BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10858
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
EF V +G S GK+TLL+ I GL+ I+ G++++ G A VG + Q A++
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIA 236
L++ E ++F + G + + ++ + + VL+L +L +R K LSGGQ++R++
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
++ +P + +LDEP +D +R +M ++ ++ GRT+I T +E A ++ L
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
GR+ P
Sbjct: 208 DAGRVAQVGKP 218
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
EF V +G S GK+TLL+ I GL+ I+ G++++ G A VG + Q A++
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIA 236
L++ E ++F + G + + ++ + + VL+L +L +R K LSGGQ++R++
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
++ +P + +LDEP +D +R +M ++ ++ GRT+I T +E A ++ L
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
GR+ P
Sbjct: 208 DAGRVAQVGKP 218
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
EF V +G S GK+TLL+ I GL+ I+ G++++ G A VG + Q A++
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA 236
L++ E ++F + G + + ++ + + VL+L + L+R K LSGGQ++R++
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
++ +P + +LD+P +D +R +M ++ ++ GRT+I T +E A ++ L
Sbjct: 148 LVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
GR+ P
Sbjct: 208 DAGRVAQVGKP 218
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPA-SIYHKTAGSKVGYMPQE 173
EF +LLG S GKTT L+ I GL+ S+G+I++ L P I+ + + Q
Sbjct: 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLS 232
A++ +T+ + + F + + ++R+ + +L L L R + LSGGQ++R++
Sbjct: 90 YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIEEANDAS 289
AI+ KPQ+ ++DEP +D +R RM LQ +G T+ +T +E
Sbjct: 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEAMTMGD 208
Query: 290 EVAFLYKGRIIAQDSPD 306
+A + +G + SPD
Sbjct: 209 RIAVMNRGVLQQVGSPD 225
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E LLG S +GKTT+L+ I GL+ ++G++W+ G + + VG + Q A+F
Sbjct: 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK--RNVGLVFQNYALF 99
Query: 178 GELTIKETLNFFGMIYG------MDESI--WLFQMRKYSHVLKLPNLERPVKYLSGGQKR 229
+T+ + ++ FG+ MD + L MR S+ + P+ LSGGQ++
Sbjct: 100 QHMTVYDNVS-FGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------ELSGGQQQ 152
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEAND- 287
R++ A+ +PQ+++ DEP +D +R+ + + QV G T + T EEA +
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212
Query: 288 ASEVAFLYKGRIIAQDSPD 306
A V L++G + +P+
Sbjct: 213 ADRVLVLHEGNVEQFGTPE 231
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
+LG + +GK+TL+ I L + +G + V ++ K + +PQE +F T
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-T 432
Query: 182 IKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLP-----NLERPVKYLSGGQKRRLSFTI 235
IKE L + DE + ++ + + ++ LP +ER + SGGQK+RLS
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295
A++ KP+++ILD+ VDP+ KR+ D L+ + KG T + TQ I A A ++ L+
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLH 551
Query: 296 KGRI 299
+G++
Sbjct: 552 EGKV 555
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-- 175
+ +V++G + +GKTTLLK + GL + GEI+ L G PA + VGY+ Q +
Sbjct: 38 KIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF-LDGSPADPF--LLRKNVGYVFQNPSSQ 93
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--RPVKYLSGGQKRRLSF 233
+ G T++E + F I G+DES +++K ++ L L P+ LSGGQK+RL+
Sbjct: 94 IIGA-TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLN-LSGGQKQRLAI 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293
+ + + LDEP +DP ++ ++ +L+ +G+ +I+ T +E +D +
Sbjct: 152 ASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILH 211
Query: 294 LYKGRI 299
+ G I
Sbjct: 212 ISNGTI 217
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG-----SKVGYMPQ 172
E ++GAS GKTTLL+ + G + GEI + G +I+ K ++GY+ Q
Sbjct: 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG---KTIFSKNTNLPVRERRLGYLVQ 87
Query: 173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQK 228
E +F LT+ + + G+ G + + ++ +L+L + E +Y LSGGQ+
Sbjct: 88 EGVLFPHLTVYRNIAY-GLGNGKGRTAQ--ERQRIEAMLELTGISELAGRYPHELSGGQQ 144
Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTTQYIEEA-N 286
+R + A+ P+LI+LDEP +D +R+++ D++ G++ + + EEA
Sbjct: 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204
Query: 287 DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD---------VFYKITNDDGTS------ 331
A +A + +GRI+ SP Y P D VF N DGT+
Sbjct: 205 YADRIAVMKQGRILQTASPHEL---YRQPADLDAALFIGEGIVFPAALNADGTADCRLGR 261
Query: 332 ----SGPPAET 338
SG PA T
Sbjct: 262 LPVQSGAPAGT 272
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 3/210 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E F L+G + AGKTT L+ I L S G + V G + H+ + Y+P+E +
Sbjct: 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR-KLISYLPEEAGAY 100
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIA 236
+ E L F Y S + + + + L ++ V S G R+L A
Sbjct: 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLY 295
++ P+L ILDEP G+D L + + +L+ +G T+++++ + E +A ++
Sbjct: 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 220
Query: 296 KGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
G I+ + + K +Y + +VF ++
Sbjct: 221 NGTIVETGTVEELKERYKAQNIEEVFEEVV 250
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176
R++ VLLG + AGK+ L+ I G+ +GE+ + G + + G +G++PQ+ A+
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG--IGFVPQDYAL 81
Query: 177 FGELTIKETLNFFGMIYGMDESIW---------LFQMRKYSHVLKLPNLERPVKYLSGGQ 227
F L++ + + YG+ + + +H+L +R LSGG+
Sbjct: 82 FPHLSV-----YRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----DRKPARLSGGE 131
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM---TTQYIEE 284
++R++ A++ +P+L++LDEP VD + + + L+ FV + V + T IE
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTHDLIEA 190
Query: 285 ANDASEVAFLYKGRIIAQ 302
A A EVA + GRI+ +
Sbjct: 191 AMLADEVAVMLNGRIVEK 208
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPA-SIYHKTAGSKVGYMPQE 173
EF VLLG S GKTT L+ I GL+ ++G+I++ L P ++ V + Q
Sbjct: 33 EFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQS 92
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS 232
A++ T+ + + F + + + ++R+ + L L L R + LSGGQ++R++
Sbjct: 93 YALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVA 152
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVR-KRMWDLLQVFVGKGRTVI-MTTQYIEEANDASE 290
AI+ +P++ + DEP +D +R K +L ++ G T I +T +E
Sbjct: 153 LGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDR 212
Query: 291 VAFLYKGRIIAQDSPD 306
+A KG + +PD
Sbjct: 213 IAVXNKGELQQVGTPD 228
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSKVGYMP 171
R + L+GA+ AGKTT L AI GL +G+I G PA + ++ + +P
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXG---IALVP 87
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESI-----WLFQMRKYSHVLKLPNLERPVKYL--- 223
+ +F ELT+ E L E I W+F + P L+ +K L
Sbjct: 88 EGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSL--------FPRLKERLKQLGGT 139
Query: 224 -SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
SGG+++ L+ A+ +P+L+ DEP +G+ P++ +++++Q +G T+++ Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K EF VLLG S GKTT L+ I GL+ ++G I+ G Y + + Q
Sbjct: 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF--GDRDVTYLPPKDRNISMVFQSY 92
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
A++ +T+ E + F I + ++R + +L++ L R LSGGQ++R++
Sbjct: 93 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV 152
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--TVIMTTQYIEEANDASEV 291
AI+ +P ++++DEP +D +R M ++ K + T+ +T +E +
Sbjct: 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 292 AFLYKGRIIAQDSP 305
A + +G+++ SP
Sbjct: 213 AVMNRGQLLQIGSP 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K EF VLLG S GKTT L+ I GL+ ++G I+ G Y + + Q
Sbjct: 36 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF--GDRDVTYLPPKDRNISMVFQSY 93
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
A++ +T+ E + F I + ++R + +L++ L R LSGGQ++R++
Sbjct: 94 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV 153
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--TVIMTTQYIEEANDASEV 291
AI+ +P ++++DEP +D +R M ++ K + T+ +T +E +
Sbjct: 154 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 213
Query: 292 AFLYKGRIIAQDSP 305
A + +G+++ SP
Sbjct: 214 AVMNRGQLLQIGSP 227
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E+FV+LG + AGKT L+ I G G I + G + + + ++ Q ++F
Sbjct: 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK--HDIAFVYQNYSLF 84
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
+ +K+ L F + + + + + + L L+R LSGG+++R++ A+
Sbjct: 85 PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL--LDRNPLTLSGGEQQRVALARAL 142
Query: 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQYIEEAND-ASEVAFLY 295
+ P++++LDEP +DP ++ ++L V K + TV+ T EA A +A +
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202
Query: 296 KGRIIAQDSPD 306
G++I P+
Sbjct: 203 DGKLIQVGKPE 213
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E ++ G + +GK+TLL+ + GL + G++ + G Y + + E F
Sbjct: 36 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQYPEDQFF 94
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LSGGQKRRLSFTIA 236
E E Y + + L + L + + V + LSGG+KRR++
Sbjct: 95 AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 154
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLY 295
I+H+P ++ILDEP VG+D + + +++ + G+TVI+ + IE N V L
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 214
Query: 296 KGRIIAQDSPDGFKSKYS 313
KG+ + + F KY
Sbjct: 215 KGKKVFDGTRMEFLEKYD 232
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K EF LLG S +GK+TLL I G+ + G+I+ + K VG + Q
Sbjct: 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNW 84
Query: 175 AMFGELTIKETLNF-FGMIYGMDESI--WLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
A++ +T+ + + F + E I + ++ K H+ KL L R LSGGQ++R+
Sbjct: 85 ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL--LNRYPWQLSGGQQQRV 142
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVR-------KRMWDLLQVFVGKGRTVIMTTQYIEE 284
+ A++ +P++++LDEP +D L+R KR+ L + TV +T E
Sbjct: 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-----TTVYVTHDQAEA 197
Query: 285 ANDASEVAFLYKGRIIAQDSPDG--FKSKY 312
A +A + +G I+ +PD +K KY
Sbjct: 198 LAMADRIAVIREGEILQVGTPDEVYYKPKY 227
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E ++ G + +GK+TLL+ + GL + G++ + G Y + + E F
Sbjct: 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQYPEDQFF 92
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LSGGQKRRLSFTIA 236
E E Y + + L + L + + V + LSGG+KRR++
Sbjct: 93 AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLY 295
I+H+P ++ILDEP VG+D + + +++ + G+TVI+ + IE N V L
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 212
Query: 296 KGRIIAQDSPDGFKSKYS 313
KG+ + + F KY
Sbjct: 213 KGKKVFDGTRMEFLEKYD 230
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
G S GK+T+ + + GEI + G +I + S++G++ Q+ A+ TI+
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIR 93
Query: 184 ETLNFFGMIYGM-----DESIW--LFQMRKYSHVLKLPNL------ERPVKYLSGGQKRR 230
E L YG+ DE +W L S V +P+ ER VK +SGGQ++R
Sbjct: 94 ENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQRQR 147
Query: 231 LSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
L+ A L P++++LDE +D +V+K + L+ KGRT ++ +
Sbjct: 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-----KGRTTLVIAHRLSTIV 202
Query: 287 DASEVAFLYKGRI 299
DA ++ F+ KG+I
Sbjct: 203 DADKIYFIEKGQI 215
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
+ L+G S AGK+T+L+ + +IS G I + G + + + S +G +PQ+ +F
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLPN------LERPVKYLSGGQKRR 230
+ TI + + + + G DE Q + ++ P ER +K LSGG+K+R
Sbjct: 141 ND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQR 198
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
++ IL P +I+LDE +D + + L V RT I+ + +A +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLSTVVNADQ 257
Query: 291 VAFLYKGRIIAQDSPDGFKSK 311
+ + G I+ + + S+
Sbjct: 258 ILVIKDGCIVERGRHEALLSR 278
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW---VLGGHPASIYHKTAGSKVGYMP 171
K EF LLG S GKTT L + G+ + GEI+ VL Y + VG +
Sbjct: 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE-----VGMVF 81
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRR 230
Q A++ +T+ E + F + + ++ + + L + NL +R LSGGQ++R
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR 141
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIEEAND 287
++ A++ +P++++ DEP +D +R M LQ +G +V +T E
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT-SVYVTHDQAEAMTM 200
Query: 288 ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
AS +A +G+++ +PD Y PK
Sbjct: 201 ASRIAVFNQGKLVQYGTPD---EVYDSPK 226
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
K EF ++G S +GK+T+L I L ++GE+++ + K K+G++
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
Q+ + LT E + +I+ ++ + RK + LK+ LE LS
Sbjct: 89 FQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
GGQ++R++ A+ + P +I+ D+P +D +++ LL+ + G+TV++ T I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
A + +L G + ++ GF +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
K EF ++G S +GK+T+L I L ++GE+++ + K K+G++
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
Q+ + LT E + +I+ ++ + RK + LK+ LE LS
Sbjct: 89 FQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
GGQ++R++ A+ + P +I+ D+P +D +++ LL+ + G+TV++ T I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
A + +L G + ++ GF +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
L+G + +GKTT++ ++ ++ +G+I V G I + S +G + Q+ +F T
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-T 444
Query: 182 IKETLNFFGMIYGMDESI-WLFQMRKYSHVLK-LPNLERPV-----KYLSGGQKRRLSFT 234
+KE L + G DE I ++ H +K LP V + LS GQ++ L+ T
Sbjct: 445 VKENLKY-GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503
Query: 235 IAILHKPQLIILDEPCVGVDPLVRKR----MWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
A L P+++ILDE VD K MW L++ G+T I+ + +A
Sbjct: 504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-----GKTSIIIAHRLNTIKNADL 558
Query: 291 VAFLYKGRIIAQDSPDGFKSK 311
+ L G I+ D K
Sbjct: 559 IIVLRDGEIVEMGKHDELIQK 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E +G S GK+TL+ I +++ G+I + G + + +++G + Q+
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL------ERPVKYLSGG 226
+F + T+KE + G DE + +H ++ LP ER VK LSGG
Sbjct: 425 ILFSD-TVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGG 481
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
QK+RLS L+ P ++ILDE +D + + L V + K RT ++ +
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLSTIT 540
Query: 287 DASEVAFLYKGRII 300
A ++ + G I+
Sbjct: 541 HADKIVVIENGHIV 554
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 26/224 (11%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
L+G S GK+T++ + + GEI++ G ++ + S++ + QE +F +
Sbjct: 1108 LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-D 1166
Query: 180 LTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPNL--ERPVKY----------LSGG 226
+I E + IYG+D S+ + Q+ + + + + N E P + LSGG
Sbjct: 1167 CSIAENI-----IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
QK+R++ A++ P++++LDE +D K + + L +GRT I+ +
Sbjct: 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHRLNTVM 1280
Query: 287 DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGT 330
+A +A + G II + + S+ +YK+T T
Sbjct: 1281 NADCIAVVSNGTIIEKGTHTQLMSE------KGAYYKLTQKQMT 1318
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
L+G+S GK+T++ ++ ++ +G+I + G I + V + QE A+F T
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCT 507
Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LPNLERPV-----KYLSGGQKRRLSFTI 235
I+E ++ +E + +M +K LPN + LSGGQK+R++
Sbjct: 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295
A++ P++++LDE +D + L KGRT I+ + +A +
Sbjct: 568 ALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHRLSTIRNADLIISCK 626
Query: 296 KGRII 300
G+++
Sbjct: 627 NGQVV 631
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQEL 174
E F +LG S AGKTT ++ I GL S GE++ L + K+G + Q
Sbjct: 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
A++ LT E + F M + ++ + + +L + + L + LSGGQ++R++
Sbjct: 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVAL 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND------ 287
A++ P L++LDEP +D RM D + V + ++ + T + +
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207
Query: 288 ASEVAFLYKGRIIAQDSPD 306
A V L KG+++ P+
Sbjct: 208 ADRVGVLVKGKLVQVGKPE 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
K EF + G S +GK+T L I L ++GE+++ + K K+G++
Sbjct: 29 KEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
Q+ + LT E + +I+ + + RK + LK LE LS
Sbjct: 89 FQQFNLIPLLTALENVEL-PLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
GGQ++R++ A+ + P +I+ DEP +D +++ LL+ + G+TV++ T I
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
A + +L G + ++ GF +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
+ + ++GAS AGK+TL++ + L+ ++G + V G ++ A ++G + Q
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
+ T+ FG + +D + R+ + +L L L ++ Y LSGGQ
Sbjct: 92 NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 145
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
K+R++ A+ P++++ DE +DP + + +LL+ + G T+++ T ++
Sbjct: 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 205
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
+ VA + G +I QD+ +S PK
Sbjct: 206 RICDCVAVISNGELIEQDT---VSEVFSHPK 233
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGE 179
L+G + +GK+T+ K + + ++G+I + GG + Y++ + S +G +PQ+ +F E
Sbjct: 50 ALVGHTGSGKSTIAKLLYRFYD-AEGDIKI-GGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
Query: 180 LTIKETLNFFGMIYGMDESI--WLFQMRKYSHVLKLPNLERPV-----KYLSGGQKRRLS 232
TIK + +G + DE + + Y + LP + LSGG+++R++
Sbjct: 108 -TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA 165
Query: 233 FTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA 288
+L P+++I DE +D L +K + DL K RT+I+ + + A
Sbjct: 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-----KNRTLIIIAHRLSTISSA 220
Query: 289 SEVAFLYKGRIIAQ 302
+ L KG+I+ +
Sbjct: 221 ESIILLNKGKIVEK 234
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
+++G + +GK+TL+ I G +G ++ + PA +YH + PQ L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMR-------------KYSHVLKLPNL-ERPVK 221
E+T+ E L + G LF + K LKL +L +R
Sbjct: 96 ---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LSGGQ + + A++ P++I++DEP GV P + +++ + KG T ++
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
++ N + ++ G+IIA+ + K+ S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
+++G + +GK+TL+ I G +G ++ + PA +YH + PQ L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETL-------------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
E+T+ E L + F + E + + K LKL +L +R
Sbjct: 96 ---EMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LSGGQ + + A++ P++I++DEP GV P + +++ + KG T ++
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
++ N + ++ G+IIA+ + K+ S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQEL 174
E F +LG S AGKTT ++ I GL S GE++ L + K+G + Q
Sbjct: 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
A++ LT E + F M + ++ + + +L + + L + LSG Q++R++
Sbjct: 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND------ 287
A++ P L++LDEP +D RM D + V + ++ + T + +
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207
Query: 288 ASEVAFLYKGRIIA-------QDSPDGFKSKYSMPKLSDVFYKITND 327
A V L KG+++ D+P + + +++++ K+TN+
Sbjct: 208 ADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNE 254
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 24/205 (11%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--KTAGSKVGYMPQELA-- 175
++L G + AGKTTLL + + + G + + G P + + +T +G++ L
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 176 -MFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSH-VLKL----PNLERPVKYLS 224
GE I +I G +SI ++Q +R +H +LKL ++ + YLS
Sbjct: 110 FQEGERVIDV------VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLS 163
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV--IMTTQYI 282
G+K+R+ A+ +PQ++ILDEP G+D + R+ + +L T+ I T +I
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFI 223
Query: 283 EEAN-DASEVAFLYKGRIIAQDSPD 306
EE + S++ L G+ I Q + +
Sbjct: 224 EEITANFSKILLLKDGQSIQQGAVE 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
+ + ++GAS AGK+TL++ + L+ ++G + V G ++ A ++G + Q
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 114
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
+ T+ FG + +D + R+ + +L L L ++ Y LSGGQ
Sbjct: 115 NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
K+R++ A+ P++++ D+ +DP + + +LL+ + G T+++ T ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 228
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
+ VA + G +I QD+ +S PK
Sbjct: 229 RICDCVAVISNGELIEQDT---VSEVFSHPK 256
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
+ + ++GAS AGK+TL++ + L+ ++G + V G ++ A ++G + Q
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
+ T+ FG + +D + R+ + +L L L ++ Y LSGGQ
Sbjct: 115 NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
K+R++ A+ P++++ D+ +DP + + +LL+ + G T+++ T +
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVK 228
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
+ VA + G +I QD+ +S PK
Sbjct: 229 RICDCVAVISNGELIEQDT---VSEVFSHPK 256
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 29/196 (14%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
L+G S +GK+T+L ++ L + + G I + G + SK+G + QE +F +
Sbjct: 406 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCS 464
Query: 182 IKETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLER--PVKY----------LSGGQ 227
I E + YG D+ S+ ++++ + V R P + LSGGQ
Sbjct: 465 IAENI-----AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 519
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
K+R++ A+L P++++LDE +D LV++ + L+ GRTV++ ++
Sbjct: 520 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-----GRTVLVIAHHLS 574
Query: 284 EANDASEVAFLYKGRI 299
+A+ VA L +G+I
Sbjct: 575 TIKNANMVAVLDQGKI 590
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 48/218 (22%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
KR E +LG + GK+TL + G+ S G I P +
Sbjct: 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-----------------DNKPIDY 74
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------LKLPNLE----------- 217
+ G + ++E++ G+++ D LF Y V +KLP E
Sbjct: 75 SRKGIMKLRESI---GIVF-QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR 130
Query: 218 --------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKRMWDLLQVF 268
+P LS GQK+R++ ++ +P+++ILDEP G+DP+ V + M L+++
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYK-GRIIAQDSP 305
G T+I+ T I+ + F+ K GR+I Q +P
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
+++G + +GK+TL+ I G +G ++ + PA +YH + PQ L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETL-------------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
E+T+ E L + F + E + + K LKL +L +R
Sbjct: 96 ---EMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LSGGQ + + A++ P++I++D+P GV P + +++ + KG T ++
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
++ N + ++ G+IIA+ + K+ S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGSKVGYMPQELA 175
E V++G S +GK+T L+ + L++ +GEI + G + +VG + Q
Sbjct: 30 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 89
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVKY---LSGGQKR 229
+F +T+ + + M W + + + L + ++ Y LSGGQ +
Sbjct: 90 LFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ 145
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
R++ A+ +P++++ DEP +DP + + +++ +G T+++ T + A +
Sbjct: 146 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 205
Query: 290 E-VAFLYKGRIIAQDSPD 306
+ V F+ G II + P+
Sbjct: 206 DRVLFMDGGYIIEEGKPE 223
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
L+G S +GK+T+L ++ L + + G I + G + SK+G + QE +F +
Sbjct: 375 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCS 433
Query: 182 IKETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLER--PVKY----------LSGGQ 227
I E + YG D+ S+ ++++ + V R P + LSGGQ
Sbjct: 434 IAENIA-----YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
K+R++ A+L P++++LDE +D LV++ + L+ GRTV++ +
Sbjct: 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-----GRTVLVIAHRLS 543
Query: 284 EANDASEVAFLYKGRI 299
+A+ VA L +G+I
Sbjct: 544 TIKNANMVAVLDQGKI 559
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGSKVGYMPQELA 175
E V++G S +GK+T L+ + L++ +GEI + G + +VG + Q
Sbjct: 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVKY---LSGGQKR 229
+F +T+ + + M W + + + L + ++ Y LSGGQ +
Sbjct: 111 LFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ 166
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
R++ A+ +P++++ DEP +DP + + +++ +G T+++ T + A +
Sbjct: 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 226
Query: 290 E-VAFLYKGRIIAQDSPD 306
+ V F+ G II + P+
Sbjct: 227 DRVLFMDGGYIIEEGKPE 244
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K + L+G S GK+T ++ + L + G + + G +I + +G + QE
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 175 AMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPNL------ERPVKYLSGGQ 227
+F TI E + + MDE + + Y ++KLP+ ER + LSGGQ
Sbjct: 474 VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287
K+R++ A++ P++++LDE +D + L +GRT I+ + +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN 590
Query: 288 ASEVAFLYKGRIIAQDSPD 306
A +A G I+ Q + D
Sbjct: 591 ADVIAGFDGGVIVEQGNHD 609
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K+ + L+G+S GK+T+++ + + G +++ G + + +++G + QE
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER-----PVKY------- 222
+F + +I E + YG + + ++ + K N+ + P KY
Sbjct: 1117 ILF-DCSIAENIA-----YGDNSRVVSYE--EIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 223 ---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQK+R++ A++ +P +++LDE +D K + + L +GRT I+
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIA 1227
Query: 280 QYIEEANDASEVAFLYKGRI 299
+ +A + + G++
Sbjct: 1228 HRLSTIQNADLIVVIQNGKV 1247
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K + L+G S GK+T ++ + L + G + + G +I + +G + QE
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 175 AMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPNL------ERPVKYLSGGQ 227
+F TI E + + MDE + + Y ++KLP+ ER + LSGGQ
Sbjct: 474 VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287
K+R++ A++ P++++LDE +D + L +GRT I+ + +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN 590
Query: 288 ASEVAFLYKGRIIAQDSPD 306
A +A G I+ Q + D
Sbjct: 591 ADVIAGFDGGVIVEQGNHD 609
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K+ + L+G+S GK+T+++ + + G +++ G + + +++G + QE
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER-----PVKY------- 222
+F + +I E + YG + + ++ + K N+ + P KY
Sbjct: 1117 ILF-DCSIAENIA-----YGDNSRVVSYE--EIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 223 ---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQK+R++ A++ +P +++LDE +D K + + L +GRT I+
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIA 1227
Query: 280 QYIEEANDASEVAFLYKGRI 299
+ +A + + G++
Sbjct: 1228 HRLSTIQNADLIVVIQNGKV 1247
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT-IKETL 186
+GK+T L+ I L+ S+G I V G + + K KV Q + LT + +
Sbjct: 43 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF 102
Query: 187 NFFGMIY----GMDESIWLFQMRKYS-------HVLKLPNLER-----PVKYLSGGQKRR 230
N + + M+ I + + K+ ++ K+ ER PV +LSGGQ++R
Sbjct: 103 NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV-HLSGGQQQR 161
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS 289
+S A+ +P +++ DEP +DP + + ++Q +G+T+++ T + A +S
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221
Query: 290 EVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318
V FL++G+I + P+ P+L
Sbjct: 222 HVIFLHQGKIEEEGDPEQVFGNPQSPRLQ 250
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQNSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE N G+ Y DE +Y V+K LE +
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQNSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE N G+ Y DE +Y V+K LE +
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
L+G + +GK+T+ + L + G++ +L G P Y H ++V + QE +FG
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
+ +E + + E I M +H + P + LSGGQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
A++ KP+L+ILD +D + R+ LL + RTV++ TQ + A A +
Sbjct: 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
FL +G + Q +
Sbjct: 227 LFLKEGSVCEQGT 239
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 83
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + FG+ Y DE +Y V+K LE +
Sbjct: 84 ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 188 SKMEHLKKADKILILHEG 205
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 44 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 95
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + FG+ Y DE +Y V+K LE +
Sbjct: 96 ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
L+G + +GK+T+ + L + G++ +L G P Y H ++V + QE +FG
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
+ +E + + E I M +H + P + LSGGQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
A++ KP+L+ILD+ +D + R+ LL + RTV++ T + A A +
Sbjct: 167 LARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
FL +G + Q +
Sbjct: 227 LFLKEGSVCEQGT 239
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 83
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE N G+ Y DE +Y V+K LE +
Sbjct: 84 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 187 SKMEHLKKADKILILHEG 204
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAM 176
E L+G + +GK+T+ + L + G++ +L G P Y H+ +V + QE +
Sbjct: 44 EVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQYEHRYLHRQVAAVGQEPQV 102
Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKR 229
FG +++E + + E I ++ +H + LP ++ LSGGQ++
Sbjct: 103 FGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 161
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDA 288
++ A++ KP ++ILD+ +D + ++ LL + R+V++ TQ++ A
Sbjct: 162 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA 221
Query: 289 SEVAFLYKGRI 299
+ FL G I
Sbjct: 222 DHILFLEGGAI 232
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + I G+ + +Y V+K LE +
Sbjct: 114 ------TIKENI-----IAGVS-----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 9/181 (4%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
G + GKTTLLK I +GEI + G P + K G K+ ++P+E+ + +++++
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPIT---KVKG-KIFFLPEEIIVPRKISVE 96
Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243
+ L +YG+ + ++ +++ +L++ + LS G RR+ +L ++
Sbjct: 97 DYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 154
Query: 244 IILDEPCVGVDPLVR-KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+LD+P V +D + K + +L++ KG +I + + + D +E Y +I +
Sbjct: 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC-DVNENLHKYSTKIDKK 213
Query: 303 D 303
D
Sbjct: 214 D 214
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----AGSKVGYM 170
K+ EF ++GAS +GK+TLL + L ++G++++ G K K+G++
Sbjct: 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFV 87
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR 229
Q + ELT E + + G + + L L + L R LSGG+++
Sbjct: 88 FQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQ 147
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
R++ A+ ++P L+ DEP +D KR+ D+ G +++M T E A
Sbjct: 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTH 207
Query: 290 EVAFLYKGRIIAQ 302
+ G+++ +
Sbjct: 208 RTLEMKDGKVVGE 220
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + FG+ Y DE +Y V+K LE +
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LS GQ+ ++S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E ++G + AGK+TLL+ + G + S GE +LG + S K M Q +
Sbjct: 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97
Query: 178 GELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR--LSFT 234
++ E + Y G + L Q+ + L L +R + LSGG+++R L+
Sbjct: 98 FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA--QRDYRVLSGGEQQRVQLARV 155
Query: 235 IAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS- 289
+A L +PQ + LDEP +D ++ LL+ + + + + N A+
Sbjct: 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV--LHDLNLAAL 213
Query: 290 ---EVAFLYKGRIIAQDSPD 306
+ L +G+++A +P+
Sbjct: 214 YADRIMLLAQGKLVACGTPE 233
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
L+G + +GK+T+ + L + G++ +L G P Y H ++V + QE +FG
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
+ +E + + E I M +H + P + L+ GQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
A++ KP+L+ILD +D + R+ LL + RTV++ TQ + A A +
Sbjct: 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
FL +G + Q +
Sbjct: 227 LFLKEGSVCEQGT 239
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 196
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQ 220
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 196
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQ 220
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 194
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 195 AHRLSTVKNADRIIVMEKGKIVEQ 218
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQ 224
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E ++LG + +GKTTLL+AI GL S G I++ G I + S +P+ +
Sbjct: 31 EKVIILGPNGSGKTTLLRAISGLLPYS-GNIFINGMEVRKIRNYIRYST--NLPEAYEI- 86
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTI 235
+T+ + + + + G+D ++L ++ LKL L R + LS GQ + ++
Sbjct: 87 -GVTVNDIVYLYEELKGLDRDLFLEMLK----ALKLGEEILRRKLYKLSAGQSVLVRTSL 141
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
A+ +P+++ LDEP VD R + ++ + G+ I+ T ++ N
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDMLN 189
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 194
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 195 AARLSTVKNADRIIVMEKGKIVEQ 218
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+R + + G++ AGKT+LL I+G S+G+I H I + S + MP
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE N G+ Y DE +Y V+K LE +
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LS GQ+ ++S A+ L +LD P +D L K +++ + +T I+ T
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I DE +D ++ + M + KGRTVI+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 201 AARLSTVKNADRIIVMEKGKIVEQ 224
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E + G++ +GKT+LL I+G S+G I H + + S + MP
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + FG+ Y DE +Y V+K L++ +
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D +++++ + +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
++ Y + ++ ++T+ E L FF I + ++ + +V L +P LSG
Sbjct: 753 EITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYV----KLGQPATTLSG 808
Query: 226 GQKRRLSFTIAILHKPQ---LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
G+ +R+ + + L ILDEP VG+ +++ ++L V +G TVI+ +
Sbjct: 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868
Query: 283 EEANDASEVAFL------YKGRIIAQDSPD 306
+ +A + L G I+A +P+
Sbjct: 869 DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 211 LKLPNLERPVKYLSGG--QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
L+ L R LSGG Q+ RL+ I + +LDEP +G+ P +R+ L+
Sbjct: 453 LEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512
Query: 269 VGKGRTVIMTTQYIEEANDASEV 291
G TVI+ E +A +
Sbjct: 513 RDLGNTVIVVEHDEEVIRNADHI 535
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E + G++ +GKT+LL I+G S+G I H + + S + MP
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + FG+ Y DE +Y V+K L++ +
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D +++++ + +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+V Y + +A ++T+++ L+FF I + + Y L L +P LSG
Sbjct: 793 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL----YDVGLGYMKLGQPATTLSG 848
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
G+ +R+ A LH+ L ILDEP G+ R+ D+L V G TV++
Sbjct: 849 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
++ A + L G+I+A +P+
Sbjct: 908 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
L R LSGG+ +R+ I + L +LDEP +G+ R+ L+ G
Sbjct: 497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG 556
Query: 273 RTVIMTTQYIEEANDASEV-------AFLYKGRIIAQDSPD 306
T+I+ ++ E+ A++ A ++ G ++A +P+
Sbjct: 557 NTLIV-VEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPE 596
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+V Y + +A ++T+++ L+FF I + + Y L L +P LSG
Sbjct: 491 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL----YDVGLGYMKLGQPATTLSG 546
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
G+ +R+ A LH+ L ILDEP G+ R+ D+L V G TV++
Sbjct: 547 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
++ A + L G+I+A +P+
Sbjct: 606 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 636
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
L R LSGG+ +R+ I + L +LDEP +G+ R+ L+ G
Sbjct: 195 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG 254
Query: 273 RTVIMTTQYIEEANDASEV-------AFLYKGRIIAQDSPD 306
T+I+ ++ E+ A++ A ++ G ++A +P+
Sbjct: 255 NTLIV-VEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPE 294
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++R++ A+++ P+++I D+ +D ++ + M + KGRTVI+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
+ +A + + KG+I+ Q
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQ 224
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
LLG + +GK+TLL A + L N ++GEI + G SI + G +PQ++ +F T
Sbjct: 52 LLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG-T 109
Query: 182 IKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234
++ L+ D+ IW ++ S + + P L LS G K+ +
Sbjct: 110 FRKNLDPNAA--HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167
Query: 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEVAF 293
++L K ++++LDEP +DP+ + + L Q F TVI+ IE + +
Sbjct: 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--TVILCEARIEAMLECDQFLV 225
Query: 294 LYKGRIIAQDS 304
+ + ++ DS
Sbjct: 226 IEENKVRQYDS 236
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+V Y + +A + T+++ L+FF I + + Y L L +P LSG
Sbjct: 793 EVTYKGKNIAEVLDXTVEDALDFFASIPKIKRKLETL----YDVGLGYXKLGQPATTLSG 848
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
G+ +R+ A LH+ L ILDEP G+ R+ D+L V G TV++
Sbjct: 849 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
++ A + L G+I+A +P+
Sbjct: 908 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
L R LSGG+ +R+ I + L +LDEP +G+ R+ L+ G
Sbjct: 497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLG 556
Query: 273 RTVIMTTQYIEEANDASEV-------AFLYKGRIIAQDSPD 306
T+I+ ++ E+ A++ A ++ G ++A +P+
Sbjct: 557 NTLIV-VEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPE 596
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E + G++ +GKT+LL I+G S+G I H + + S + MP
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE N G+ Y DE +Y V+K L++ +
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D +++++ + +T I+ T
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 217 SKMEHLRKADKILILHQG 234
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMP 171
+ + +LG + GK+TLL ++G+ QG+I V +G P + S Y
Sbjct: 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP-----QFFSSPFAYSV 83
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
++ + G T +N F D + + Q Y ++ L +R LSGGQ++ +
Sbjct: 84 LDIVLMGRST---HINTFAKPKSHDYQVAM-QALDYLNLTHLA--KREFTSLSGGQRQLI 137
Query: 232 SFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMTTQ 280
AI + +LI+LDEP +D +V + DL Q + TV+ TT
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ---SQNMTVVFTTH 187
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
K+ E ++G + GKTT +K + G++ ++G+I W L V Y PQ
Sbjct: 310 KKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL--------------TVAYKPQY 355
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
+ E T+ E L+ ++ + + ++ K ++ L +R V LSGG+ +R++
Sbjct: 356 IKADYEGTVYELLSKIDA-SKLNSNFYKTELLKPLGIIDL--YDREVNELSGGELQRVAI 412
Query: 234 TIAILHKPQLIILDEPCVGVD 254
+L + +LDEP +D
Sbjct: 413 AATLLRDADIYLLDEPSAYLD 433
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 203 QMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
++ + L+L N LER +++LSGG+ +R++ A+L DEP +D +R+R+
Sbjct: 138 KLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD--IRQRL 195
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMFGEL 180
L+G S +GK+T+ I +I +GEI ++ GH Y + ++V + Q + +F +
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGEI-LMDGHDLREYTLASLRNQVALVSQNVHLFND- 431
Query: 181 TIKETLNFFG--------------MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
T+ + + M Y MD + K + L E V LSGG
Sbjct: 432 TVANNIAYARTEQYSREQIEEAARMAYAMDF------INKMDNGLDTVIGENGV-LLSGG 484
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIE 283
Q++R++ A+L ++ILDE +D + + D LQ K RT ++ +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLS 540
Query: 284 EANDASEVAFLYKGRII 300
A E+ + G I+
Sbjct: 541 TIEKADEIVVVEDGVIV 557
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 145 QGEIWVLGG--------HPASIYHKTAGS----KVGYMPQELAMFGELTIKETLNFFGMI 192
QGE WV+ P + H T + +V Y + +A LT+ E +FF
Sbjct: 645 QGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA-- 702
Query: 193 YGMDESIWLFQMRKYSHV-LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ---LIILDE 248
DES + V L L +P LSGG+ +R+ + + + +LDE
Sbjct: 703 ---DESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMT---TQYIEEAN---DASEVAFLYKGRIIAQ 302
P G+ P +R+ L V G TVI Q + ++ D A GR++AQ
Sbjct: 760 PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819
Query: 303 DSP 305
+P
Sbjct: 820 GTP 822
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E + G++ +GKT+LL I+G S+G I H + + S + MP
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + I G+ + +Y V+K L++ +
Sbjct: 114 ------TIKENI-----ISGVS-----YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D +++++ + +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
++ E + G++ +GKT+LL I+G S+G I H + + S + MP
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
TIKE + I G+ + +Y V+K L++ +
Sbjct: 114 ------TIKENI-----IRGVS-----YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGGQ+ R+S A+ L +LD P +D +++++ + +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
+E A ++ L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
++ E ++G + GKTT +K + G++ ++G++ W L V Y PQ
Sbjct: 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--------------TVAYKPQY 425
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
+ E T+ E L+ ++ + + ++ K ++ L +R V+ LSGG+ +R++
Sbjct: 426 IKAEYEGTVYELLSKIDS-SKLNSNFYKTELLKPLGIIDL--YDRNVEDLSGGELQRVAI 482
Query: 234 TIAILHKPQLIILDEPCVGVD 254
+L + +LDEP +D
Sbjct: 483 AATLLRDADIYLLDEPSAYLD 503
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L+R + LSGG+ +R++ A+L K DEP +D R ++ +++ +G+ V
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 276 IMTTQYIEEANDASEVAFLYKG 297
++ + + S+V + G
Sbjct: 282 LVVEHDLAVLDYLSDVIHVVYG 303
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
++ E ++G + GKTT +K + G++ ++G++ W L V Y PQ
Sbjct: 366 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--------------TVAYKPQY 411
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
+ E T+ E L+ ++ + + ++ K ++ L +R V+ LSGG+ +R++
Sbjct: 412 IKAEYEGTVYELLSKIDS-SKLNSNFYKTELLKPLGIIDL--YDRNVEDLSGGELQRVAI 468
Query: 234 TIAILHKPQLIILDEPCVGVD 254
+L + +LDEP +D
Sbjct: 469 AATLLRDADIYLLDEPSAYLD 489
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L+R + LSGG+ +R++ A+L K DEP +D R ++ +++ +G+ V
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 276 IMTTQYIEEANDASEVAFLYKG 297
++ + + S+V + G
Sbjct: 268 LVVEHDLAVLDYLSDVIHVVYG 289
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKY-LSGGQKRRLSFTIAILH 239
+ETL+ F M+E I L LK+P L R V SGG+K+R +
Sbjct: 131 QETLDRFDFQDLMEEKIAL---------LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 181
Query: 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY--IEEANDASEVAFLYKG 297
+P+L ILDE G+D K + D + R+ I+ T Y I + V LY+G
Sbjct: 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 241
Query: 298 RII 300
RI+
Sbjct: 242 RIV 244
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKY-LSGGQKRRLSFTIAILH 239
+ETL+ F M+E I L LK+P L R V SGG+K+R +
Sbjct: 112 QETLDRFDFQDLMEEKIAL---------LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 162
Query: 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY--IEEANDASEVAFLYKG 297
+P+L ILDE G+D K + D + R+ I+ T Y I + V LY+G
Sbjct: 163 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222
Query: 298 RII 300
RI+
Sbjct: 223 RIV 225
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMFGEL 180
L+G S +GK+T+ I +I +G I ++ GH Y + ++V + Q + +F +
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLFND- 431
Query: 181 TIKETLNFFG--------------MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
T+ + + M Y MD + K + L E V LSGG
Sbjct: 432 TVANNIAYARTEEYSREQIEEAARMAYAMDF------INKMDNGLDTIIGENGV-LLSGG 484
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIE 283
Q++R++ A+L ++ILDE +D + + D LQ K RT ++ +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLS 540
Query: 284 EANDASEVAFLYKGRII 300
A E+ + G I+
Sbjct: 541 TIEQADEIVVVEDGIIV 557
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQY 281
LSGG K+R+ +A+L P ++ILDEP +D L + + LL+ + T+I T
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 282 IEEAND-ASEVAFLYKGRIIAQDS 304
I A + A +VA +Y G ++ +S
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNS 238
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK-VGYMPQELAMFGEL 180
L+G S +GK+T+ ++ G I L GH Y T + + Q + +F +
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431
Query: 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LPNLERPVKY--------LSGGQKRRL 231
TI + + E I Q + +H ++ + N+ + + LSGGQ++R+
Sbjct: 432 TIANNIAYAAEGEYTREQIE--QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIEEANDA 288
+ A+L ++ILDE +D + + D LQ K +TV++ + A
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQA 545
Query: 289 SEVAFLYKGRII 300
E+ + +G II
Sbjct: 546 DEILVVDEGEII 557
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 112 KIPQVILVS-HDEELKDAAD 130
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 263 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 322
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 323 KIPQVILVS-HDEELKDAAD 341
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 303 KIPQVILVS-HDEELKDAAD 321
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 78 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 137
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 138 KIPQVILVS-HDEELKDAAD 156
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 83 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 142
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 143 KIPQVILVS-HDEELKDAAD 161
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQK------RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +L GG++ RL+ ++ + + L+ILDEP +D R+++ +++ ++
Sbjct: 48 ERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 107
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 108 KIPQVILVS-HDEELKDAAD 126
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 78/201 (38%), Gaps = 40/201 (19%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-------HKTAGSKVGYM 170
E L+G + AGK+TLL + G+ + +G I G P + H+ S+
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTS-GKGSI-QFAGQPLEAWSATKLALHRAYLSQQQTP 84
Query: 171 PQELAMFGELTIK-------ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
P ++ LT+ E LN +D+ L R L
Sbjct: 85 PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------------KLGRSTNQL 127
Query: 224 SGGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
SGG+ +R+ +L QL++LD+P +D + + +L +G ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIV 187
Query: 277 MTTQYIEEANDASEVAFLYKG 297
M++ + + A+L KG
Sbjct: 188 MSSHDLNHTLRHAHRAWLLKG 208
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 78/201 (38%), Gaps = 40/201 (19%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-------HKTAGSKVGYM 170
E L+G + AGK+TLL + G+ + +G I G P + H+ S+
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTS-GKGSI-QFAGQPLEAWSATKLALHRAYLSQQQTP 84
Query: 171 PQELAMFGELTIK-------ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
P ++ LT+ E LN +D+ L R L
Sbjct: 85 PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------------KLGRSTNQL 127
Query: 224 SGGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
SGG+ +R+ +L QL++LD+P +D + + +L +G ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIV 187
Query: 277 MTTQYIEEANDASEVAFLYKG 297
M++ + + A+L KG
Sbjct: 188 MSSHDLNHTLRHAHRAWLLKG 208
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E V++G + GKTTL+K + G +G+ V PQ++A
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ-------------DIPKLNVSMKPQKIAPK 425
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
T+++ FF I G + FQ + +++ V++LSGG+ +R++ +A+
Sbjct: 426 FPGTVRQL--FFKKIRGQFLNPQ-FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL 482
Query: 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
+ ++DEP +D R +++ F+
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 204 MRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
+++Y +L+L N L+R ++ LSGG+ +R + ++ + + + + DEP +D V++R+
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD--VKQRL- 258
Query: 263 DLLQVFVGKGRTVIMTTQYI 282
+ Q+ R+++ T+Y+
Sbjct: 259 NAAQII----RSLLAPTKYV 274
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+V Y + ++ +++I+E FF I G+ + +V L +P LSG
Sbjct: 811 EVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYV----RLGQPAPTLSG 866
Query: 226 GQKRRLSFTIAILHKPQ---LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
G+ +R+ + + + ILDEP G+ +++ +++ V KG TVI+ +
Sbjct: 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL 926
Query: 283 E 283
+
Sbjct: 927 D 927
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR 230
P+E A+ G++ +KE + G + + L+ +L R LSGG+ +R
Sbjct: 485 PREQAIAGQV-LKEIRSRLGFLLDVG--------------LEYLSLSRAAATLSGGEAQR 529
Query: 231 LSFTIAILHK--PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ---YIEEA 285
+ I L +LDEP +G+ +R+ + L G T+I+ IE A
Sbjct: 530 IRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHA 589
Query: 286 N---DASEVAFLYKGRII 300
+ D A + GRI+
Sbjct: 590 DWIVDIGPGAGEHGGRIV 607
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
++ LSGGQK +L +P LI+LDEP +D + L+ F +G +I+T
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITH 956
Query: 280 QYIEEANDASEVAFLYKGRI 299
N EV + GR+
Sbjct: 957 SAEFTKNLTEEVWAVKDGRM 976
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
KR + + G + GK+TL++AI + G++ G P +T Y+ ++
Sbjct: 459 KRARRYGICGPNGCGKSTLMRAI------ANGQV---DGFPTQEECRTV-----YVEHDI 504
Query: 175 AMFGELTIKETLNF-FGMIYGMDESIW--LFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
G + L+F F G E+I L + ++ +P + LSGG K +L
Sbjct: 505 D--GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKL 557
Query: 232 SFTIAILHKPQLIILDEPCVGVDPL 256
+ A+L +++LDEP +D +
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTV 582
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
++ LSGGQK +L +P LI+LDEP +D + L+ F +G +I+T
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITH 956
Query: 280 QYIEEANDASEVAFLYKGR 298
N EV + GR
Sbjct: 957 SAEFTKNLTEEVWAVKDGR 975
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256
P+ LSGG K +L+ A+L +++LDEP +D +
Sbjct: 545 PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 582
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
++ LSGGQK +L +P LI+LDEP +D + L+ F +G +I+T
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITH 950
Query: 280 QYIEEANDASEVAFLYKGR 298
N EV + GR
Sbjct: 951 SAEFTKNLTEEVWAVKDGR 969
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256
P+ LSGG K +L+ A+L +++LDEP +D +
Sbjct: 539 PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 576
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 45/163 (27%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
++G GK++LL A++ + +G + + G V Y+PQ+ A
Sbjct: 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQ-AWIQ 78
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLK----LPNLE------------RPV 220
+++E + FG Q+ + Y V++ LP+LE + V
Sbjct: 79 NDSLRENI-LFGC-----------QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGV 126
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
LSGGQK+R+S A+ + + D+P VD V K +++
Sbjct: 127 N-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 30/148 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI----WVLGGHPASIYHKTAGSKVGYM 170
K E +LG + GKTT + +VG +G + +L P I+ G+ Y+
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYL 351
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER----PVKYLSGG 226
E K+ L+ S W F+ V K NL R V LSGG
Sbjct: 352 --------ENASKDALS---------TSSWFFE-----EVTKRLNLHRLLESNVNDLSGG 389
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVD 254
+ ++L + + L +LD+P +D
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLD 417
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 40/201 (19%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-------HKTAGSKVGYM 170
E L+G + AGK+TLL G + +G I G P + H+ S+
Sbjct: 27 EILHLVGPNGAGKSTLLARXAGXTS-GKGSI-QFAGQPLEAWSATKLALHRAYLSQQQTP 84
Query: 171 PQELAMFGELTIK-------ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
P ++ LT+ E LN +D+ L R L
Sbjct: 85 PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------------KLGRSTNQL 127
Query: 224 SGGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
SGG+ +R+ +L QL++LDEP +D + + +L +G ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIV 187
Query: 277 MTTQYIEEANDASEVAFLYKG 297
++ + + A+L KG
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKG 208
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 40/201 (19%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-------HKTAGSKVGYM 170
E L+G + AGK+TLL G + +G I G P + H+ S+
Sbjct: 27 EILHLVGPNGAGKSTLLARXAGXTS-GKGSI-QFAGQPLEAWSATKLALHRAYLSQQQTP 84
Query: 171 PQELAMFGELTIK-------ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
P ++ LT+ E LN +D+ L R L
Sbjct: 85 PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------------KLGRSTNQL 127
Query: 224 SGGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
SGG+ +R+ +L QL++LDEP +D + + +L +G ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIV 187
Query: 277 MTTQYIEEANDASEVAFLYKG 297
++ + + A+L KG
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKG 208
>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3MXW|A Chain A, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 169
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 52 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 110
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 111 LHYEGRAVDITTSDRDRSKYGM 132
>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|B Chain B, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
Length = 168
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 60 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 118
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 119 LHYEGRAVDITTSDRDRSKYGM 140
>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
pdb|3M1N|B Chain B, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
Length = 175
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 58 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 116
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 117 LHYEGRAVDITTSDRDRSKYGM 138
>pdb|3N1R|A Chain A, Crystal Structure Of Shhn
Length = 160
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 46 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 104
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 105 LHYEGRAVDITTSDRDRSKYGM 126
>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
Signalling Domain Of Sonic Hedgehog
Length = 162
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 48 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 106
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 107 LHYEGRAVDITTSDRDRSKYGM 128
>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
Length = 152
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 42 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGH-HSEES 100
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 101 LHYEGRAVDITTSDRDRSKYGM 122
>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 155
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFV------GKGRTVIMTTQYIEEANDASEVA 292
+ P +I DE G D L+ +R D L G + +T + E+ + SE +
Sbjct: 42 YNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEES 100
Query: 293 FLYKGRIIAQDSPDGFKSKYSM 314
Y+GR + + D +SKY M
Sbjct: 101 LHYEGRAVDITTSDRDRSKYGM 122
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQK------RRLSFTI 235
+ E + F + Y E F++R ++ PN + LSGG++ RL+
Sbjct: 245 LNEAFSEFDLPYSFVELTKDFEVRVHA-----PNGVLTIDNLSGGEQIAVALSLRLAIAN 299
Query: 236 AIL-HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291
A++ ++ + IILDEP V +D R ++ ++ + + +I+T E D ++V
Sbjct: 300 ALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH--RELEDVADV 354
>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|F Chain F, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|G Chain G, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|H Chain H, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 150
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 207 YSHVLK--LPNLERPVKYLSG---GQKRRLSFTIAIL---HKPQLIILDEPCVGVDPLVR 258
Y VLK +PNL SG G RR S L + ++ DE G D L+
Sbjct: 2 YPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMS 61
Query: 259 KRMWDLLQVFVGK------GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312
KR + L V G +++T + E+ + E + Y+GR + + D +SKY
Sbjct: 62 KRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQE-SLHYEGRAVTIATSDRDQSKY 120
Query: 313 SM 314
M
Sbjct: 121 GM 122
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 27/208 (12%)
Query: 118 EFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAGSKVGYM----P 171
E L+G + AGK+TL K + G + +GEI + G + + K ++ P
Sbjct: 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYP 89
Query: 172 QE-----LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV--KYL- 223
E +A F L ++ L G G+ E W K L+L + + +YL
Sbjct: 90 VEVPGVTIANFLRLALQAKL---GREVGVAE-FW----TKVKKALELLDWDESYLSRYLN 141
Query: 224 ---SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMT 278
SGG+K+R ++ +P +LDE G+D K + + G G VI
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
Query: 279 TQYIEEANDASEVAFLYKGRIIAQDSPD 306
Q I +V + GR++A P+
Sbjct: 202 YQRILNYIQPDKVHVMMDGRVVATGGPE 229
>pdb|1L3G|A Chain A, Nmr Structure Of The Dna-Binding Domain Of Cell Cycle
Protein, Mbp1(2-124) From Saccharomyces Cerevisiae
Length = 136
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 268 FVGKGRTVIMTTQYIEEANDASEVAF-LYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
F RT I+ + ++E ++ + F Y+G + + K+S+ + T
Sbjct: 44 FAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQ 103
Query: 327 DDGTSSGPPA----ETSKAEEPEVKLE 349
DG++S PPA SK ++ LE
Sbjct: 104 TDGSASPPPAPKHHHASKVDKLAAALE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,260,918
Number of Sequences: 62578
Number of extensions: 453384
Number of successful extensions: 1584
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 165
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)