PAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDV 171
+ + ++ N AT R R L+ Y DEL D +
Sbjct: 396 TDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTK 455
Query: 172 LSEV-EEGWWRGRLRD-RTGVFPSNFVEEI 199
+ + E+GW +GRL + + G++P+N+VE I
Sbjct: 456 MEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
Score = 68.3 bits (165), Expect = 2e-13
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 35 QSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWR 93
S G T R R L+ Y DEL D + + + E+GW +
Sbjct: 407 FSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCK 466
Query: 94 GRLRD-RTGVFPSNFVEEI 111
GRL + + G++P+N+VE I
Sbjct: 467 GRLDNGQVGLYPANYVEAI 485
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 63.8 bits (156), Expect = 6e-14
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 112
++ + A +L L +L + + WWR R + G PSN+V
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
Score = 63.8 bits (156), Expect = 6e-14
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 200
++ + A +L L +L + + WWR R + G PSN+V
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 63.3 bits (155), Expect = 6e-14
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGR--LRDRTGVFPSNFVE 109
G +VL++Y + DE+ + D I +++ GW + TG+ P+ ++
Sbjct: 1 GMENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 63.3 bits (155), Expect = 6e-14
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGR--LRDRTGVFPSNFVE 197
G +VL++Y + DE+ + D I +++ GW + TG+ P+ ++
Sbjct: 1 GMENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 5 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+E V + Y ++ DE+T+ GD I+ + +G W
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGW 37
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 68.8 bits (168), Expect = 8e-14
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMT 117
L+ + + EL DVI+V+ WW GR+ D G FP++FV +
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 91
Query: 118 AESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADEL----ELHVNDVIDVLS 173
A+ N+ D ++ + R V+ E+ ++ L
Sbjct: 92 ADDDAPLAGNSGAEDGGAEAQSSKDQ-MRTNVIN--------EILSTERDYIKH----LR 138
Query: 174 EVEEGWWRGRLRDRTGVFPSNFVEEI 199
++ EG+ R + R R +F + I
Sbjct: 139 DICEGYVR-QCRKRADMFSEEQLRTI 163
Score = 67.7 bits (165), Expect = 2e-13
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 115 TMTAESRHRKESNNNEADPAKALAATIEPGRRCRV--LFSYTPANADELELHVNDVIDVL 172
M++ + A+ I G L+ + + EL DVI+V+
Sbjct: 2 AMSSSHHYSHPGGGG---EQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM 58
Query: 173 SEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALTATIGEL 232
WW GR+ D G FP++FV + A+ N+ D ++ ++
Sbjct: 59 DATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQM 118
Query: 233 RAC 235
R
Sbjct: 119 RTN 121
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 63.1 bits (154), Expect = 1e-13
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RTGVFPSNFVEEIP 112
+ L+ ++ +EL + ++V+ + E WW+ + + G+ P N+V +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
Score = 63.1 bits (154), Expect = 1e-13
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RTGVFPSNFVEEIP 200
+ L+ ++ +EL + ++V+ + E WW+ + + G+ P N+V +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 63.2 bits (154), Expect = 1e-13
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 128 NNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD- 186
N+ + L+ Y + ++L D + VL E WW+ R
Sbjct: 9 NSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLAT 67
Query: 187 -RTGVFPSNFVEEI 199
+ G PSN+V +
Sbjct: 68 RKEGYIPSNYVARV 81
Score = 61.3 bits (149), Expect = 6e-13
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 109
L+ Y + ++L D + VL E WW+ R + G PSN+V
Sbjct: 21 AGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVA 79
Query: 110 EI 111
+
Sbjct: 80 RV 81
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 64.0 bits (156), Expect = 1e-13
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-- 183
S++ + L+ Y ++L + +++ E WW R
Sbjct: 9 SSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSI 68
Query: 184 LRDRTGVFPSNFVEEIPAETMTAE-------SRHRKES 214
++G PSN+V PA+++ AE R ES
Sbjct: 69 ATGKSGYIPSNYVV--PADSIQAEEWYFGKMGRKDAES 104
Score = 63.6 bits (155), Expect = 2e-13
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVE 109
L+ Y ++L + +++ E WW R ++G PSN+V
Sbjct: 23 LTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV 82
Query: 110 EIPAETMTAE-------SRHRKES 126
PA+++ AE R ES
Sbjct: 83 --PADSIQAEEWYFGKMGRKDAES 104
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 62.2 bits (152), Expect = 2e-13
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLRDRTGVFPSNFVEEI 111
E L+ + + + L + + + VL G W + ++ G PS ++ +
Sbjct: 2 ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
Score = 61.4 bits (150), Expect = 4e-13
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLRDRTGVFPSNFVEEI 199
L+ + + + L + + + VL G W + ++ G PS ++ +
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 62.7 bits (152), Expect = 3e-13
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRGRL 96
G + R L+ + ++LEL DV+ V GW G
Sbjct: 7 AGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLN 66
Query: 97 R--DRTGVFPSNFVEEIP 112
+ G FP +VE +
Sbjct: 67 ERTRQRGDFPGTYVEFLG 84
Score = 62.3 bits (151), Expect = 4e-13
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 17/75 (22%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRGRLR-- 185
G + R L+ + ++LEL DV+ V GW G
Sbjct: 10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERT 69
Query: 186 DRTGVFPSNFVEEIP 200
+ G FP +VE +
Sbjct: 70 RQRGDFPGTYVEFLG 84
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 61.6 bits (150), Expect = 3e-13
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--------DRTGVFPSNFVEEI 111
L+ Y + E+ + D++ +L+ + WW+ ++ +R G P+ +V+++
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
Score = 61.6 bits (150), Expect = 3e-13
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--------DRTGVFPSNFVEEI 199
L+ Y + E+ + D++ +L+ + WW+ ++ +R G P+ +V+++
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 61.1 bits (149), Expect = 4e-13
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAE 114
+ + + + N+ EL + +DV+++L + WW+ R +G P+N ++ +
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRTP 59
Score = 61.1 bits (149), Expect = 4e-13
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 145 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPAE 202
+ + + + N+ EL + +DV+++L + WW+ R +G P+N ++ +
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRTP 59
Score = 42.2 bits (100), Expect = 4e-06
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 7 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
A ++D+ A+ + EL++ K D++ I WW+
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLE-ILDDRRQWWKV 38
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 61.0 bits (148), Expect = 9e-13
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 49 QAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNF 107
+ + + YT EL++ N+ + +L + + WWR R +RTG PSN+
Sbjct: 24 KNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNY 82
Query: 108 VEE 110
VE
Sbjct: 83 VER 85
Score = 61.0 bits (148), Expect = 1e-12
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-L 184
N+ + + + YT EL++ N+ + +L + + WWR R
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNA 71
Query: 185 RDRTGVFPSNFVEE 198
+RTG PSN+VE
Sbjct: 72 ANRTGYVPSNYVER 85
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 60.0 bits (146), Expect = 1e-12
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 54 QPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 110
L SY P++ +L + + +L + WW+ + + G P NFV +
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 61
Score = 59.6 bits (145), Expect = 2e-12
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 198
L SY P++ +L + + +L + WW+ + + G P NFV +
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 61
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 60.0 bits (146), Expect = 2e-12
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 138 AATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFV 196
+T+ F Y EL++ N+ + +L + + WWR R ++TG PSN+V
Sbjct: 1 GSTMAEEVVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYV 59
Query: 197 EEIP 200
E
Sbjct: 60 ERKN 63
Score = 58.5 bits (142), Expect = 5e-12
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEE 110
T F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 3 TMAEEVVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVER 61
Query: 111 IP 112
Sbjct: 62 KN 63
Score = 42.3 bits (100), Expect = 4e-06
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
FDY AQ+ EL ++K + + + S WW
Sbjct: 14 FDYVAQQEQELDIKKNERLW-LLDDSKSWWRV 44
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 64.5 bits (156), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 45 VRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGV 102
+ + Q ++++ P ADE+ + D+I V +G+ +G R RTG+
Sbjct: 431 LDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGL 490
Query: 103 FPSNFVEEIP 112
+PS V E
Sbjct: 491 YPSYKVREKI 500
Score = 63.0 bits (152), Expect = 1e-11
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIP 200
++++ P ADE+ + D+I V +G+ +G R RTG++PS V E
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI 500
Score = 37.9 bits (87), Expect = 0.002
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR 46
+ + + ADE+ + GD+I G+ +G+ +
Sbjct: 449 YAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRK 484
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 62.6 bits (151), Expect = 4e-12
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 2/131 (1%)
Query: 79 DVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALA 138
V ++ G RLR F S + + + + +
Sbjct: 72 PVPPSPAQPPPGVSPSRLRIGDQEFDS-LPALLEFYKIHYLDTTTLIEPVSRSRQGSGVI 130
Query: 139 ATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 197
E R LF + + ++L D++ + + EE WW + G+ P +VE
Sbjct: 131 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
Query: 198 EIPAETMTAES 208
+ + + +
Sbjct: 191 KYRPASASVSA 201
Score = 60.3 bits (145), Expect = 2e-11
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 58 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAETM 116
R LF + + ++L D++ + + EE WW + G+ P +VE+ +
Sbjct: 138 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 197
Query: 117 TAESRHRKESNNNEADPAKALAATIEPGRRCR 148
+ + N+ EPG +
Sbjct: 198 SVSA----LIGGNQEGSHPQPLGGPEPGPYAQ 225
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 58.8 bits (143), Expect = 5e-12
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 56 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 110
+ YT EL++ N+ + +L + + WWR R RTG PSN+VE
Sbjct: 4 EVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVER 58
Score = 58.8 bits (143), Expect = 5e-12
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 144 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 198
+ YT EL++ N+ + +L + + WWR R RTG PSN+VE
Sbjct: 4 EVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVER 58
Score = 43.0 bits (102), Expect = 2e-06
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DYTAQ+ EL ++K + + + S WW
Sbjct: 11 WDYTAQQDQELDIKKNERLW-LLDDSKTWWRV 41
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 62.0 bits (149), Expect = 6e-12
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 112 PAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDV 171
+ A L + + YT + DEL+L DV+ V
Sbjct: 110 LPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLV 169
Query: 172 LS-----EVEEGWWRG----------RLRDRTGVFPSNFVEEIP 200
+ E +EGW G +L GVFP NF E +P
Sbjct: 170 IPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERVP 213
Score = 60.5 bits (145), Expect = 2e-11
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 15/81 (18%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG------- 94
R + + + YT + DEL+L DV+ V+ E +EGW G
Sbjct: 133 GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWN 192
Query: 95 ---RLRDRTGVFPSNFVEEIP 112
+L GVFP NF E +P
Sbjct: 193 QHKKLEKCRGVFPENFTERVP 213
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 56.6 bits (137), Expect = 2e-11
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 27/87 (31%)
Query: 98 DRTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPAN 157
DR G P+ +V+++ + T L+ Y +
Sbjct: 2 DRQGFVPAAYVKKLDSGT---------------------------GKELVLALYDYQEKS 34
Query: 158 ADELELHVNDVIDVLSEVEEGWWRGRL 184
E+ + D++ +L+ + WW+ +
Sbjct: 35 PREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 52.8 bits (127), Expect = 6e-10
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL 96
+ L+ Y + E+ + D++ +L+ + WW+ +
Sbjct: 17 SGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 48.9 bits (117), Expect = 1e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY + E+T++KGD++T + + WW+
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 55.5 bits (134), Expect = 8e-11
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR 185
S+ + VL Y + + + V+S+ E GWW+
Sbjct: 2 SSGSSGPLP---NPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISL 57
Query: 186 D--RTGVFPSNFVEEI 199
R P V +
Sbjct: 58 STGRESYIPGICVARV 73
Score = 55.5 bits (134), Expect = 9e-11
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 109
VL Y + + + V+S+ E GWW+ R P V
Sbjct: 13 EGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVA 71
Query: 110 EI 111
+
Sbjct: 72 RV 73
Score = 43.6 bits (103), Expect = 2e-06
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
DY + + R+G+ + I GGWW+ + + +
Sbjct: 24 SDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGR 61
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 55.9 bits (135), Expect = 9e-11
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 111
L+ Y + D+L D + VL E WW+ R + G PSN+V +
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV 59
Score = 55.9 bits (135), Expect = 9e-11
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 199
L+ Y + D+L D + VL E WW+ R + G PSN+V +
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV 59
Score = 44.3 bits (105), Expect = 1e-06
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DY + D+L+ +KGD + + +SG WW+
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKA 40
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 55.2 bits (133), Expect = 1e-10
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD----RTGVFPSNFVEEI 111
+ Y + + ++VL GWW ++ D G PSN++E+
Sbjct: 13 YVSIADYE-GDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
Score = 55.2 bits (133), Expect = 1e-10
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD----RTGVFPSNFVEEI 199
+ Y + + ++VL GWW ++ D G PSN++E+
Sbjct: 13 YVSIADYE-GDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
Score = 40.9 bits (96), Expect = 2e-05
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
DY E + ++G + + GWW
Sbjct: 17 ADYEGDE-ETAGFQEGVSMEVLERNPNGWWYC 47
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 57.1 bits (138), Expect = 6e-10
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESR 209
++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+ + +
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWC 67
Query: 210 HRKESNNNEADPAKALTATIGEL 232
+ + I EL
Sbjct: 68 SDLHLLDMLTPTERKRQGYIHEL 90
Score = 55.2 bits (133), Expect = 3e-09
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAES 120
++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+ + +
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Score = 44.4 bits (105), Expect = 1e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
+DYTAQ DEL KG +I + + WW+G
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPDWWKG 40
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 55.1 bits (132), Expect = 9e-10
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 129 NEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-- 186
+ A + R ++++ + A +L L + DV+ + E W+RG L
Sbjct: 2 SSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHK 60
Query: 187 -RTGVFPSNFVEEIPAETMTAESRHRKESNNNEADP-AKALTATIGE 231
G+FP +F+ T E R E+ P A+ +T T+ E
Sbjct: 61 MLQGIFPKSFIHIKEV---TVEKRRNTENIIPAEIPLAQEVTTTLWE 104
Score = 53.9 bits (129), Expect = 3e-09
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 57 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTGVFPSNFVEEIPA 113
R ++++ + A +L L + DV+ + E W+RG L G+FP +F+
Sbjct: 18 RHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQGIFPKSFIHIKEV 76
Query: 114 ETMTAESRHRKESNNNEADP 133
T E R E+ P
Sbjct: 77 ---TVEKRRNTENIIPAEIP 93
Score = 43.2 bits (101), Expect = 2e-05
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVL------FS 64
+++ A +L+L+ GD++ I+ G W+ G L++ + P +
Sbjct: 24 YNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVEKRR 82
Query: 65 YTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 105
T +V L E W + + + F
Sbjct: 83 NTENIIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQ 123
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 52.3 bits (125), Expect = 2e-09
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVEE 110
+ A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 24 IPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Score = 52.3 bits (125), Expect = 2e-09
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVEE 198
+ A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 24 IPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Score = 34.6 bits (79), Expect = 0.003
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 13 YTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRERQ 49
L L GD++ + ++ WWEG +
Sbjct: 27 PPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNE 64
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 52.3 bits (125), Expect = 3e-09
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 53 EQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE---EGWWRGRLRD--------RTG 101
P L Y + L +H V+ V S+++ +W G ++ R G
Sbjct: 19 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78
Query: 102 VFPSNFVEEI 111
FPS+ V E
Sbjct: 79 YFPSSIVRED 88
Score = 51.6 bits (123), Expect = 5e-09
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 146 RCRVLFSYTPANADELELHVNDVIDVLSEVE---EGWWRGRLRD--------RTGVFPSN 194
L Y + L +H V+ V S+++ +W G ++ R G FPS+
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 195 FVEEI 199
V E
Sbjct: 84 IVRED 88
Score = 35.8 bits (82), Expect = 0.002
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 7 ASVEFDYTAQEADELTLRKGDLIT---GIRVQSGGWWEG 42
A DY A + LT+ +G ++ ++ + +W G
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGG 63
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 51.1 bits (122), Expect = 3e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 64 SYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVE 109
A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Score = 51.1 bits (122), Expect = 3e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 152 SYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVE 197
A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Score = 33.8 bits (77), Expect = 0.005
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 13 YTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRERQ 49
L L GD++ + ++ WWEG +
Sbjct: 19 PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNE 56
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 50.5 bits (120), Expect = 7e-09
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRGRLR-- 97
G + R L+ Y ++++LH+ D++ V E GW G
Sbjct: 4 EGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT 63
Query: 98 DRTGVFPSNFVEEI 111
G FP +VE I
Sbjct: 64 GERGDFPGTYVEYI 77
Score = 50.5 bits (120), Expect = 7e-09
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRGRLR-- 185
G + R L+ Y ++++LH+ D++ V E GW G
Sbjct: 4 EGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT 63
Query: 186 DRTGVFPSNFVEEI 199
G FP +VE I
Sbjct: 64 GERGDFPGTYVEYI 77
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 49.7 bits (119), Expect = 3e-07
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 136 ALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLR-DRTGVFPS 193
A+ A+ G C +++ +L DV+ +++ ++ W++ + + R G+ P+
Sbjct: 3 AIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPA 62
Query: 194 NFVEEIPAETMTAESRHRKE 213
N+V+ E + A ++
Sbjct: 63 NYVQ--KREGVKAGTKLSLM 80
Score = 48.5 bits (116), Expect = 6e-07
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 55 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLR-DRTGVFPSNFVEEIP 112
G C +++ +L DV+ +++ ++ W++ + + R G+ P+N+V+
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ--K 67
Query: 113 AETMTAESRHRKE 125
E + A ++
Sbjct: 68 REGVKAGTKLSLM 80
Score = 38.1 bits (89), Expect = 0.002
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+++ +L KGD++T + V W
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTKDPNW 47
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 47.5 bits (113), Expect = 1e-06
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 48 RQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW-RGRLRDRTGVFPSN 106
+E L+ + + + L + + + VL G W + ++ G PSN
Sbjct: 35 LAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSN 94
Query: 107 FVEEI 111
++ +
Sbjct: 95 YITPV 99
Score = 45.5 bits (108), Expect = 6e-06
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 142 EPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW-RGRLRDRTGVFPSNFVEEI 199
L+ + + + L + + + VL G W + ++ G PSN++ +
Sbjct: 41 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 99
Score = 38.2 bits (89), Expect = 0.002
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+D+ A + L++ KG+ + + G W
Sbjct: 50 YDFVASGDNTLSITKGEKLRVLGYNHNGEW 79
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 43.1 bits (101), Expect = 4e-06
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 135 KALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE----EGWWRGRLRDRTGV 190
+L A P + + ++ A ++ L D++ V+ + + + W G
Sbjct: 8 ASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGF 67
Query: 191 FPSNFVE 197
S+F++
Sbjct: 68 VYSSFLK 74
Score = 43.1 bits (101), Expect = 5e-06
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 46 RERQAVTEQ--PGRRCRVLFSYTPANADELELHVNDVIDVLSEVE----EGWWRGRLRDR 99
++ + P + + ++ A ++ L D++ V+ + + + W
Sbjct: 5 SSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVT 64
Query: 100 TGVFPSNFVE 109
G S+F++
Sbjct: 65 KGFVYSSFLK 74
Score = 32.3 bits (73), Expect = 0.032
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIRVQ----SGGWW 40
E ++ A + +++L +GDL+ I+ + S W
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRW 57
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 44.5 bits (105), Expect = 1e-05
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 126 SNNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR 185
++++ + L+ Y +L + + +++ E WW
Sbjct: 67 NSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSL 126
Query: 186 D--RTGVFPSNFVEEIPAETMTAESRHRKESNNNEA 219
+TG PSN+V P++++ AE + + E+
Sbjct: 127 STGQTGYIPSNYV--APSDSIQAEEWYFGKITRRES 160
Score = 44.1 bits (104), Expect = 2e-05
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVF 103
+R L+ Y +L + + +++ E WW +TG
Sbjct: 75 PQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYI 134
Query: 104 PSNFVEEIPAETMTAESRHRKESNNNEA 131
PSN+V P++++ AE + + E+
Sbjct: 135 PSNYV--APSDSIQAEEWYFGKITRRES 160
Score = 36.4 bits (84), Expect = 0.006
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWW 40
+DY ++ +L+ +KG+ + + G WW
Sbjct: 92 YDYESRTETDLSFKKGERLQIVNNTEGDWW 121
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 42.1 bits (99), Expect = 8e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 59 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 112
L+ Y +L + + +++ E WW +TG PSN+V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 42.1 bits (99), Expect = 8e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 147 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 200
L+ Y +L + + +++ E WW +TG PSN+V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 39.0 bits (91), Expect = 0.001
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY ++ +L+ +KG+ + + G WW
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWL 39
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 41.2 bits (97), Expect = 1e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPAETMTAE 119
L+ Y + ++L D + VL E WW+ R + G PSN+V +++ E
Sbjct: 14 LYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV--ARVDSLETE 70
Score = 41.2 bits (97), Expect = 1e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPAETMTAE 207
L+ Y + ++L D + VL E WW+ R + G PSN+V +++ E
Sbjct: 14 LYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV--ARVDSLETE 70
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 41
+DY A ++L+ +KGD + + +SG WW+
Sbjct: 15 YDYEAIHHEDLSFQKGDQMV-VLEESGEWWK 44
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 39.7 bits (92), Expect = 3e-04
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 52 TEQPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVE 109
+ L SY P++ +L + + +L + WW+ + + G P NFV
Sbjct: 8 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVA 66
Query: 110 EIPAETM 116
+ +
Sbjct: 67 KANSLEP 73
Score = 38.9 bits (90), Expect = 5e-04
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 143 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIP 200
L SY P++ +L + + +L + WW+ + + G P NFV +
Sbjct: 11 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN 69
Query: 201 AETM 204
+
Sbjct: 70 SLEP 73
Score = 37.4 bits (86), Expect = 0.001
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQ 49
Y +L KG+ + I QSG WW+ + Q
Sbjct: 19 HSYEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQ 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 6e-04
Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 70/256 (27%)
Query: 2 SSVIEASVEFDYTAQEADEL--------TLRKGDLITGIRVQSGGWWEGLLVRERQAVTE 53
+++IE+S+ E E I + S W++ + V +
Sbjct: 356 TTIIESSLN----VLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNK 410
Query: 54 ----------QPGRRCRV---LFSYTPANADELELH---VN--------DVIDVLSEVEE 89
+ +E LH V+ D D++ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 90 GWW---------RGRLRDRTGVFPS-----NFVEEIPAETMTAESRHRKESNNNEADPAK 135
++ +R +F F+E + RH + N
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--------QKIRHDSTAWNASGSILN 522
Query: 136 ALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPS 193
L + + Y N + E VN ++D L ++EE + D R +
Sbjct: 523 TLQ-------QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 194 NFVEEIPAETMTAESR 209
+ E I E R
Sbjct: 576 D--EAIFEEAHKQVQR 589
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 38.6 bits (89), Expect = 0.001
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 15/66 (22%)
Query: 60 RVLFSYTPANADELELHVNDVIDVLS---------EVEEGWWRGRLRDRT------GVFP 104
R F P+ L DV VL G W R G+ P
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIP 67
Query: 105 SNFVEE 110
+ E
Sbjct: 68 NQSRAE 73
Score = 38.6 bits (89), Expect = 0.001
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 15/66 (22%)
Query: 148 RVLFSYTPANADELELHVNDVIDVLS---------EVEEGWWRGRLRDRT------GVFP 192
R F P+ L DV VL G W R G+ P
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIP 67
Query: 193 SNFVEE 198
+ E
Sbjct: 68 NQSRAE 73
Score = 27.9 bits (61), Expect = 3.4
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 11 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 42
F+ L +GD+ + G +
Sbjct: 11 FELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS 42
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 38.4 bits (90), Expect = 0.001
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 62 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 112
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 38.4 bits (90), Expect = 0.001
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 150 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 200
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 42/242 (17%), Positives = 74/242 (30%), Gaps = 63/242 (26%)
Query: 21 LTLRKGDLITGIRVQSGGWWEGLLVRERQAVTE--QPGRRCRVLF---SYTPAN-ADELE 74
T L+T + + WE V R+A+T G RC + S P+ D LE
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 75 ---------LHVNDV--IDVLSEVEEGWWRGRLRDRTGVF------PSNFVEEI--PAET 115
L ++++ V V + L V N V + P ++
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLV--VSGPPQS 385
Query: 116 MTAESRH-RKESNNNEADPAKALAATIEPGRRCRVLFSY------TPANADELELHVNDV 168
+ + RK + D ++ P ++ FS +P ++ L + +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRI------PFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 169 IDVLSEVEEGWWR------------GR-LRDRTGVFPSNFVEEI-------PAETMTAES 208
L + + G LR +G V+ I T +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 209 RH 210
H
Sbjct: 500 -H 500
Score = 37.3 bits (86), Expect = 0.004
Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 65/203 (32%)
Query: 21 LTLRKGDLITGIRVQSGGWWEGLLVRER-QAVTEQPGRRCRVLFSYTPANADE----LEL 75
LTL G L + V + ++ ++E+ + +P + A DE EL
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP--------TEGFAADDEPTTPAEL 60
Query: 76 ------HVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF---------VEEIPAETMTAES 120
+V+ +++ + G + L F + + ++ E T
Sbjct: 61 VGKFLGYVSSLVE---PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 121 RHR-------------KESNNNEADPAKALAATIEPGR-RCRVLF-------SYTPANAD 159
+ + K + +++ AL + G + +F Y +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIFGGQGNTDDYF----E 171
Query: 160 EL-ELH------VNDVIDVLSEV 175
EL +L+ V D+I +E
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAET 194
Score = 28.9 bits (64), Expect = 1.7
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 32/117 (27%)
Query: 111 IPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADELEL------H 164
+P + S+ +++ N +P + AA EP EL +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEP--------------TTPAELVGKFLGY 67
Query: 165 VNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF---------VEEIPAETMTAESRHRK 212
V+ +++ + G + L F + + ++ E T + ++
Sbjct: 68 VSSLVE---PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 35.2 bits (80), Expect = 0.014
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 14 TAQEADELTLRKGDLITGIRVQSGGWWEGLLVRERQAVTEQPGRRCRVLFSYTPANADEL 73
+EA L G V + + R R F Y + L
Sbjct: 67 IREEAVLFLLDLPK---GEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL 123
Query: 74 ELHVND---VIDVLSEVEEGWWRGRLRDRTG 101
+ + V+D L + G W +
Sbjct: 124 SFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 154
Score = 35.2 bits (80), Expect = 0.016
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 129 NEADPAKALAATIEPGRRCRVLFSYTPANADELELHVND---VIDVLSEVEEGWWRGRLR 185
+ + + + + R F Y + L + + V+D L + G W
Sbjct: 91 KKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150
Query: 186 DRTG 189
+
Sbjct: 151 GKNH 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.029
Identities = 7/25 (28%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 123 RK-ESN----NNEADPAKALAATIE 142
+K +++ +++ PA A+ AT+E
Sbjct: 23 KKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.60
Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 211 RK-ESN----NNEADPAKALTATI 229
+K +++ +++ PA A+ AT+
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 0.68
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 47 ERQAVTEQPGRRCRVLFSYTPANADELELHVNDVID 82
E+QA+ + L Y +A L + ++
Sbjct: 18 EKQALKKLQAS----LKLYADDSAPALA--IKATME 47
Score = 28.0 bits (61), Expect = 1.7
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 11/41 (26%)
Query: 130 EADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVID 170
E K L A+++ Y +A L + ++
Sbjct: 18 EKQALKKLQASLKL---------YADDSAPALA--IKATME 47
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 33.4 bits (75), Expect = 0.058
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 19/125 (15%)
Query: 70 ADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRH--RKESN 127
A + L D I ++ V+ + EE + +
Sbjct: 36 AAKEGLEEGDQILRVNNVD-------FTNII-------REEAVLFLLDLPKGEEVTILAQ 81
Query: 128 NNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVND---VIDVLSEVEEGWWRGRL 184
+ + + + + R F Y + L + + V+D L + G W
Sbjct: 82 KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 141
Query: 185 RDRTG 189
+
Sbjct: 142 IGKNH 146
Score = 32.6 bits (73), Expect = 0.10
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 46 RERQAVTEQPGRRCRVLFSYTPANADELELHVND---VIDVLSEVEEGWWRGRLRDRTG 101
R R F Y + L + + V+D L + G W +
Sbjct: 88 RRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 146
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 30.7 bits (69), Expect = 0.092
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 9 VEFDYTAQEADELTLRKGDLITGIR--VQSGGWWEGLLVRERQAVTEQPG 56
V D++A + EL+++ G + + + GW LVR + Q G
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWC---LVRTTERSPPQEG 68
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 32.0 bits (73), Expect = 0.14
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 148 RVLFSYTPANAD-----ELELHVNDVIDVLSEVEEGWWRGRL------RDRTGVFPSNFV 196
R LF Y L DV+ V+ +E WW+ R D G PS
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64
Query: 197 EEIPAETMTAESRHRKESNNNEADPAKALT 226
E E +++ S+ ++ L+
Sbjct: 65 VE-RREWSRLKAKDWGSSSGSQGREDSVLS 93
Score = 30.9 bits (70), Expect = 0.32
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 60 RVLFSYTPANAD-----ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAE 114
R LF Y L DV+ V+ +E WW+ R ++ + IP
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDS--ETDDIGFIP-- 60
Query: 115 TMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSY 153
S+ R E AK ++ R + SY
Sbjct: 61 -----SKRRVERREWSRLKAKDWGSSSGSQGREDSVLSY 94
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 30.6 bits (68), Expect = 0.41
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 60 RVLFSYTPANADE-------LELHVNDVIDVLSEVEEGWWRGRL---RDRTGVFPSNFVE 109
R SY+ A+ D+ + D + V + WW GRL G PS
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKL 101
Query: 110 EIPAETMTAESRHRKESNNNEADPAKALAATIEP 143
E ++ K + + P P
Sbjct: 102 ENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPP 135
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
FXR2, structura genomics, structural genomics
consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
2bkd_N*
Length = 128
Score = 29.3 bits (65), Expect = 0.49
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 67 PANADELELHVNDVIDVLSEVEE----GWWRGRLRDRTGVF 103
P E+ D ++V S E GWW R+R G F
Sbjct: 53 PPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDF 93
Score = 29.3 bits (65), Expect = 0.49
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 155 PANADELELHVNDVIDVLSEVEE----GWWRGRLRDRTGVF 191
P E+ D ++V S E GWW R+R G F
Sbjct: 53 PPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDF 93
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 29.3 bits (66), Expect = 0.90
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 60 RVLFSYTPANADE-----LELHVNDVIDVLSEVEEGWWRGRL------RDRTGVFPSNFV 108
R LF Y P D L D++ V + ++ WW+ R ++ G+ PS
Sbjct: 9 RALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR 68
Query: 109 EE 110
E
Sbjct: 69 WE 70
Score = 29.3 bits (66), Expect = 0.90
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 148 RVLFSYTPANADE-----LELHVNDVIDVLSEVEEGWWRGRL------RDRTGVFPSNFV 196
R LF Y P D L D++ V + ++ WW+ R ++ G+ PS
Sbjct: 9 RALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR 68
Query: 197 EE 198
E
Sbjct: 69 WE 70
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding,
HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A
{Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A*
2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A
3ll2_A* 3ll1_A
Length = 122
Score = 28.2 bits (63), Expect = 1.1
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 8 SVEFDYTAQ------EADELTLRKGDLITGIRVQSGGWWEGL 43
++ D + T G+ I+ + ++SG + + +
Sbjct: 32 AIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNI 73
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 74
Score = 27.5 bits (60), Expect = 1.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 1 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW 40
GSS +V DY A + +E+ + +G+++ + V
Sbjct: 4 GSSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMC 43
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex
protein TAS3; PIN, rossmann fold, SPOC, alpha-helical
hairpin, heterochrom silencing, RITS, RNAI, argonaute;
2.90A {Saccharomyces cerevisiae}
Length = 207
Score = 28.6 bits (63), Expect = 1.5
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 66 TPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHRKE 125
TP +L++ ND+I+ E G FP N + T++ E H
Sbjct: 111 TPE---DLDMEDNDIIEAHREQIGGLPSLPFLACISDFPENHGTSRRSATVSLERVHELF 167
Query: 126 S---NNNEADPAKALAATIEPGRRCR 148
+ +N + + E CR
Sbjct: 168 TEHWLSNLKNRREKRQELAEEAVYCR 193
Score = 28.2 bits (62), Expect = 2.1
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 154 TPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAETMTAESRHR 211
TP +L++ ND+I+ E G FP N + T++ E H
Sbjct: 111 TPE---DLDMEDNDIIEAHREQIGGLPSLPFLACISDFPENHGTSRRSATVSLERVHE 165
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding,
HIV, sugar binding protein; 2.00A {Griffithsia} SCOP:
b.77.3.1
Length = 138
Score = 27.8 bits (62), Expect = 1.8
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 8 SVEFDYTAQ------EADELTLRKGDLITGIRVQSGGWWEGL 43
++ D + T G+ I+ + ++SG + + +
Sbjct: 48 AIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNI 89
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 28.4 bits (62), Expect = 2.5
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 38 GWWEGLLVRERQAVTEQPGRRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWW 92
+ EGL R + V Q + L D+I + + + GW
Sbjct: 564 TFLEGLRKRSKYVVALQDNPN------PAGEESGFLSFAKGDLIILDHDTGEQVMNSGWA 617
Query: 93 RGRLR--DRTGVFPSNFVEEIPAET 115
G + G FP++ V +P T
Sbjct: 618 NGINERTKQRGDFPTDCVYVMPTVT 642
Score = 28.0 bits (61), Expect = 3.2
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 154 TPANADELELHVNDVIDVLSE-----VEEGWWRGRLR--DRTGVFPSNFVEEIPAET 203
+ L D+I + + + GW G + G FP++ V +P T
Sbjct: 586 AGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVT 642
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 27.6 bits (60), Expect = 4.3
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 109 EEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANADEL-----EL 163
EE + N++ +L + + G R LF Y
Sbjct: 392 EEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSF 451
Query: 164 HVNDVIDVLSEVEEGWWRGRLRD------RTGVFPSNFVEEIPAETMTAESRHRKESN 215
DV+ V+ +E WW+ R G PS E + S
Sbjct: 452 RFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSG 509
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 26.4 bits (58), Expect = 5.8
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 188 TGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALTATIGELR 233
T + FV + + K + +AL L
Sbjct: 113 TAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLE 158
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 26.7 bits (59), Expect = 6.4
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 100 TGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRVLFSYTPANAD 159
G+ + F +E+ + + L + A
Sbjct: 207 AGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVR-------ALRARTVPAG 259
Query: 160 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 199
+ + + D + V EG + + P F E+
Sbjct: 260 AVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFGEM 299
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU;
MCSG,PSI-biology, structural genomics, midwest center
for ST genomics; 2.29A {Helicobacter pylori}
Length = 235
Score = 26.5 bits (59), Expect = 7.0
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 127 NNNEADPAKALAATIEPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD 186
+NN L +E + +++ SY N +N I+V +G L
Sbjct: 54 SNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEV-VLTPQGTLAENLHA 112
Query: 187 RTGVFPSNFVEEIPAETMTAESRHRKESNNNEADPAKALTATIGELRA 234
P+ + T+ A+ + +E N E +A+T G ++A
Sbjct: 113 GGAGIPA-YYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKA 159
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 26.7 bits (60), Expect = 7.0
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 104 PSNFVEEIPAETMTAESRHRKESNNNEADPAKALAATIEPGRRCRV 149
PS F+ EIPA + SR + ++ +A A R
Sbjct: 634 PSRFLNEIPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGDRA 679
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.389
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,716,623
Number of extensions: 224241
Number of successful extensions: 1348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 618
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)