Query psy10858
Match_columns 457
No_of_seqs 530 out of 1964
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:14:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.5E-61 3.2E-66 458.5 25.4 230 88-319 1-234 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.2E-59 2.5E-64 454.1 22.6 231 89-321 1-236 (309)
3 COG4555 NatA ABC-type Na+ tran 100.0 2.3E-58 5E-63 432.3 17.8 236 89-327 1-239 (245)
4 COG1131 CcmA ABC-type multidru 100.0 5.8E-57 1.3E-61 451.7 27.0 221 88-311 3-227 (293)
5 COG1135 AbcC ABC-type metal io 100.0 5.2E-57 1.1E-61 446.1 24.4 233 89-322 1-242 (339)
6 COG1127 Ttg2A ABC-type transpo 100.0 6.3E-56 1.4E-60 425.6 24.9 233 87-322 6-246 (263)
7 PRK13537 nodulation ABC transp 100.0 1.5E-55 3.3E-60 443.6 28.4 222 87-311 5-228 (306)
8 COG3839 MalK ABC-type sugar tr 100.0 9E-56 2E-60 447.9 25.2 222 88-313 2-226 (338)
9 COG1120 FepC ABC-type cobalami 100.0 1.2E-55 2.6E-60 432.4 23.5 230 88-322 1-237 (258)
10 COG3842 PotA ABC-type spermidi 100.0 1E-55 2.3E-60 449.5 23.2 228 88-319 4-235 (352)
11 COG1116 TauB ABC-type nitrate/ 100.0 5.2E-55 1.1E-59 422.5 23.8 205 88-299 2-211 (248)
12 PRK13536 nodulation factor exp 100.0 3.5E-54 7.5E-59 439.9 29.1 222 87-311 39-262 (340)
13 COG4152 ABC-type uncharacteriz 100.0 4.9E-55 1.1E-59 419.8 18.5 221 88-314 1-223 (300)
14 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-53 4.7E-58 434.4 29.4 225 89-313 1-233 (343)
15 PRK11650 ugpC glycerol-3-phosp 100.0 4.4E-53 9.5E-58 434.2 29.3 221 89-313 3-227 (356)
16 COG1136 SalX ABC-type antimicr 100.0 2.9E-53 6.3E-58 408.4 26.2 211 89-299 1-220 (226)
17 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-53 6E-58 414.2 25.6 226 88-322 3-236 (254)
18 TIGR03265 PhnT2 putative 2-ami 100.0 7.3E-53 1.6E-57 432.1 29.3 222 88-313 3-227 (353)
19 TIGR03522 GldA_ABC_ATP gliding 100.0 8.3E-53 1.8E-57 422.3 28.1 219 89-311 2-222 (301)
20 TIGR01288 nodI ATP-binding ABC 100.0 8.8E-53 1.9E-57 422.3 28.2 221 88-311 3-225 (303)
21 PRK11432 fbpC ferric transport 100.0 1.1E-52 2.5E-57 430.4 29.5 222 88-313 5-229 (351)
22 COG1137 YhbG ABC-type (unclass 100.0 2E-54 4.4E-59 405.3 14.5 231 88-323 3-238 (243)
23 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-52 4E-57 403.8 27.5 219 90-310 1-226 (235)
24 TIGR03258 PhnT 2-aminoethylpho 100.0 2E-52 4.4E-57 430.1 29.3 220 89-312 5-230 (362)
25 TIGR01188 drrA daunorubicin re 100.0 1.4E-52 3.1E-57 420.6 26.1 213 97-312 1-215 (302)
26 PRK09452 potA putrescine/sperm 100.0 5.6E-52 1.2E-56 428.6 29.7 223 87-313 12-237 (375)
27 COG1118 CysA ABC-type sulfate/ 100.0 5.3E-53 1.1E-57 416.9 20.2 229 88-320 1-237 (345)
28 cd03265 ABC_DrrA DrrA is the A 100.0 5.4E-52 1.2E-56 396.7 26.6 216 90-308 1-219 (220)
29 PRK11153 metN DL-methionine tr 100.0 8E-52 1.7E-56 422.8 29.6 224 89-312 1-232 (343)
30 COG1122 CbiO ABC-type cobalt t 100.0 2.8E-52 6E-57 405.6 24.7 223 88-311 2-229 (235)
31 PRK10851 sulfate/thiosulfate t 100.0 7.6E-52 1.6E-56 424.6 29.1 221 89-313 2-229 (353)
32 TIGR00960 3a0501s02 Type II (G 100.0 4.8E-52 1.1E-56 395.6 25.2 211 89-299 1-216 (216)
33 COG1124 DppF ABC-type dipeptid 100.0 3.3E-52 7.2E-57 400.8 23.9 230 88-319 2-240 (252)
34 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-51 4.4E-56 397.1 29.4 231 89-322 1-233 (236)
35 cd03296 ABC_CysA_sulfate_impor 100.0 1.4E-51 3.1E-56 398.8 28.1 219 89-311 2-227 (239)
36 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-51 2.6E-56 396.5 27.2 227 90-321 1-230 (232)
37 COG3638 ABC-type phosphate/pho 100.0 2.7E-52 5.9E-57 399.6 22.0 230 88-323 2-246 (258)
38 PRK11000 maltose/maltodextrin 100.0 1.8E-51 3.8E-56 424.1 29.5 221 89-313 3-226 (369)
39 PRK11607 potG putrescine trans 100.0 2.6E-51 5.6E-56 424.0 29.9 223 87-313 17-242 (377)
40 cd03258 ABC_MetN_methionine_tr 100.0 1.8E-51 3.9E-56 396.0 26.7 220 89-310 1-230 (233)
41 TIGR01257 rim_protein retinal- 100.0 1E-51 2.3E-56 489.3 30.3 227 87-314 1935-2163(2272)
42 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-51 4.1E-56 396.2 26.6 219 90-310 1-232 (236)
43 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-51 3.4E-56 391.3 25.5 210 90-303 1-213 (213)
44 PRK09536 btuD corrinoid ABC tr 100.0 2E-51 4.4E-56 427.6 28.6 230 88-322 2-237 (402)
45 TIGR01186 proV glycine betaine 100.0 1.6E-51 3.6E-56 423.3 27.4 221 97-319 1-228 (363)
46 cd03266 ABC_NatA_sodium_export 100.0 2E-51 4.4E-56 391.5 25.6 212 89-303 1-218 (218)
47 PRK11629 lolD lipoprotein tran 100.0 6.9E-51 1.5E-55 392.7 28.3 217 88-304 4-228 (233)
48 COG2884 FtsE Predicted ATPase 100.0 6.6E-52 1.4E-56 385.7 20.2 215 89-304 1-220 (223)
49 PRK09493 glnQ glutamine ABC tr 100.0 8.5E-51 1.8E-55 393.3 28.1 222 89-312 1-227 (240)
50 PRK15079 oligopeptide ABC tran 100.0 9.9E-51 2.1E-55 413.1 29.9 233 86-318 5-259 (331)
51 PRK13650 cbiO cobalt transport 100.0 5.9E-51 1.3E-55 404.7 27.3 224 88-311 3-230 (279)
52 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.9E-51 8.5E-56 389.5 24.7 210 90-299 1-218 (218)
53 PRK13637 cbiO cobalt transport 100.0 1.1E-50 2.3E-55 404.5 28.7 222 89-310 2-234 (287)
54 cd03224 ABC_TM1139_LivF_branch 100.0 5.9E-51 1.3E-55 388.9 25.5 216 90-309 1-220 (222)
55 COG1117 PstB ABC-type phosphat 100.0 1E-51 2.3E-56 390.5 19.9 227 87-317 5-244 (253)
56 cd03301 ABC_MalK_N The N-termi 100.0 7.6E-51 1.6E-55 386.3 25.9 210 90-303 1-213 (213)
57 cd03263 ABC_subfamily_A The AB 100.0 7.8E-51 1.7E-55 388.0 26.0 217 90-308 1-219 (220)
58 PRK13635 cbiO cobalt transport 100.0 9.8E-51 2.1E-55 403.3 27.7 224 87-310 3-229 (279)
59 PRK13647 cbiO cobalt transport 100.0 1E-50 2.2E-55 402.0 27.7 220 88-308 3-225 (274)
60 PRK11264 putative amino-acid A 100.0 1.8E-50 3.9E-55 392.9 28.7 221 89-311 3-234 (250)
61 cd03260 ABC_PstB_phosphate_tra 100.0 6.2E-51 1.4E-55 390.8 25.1 215 90-308 1-227 (227)
62 COG0411 LivG ABC-type branched 100.0 1.3E-51 2.8E-56 396.9 20.4 230 88-322 3-248 (250)
63 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-50 3.3E-55 392.3 28.0 221 90-311 1-226 (242)
64 PRK10070 glycine betaine trans 100.0 1.5E-50 3.2E-55 420.9 29.4 234 88-321 3-265 (400)
65 cd03256 ABC_PhnC_transporter A 100.0 1.3E-50 2.8E-55 391.1 26.2 219 90-309 1-233 (241)
66 PRK11831 putative ABC transpor 100.0 2.5E-50 5.3E-55 397.8 28.6 223 87-311 5-234 (269)
67 TIGR00972 3a0107s01c2 phosphat 100.0 3.1E-50 6.8E-55 391.3 28.7 219 89-311 1-233 (247)
68 PRK10895 lipopolysaccharide AB 100.0 1.7E-50 3.7E-55 391.4 26.7 228 89-321 3-234 (241)
69 TIGR02673 FtsE cell division A 100.0 1.3E-50 2.8E-55 385.0 25.1 208 89-298 1-214 (214)
70 TIGR03411 urea_trans_UrtD urea 100.0 3.2E-50 6.9E-55 389.4 28.2 228 88-321 1-239 (242)
71 cd03269 ABC_putative_ATPase Th 100.0 1.7E-50 3.7E-55 383.4 25.7 208 90-303 1-210 (210)
72 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.1E-50 4.6E-55 385.7 26.5 211 90-305 1-218 (220)
73 PRK10908 cell division protein 100.0 2.1E-50 4.5E-55 386.3 26.4 211 89-301 1-217 (222)
74 PRK13644 cbiO cobalt transport 100.0 2.2E-50 4.8E-55 399.6 27.2 221 89-310 1-224 (274)
75 PRK13643 cbiO cobalt transport 100.0 3E-50 6.4E-55 401.5 28.1 221 89-310 1-233 (288)
76 PRK14268 phosphate ABC transpo 100.0 5.6E-50 1.2E-54 392.5 29.1 229 87-319 10-251 (258)
77 PRK13634 cbiO cobalt transport 100.0 3E-50 6.5E-55 401.9 27.6 221 89-310 2-235 (290)
78 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-50 3.1E-55 391.7 24.5 219 89-309 1-234 (243)
79 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-50 6.6E-55 384.1 26.2 212 89-300 1-220 (221)
80 COG4175 ProV ABC-type proline/ 100.0 6E-51 1.3E-55 403.3 21.8 236 88-323 3-267 (386)
81 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-50 4.4E-55 382.4 24.6 206 90-303 1-208 (208)
82 cd03264 ABC_drug_resistance_li 100.0 2.5E-50 5.5E-55 382.5 25.2 209 90-303 1-211 (211)
83 PRK13651 cobalt transporter AT 100.0 3.4E-50 7.5E-55 404.8 27.4 223 89-311 2-255 (305)
84 PRK13641 cbiO cobalt transport 100.0 4.5E-50 9.8E-55 399.8 28.0 221 89-310 2-234 (287)
85 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-50 5.7E-55 397.8 25.9 220 91-312 26-252 (269)
86 PRK10619 histidine/lysine/argi 100.0 1E-49 2.2E-54 390.1 29.4 223 87-311 3-242 (257)
87 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-50 5.8E-55 381.9 24.0 208 91-298 1-211 (211)
88 PRK11308 dppF dipeptide transp 100.0 1.1E-49 2.4E-54 404.7 30.0 233 87-319 3-253 (327)
89 PRK13652 cbiO cobalt transport 100.0 7.7E-50 1.7E-54 396.1 28.0 222 88-310 2-227 (277)
90 PRK13548 hmuV hemin importer A 100.0 6.8E-50 1.5E-54 392.4 27.3 220 89-310 2-230 (258)
91 PRK13648 cbiO cobalt transport 100.0 7.5E-50 1.6E-54 394.1 27.7 225 86-310 4-231 (269)
92 PRK10584 putative ABC transpor 100.0 8.1E-50 1.8E-54 383.3 27.2 215 88-302 5-227 (228)
93 PRK11300 livG leucine/isoleuci 100.0 8E-50 1.7E-54 389.4 27.4 229 88-321 4-251 (255)
94 PRK11614 livF leucine/isoleuci 100.0 5.6E-50 1.2E-54 386.9 25.9 227 88-321 4-234 (237)
95 PRK13636 cbiO cobalt transport 100.0 8.1E-50 1.8E-54 397.3 27.7 223 87-310 3-231 (283)
96 PRK13638 cbiO cobalt transport 100.0 6.1E-50 1.3E-54 395.1 26.6 221 89-311 1-226 (271)
97 PRK13632 cbiO cobalt transport 100.0 6.5E-50 1.4E-54 395.2 26.6 224 87-310 5-231 (271)
98 cd03292 ABC_FtsE_transporter F 100.0 6E-50 1.3E-54 380.0 25.2 209 90-299 1-214 (214)
99 PRK11231 fecE iron-dicitrate t 100.0 6.9E-50 1.5E-54 390.9 26.3 228 89-321 2-235 (255)
100 PRK14242 phosphate transporter 100.0 1.8E-49 3.8E-54 387.0 29.0 229 86-318 3-245 (253)
101 PRK11124 artP arginine transpo 100.0 1.1E-49 2.3E-54 386.1 27.3 219 89-309 2-229 (242)
102 PRK14247 phosphate ABC transpo 100.0 1.5E-49 3.3E-54 386.7 28.4 220 89-311 3-235 (250)
103 PRK13646 cbiO cobalt transport 100.0 9.1E-50 2E-54 397.5 27.3 222 89-311 2-236 (286)
104 PRK13640 cbiO cobalt transport 100.0 9.1E-50 2E-54 396.7 27.2 224 87-310 3-232 (282)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 6.2E-50 1.3E-54 379.6 24.6 208 90-299 1-213 (213)
106 PRK11022 dppD dipeptide transp 100.0 1.8E-49 4E-54 402.9 29.4 233 89-321 3-254 (326)
107 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-49 3.3E-54 411.0 29.1 216 95-312 30-256 (382)
108 PRK13631 cbiO cobalt transport 100.0 1.4E-49 3E-54 402.8 28.1 224 87-311 19-266 (320)
109 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-49 2.6E-54 380.9 25.7 215 89-303 1-228 (228)
110 PRK14267 phosphate ABC transpo 100.0 2.4E-49 5.3E-54 386.0 28.3 221 88-311 3-238 (253)
111 TIGR03005 ectoine_ehuA ectoine 100.0 3.6E-49 7.9E-54 384.9 28.3 222 90-313 1-239 (252)
112 PRK15112 antimicrobial peptide 100.0 3E-49 6.6E-54 389.6 27.9 226 87-312 2-241 (267)
113 PRK11248 tauB taurine transpor 100.0 2.9E-49 6.4E-54 387.8 27.5 211 89-306 1-216 (255)
114 PRK13649 cbiO cobalt transport 100.0 3.3E-49 7.1E-54 391.4 27.9 221 89-310 2-234 (280)
115 PRK14273 phosphate ABC transpo 100.0 3.7E-49 8.1E-54 385.2 27.8 223 87-313 5-241 (254)
116 PRK10575 iron-hydroxamate tran 100.0 2.1E-49 4.5E-54 390.1 26.0 222 87-310 9-237 (265)
117 PRK09473 oppD oligopeptide tra 100.0 5.4E-49 1.2E-53 400.1 29.8 235 87-321 10-262 (330)
118 PRK13633 cobalt transporter AT 100.0 2.8E-49 6.1E-54 392.6 26.9 224 88-311 3-234 (280)
119 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-49 5E-54 380.6 25.2 214 90-308 1-219 (230)
120 PRK14269 phosphate ABC transpo 100.0 5.9E-49 1.3E-53 382.4 28.0 220 88-311 1-231 (246)
121 PRK13642 cbiO cobalt transport 100.0 4.9E-49 1.1E-53 390.3 27.6 224 88-311 3-230 (277)
122 PRK10253 iron-enterobactin tra 100.0 4E-49 8.6E-54 388.2 26.6 223 86-310 4-233 (265)
123 PRK14235 phosphate transporter 100.0 9.2E-49 2E-53 386.2 29.1 223 85-311 15-252 (267)
124 PRK13639 cbiO cobalt transport 100.0 5.8E-49 1.3E-53 389.4 27.7 221 89-310 1-226 (275)
125 PRK14250 phosphate ABC transpo 100.0 4.8E-49 1E-53 382.2 26.6 217 88-311 2-222 (241)
126 PRK10744 pstB phosphate transp 100.0 8.2E-49 1.8E-53 384.6 28.4 229 88-320 12-254 (260)
127 TIGR03873 F420-0_ABC_ATP propo 100.0 4.4E-49 9.5E-54 385.4 26.3 219 90-310 2-226 (256)
128 TIGR02769 nickel_nikE nickel i 100.0 5.5E-49 1.2E-53 387.2 27.1 222 89-310 2-240 (265)
129 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-49 4.9E-54 374.8 23.4 202 91-300 1-205 (205)
130 TIGR01978 sufC FeS assembly AT 100.0 6.4E-49 1.4E-53 379.7 26.9 218 90-309 1-233 (243)
131 PRK15093 antimicrobial peptide 100.0 1E-48 2.2E-53 397.8 29.5 228 88-315 2-253 (330)
132 PRK14248 phosphate ABC transpo 100.0 1.3E-48 2.8E-53 384.9 28.7 231 85-319 17-261 (268)
133 PRK14274 phosphate ABC transpo 100.0 1.2E-48 2.7E-53 382.9 28.4 223 87-313 10-246 (259)
134 PRK10771 thiQ thiamine transpo 100.0 1E-48 2.3E-53 377.2 26.5 225 89-322 1-228 (232)
135 PRK14270 phosphate ABC transpo 100.0 1.7E-48 3.7E-53 379.9 28.3 228 88-319 3-244 (251)
136 cd03235 ABC_Metallic_Cations A 100.0 2.9E-49 6.3E-54 375.8 22.1 205 91-303 1-213 (213)
137 PRK14241 phosphate transporter 100.0 2E-48 4.3E-53 381.3 28.6 221 88-311 3-243 (258)
138 PRK14239 phosphate transporter 100.0 2.1E-48 4.6E-53 378.8 28.6 228 88-319 4-245 (252)
139 PRK09984 phosphonate/organopho 100.0 1.5E-48 3.2E-53 382.9 27.6 233 88-326 3-254 (262)
140 COG0410 LivF ABC-type branched 100.0 5.8E-49 1.3E-53 376.0 24.0 229 88-322 2-235 (237)
141 TIGR03740 galliderm_ABC gallid 100.0 1.7E-48 3.7E-53 373.3 27.3 219 90-324 1-221 (223)
142 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.9E-49 1.9E-53 371.9 25.0 208 90-303 1-211 (211)
143 PRK14256 phosphate ABC transpo 100.0 2.4E-48 5.2E-53 379.1 28.7 229 88-319 3-245 (252)
144 PRK14259 phosphate ABC transpo 100.0 2.1E-48 4.5E-53 384.4 28.3 225 83-312 7-255 (269)
145 PRK14240 phosphate transporter 100.0 2.5E-48 5.4E-53 378.2 28.2 227 89-319 3-243 (250)
146 PRK14245 phosphate ABC transpo 100.0 3.1E-48 6.8E-53 377.9 29.0 221 88-312 2-236 (250)
147 PRK11701 phnK phosphonate C-P 100.0 3.5E-48 7.6E-53 379.5 29.0 222 88-311 5-242 (258)
148 cd03300 ABC_PotA_N PotA is an 100.0 2.7E-48 5.9E-53 374.7 27.7 218 90-311 1-221 (232)
149 cd03299 ABC_ModC_like Archeal 100.0 3.3E-48 7.1E-53 375.1 28.2 217 90-311 1-220 (235)
150 KOG0059|consensus 100.0 1.6E-49 3.4E-54 448.7 21.9 228 88-316 563-793 (885)
151 PRK11144 modC molybdate transp 100.0 1.3E-48 2.9E-53 400.3 26.8 214 89-313 1-221 (352)
152 PRK13645 cbiO cobalt transport 100.0 2E-48 4.4E-53 387.9 27.2 222 88-310 5-240 (289)
153 PRK11247 ssuB aliphatic sulfon 100.0 2.4E-48 5.1E-53 382.5 26.0 207 87-306 10-219 (257)
154 TIGR02142 modC_ABC molybdenum 100.0 3.4E-48 7.3E-53 397.5 27.3 213 94-312 4-223 (354)
155 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-48 2.6E-53 377.2 22.5 218 90-311 1-226 (237)
156 TIGR00968 3a0106s01 sulfate AB 100.0 6.8E-48 1.5E-52 373.3 27.8 218 90-311 1-221 (237)
157 PRK14251 phosphate ABC transpo 100.0 8.2E-48 1.8E-52 374.8 28.4 220 88-311 3-236 (251)
158 PRK10762 D-ribose transporter 100.0 2.3E-48 5E-53 414.6 26.7 220 88-309 3-229 (501)
159 PRK14272 phosphate ABC transpo 100.0 9.4E-48 2E-52 374.3 28.3 221 88-311 3-237 (252)
160 PRK14249 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 373.9 28.7 227 88-318 3-243 (251)
161 cd03297 ABC_ModC_molybdenum_tr 100.0 4.3E-48 9.3E-53 368.3 24.9 206 90-303 2-214 (214)
162 TIGR01257 rim_protein retinal- 100.0 3.6E-48 7.9E-53 459.2 29.8 226 87-314 926-1153(2272)
163 TIGR03608 L_ocin_972_ABC putat 100.0 3.1E-48 6.8E-53 366.1 23.4 201 92-294 1-206 (206)
164 PRK14262 phosphate ABC transpo 100.0 1.3E-47 2.9E-52 373.1 28.5 220 88-311 2-235 (250)
165 PRK13549 xylose transporter AT 100.0 3.9E-48 8.5E-53 413.2 26.7 220 88-309 4-231 (506)
166 PRK14237 phosphate transporter 100.0 1.7E-47 3.7E-52 377.2 29.1 222 86-311 17-252 (267)
167 PRK14253 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 373.2 27.6 219 89-311 3-234 (249)
168 PRK09700 D-allose transporter 100.0 4.8E-48 1E-52 412.8 26.9 221 88-310 4-234 (510)
169 PRK14236 phosphate transporter 100.0 1.9E-47 4E-52 377.9 29.1 221 87-311 23-257 (272)
170 PRK14261 phosphate ABC transpo 100.0 2E-47 4.4E-52 372.8 28.6 231 87-322 4-248 (253)
171 PRK14254 phosphate ABC transpo 100.0 2.2E-47 4.7E-52 380.6 29.1 229 86-319 36-278 (285)
172 cd03251 ABCC_MsbA MsbA is an e 100.0 5.5E-48 1.2E-52 371.6 24.0 218 90-311 1-226 (234)
173 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-47 2.4E-52 365.6 25.7 209 90-304 1-212 (213)
174 PRK13547 hmuV hemin importer A 100.0 9.4E-48 2E-52 381.1 26.2 220 89-310 1-244 (272)
175 PRK14275 phosphate ABC transpo 100.0 2.4E-47 5.3E-52 380.2 29.0 223 86-312 36-272 (286)
176 cd03267 ABC_NatA_like Similar 100.0 7.9E-48 1.7E-52 372.9 24.8 204 97-303 29-236 (236)
177 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-47 5.4E-52 371.8 28.3 222 88-311 2-239 (253)
178 PRK14271 phosphate ABC transpo 100.0 3.2E-47 7E-52 377.5 29.3 223 87-313 19-254 (276)
179 PRK10261 glutathione transport 100.0 1.8E-47 3.8E-52 418.1 29.7 232 87-318 311-561 (623)
180 PRK10247 putative ABC transpor 100.0 8.1E-48 1.8E-52 370.0 23.8 213 87-304 5-221 (225)
181 PRK14238 phosphate transporter 100.0 2.8E-47 6E-52 376.7 28.2 222 87-312 22-257 (271)
182 PRK14255 phosphate ABC transpo 100.0 4.1E-47 8.8E-52 370.1 28.8 221 88-312 4-238 (252)
183 COG0444 DppD ABC-type dipeptid 100.0 2E-47 4.3E-52 381.0 27.0 237 89-325 1-258 (316)
184 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-47 3.1E-52 409.6 27.4 217 88-310 10-229 (510)
185 PRK14260 phosphate ABC transpo 100.0 3.9E-47 8.3E-52 372.6 28.1 220 88-311 6-244 (259)
186 PRK10418 nikD nickel transport 100.0 3.8E-47 8.3E-52 371.6 27.9 217 88-311 3-231 (254)
187 PRK14258 phosphate ABC transpo 100.0 5.2E-47 1.1E-51 372.4 28.9 222 88-312 6-247 (261)
188 PRK14244 phosphate ABC transpo 100.0 3.7E-47 8.1E-52 370.5 27.2 219 89-311 5-238 (251)
189 PRK14243 phosphate transporter 100.0 4.4E-47 9.5E-52 373.7 27.2 221 88-313 9-251 (264)
190 PRK14246 phosphate ABC transpo 100.0 6.6E-47 1.4E-51 371.5 27.9 223 86-311 7-242 (257)
191 TIGR02982 heterocyst_DevA ABC 100.0 3.9E-47 8.5E-52 363.5 25.5 212 89-300 1-220 (220)
192 cd03234 ABCG_White The White s 100.0 4.2E-47 9.1E-52 364.7 25.2 212 89-303 3-226 (226)
193 PRK10419 nikE nickel transport 100.0 6.8E-47 1.5E-51 373.4 27.1 223 88-310 2-241 (268)
194 COG4598 HisP ABC-type histidin 100.0 2E-48 4.3E-53 360.0 15.1 232 87-320 4-251 (256)
195 TIGR02770 nickel_nikD nickel i 100.0 4.4E-47 9.5E-52 365.8 24.8 204 106-311 1-216 (230)
196 CHL00131 ycf16 sulfate ABC tra 100.0 1E-46 2.2E-51 367.0 27.6 218 88-307 6-238 (252)
197 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.3E-47 4.9E-52 368.6 22.7 218 90-311 1-227 (238)
198 cd03254 ABCC_Glucan_exporter_l 100.0 2.5E-47 5.4E-52 366.0 22.5 217 90-311 3-227 (229)
199 PRK13538 cytochrome c biogenes 100.0 4.2E-47 9.1E-52 359.7 23.8 200 89-294 1-202 (204)
200 PRK10261 glutathione transport 100.0 4.3E-47 9.4E-52 415.0 27.1 225 87-311 10-259 (623)
201 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-47 5.1E-52 364.0 21.8 206 90-303 3-220 (220)
202 PRK15134 microcin C ABC transp 100.0 5.1E-47 1.1E-51 406.7 26.7 225 87-312 273-517 (529)
203 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-47 4E-52 354.1 19.9 217 89-312 1-221 (231)
204 PRK14266 phosphate ABC transpo 100.0 1.8E-46 3.9E-51 365.2 27.7 221 89-313 3-237 (250)
205 PRK14265 phosphate ABC transpo 100.0 1.8E-46 3.8E-51 371.7 27.8 221 87-312 18-260 (274)
206 PRK14263 phosphate ABC transpo 100.0 2.6E-46 5.6E-51 368.1 28.6 221 86-311 5-246 (261)
207 PRK14257 phosphate ABC transpo 100.0 2.4E-46 5.3E-51 380.6 29.2 226 87-314 78-317 (329)
208 TIGR02633 xylG D-xylose ABC tr 100.0 8.6E-47 1.9E-51 402.0 27.1 218 89-308 1-228 (500)
209 PRK15134 microcin C ABC transp 100.0 1.4E-46 3E-51 403.4 28.3 224 88-311 4-247 (529)
210 PRK14252 phosphate ABC transpo 100.0 3.4E-46 7.3E-51 367.1 28.6 229 87-319 14-258 (265)
211 PRK11288 araG L-arabinose tran 100.0 1.3E-46 2.9E-51 401.0 27.6 216 88-305 3-224 (501)
212 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-46 3.2E-51 402.2 27.7 223 87-310 277-517 (520)
213 PRK03695 vitamin B12-transport 100.0 1.2E-46 2.7E-51 367.3 24.5 212 91-310 2-222 (248)
214 PRK15056 manganese/iron transp 100.0 1.7E-46 3.7E-51 371.0 25.5 228 88-323 5-240 (272)
215 COG1123 ATPase components of v 100.0 1.6E-46 3.4E-51 397.6 26.8 236 86-321 277-530 (539)
216 PRK10982 galactose/methyl gala 100.0 1.1E-46 2.5E-51 400.4 25.6 216 92-309 1-222 (491)
217 cd03253 ABCC_ATM1_transporter 100.0 1.7E-46 3.8E-51 361.6 24.4 217 90-311 1-225 (236)
218 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-46 3.3E-51 402.1 26.3 220 90-311 1-259 (520)
219 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-46 2.3E-51 359.7 22.1 206 90-304 3-220 (221)
220 PRK09580 sufC cysteine desulfu 100.0 5.1E-46 1.1E-50 360.9 27.1 218 89-308 1-233 (248)
221 TIGR01184 ntrCD nitrate transp 100.0 1.3E-46 2.9E-51 363.0 22.9 197 107-308 1-202 (230)
222 PRK13543 cytochrome c biogenes 100.0 2.9E-46 6.2E-51 356.7 24.7 202 87-296 9-212 (214)
223 TIGR02324 CP_lyasePhnL phospho 100.0 2.9E-46 6.3E-51 357.8 24.8 206 89-294 1-222 (224)
224 PRK14264 phosphate ABC transpo 100.0 8.1E-46 1.8E-50 372.6 28.9 231 87-321 43-300 (305)
225 cd03369 ABCC_NFT1 Domain 2 of 100.0 3E-46 6.6E-51 353.9 24.0 203 88-305 5-207 (207)
226 COG4559 ABC-type hemin transpo 100.0 8.6E-47 1.9E-51 356.7 19.9 229 89-322 1-239 (259)
227 PRK13549 xylose transporter AT 100.0 1.9E-46 4.1E-51 400.3 24.4 222 87-308 257-492 (506)
228 cd03248 ABCC_TAP TAP, the Tran 100.0 1.5E-46 3.2E-51 360.3 20.2 210 86-299 8-226 (226)
229 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.3E-46 7.2E-51 359.1 22.7 200 90-303 23-224 (224)
230 PRK13539 cytochrome c biogenes 100.0 5.9E-46 1.3E-50 352.9 23.5 198 89-296 2-200 (207)
231 PRK10938 putative molybdenum t 100.0 2.7E-46 5.9E-51 397.2 23.6 212 89-310 3-224 (490)
232 cd03246 ABCC_Protease_Secretio 100.0 4.5E-46 9.8E-51 344.3 21.5 173 90-299 1-173 (173)
233 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.9E-46 1.1E-50 369.7 22.5 212 90-311 3-226 (275)
234 PRK09544 znuC high-affinity zi 100.0 1.2E-45 2.7E-50 361.8 25.0 202 88-310 3-209 (251)
235 cd03231 ABC_CcmA_heme_exporter 100.0 9.4E-46 2E-50 350.0 22.9 196 90-294 1-198 (201)
236 TIGR02633 xylG D-xylose ABC tr 100.0 5.7E-46 1.2E-50 395.7 24.0 221 87-307 255-489 (500)
237 cd03229 ABC_Class3 This class 100.0 7.8E-46 1.7E-50 344.2 21.8 174 90-298 1-178 (178)
238 cd03230 ABC_DR_subfamily_A Thi 100.0 1.1E-45 2.5E-50 341.6 22.6 172 90-299 1-173 (173)
239 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-45 3.6E-50 349.0 24.2 192 89-303 3-202 (202)
240 COG1123 ATPase components of v 100.0 2.3E-45 5.1E-50 388.7 27.6 236 88-323 4-257 (539)
241 cd03247 ABCC_cytochrome_bd The 100.0 6.6E-46 1.4E-50 344.4 20.5 178 90-303 1-178 (178)
242 PRK13540 cytochrome c biogenes 100.0 1.4E-45 3.1E-50 348.2 23.1 197 89-293 1-198 (200)
243 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-45 2.4E-50 344.4 21.9 175 88-299 3-182 (182)
244 PRK09700 D-allose transporter 100.0 9.5E-46 2.1E-50 395.1 24.5 216 87-306 263-494 (510)
245 cd03288 ABCC_SUR2 The SUR doma 100.0 1.4E-45 2.9E-50 361.6 22.9 220 87-311 17-244 (257)
246 COG1129 MglA ABC-type sugar tr 100.0 1.4E-45 3.1E-50 387.9 24.4 217 87-305 6-229 (500)
247 TIGR01166 cbiO cobalt transpor 100.0 9.6E-46 2.1E-50 346.1 20.6 181 104-285 5-190 (190)
248 COG4181 Predicted ABC-type tra 100.0 1.2E-45 2.6E-50 339.2 18.9 214 88-301 5-226 (228)
249 PRK11174 cysteine/glutathione 100.0 1.5E-44 3.3E-49 391.3 31.0 217 89-311 349-573 (588)
250 COG4525 TauB ABC-type taurine 100.0 1.6E-45 3.4E-50 344.5 19.9 214 88-306 2-220 (259)
251 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.7E-45 1E-49 345.2 23.4 184 90-305 1-189 (200)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-45 1E-49 343.9 23.3 184 89-303 3-194 (194)
253 TIGR01189 ccmA heme ABC export 100.0 4.4E-45 9.5E-50 344.1 22.9 195 90-292 1-196 (198)
254 PRK13546 teichoic acids export 100.0 1.8E-44 3.8E-49 356.4 27.6 211 89-312 4-234 (264)
255 cd03232 ABC_PDR_domain2 The pl 100.0 8.8E-45 1.9E-49 341.3 23.3 184 88-303 2-192 (192)
256 COG2274 SunT ABC-type bacterio 100.0 3.6E-45 7.9E-50 402.4 24.1 221 87-311 469-697 (709)
257 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-44 2.6E-49 399.2 27.9 213 88-311 450-674 (686)
258 COG4604 CeuD ABC-type enteroch 100.0 2.4E-46 5.3E-51 350.3 12.2 229 89-322 1-234 (252)
259 COG3845 ABC-type uncharacteriz 100.0 5.3E-45 1.2E-49 378.2 22.9 216 87-304 2-223 (501)
260 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-44 3.9E-49 388.1 27.4 220 88-310 315-542 (544)
261 PRK10762 D-ribose transporter 100.0 1E-44 2.2E-49 386.6 24.2 214 88-308 256-482 (501)
262 cd03228 ABCC_MRP_Like The MRP 100.0 7.5E-45 1.6E-49 335.6 20.1 171 90-298 1-171 (171)
263 TIGR03375 type_I_sec_LssB type 100.0 3.8E-44 8.2E-49 395.7 28.8 220 88-311 462-689 (694)
264 cd03214 ABC_Iron-Siderophores_ 100.0 6.4E-45 1.4E-49 338.7 19.0 177 91-303 1-180 (180)
265 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-44 3.4E-49 399.5 25.2 218 88-311 476-701 (710)
266 PRK11176 lipid transporter ATP 100.0 2.1E-44 4.6E-49 389.6 24.8 216 89-311 341-568 (582)
267 PRK11288 araG L-arabinose tran 100.0 1.7E-44 3.6E-49 384.9 23.4 215 88-308 256-483 (501)
268 PRK11160 cysteine/glutathione 100.0 2.3E-44 5E-49 390.0 24.2 216 88-311 337-563 (574)
269 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-43 5.3E-48 382.3 31.3 228 88-322 333-568 (588)
270 PRK10790 putative multidrug tr 100.0 7.7E-44 1.7E-48 386.4 27.3 223 88-322 339-573 (592)
271 PRK15439 autoinducer 2 ABC tra 100.0 3.6E-44 7.7E-49 383.4 24.2 217 87-310 266-492 (510)
272 cd03250 ABCC_MRP_domain1 Domai 100.0 4E-44 8.6E-49 338.7 21.8 192 90-298 1-204 (204)
273 PRK13541 cytochrome c biogenes 100.0 4.8E-44 1E-48 336.5 22.1 191 89-291 1-192 (195)
274 TIGR01193 bacteriocin_ABC ABC- 100.0 9.4E-44 2E-48 393.4 28.1 219 88-311 472-698 (708)
275 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-44 1.2E-48 395.9 25.8 214 88-311 477-703 (711)
276 PLN03211 ABC transporter G-25; 100.0 4.3E-44 9.4E-49 393.3 24.6 214 92-311 71-297 (659)
277 PRK13545 tagH teichoic acids e 100.0 1.4E-43 3E-48 376.4 27.3 213 87-312 19-234 (549)
278 TIGR01187 potA spermidine/putr 100.0 6.1E-44 1.3E-48 362.2 23.4 190 122-313 1-193 (325)
279 PRK10982 galactose/methyl gala 100.0 5E-44 1.1E-48 380.2 23.8 216 87-306 248-476 (491)
280 COG1132 MdlB ABC-type multidru 100.0 7.6E-44 1.6E-48 384.8 25.4 218 89-311 328-553 (567)
281 cd03290 ABCC_SUR1_N The SUR do 100.0 8.6E-44 1.9E-48 339.7 22.9 199 91-298 2-218 (218)
282 TIGR03771 anch_rpt_ABC anchore 100.0 8.7E-44 1.9E-48 341.9 23.0 201 112-321 1-209 (223)
283 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-43 2.3E-48 326.2 22.5 160 90-301 1-162 (163)
284 PRK15064 ABC transporter ATP-b 100.0 1.4E-43 3.1E-48 380.2 25.8 206 89-310 1-242 (530)
285 COG4988 CydD ABC-type transpor 100.0 1.2E-43 2.7E-48 374.8 24.3 217 90-311 321-544 (559)
286 COG4161 ArtP ABC-type arginine 100.0 4E-44 8.6E-49 326.8 17.7 218 89-308 2-228 (242)
287 PRK11819 putative ABC transpor 100.0 1.6E-43 3.4E-48 382.2 25.2 206 88-309 5-249 (556)
288 TIGR01192 chvA glucan exporter 100.0 1.2E-42 2.5E-47 377.6 31.6 219 88-311 333-559 (585)
289 TIGR01846 type_I_sec_HlyB type 100.0 4.7E-43 1E-47 387.1 29.0 220 88-311 454-681 (694)
290 PRK10535 macrolide transporter 100.0 4.9E-43 1.1E-47 384.7 28.6 222 88-309 3-231 (648)
291 COG4586 ABC-type uncharacteriz 100.0 2.5E-44 5.4E-49 350.5 15.5 224 89-313 3-249 (325)
292 PRK10789 putative multidrug tr 100.0 4.6E-43 1E-47 379.3 26.4 220 88-311 312-539 (569)
293 KOG0058|consensus 100.0 2.4E-43 5.1E-48 379.2 22.6 221 88-312 464-693 (716)
294 PRK10938 putative molybdenum t 100.0 2.8E-43 6E-48 374.2 22.3 215 87-303 258-485 (490)
295 TIGR02203 MsbA_lipidA lipid A 100.0 8.5E-43 1.9E-47 375.7 26.2 217 88-311 329-557 (571)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.5E-43 1.6E-47 376.5 25.4 207 88-310 3-248 (552)
297 PRK15064 ABC transporter ATP-b 100.0 5E-43 1.1E-47 375.9 24.0 203 88-311 318-526 (530)
298 TIGR02204 MsbA_rel ABC transpo 100.0 8.9E-43 1.9E-47 376.2 25.2 216 88-311 336-564 (576)
299 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.8E-42 6.1E-47 344.0 25.9 205 85-311 35-248 (282)
300 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-42 2.7E-47 320.0 21.5 164 90-298 1-164 (166)
301 COG4608 AppF ABC-type oligopep 100.0 1.2E-42 2.7E-47 340.2 21.4 198 88-322 3-211 (268)
302 PRK11819 putative ABC transpor 100.0 4.3E-42 9.4E-47 371.0 25.2 206 87-310 322-533 (556)
303 COG4987 CydC ABC-type transpor 100.0 4.7E-43 1E-47 366.4 17.0 215 89-311 336-562 (573)
304 KOG0057|consensus 100.0 3.3E-42 7.3E-47 360.3 22.2 213 88-310 350-574 (591)
305 KOG0055|consensus 100.0 1.8E-42 3.9E-47 389.7 21.6 222 87-312 348-578 (1228)
306 COG4172 ABC-type uncharacteriz 100.0 1.2E-41 2.6E-46 345.5 25.3 234 85-319 272-525 (534)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.3E-42 1.6E-46 368.9 25.1 205 87-309 320-530 (552)
308 COG4674 Uncharacterized ABC-ty 100.0 8.4E-43 1.8E-47 326.1 14.5 229 88-322 4-244 (249)
309 PRK15177 Vi polysaccharide exp 100.0 8.7E-42 1.9E-46 326.5 21.2 189 105-310 1-192 (213)
310 COG4148 ModC ABC-type molybdat 100.0 9E-43 1.9E-47 340.5 14.5 209 94-312 5-220 (352)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.7E-42 2.1E-46 333.6 21.8 188 106-309 9-206 (246)
312 PLN03232 ABC transporter C fam 100.0 2.4E-41 5.3E-46 399.4 28.8 214 89-311 1234-1459(1495)
313 TIGR00955 3a01204 The Eye Pigm 100.0 9.3E-42 2E-46 372.7 23.0 204 104-310 38-256 (617)
314 COG1119 ModF ABC-type molybden 100.0 5.9E-42 1.3E-46 330.3 17.2 217 86-304 28-256 (257)
315 COG4619 ABC-type uncharacteriz 100.0 9.9E-43 2.1E-47 319.1 11.2 205 90-299 4-212 (223)
316 PRK13409 putative ATPase RIL; 100.0 2.4E-41 5.3E-46 367.5 23.9 196 87-304 338-536 (590)
317 TIGR02857 CydD thiol reductant 100.0 1.7E-41 3.7E-46 363.2 21.5 198 89-294 320-529 (529)
318 PLN03130 ABC transporter C fam 100.0 3.9E-41 8.4E-46 399.1 25.9 215 88-311 1236-1462(1622)
319 PRK10522 multidrug transporter 100.0 4E-41 8.7E-46 362.5 23.6 204 88-303 321-531 (547)
320 TIGR00956 3a01205 Pleiotropic 100.0 6E-41 1.3E-45 393.4 26.6 214 89-306 759-989 (1394)
321 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.1E-41 9E-46 363.2 23.2 205 88-302 336-551 (555)
322 PTZ00265 multidrug resistance 100.0 3.6E-41 7.8E-46 396.2 24.3 219 89-310 1165-1452(1466)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.1E-41 6.8E-46 331.8 18.9 201 93-302 4-219 (255)
324 PRK10636 putative ABC transpor 100.0 8E-41 1.7E-45 366.6 24.2 201 87-309 310-516 (638)
325 COG4172 ABC-type uncharacteriz 100.0 2E-40 4.3E-45 336.8 24.7 235 87-321 4-258 (534)
326 PTZ00265 multidrug resistance 100.0 4.8E-41 1E-45 395.1 23.2 208 89-297 382-655 (1466)
327 TIGR00957 MRP_assoc_pro multi 100.0 9.3E-41 2E-45 395.0 25.7 215 88-311 1283-1509(1522)
328 PTZ00243 ABC transporter; Prov 100.0 1.1E-40 2.4E-45 394.3 24.6 214 89-311 1308-1534(1560)
329 PRK11147 ABC transporter ATPas 100.0 2.2E-40 4.8E-45 363.0 24.5 204 87-308 317-526 (635)
330 TIGR02868 CydC thiol reductant 100.0 8.5E-41 1.8E-45 357.8 20.4 185 88-282 333-529 (529)
331 KOG0055|consensus 100.0 2.1E-40 4.5E-45 373.1 22.8 220 89-312 987-1215(1228)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.8E-40 1E-44 296.6 19.9 143 90-298 1-144 (144)
333 PRK10636 putative ABC transpor 100.0 8.3E-40 1.8E-44 358.7 25.4 204 89-309 1-235 (638)
334 COG1101 PhnK ABC-type uncharac 100.0 4.5E-40 9.8E-45 311.7 18.5 235 89-324 1-251 (263)
335 PLN03140 ABC transporter G fam 100.0 2.4E-39 5.2E-44 380.0 28.1 215 89-306 867-1106(1470)
336 PRK11147 ABC transporter ATPas 100.0 2.4E-39 5.2E-44 354.8 25.9 204 89-309 3-242 (635)
337 TIGR01271 CFTR_protein cystic 100.0 1.9E-39 4.1E-44 383.1 25.9 213 88-310 1216-1440(1490)
338 COG4167 SapF ABC-type antimicr 100.0 1.4E-39 3E-44 302.0 19.4 229 88-316 3-245 (267)
339 COG1134 TagH ABC-type polysacc 100.0 2.8E-39 6E-44 311.8 21.9 197 104-312 40-238 (249)
340 cd03222 ABC_RNaseL_inhibitor T 100.0 2.6E-39 5.5E-44 302.5 19.0 153 93-307 4-160 (177)
341 PLN03073 ABC transporter F fam 100.0 7.7E-39 1.7E-43 354.4 26.2 202 87-309 506-713 (718)
342 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.4E-39 2E-43 290.3 20.5 155 92-298 2-157 (157)
343 TIGR00954 3a01203 Peroxysomal 100.0 7E-39 1.5E-43 352.5 21.8 192 88-295 450-652 (659)
344 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-39 1.7E-43 375.5 23.4 206 104-310 74-300 (1394)
345 COG4618 ArpD ABC-type protease 100.0 1.1E-38 2.5E-43 331.3 20.3 219 88-311 333-561 (580)
346 COG0396 sufC Cysteine desulfur 100.0 8.7E-38 1.9E-42 298.8 23.3 222 88-311 2-234 (251)
347 KOG0061|consensus 100.0 4E-38 8.6E-43 343.5 23.1 236 88-326 24-284 (613)
348 PRK13409 putative ATPase RIL; 100.0 1.2E-38 2.5E-43 346.6 17.8 193 93-297 77-287 (590)
349 cd03238 ABC_UvrA The excision 100.0 6.7E-38 1.4E-42 292.7 19.7 155 104-299 8-166 (176)
350 PLN03140 ABC transporter G fam 100.0 7.3E-38 1.6E-42 367.5 21.2 204 104-310 178-427 (1470)
351 TIGR00957 MRP_assoc_pro multi 100.0 3.1E-37 6.7E-42 365.1 23.5 207 88-311 635-851 (1522)
352 PLN03232 ABC transporter C fam 100.0 9.3E-37 2E-41 360.6 24.3 207 88-311 613-829 (1495)
353 KOG0056|consensus 100.0 3.2E-37 7E-42 318.3 17.6 219 89-312 537-763 (790)
354 PLN03073 ABC transporter F fam 100.0 1.9E-37 4.2E-42 343.2 16.9 217 87-309 175-430 (718)
355 COG0488 Uup ATPase components 100.0 9.8E-37 2.1E-41 326.4 21.3 204 88-307 2-237 (530)
356 COG4107 PhnK ABC-type phosphon 100.0 9.9E-37 2.1E-41 281.2 17.9 225 87-317 4-248 (258)
357 TIGR01271 CFTR_protein cystic 100.0 2.2E-36 4.7E-41 357.2 25.6 190 104-311 439-637 (1490)
358 PLN03130 ABC transporter C fam 100.0 1.8E-36 3.9E-41 359.4 24.5 202 88-311 613-829 (1622)
359 COG4136 ABC-type uncharacteriz 100.0 1.2E-36 2.7E-41 274.8 15.4 199 89-294 2-207 (213)
360 PTZ00243 ABC transporter; Prov 100.0 1E-35 2.2E-40 352.3 23.3 190 104-311 673-871 (1560)
361 cd03270 ABC_UvrA_I The excisio 100.0 2.1E-35 4.5E-40 285.1 20.4 192 104-303 8-226 (226)
362 COG4133 CcmA ABC-type transpor 100.0 7.4E-36 1.6E-40 278.0 15.3 192 88-285 1-193 (209)
363 COG4778 PhnL ABC-type phosphon 100.0 8.5E-35 1.8E-39 267.4 14.0 209 88-296 3-227 (235)
364 COG5265 ATM1 ABC-type transpor 100.0 9.9E-35 2.2E-39 296.6 14.8 219 88-311 261-487 (497)
365 cd03271 ABC_UvrA_II The excisi 100.0 1E-33 2.2E-38 279.6 18.4 196 104-305 8-261 (261)
366 KOG0054|consensus 100.0 8.8E-34 1.9E-38 325.5 19.0 218 88-312 1137-1364(1381)
367 PF00005 ABC_tran: ABC transpo 100.0 4.2E-34 9E-39 252.3 11.2 132 107-251 1-137 (137)
368 COG0488 Uup ATPase components 100.0 1.2E-32 2.7E-37 294.8 21.7 200 87-308 319-523 (530)
369 COG1129 MglA ABC-type sugar tr 100.0 1.7E-32 3.7E-37 289.1 21.6 216 86-307 260-487 (500)
370 KOG0054|consensus 100.0 4.1E-32 9E-37 311.8 25.8 205 85-311 514-732 (1381)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 5.5E-33 1.2E-37 263.4 14.4 164 108-296 14-190 (197)
372 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.3E-32 5.1E-37 264.4 13.7 190 97-295 10-234 (243)
373 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3.9E-33 8.5E-38 267.3 4.2 184 90-296 6-204 (212)
374 COG4138 BtuD ABC-type cobalami 100.0 1.2E-32 2.5E-37 254.4 7.0 219 89-322 3-230 (248)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.5E-31 5.5E-36 254.0 12.4 193 89-299 5-211 (213)
376 KOG0065|consensus 100.0 7.7E-31 1.7E-35 296.2 16.7 214 103-324 803-1030(1391)
377 cd03273 ABC_SMC2_euk Eukaryoti 100.0 4.4E-31 9.5E-36 258.1 10.8 197 90-295 6-242 (251)
378 cd03240 ABC_Rad50 The catalyti 100.0 5.4E-30 1.2E-34 244.0 14.0 165 110-296 16-197 (204)
379 PRK00349 uvrA excinuclease ABC 100.0 3.8E-29 8.3E-34 282.5 22.4 212 88-312 613-929 (943)
380 COG3845 ABC-type uncharacteriz 100.0 9E-29 2E-33 257.5 21.7 221 86-307 254-489 (501)
381 COG4615 PvdE ABC-type sideroph 100.0 8.5E-30 1.8E-34 258.7 9.6 202 88-302 321-529 (546)
382 PRK00635 excinuclease ABC subu 100.0 7E-28 1.5E-32 283.2 25.2 215 89-311 600-907 (1809)
383 TIGR00630 uvra excinuclease AB 100.0 5.3E-27 1.2E-31 264.8 22.4 124 179-308 789-923 (924)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.8E-27 3.9E-32 225.9 14.8 173 105-298 10-192 (198)
385 KOG0927|consensus 99.9 1.2E-27 2.7E-32 250.5 9.6 201 87-307 387-593 (614)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.8E-27 1E-31 229.4 10.9 194 90-296 4-233 (247)
387 COG4170 SapD ABC-type antimicr 99.9 2E-26 4.3E-31 218.5 13.2 234 88-321 2-259 (330)
388 KOG0927|consensus 99.9 2.1E-26 4.5E-31 241.4 13.9 219 87-309 73-308 (614)
389 COG1245 Predicted ATPase, RNas 99.9 7.4E-26 1.6E-30 233.4 17.2 187 87-295 340-530 (591)
390 COG4178 ABC-type uncharacteriz 99.9 8.5E-25 1.9E-29 235.0 19.1 186 87-290 390-582 (604)
391 KOG0062|consensus 99.9 3.2E-25 7E-30 231.4 9.8 200 87-308 78-283 (582)
392 KOG2355|consensus 99.9 1.2E-23 2.6E-28 199.0 17.1 213 87-308 11-235 (291)
393 KOG0062|consensus 99.9 5.8E-24 1.2E-28 222.1 14.6 199 85-301 358-559 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.7E-24 1E-28 202.0 11.1 145 107-303 17-172 (200)
395 KOG0066|consensus 99.9 1.2E-23 2.6E-28 215.9 13.3 192 86-299 583-779 (807)
396 KOG0060|consensus 99.9 3E-22 6.5E-27 211.6 20.1 199 86-296 430-641 (659)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.8E-22 3.9E-27 193.8 13.4 84 216-299 120-212 (213)
398 KOG0065|consensus 99.9 1.1E-22 2.4E-27 230.6 13.8 204 104-310 128-351 (1391)
399 cd03239 ABC_SMC_head The struc 99.9 2.4E-21 5.1E-26 181.3 15.2 74 223-296 95-172 (178)
400 cd03283 ABC_MutS-like MutS-lik 99.9 7.2E-22 1.6E-26 187.8 10.4 147 104-295 14-164 (199)
401 cd03285 ABC_MSH2_euk MutS2 hom 99.9 1E-21 2.2E-26 189.9 9.7 152 104-304 17-175 (222)
402 cd03227 ABC_Class2 ABC-type Cl 99.9 3.9E-21 8.4E-26 176.4 13.0 139 108-296 12-155 (162)
403 cd03241 ABC_RecN RecN ATPase i 99.9 2.6E-21 5.5E-26 192.3 12.1 79 219-298 167-249 (276)
404 COG1245 Predicted ATPase, RNas 99.9 1.4E-21 3.1E-26 201.9 10.1 186 94-295 79-287 (591)
405 cd03243 ABC_MutS_homologs The 99.9 5.4E-22 1.2E-26 188.1 6.3 156 109-309 21-178 (202)
406 PRK00635 excinuclease ABC subu 99.8 3.4E-20 7.4E-25 218.8 19.1 198 107-311 1506-1797(1809)
407 PRK00349 uvrA excinuclease ABC 99.8 3.6E-20 7.7E-25 210.1 15.7 132 177-310 434-585 (943)
408 COG0178 UvrA Excinuclease ATPa 99.8 6.4E-20 1.4E-24 199.9 16.7 136 179-322 783-929 (935)
409 cd03282 ABC_MSH4_euk MutS4 hom 99.8 1.6E-20 3.4E-25 179.4 10.3 139 104-287 16-156 (204)
410 KOG0064|consensus 99.8 1.9E-20 4E-25 196.1 11.1 180 88-287 480-674 (728)
411 TIGR00630 uvra excinuclease AB 99.8 1.4E-19 3.1E-24 204.8 16.3 131 178-310 433-583 (924)
412 COG2401 ABC-type ATPase fused 99.8 1.8E-19 4E-24 184.6 13.8 178 104-300 396-588 (593)
413 KOG0066|consensus 99.8 1.1E-20 2.4E-25 194.3 2.6 208 89-302 264-490 (807)
414 cd03242 ABC_RecF RecF is a rec 99.8 1.8E-18 3.8E-23 171.4 17.1 77 219-299 180-269 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.6E-18 3.5E-23 166.8 9.9 158 104-310 18-181 (216)
416 KOG0063|consensus 99.7 3.7E-17 8E-22 168.3 13.7 181 97-295 343-531 (592)
417 TIGR02858 spore_III_AA stage I 99.7 1.7E-17 3.8E-22 165.0 11.0 142 118-309 112-268 (270)
418 smart00534 MUTSac ATPase domai 99.7 3E-17 6.5E-22 153.9 6.0 84 216-300 55-140 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2.2E-15 4.9E-20 144.8 12.8 135 104-287 16-159 (213)
420 TIGR01069 mutS2 MutS2 family p 99.6 1.1E-15 2.3E-20 171.3 9.6 133 109-286 313-449 (771)
421 PRK00064 recF recombination pr 99.6 5.3E-14 1.1E-18 145.3 19.4 78 219-299 270-359 (361)
422 cd03287 ABC_MSH3_euk MutS3 hom 99.5 1.7E-14 3.6E-19 139.8 10.2 139 104-287 18-159 (222)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.2E-14 2.6E-19 138.7 6.7 180 108-294 16-211 (220)
424 PTZ00132 GTP-binding nuclear p 99.5 1.1E-14 2.3E-19 138.6 6.3 49 221-269 149-204 (215)
425 PRK07721 fliI flagellum-specif 99.5 7.5E-14 1.6E-18 147.4 12.6 177 104-307 146-340 (438)
426 cd00820 PEPCK_HprK Phosphoenol 99.5 2.3E-14 4.9E-19 123.9 6.1 76 104-188 2-77 (107)
427 PRK00409 recombination and DNA 99.5 4.2E-14 9.1E-19 158.9 8.4 145 111-301 320-469 (782)
428 KOG0063|consensus 99.5 1.2E-13 2.7E-18 142.6 9.4 171 115-295 98-287 (592)
429 cd01128 rho_factor Transcripti 99.5 7.2E-14 1.6E-18 137.6 7.2 177 111-300 10-212 (249)
430 TIGR00634 recN DNA repair prot 99.4 2E-13 4.2E-18 148.7 9.7 77 221-298 439-519 (563)
431 TIGR00618 sbcc exonuclease Sbc 99.4 2.8E-13 6.1E-18 156.9 10.9 82 216-297 944-1036(1042)
432 PHA02562 46 endonuclease subun 99.4 1.6E-13 3.4E-18 148.3 8.1 80 218-299 464-555 (562)
433 cd03286 ABC_MSH6_euk MutS6 hom 99.4 3.8E-12 8.3E-17 123.1 14.6 140 104-287 17-158 (218)
434 PF13304 AAA_21: AAA domain; P 99.4 1E-12 2.2E-17 121.9 9.7 67 219-285 233-302 (303)
435 COG0178 UvrA Excinuclease ATPa 99.4 4.3E-12 9.4E-17 139.4 15.5 144 178-323 427-588 (935)
436 PRK08533 flagellar accessory p 99.4 3.6E-12 7.8E-17 124.0 13.4 148 90-284 8-164 (230)
437 PRK13695 putative NTPase; Prov 99.4 3.9E-13 8.5E-18 124.3 4.8 82 217-302 73-156 (174)
438 PRK10869 recombination and rep 99.4 1.7E-12 3.6E-17 141.2 10.4 76 222-298 430-509 (553)
439 PRK06793 fliI flagellum-specif 99.4 2.1E-12 4.6E-17 135.9 10.2 171 88-305 129-306 (432)
440 PRK03918 chromosome segregatio 99.3 2.1E-12 4.6E-17 146.6 10.1 79 217-295 783-867 (880)
441 cd01124 KaiC KaiC is a circadi 99.3 7E-12 1.5E-16 115.8 11.3 142 119-295 1-163 (187)
442 TIGR02788 VirB11 P-type DNA tr 99.3 5E-12 1.1E-16 128.0 9.2 144 110-309 137-280 (308)
443 PRK01156 chromosome segregatio 99.3 1.1E-11 2.4E-16 141.4 12.9 78 218-295 797-883 (895)
444 PRK10246 exonuclease subunit S 99.3 9.7E-12 2.1E-16 144.2 10.8 81 216-296 943-1032(1047)
445 PRK13830 conjugal transfer pro 99.3 1.2E-10 2.6E-15 132.0 17.5 69 238-306 650-729 (818)
446 PRK06995 flhF flagellar biosyn 99.2 1.6E-11 3.5E-16 130.9 9.1 151 105-281 244-401 (484)
447 cd01120 RecA-like_NTPases RecA 99.2 8.5E-11 1.8E-15 104.3 10.0 130 119-285 1-140 (165)
448 TIGR02168 SMC_prok_B chromosom 99.2 2.3E-11 5E-16 140.5 8.0 79 216-295 1083-1165(1179)
449 TIGR00606 rad50 rad50. This fa 99.1 6.7E-11 1.5E-15 140.1 8.7 70 218-287 1195-1275(1311)
450 PRK02224 chromosome segregatio 99.1 2.4E-10 5.2E-15 130.2 9.4 80 218-297 777-869 (880)
451 TIGR02169 SMC_prok_A chromosom 99.1 2.9E-10 6.4E-15 131.8 8.5 79 217-296 1069-1151(1164)
452 TIGR03238 dnd_assoc_3 dnd syst 99.0 5.2E-11 1.1E-15 126.1 1.8 68 104-174 19-87 (504)
453 PRK06067 flagellar accessory p 99.0 2.5E-09 5.3E-14 103.5 11.8 141 113-284 21-167 (234)
454 cd01131 PilT Pilus retraction 99.0 1.8E-09 3.8E-14 102.6 9.9 118 119-294 3-121 (198)
455 COG3910 Predicted ATPase [Gene 99.0 2.4E-09 5.3E-14 101.0 10.6 82 217-299 124-206 (233)
456 cd02023 UMPK Uridine monophosp 99.0 5.8E-10 1.2E-14 105.0 4.8 114 119-257 1-115 (198)
457 PRK07196 fliI flagellum-specif 99.0 7.1E-10 1.5E-14 117.1 5.9 90 104-194 143-241 (434)
458 TIGR03881 KaiC_arch_4 KaiC dom 98.9 3.5E-10 7.6E-15 108.7 2.5 158 113-295 16-188 (229)
459 smart00382 AAA ATPases associa 98.9 3.5E-08 7.6E-13 83.7 13.8 118 116-281 1-125 (148)
460 TIGR01026 fliI_yscN ATPase Fli 98.9 1.7E-08 3.6E-13 107.2 13.6 179 104-308 151-346 (440)
461 TIGR02655 circ_KaiC circadian 98.8 7.2E-11 1.6E-15 126.6 -6.4 159 113-295 17-190 (484)
462 TIGR00611 recf recF protein. A 98.8 4.1E-09 8.9E-14 109.4 6.8 63 221-286 274-345 (365)
463 PRK06002 fliI flagellum-specif 98.8 7E-09 1.5E-13 109.8 8.4 88 86-175 136-230 (450)
464 cd01130 VirB11-like_ATPase Typ 98.8 5.6E-09 1.2E-13 98.0 5.7 82 107-191 15-98 (186)
465 COG0419 SbcC ATPase involved i 98.8 1.5E-08 3.3E-13 116.3 10.3 79 218-296 811-897 (908)
466 PRK13891 conjugal transfer pro 98.8 2.4E-07 5.1E-12 105.9 18.6 55 233-287 680-735 (852)
467 PRK13898 type IV secretion sys 98.7 2.6E-07 5.5E-12 105.0 17.9 50 236-285 638-688 (800)
468 cd01125 repA Hexameric Replica 98.7 4.6E-08 1E-12 95.2 8.3 47 236-283 107-160 (239)
469 TIGR01420 pilT_fam pilus retra 98.7 8.3E-08 1.8E-12 98.8 9.7 123 114-294 119-242 (343)
470 PRK06315 type III secretion sy 98.7 3.8E-08 8.2E-13 104.3 7.2 119 104-224 152-293 (442)
471 TIGR02680 conserved hypothetic 98.6 4.6E-08 1E-12 116.4 7.8 63 217-282 1242-1316(1353)
472 PRK05399 DNA mismatch repair p 98.6 2.1E-07 4.5E-12 106.3 12.7 137 104-290 595-738 (854)
473 PLN03210 Resistant to P. syrin 98.6 1.4E-07 3E-12 111.0 11.1 143 110-294 200-348 (1153)
474 PRK14079 recF recombination pr 98.6 8.9E-08 1.9E-12 98.8 7.8 77 221-303 262-347 (349)
475 PRK00300 gmk guanylate kinase; 98.6 5.6E-08 1.2E-12 91.7 5.6 28 115-142 3-30 (205)
476 PRK10078 ribose 1,5-bisphospho 98.6 8.9E-08 1.9E-12 89.7 5.8 78 117-197 2-80 (186)
477 cd01876 YihA_EngB The YihA (En 98.6 1.6E-07 3.5E-12 83.1 7.1 138 120-267 2-168 (170)
478 PRK09825 idnK D-gluconate kina 98.5 5.5E-08 1.2E-12 91.0 3.6 67 116-187 2-68 (176)
479 PF00488 MutS_V: MutS domain V 98.5 3.6E-06 7.7E-11 82.5 15.5 48 239-286 121-170 (235)
480 PRK13873 conjugal transfer ATP 98.5 1.2E-06 2.7E-11 99.6 13.8 50 237-286 632-682 (811)
481 TIGR00416 sms DNA repair prote 98.5 2.2E-07 4.7E-12 99.2 6.8 139 113-299 90-248 (454)
482 TIGR02903 spore_lon_C ATP-depe 98.4 1.1E-06 2.3E-11 97.3 11.4 110 115-267 173-291 (615)
483 TIGR00554 panK_bact pantothena 98.4 2.1E-07 4.5E-12 93.9 4.7 74 118-193 63-138 (290)
484 PRK08149 ATP synthase SpaL; Va 98.4 4E-07 8.7E-12 96.3 6.7 70 104-174 139-215 (428)
485 PRK09270 nucleoside triphospha 98.4 4.1E-07 8.9E-12 88.1 5.4 74 115-193 31-108 (229)
486 TIGR00152 dephospho-CoA kinase 98.4 4.2E-07 9.1E-12 85.2 5.2 70 226-297 61-133 (188)
487 PRK10416 signal recognition pa 98.4 2.6E-07 5.7E-12 94.3 3.8 73 115-187 112-190 (318)
488 cd01854 YjeQ_engC YjeQ/EngC. 98.3 6.4E-07 1.4E-11 90.0 5.9 85 107-192 152-243 (287)
489 PRK07594 type III secretion sy 98.3 5.9E-07 1.3E-11 95.1 5.9 66 87-154 127-192 (433)
490 TIGR00235 udk uridine kinase. 98.3 2.1E-07 4.5E-12 88.6 2.1 29 115-143 4-32 (207)
491 TIGR03061 pip_yhgE_Nterm YhgE/ 98.3 1.1E-06 2.4E-11 81.0 6.7 79 360-457 22-107 (164)
492 cd01136 ATPase_flagellum-secre 98.3 1.3E-06 2.8E-11 89.5 7.4 61 92-154 46-106 (326)
493 cd00009 AAA The AAA+ (ATPases 98.3 2.6E-06 5.6E-11 73.1 8.0 55 228-283 72-131 (151)
494 PRK00454 engB GTP-binding prot 98.3 3.3E-07 7.1E-12 85.0 2.5 64 204-271 127-195 (196)
495 PRK09862 putative ATP-dependen 98.3 6.4E-07 1.4E-11 96.6 4.5 62 92-155 187-248 (506)
496 TIGR02546 III_secr_ATP type II 98.2 1.6E-06 3.5E-11 91.8 6.9 79 104-183 133-217 (422)
497 PRK01889 GTPase RsgA; Reviewed 98.2 1.5E-06 3.3E-11 90.0 6.5 78 107-188 185-262 (356)
498 cd01121 Sms Sms (bacterial rad 98.2 4.2E-06 9.2E-11 87.3 9.0 37 113-149 78-114 (372)
499 PRK14722 flhF flagellar biosyn 98.2 3.4E-06 7.4E-11 87.9 7.9 72 104-195 124-195 (374)
500 PRK14721 flhF flagellar biosyn 98.2 1.3E-06 2.8E-11 92.3 4.7 64 114-197 188-251 (420)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-61 Score=458.48 Aligned_cols=230 Identities=26% Similarity=0.370 Sum_probs=212.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-chhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-~~~~~r~~ 166 (457)
++|+++|++|+||+ +.||+|||++|++||+++|+||||||||||||||.||.+|++|+|+++|.++... +....|++
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 47999999999999 9999999999999999999999999999999999999999999999999776432 34567899
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+|+|||+++|||++||.||+.+.. ...++++++.++++.++|+.+||.+ ++.+|.+|||||||||+|||||+.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 999999999999999999998854 4578999999999999999999965 89999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
++|||||+|||....++.+.++.++++|+|.|+|||+|.+|+. ||||++|++|+++++|+|++++.+...+.+.+
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~ 234 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999976 89999999999999999999998765544443
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=454.15 Aligned_cols=231 Identities=28% Similarity=0.436 Sum_probs=216.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|+||+|++ +.||+|+||+|++||+++|+|||||||||+||||.+++.|++|+|+++|+++...+...+|++||
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 6899999999998 99999999999999999999999999999999999999999999999999998887778899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|+-|...|||++||.||+.+...+.|+++++++++++++++.++|+. ++|+|++|||||||||.+||||+.+|++|+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 99999999999999999999999999999999999999999999952 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
+||||++|||.+|.++-+.+..+ ++-|+|||+|||||+||.. +|||++|++|+++..++|++++.++..+.+++.+
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~ 236 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF 236 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHh
Confidence 99999999999999999885554 4559999999999999965 9999999999999999999999887655555444
No 3
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-58 Score=432.28 Aligned_cols=236 Identities=25% Similarity=0.411 Sum_probs=222.5
Q ss_pred ceEEEeeEEEeCCCCce-eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 89 ADEGKNTEKEELKPSNV-VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~-aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
|+++.+++|+|+. ++ +++||||++++||++||+|||||||||+||||++++.|++|.|+++|.+....+ ...|++|
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKI 77 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhc
Confidence 6899999999998 55 999999999999999999999999999999999999999999999998876543 4578899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|.++.+..+|..||++|||.|++++++++..+++++++++.+.|+|.. +|+++.+||.||||||+|||||+|+|++++|
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 999988999999999999999999999999999999999999999955 8999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~~ 325 (457)
||||||||..+++.+.+.+..++++|++||++||.|+|++. ||||+++++|+++..|+++++..+....+++++|....
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f~~~l 237 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFAL 237 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHHHHhh
Confidence 99999999999999999999988889999999999999985 99999999999999999999999888899999998665
Q ss_pred cC
Q psy10858 326 ND 327 (457)
Q Consensus 326 ~~ 327 (457)
..
T Consensus 238 ~~ 239 (245)
T COG4555 238 KL 239 (245)
T ss_pred cC
Confidence 44
No 4
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.8e-57 Score=451.72 Aligned_cols=221 Identities=38% Similarity=0.655 Sum_probs=205.5
Q ss_pred CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+++++|++|+|+ + +.||+||||+|++||++||+||||||||||||+|+|+++|++|+|.++|.++... ....+++
T Consensus 3 ~~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ 79 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRR 79 (293)
T ss_pred ceeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhh
Confidence 4688999999999 7 8999999999999999999999999999999999999999999999999887653 3456788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|||+||++.+|+.+||+|||.|++.+++.+.....++++++++.++|.. .++++++||+||||||+||+||+++|++||
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999876666778999999999965 578899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+||||.++..||++++.++++| +||++|||.+++++. ||||++|++|++++.|+++++...
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999988888776 899999999999986 999999999999999999987654
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-57 Score=446.08 Aligned_cols=233 Identities=24% Similarity=0.361 Sum_probs=212.9
Q ss_pred ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhh
Q psy10858 89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~ 162 (457)
||++++++|.|... ...||+||||+|++|||+||+|.||||||||+|||.+|.+|++|+|.++|+++...+ ...
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999862 257999999999999999999999999999999999999999999999998876543 345
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
.|++||++||+++|+...||++|++|...+.|++++++++|+.++++.+||++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 68899999999999999999999999999999999999999999999999965 79999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
+|||.|||||+|||...+.|+++++.+ ++-|.||+++||.|+.++. ||||++|++|+|++.|+..+++..+..+ +.+
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~-~t~ 239 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA-ITQ 239 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH-HHH
Confidence 999999999999999999999997665 5569999999999999976 9999999999999999999999876433 333
Q ss_pred HHH
Q psy10858 320 VFY 322 (457)
Q Consensus 320 ~f~ 322 (457)
.|.
T Consensus 240 ~fi 242 (339)
T COG1135 240 EFI 242 (339)
T ss_pred HHH
Confidence 344
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.3e-56 Score=425.60 Aligned_cols=233 Identities=29% Similarity=0.404 Sum_probs=212.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~ 163 (457)
++.|++++|+++||+ +++++||||+|++||+++|+||||+|||||||+|.|+++|++|+|+++|+++...+. ...
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 578999999999999 999999999999999999999999999999999999999999999999999865543 246
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
++++|++||+-+||..|||+||+.|..+-+ +++++.+++.+..-++.+||. . ++++|++|||||++|++||||++.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 789999999999999999999999987654 688888999998899999995 3 7999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~ 318 (457)
|+||++||||+||||.+...|-++|+.+++. |.|+++||||++++.. |||++++.+|+|++.|+++++.+. ..+.+.
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s-d~P~v~ 242 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS-DDPWVR 242 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC-CCHHHH
Confidence 9999999999999999999999998877665 9999999999999976 899999999999999999999874 345555
Q ss_pred HHHH
Q psy10858 319 DVFY 322 (457)
Q Consensus 319 ~~f~ 322 (457)
+.|.
T Consensus 243 qf~~ 246 (263)
T COG1127 243 QFFN 246 (263)
T ss_pred HHhc
Confidence 5543
No 7
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.5e-55 Score=443.58 Aligned_cols=222 Identities=32% Similarity=0.535 Sum_probs=205.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+++++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... ...+++
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 368999999999997 88999999999999999999999999999999999999999999999999875433 235678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|||+||++.+|+.+||+||+.+++..++.+..+..+++.++++.+++.. .++++++|||||||||+||+||+++|++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999999888888877767778889999999965 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+||||.+++.+|++++.++++|+|||++||++++++. ||||++|++|++++.|+++++...
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999988877779999999999999975 999999999999999999998654
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-56 Score=447.87 Aligned_cols=222 Identities=28% Similarity=0.394 Sum_probs=208.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++||+|+||+ ..||+++||+|++||+++|+||||||||||||||+||.+|++|+|+++|++++...++ .|.|
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGI 77 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCE
Confidence 36899999999998 4499999999999999999999999999999999999999999999999999875543 4789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|+|||+.+|||+|||+||+.|..++.+++++++.++++++++.+++.+ ++++|.+|||||||||++||||+.+|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+|+||+..|..+...++.+.+ -|.|+|++|||-.||.. +|||++|++|+|...|+|.++.+++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999988766654 49999999999999976 99999999999999999999988754
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-55 Score=432.36 Aligned_cols=230 Identities=27% Similarity=0.359 Sum_probs=207.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++...+.++..+++
T Consensus 1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 36899999999998 9999999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
||+||.+...+.+||+|.+.++..- ++...++..+.+.++++.+++.+ +++.+.+|||||||||.|||||+++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 9999999888899999999876432 23223444557888999999965 799999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHH
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDV 320 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~ 320 (457)
+|+||||||.||+..+.+++++++.+. ++|+|||+|+||++.|. .||++++|++|++++.|+|+++++. +.+.++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~---e~l~~V 235 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV 235 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH---HHHHHH
Confidence 999999999999999999999977765 66999999999999986 5999999999999999999998864 677777
Q ss_pred HH
Q psy10858 321 FY 322 (457)
Q Consensus 321 f~ 322 (457)
|.
T Consensus 236 yg 237 (258)
T COG1120 236 YG 237 (258)
T ss_pred hC
Confidence 75
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-55 Score=449.54 Aligned_cols=228 Identities=28% Similarity=0.398 Sum_probs=207.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++|++|+||+ ..||+||||+|++||+++|+||||||||||||||+|+..|++|+|+++|+++...+. .+|.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhccc
Confidence 68999999999997 999999999999999999999999999999999999999999999999999987543 35789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|+|||+.+|||+|||+||+.|+.+..+ .+++++.+++.++++.++|.. .+++|.+|||||||||+|||||+.+|++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 999999999999999999999998555 455678899999999999965 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
||||.|+||...|.++...++.+ ++.|.|.|++|||-+||.. +|||++|++|+|...|+|+++..++....+.+
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~ 235 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVAD 235 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHH
Confidence 99999999999999998875554 5569999999999999975 89999999999999999999988765444433
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-55 Score=422.54 Aligned_cols=205 Identities=29% Similarity=0.429 Sum_probs=191.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+++++++++.|+. ..||+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++.. +...+
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCE
Confidence 46899999999998 999999999999999999999999999999999999999999999999988732 35789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|||||++.|+|.+||.||+.+.....+.++++..+++.++++.+||.. .+++|++|||||||||+|||||+++|++|+|
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999888888888889999999999965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC--CeE
Q psy10858 247 DEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK--GRI 299 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~--GkI 299 (457)
|||+++||..+|..+.+. ++.+.+.++||++||||++||-. +|||++|.+ |+|
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999998 66677789999999999999965 999999998 445
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.5e-54 Score=439.87 Aligned_cols=222 Identities=32% Similarity=0.519 Sum_probs=203.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.
T Consensus 39 ~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence 457999999999998 88999999999999999999999999999999999999999999999999875432 345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+++.+||.||+.+++..++.+..+..+++.++++.++|.. .++++++|||||||||+||+||+++|++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998888777766666677788899999965 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+||||.+++.+|++++.++++|+|||+|||++++++. ||||++|++|++++.|+++++.+.
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999988877779999999999999975 999999999999999999998754
No 13
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.9e-55 Score=419.82 Aligned_cols=221 Identities=26% Similarity=0.478 Sum_probs=210.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
+++++++|+|+||+ +.||+|+||+|++|+++|++|+|||||||+++||.|+++|++|+|.|+|+++.. ..+.+|
T Consensus 1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 47899999999999 999999999999999999999999999999999999999999999999998864 345789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+|.+..||+.+||.|.|.|++++.||++.++++++..+++++++.. ..+++.+||.|++||+.+..|++|+|+++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 999999999999999999999999999999999999999999999954 7899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
|||+|||||++.+.+.+.+..++++|.|||+|||.|+.++. ||++++|++|+.+..|+.+++++.++.
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 99999999999999999988889999999999999999976 999999999999999999999887654
No 14
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-53 Score=434.43 Aligned_cols=225 Identities=22% Similarity=0.302 Sum_probs=203.3
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~ 163 (457)
||+++|++|+|+.+ ...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...... ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999999632 25799999999999999999999999999999999999999999999999988654322 24
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+++|||+||++.+++.+||+||+.+.....+.++++..+++.++++.++|.+ .++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999999998877777777777888999999999965 799999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
+||||||||+|||.+++.++++++.+.++ |.|||++||+++++.. ||||++|++|++++.|++++++....
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~ 233 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC
Confidence 99999999999999999999998877654 9999999999999965 99999999999999999999986543
No 15
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-53 Score=434.21 Aligned_cols=221 Identities=27% Similarity=0.391 Sum_probs=202.8
Q ss_pred ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
+|+++|++++| ++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--ADRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 68999999999 66 789999999999999999999999999999999999999999999999998865432 24789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|||||++.+|+.+||+||+.|..+..+.++.+..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999877777777777788999999999965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||||++||+..++.+++.++.+.++ |+|+|+||||++++.. |||+++|++|++++.|+++++.++..
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 9999999999999999997776554 9999999999999965 99999999999999999999987643
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-53 Score=408.36 Aligned_cols=211 Identities=29% Similarity=0.404 Sum_probs=190.7
Q ss_pred ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh
Q psy10858 89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~ 162 (457)
+++++||+|.|+.+. ..||++|||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|.++...+. ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 478999999997532 479999999999999999999999999999999999999999999999988875542 23
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCC-CCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLE-RPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~-~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
++++|||+||+++|.+++||.||+.+...+.+.+.....+++..+++.++|. ..+ ++|.+|||||||||+|||||+++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999988888877666677788899999996 444 88999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
|++|+.||||.+||+.+.+.+++++..+. +.|+|||+||||.+.|..|||++.|++|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 99999999999999999999999977764 559999999999999999999999999994
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=414.22 Aligned_cols=226 Identities=29% Similarity=0.396 Sum_probs=196.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++|++++|++ ..||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++.... ..+.+|
T Consensus 3 ~~i~v~nl~v~y~~--~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGN--RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---RKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECC--EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc---ccCCeE
Confidence 57999999999997 5799999999999999999999999999999999999999999999999876542 124789
Q ss_pred EEEcCCCCC--CCCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 168 GYMPQELAM--FGELTIKETLNFFGMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 168 GyvpQ~~~L--~~~lTV~EnL~~~~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
|||||...+ -..+||+|.+.++... ++...+..+++++++++.+++.+ .++++++|||||+|||.|||||+.+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 999996643 2347999999875321 22223344788999999999965 7999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
|++|+|||||+|+|+.++..|+++++.++++|+||++||||++.+.. +|+|++| ++++++.|+|+++.+. +.+..
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~---~~l~~ 233 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE---ENLEK 233 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH---HHHHH
Confidence 99999999999999999999999999998889999999999999965 9999999 7889999999998754 56666
Q ss_pred HHH
Q psy10858 320 VFY 322 (457)
Q Consensus 320 ~f~ 322 (457)
+|.
T Consensus 234 ~~g 236 (254)
T COG1121 234 AFG 236 (254)
T ss_pred HhC
Confidence 665
No 18
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.3e-53 Score=432.10 Aligned_cols=222 Identities=28% Similarity=0.363 Sum_probs=204.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++..... .++.+
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDY 78 (353)
T ss_pred cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 47999999999997 889999999999999999999999999999999999999999999999998764332 35789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+||++.+|+.+||+||+.|....++.+..+..++++++++.++|.. +++++.+|||||||||+|||||+.+|++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999877777777778888999999999965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||||++||+..++.+++.++.+.+ .|.|+|++|||++++.. ||||++|++|++++.|+++++.+...
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999999777655 49999999999999965 99999999999999999999987643
No 19
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.3e-53 Score=422.34 Aligned_cols=219 Identities=24% Similarity=0.429 Sum_probs=201.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.++++|++++|++ +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.++|.++... ....++++|
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hHHHHhceE
Confidence 5899999999987 8899999999999999999999999999999999999999999999999887542 234567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+++.+||.||+.+++.+++.+.++..++++++++.+++.. .++++++|||||||||+||+||+++|++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999888888776666777889999999965 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+||||.+++.+|++++.+++ ++|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999888754 7999999999999975 999999999999999999998654
No 20
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.8e-53 Score=422.31 Aligned_cols=221 Identities=33% Similarity=0.535 Sum_probs=200.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... ...++++
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 57999999999987 78999999999999999999999999999999999999999999999998775322 3346789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+||++.+++.+||+||+.+++..++.+.....+++.++++.+++.. .++++++|||||||||+||+||+++|++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999988776666665555667778899999965 7899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999988877779999999999999965 999999999999999999988654
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-52 Score=430.38 Aligned_cols=222 Identities=24% Similarity=0.374 Sum_probs=204.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++..... .+++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 47999999999987 889999999999999999999999999999999999999999999999998764332 34789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+||++.+|+.+||+||+.|....++.++.+..+++.++++.+++.. +++++.+|||||||||+|||||+.+|++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999887777777778888999999999965 7899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||||+|||+..+..+++.++.+.+ .|+|+|++|||++++.. ||||++|++|+++..|+++++..+..
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999999777654 49999999999999965 99999999999999999999987654
No 22
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-54 Score=405.32 Aligned_cols=231 Identities=26% Similarity=0.401 Sum_probs=209.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~ 166 (457)
..+.++|+.|+|++ +.|+++|||+|++||++||+|||||||||.+.|++|+.+|++|+|+++|.+++..+. ...|..
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 46899999999999 999999999999999999999999999999999999999999999999999987543 345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH--HHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDES--IWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~--~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|||+||+++.|..|||+||+.....++..+.+ +.+.+++.+++.|.+.+ .+++..+||||||||+.|||||+.+|++
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 99999999999999999999988877764444 44455779999999976 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
++|||||+|+||.+...|.++++.+++.|..|+||-|+..|.. .|||.++|++|+|+++|+|+++.+. +.+.+.|+
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n---~~Vr~~YL 237 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN---EDVRRVYL 237 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC---hhhhhhcc
Confidence 9999999999999999999999999999999999999999975 5999999999999999999999875 55666665
Q ss_pred h
Q psy10858 323 K 323 (457)
Q Consensus 323 ~ 323 (457)
.
T Consensus 238 G 238 (243)
T COG1137 238 G 238 (243)
T ss_pred c
Confidence 3
No 23
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-52 Score=403.75 Aligned_cols=219 Identities=29% Similarity=0.410 Sum_probs=194.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcCc
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~~ 166 (457)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... ...++.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999987 789999999999999999999999999999999999999999999999987754322 234678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++.+++.+||.||+.+....+ +.+.++..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998865433 3455555667888999999964 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999887765 48999999999999865 99999999999999999988764
No 24
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2e-52 Score=430.11 Aligned_cols=220 Identities=23% Similarity=0.313 Sum_probs=202.9
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--eEEEEcCccCCCCchhhhcCc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ--GEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s--G~I~i~G~~~~~~~~~~~r~~ 166 (457)
.|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++..... .++.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 4889999999997 789999999999999999999999999999999999999999 999999988754332 3468
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|||+||++.+|+.+||+||+.|....++.++.+..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999887777777777888999999999965 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~--g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||||+|||+..+..+++.++.+.++ |+|+|++|||++++.. ||||++|++|+++..|+++++.+..
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999998777665 8999999999999965 9999999999999999999998764
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-52 Score=420.61 Aligned_cols=213 Identities=30% Similarity=0.546 Sum_probs=193.9
Q ss_pred EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L 176 (457)
|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ....++++||+||++.+
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIVPQYASV 77 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHhhcEEecCCCCC
Confidence 46776 7899999999999999999999999999999999999999999999999887542 23346789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp 255 (457)
++.+||+||+.+++..++.+.....+++.++++.+++.. .++++++|||||||||+||+||+++|++|||||||+||||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999999999999888888776666777889999999964 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 256 LVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 256 ~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
.+++.+|++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.++.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 215 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRL 215 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence 99999999988877779999999999999975 9999999999999999999887653
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.6e-52 Score=428.61 Aligned_cols=223 Identities=26% Similarity=0.352 Sum_probs=204.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++..... .++.
T Consensus 12 ~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 87 (375)
T PRK09452 12 SPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRH 87 (375)
T ss_pred CceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 467999999999997 889999999999999999999999999999999999999999999999998764332 3478
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+|+.+||+||+.|.....+.+..+..+++.++++.+++.. +++++.+|||||||||+|||||+.+|++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999877667777777778899999999965 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||+|||+..+..+++.++.+.+ .|+|+|++|||++++.. ||||++|++|+++..|+++++.++..
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999877655 49999999999999865 99999999999999999999987654
No 27
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-53 Score=416.94 Aligned_cols=229 Identities=28% Similarity=0.391 Sum_probs=206.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCCchhhhc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~~~~~~r 164 (457)
++|.++++++.|+. ..+++|||++|+.||.++|+|||||||||||++|+|++.|++|.|.++|+ +.... ....
T Consensus 1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 47899999999999 99999999999999999999999999999999999999999999999998 54432 2335
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++|||+||+.+||+.|||.+|+.|+.+... -++..++.++.++++.+.|.. .+++|.+|||||||||+|||||+.+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999987653 245678889999999999976 79999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
++|+||||+++||...|..+...++.+.++ |.|.++||||.+|+.. ||||++|++|+|...|+|+++....+......
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~ 236 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVAR 236 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceec
Confidence 999999999999999999999997777665 9999999999999965 99999999999999999999988776554444
Q ss_pred H
Q psy10858 320 V 320 (457)
Q Consensus 320 ~ 320 (457)
.
T Consensus 237 f 237 (345)
T COG1118 237 F 237 (345)
T ss_pred c
Confidence 3
No 28
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-52 Score=396.71 Aligned_cols=216 Identities=31% Similarity=0.506 Sum_probs=194.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ....++++||
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999987 7899999999999999999999999999999999999999999999999876432 2334568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999998766666665556677888999999964 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||+|||+.+++.++++++.+.++ |+|||++||+++++.. |||+++|++|+++..|+++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999998777665 8999999999999865 999999999999999887764
No 29
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-52 Score=422.75 Aligned_cols=224 Identities=25% Similarity=0.352 Sum_probs=201.0
Q ss_pred ceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh
Q psy10858 89 ADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~ 163 (457)
||+++|++++|+. .++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+.. ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999972 126799999999999999999999999999999999999999999999999987643322 23
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+++|||+||++.+++.+||.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999999998877777776666778889999999965 689999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
+|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++....
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 232 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999877755 49999999999999875 9999999999999999999987653
No 30
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-52 Score=405.65 Aligned_cols=223 Identities=28% Similarity=0.392 Sum_probs=205.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC-CchhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-IYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~-~~~~~~r~~ 166 (457)
+++++++++++|+++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+... ......+++
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 579999999999874 599999999999999999999999999999999999999999999999988752 344567899
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
||||+|+|. .+..-||.+.+.|.....|++.+++.+++.++++.+++.+ +++.+.+|||||||||+||.+|+.+|++|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 999999993 3445699999999999999999999999999999999965 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||||||||.+++.++++++.+.++ |+|||++|||++++.. |||+++|++|+++.+|+|+++++.
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999998887766 7999999999999965 999999999999999999988764
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.6e-52 Score=424.60 Aligned_cols=221 Identities=29% Similarity=0.406 Sum_probs=200.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++++|
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH--ARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC--HHHCCEE
Confidence 5899999999987 78999999999999999999999999999999999999999999999999875432 2346899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|+||++.+|+.+||+||+.|....+ +.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999876542 3455666778899999999965 7999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+|||+..++.+++.++.+.++ |+|+|++|||++++.. ||||++|++|++++.|+++++.++..
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999998776655 8999999999999975 99999999999999999999987643
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.8e-52 Score=395.63 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=186.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~ 165 (457)
|++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++..... ...++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 588999999996422469999999999999999999999999999999999999999999999987653221 12456
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
.+||+||++.+++.+||.||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999998766556555555667888999999964 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
||||||+|||+.+++.++++++.++++|.|||++||+++++.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999988776679999999999999975 999999999975
No 33
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-52 Score=400.83 Aligned_cols=230 Identities=25% Similarity=0.315 Sum_probs=202.6
Q ss_pred CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhc
Q psy10858 88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r 164 (457)
++++++|+++.|+.++ +.+|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|++..... ....+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5899999999999821 23999999999999999999999999999999999999999999999997765432 22456
Q ss_pred CcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 165 SKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 165 ~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
+.|.+|||+| +|.|..||++.|.-.....|+++.+ +++.++++.++|+. ++++|.+|||||+||++|||||+.+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 8899999998 6899999999998888877776543 44889999999964 7999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~ 318 (457)
|++||||||||+||+..+.++|+++..++ +.|.|+|++|||+..++. ||||++|++|++++.++.+++.+....+.-.
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr 239 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTR 239 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHH
Confidence 99999999999999999999999966655 458999999999999986 9999999999999999999998764444433
Q ss_pred H
Q psy10858 319 D 319 (457)
Q Consensus 319 ~ 319 (457)
+
T Consensus 240 ~ 240 (252)
T COG1124 240 E 240 (252)
T ss_pred H
Confidence 3
No 34
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-51 Score=397.05 Aligned_cols=231 Identities=25% Similarity=0.412 Sum_probs=203.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+++++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..... ..++.++
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLG 77 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEE
Confidence 5789999999987 789999999999999999999999999999999999999999999999987754332 2235799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+++.+|++||+.+....++.......+.+.++++.+++.. .++.+.+||||||||++|||||+.+|++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999889999999988766655555555667788899999964 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
|||+|||+.+++.++++++.+.+ +|.|||++||+++++..||++++|++|++++.|+++++...+....+.+.|.
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL 233 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence 99999999999999999877654 5899999999999997799999999999999999999877644445666665
No 35
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-51 Score=398.81 Aligned_cols=219 Identities=29% Similarity=0.395 Sum_probs=193.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++..... .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 5899999999987 789999999999999999999999999999999999999999999999987653321 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|+||++.+++.+||.||+.+.....+. ...+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999876544332 33344566778899999964 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||||+|||+.+++.+++++..++++ |+|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999998877654 8999999999999865 999999999999999999988654
No 36
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-51 Score=396.54 Aligned_cols=227 Identities=27% Similarity=0.474 Sum_probs=198.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG 168 (457)
++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++....... .++.+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999987 78999999999999999999999999999999999999999999999998765433222 345799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+++.+||+||+.+....++........++.++++.+++.. .++.+.+|||||||||+||+||+++|++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999988655555555555667788899999964 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
|||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++... ..+++.|
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~ 230 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN---ELVRKVY 230 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC---HHHHHHh
Confidence 9999999999999999988776679999999999999865 999999999999999999887542 3455544
No 37
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-52 Score=399.58 Aligned_cols=230 Identities=24% Similarity=0.362 Sum_probs=204.2
Q ss_pred CceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858 88 EADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA 163 (457)
Q Consensus 88 ~~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~ 163 (457)
++|+++||++.| ++ +.+|+||||+|++||+++|+|+||||||||||+|+|+.+|++|+|.++|.++..... ...
T Consensus 2 ~~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 689999999999 66 899999999999999999999999999999999999999999999999988765442 345
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHh--------hhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHH
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFF--------GMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~--------~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA 234 (457)
|++|||+||.++|.+.+||.+|+..+ ..++|+..++.+.++-++++.+|+. .+-++.++|||||||||+||
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 78999999999999999999999753 2346776666677788899999994 47889999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+++|+|||.|||+++|||.+.+++++.++.. .++|.|||++.|+++.|.. ||||+-|++|+|+++|+++++..
T Consensus 160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~-- 237 (258)
T COG3638 160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD-- 237 (258)
T ss_pred HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH--
Confidence 9999999999999999999999999999996554 5679999999999999964 99999999999999999998643
Q ss_pred CcccHHHHHHh
Q psy10858 313 SMPKLSDVFYK 323 (457)
Q Consensus 313 ~~~~l~~~f~~ 323 (457)
..+.++|..
T Consensus 238 --~~~~~iYg~ 246 (258)
T COG3638 238 --EALDEIYGN 246 (258)
T ss_pred --HHHHHHhcc
Confidence 456666654
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-51 Score=424.15 Aligned_cols=221 Identities=27% Similarity=0.399 Sum_probs=200.9
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.||
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 5899999999987 789999999999999999999999999999999999999999999999988754322 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+|+.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999998876666666666778899999999965 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+|||+.+++.+++.++.+.+ .|+|||++|||++++.. |||+++|++|+++..|+++++.....
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999877655 49999999999999965 99999999999999999999976543
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-51 Score=423.99 Aligned_cols=223 Identities=25% Similarity=0.364 Sum_probs=203.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|+++|+++.... ..++.
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRP 92 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--HHHCC
Confidence 457999999999987 78999999999999999999999999999999999999999999999998875432 23578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|||+||++.+|+.+||.||+.|..+..+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999877667777777888999999999965 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||++||+..+..+++.+..+ ++.|.|+|++|||++++.. |||+++|++|+++..|+++++..+..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999986655 4459999999999999865 99999999999999999999987654
No 40
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-51 Score=396.01 Aligned_cols=220 Identities=25% Similarity=0.362 Sum_probs=195.4
Q ss_pred ceEEEeeEEEeCCCCc----eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---
Q psy10858 89 ADEGKNTEKEELKPSN----VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~----~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~--- 161 (457)
||+++|++++|++ + .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 1 ~i~~~~l~~~~~~--~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGD--TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccC--CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 5889999999986 5 899999999999999999999999999999999999999999999999887543221
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
..++.+||+||++.+++.+|+.||+.+....++.......+.+.++++.+++.. .++++.+|||||||||+||+||+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 235789999999999999999999988665555555555667888999999964 6889999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|++|||||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999998777654 8999999999999865 99999999999999999887653
No 41
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-51 Score=489.29 Aligned_cols=227 Identities=28% Similarity=0.397 Sum_probs=208.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+|+++||+|+|+++++.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....++.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 46899999999998533689999999999999999999999999999999999999999999999988753 22345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||||||++.+++.+||+||+.++++++|.+.++.+++++++++.++|.. .++++++|||||||||+||+||+++|+|||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999998888887777778888999999954 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
|||||+||||.+++.+|++++.++++|+|||+|||+|++++. |||+++|++|++++.|++++++++++.
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 999999999999999999988877779999999999999976 999999999999999999999988763
No 42
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-51 Score=396.17 Aligned_cols=219 Identities=27% Similarity=0.376 Sum_probs=193.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG 168 (457)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... .++.+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999987 78999999999999999999999999999999999999999999999998875433222 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCC----------CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGM----------DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~----------~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
|+||++.+++.+||+||+.+.....+. ......+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999886544322 13344566788899999964 6899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999988776679999999999999965 99999999999999999888754
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-51 Score=391.33 Aligned_cols=210 Identities=32% Similarity=0.444 Sum_probs=187.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+||
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999987 78999999999999999999999999999999999999999999999998775422 23467999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999987655555555555667888999999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.+++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999877655 59999999999999865 9999999999998754
No 44
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2e-51 Score=427.58 Aligned_cols=230 Identities=23% Similarity=0.340 Sum_probs=204.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|+++|+++........++++
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 47999999999998 8999999999999999999999999999999999999999999999999988765545567889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
||++|++.+++.+||+||+.+....+ +.......+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998754321 1112344567888999999965 789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
+|||||||+|||+.++..++++++.+.++|+|||++||+++++.. |||+++|++|++++.|+++++++. +.+.+.|
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~---~~l~~~~ 236 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA---DTLRAAF 236 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc---HHHHHHh
Confidence 999999999999999999999988877679999999999999965 999999999999999999998754 4566666
Q ss_pred H
Q psy10858 322 Y 322 (457)
Q Consensus 322 ~ 322 (457)
.
T Consensus 237 ~ 237 (402)
T PRK09536 237 D 237 (402)
T ss_pred C
Confidence 4
No 45
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.6e-51 Score=423.30 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=198.5
Q ss_pred EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh----cCcEEEEcC
Q psy10858 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA----GSKVGYMPQ 172 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~----r~~IGyvpQ 172 (457)
|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+.... ++.+||+||
T Consensus 1 ~~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 1 KKTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 46777 889999999999999999999999999999999999999999999999998875544333 678999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 173 ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
++.+|+.+||+||+.+.....+.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999999877778877777888999999999965 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 252 GVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
||||.+++.+.+.+..+.+ .|+|||++|||++++.. ||||++|++|+++..|+++++......+.+..
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 228 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEE 228 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHH
Confidence 9999999999999776654 49999999999999865 99999999999999999999987654443433
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2e-51 Score=391.51 Aligned_cols=212 Identities=24% Similarity=0.433 Sum_probs=191.3
Q ss_pred ceEEEeeEEEeCCCCc----eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 89 ADEGKNTEKEELKPSN----VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~----~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
+++++|++++|++ . .+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... ....+
T Consensus 1 ~l~~~~v~~~~~~--~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRD--VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEAR 77 (218)
T ss_pred CeEEEEEEEecCC--CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHH
Confidence 5789999999987 4 799999999999999999999999999999999999999999999999887532 23446
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+.+||+||++.+++.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 789999999999999999999988766666666666777888999999964 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
|||||||+|||+.+++.+++++..+.++|+|||++||+++++.. |||+++|++|++++.|
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999988776679999999999999865 9999999999998654
No 47
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-51 Score=392.66 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=191.4
Q ss_pred CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858 88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~--- 162 (457)
++++++|++++|+++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 5799999999997422 46999999999999999999999999999999999999999999999998876433221
Q ss_pred h-cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 ~-r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
. ++.+||+||++.+++.+|++||+.+.....+...++..+++.++++.+++.. .++.+.+|||||||||+||+||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2 3679999999999999999999988655555555556677888999999965 6889999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs 304 (457)
|++|||||||+|||+.+++.++++++.+++ +|+|||++||+++++..+|++++|++|++++.++
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999887754 5899999999999998778999999999998775
No 48
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.6e-52 Score=385.72 Aligned_cols=215 Identities=25% Similarity=0.340 Sum_probs=201.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~ 165 (457)
||+++||+|.|+++ ..||+||||+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++..... ...|+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 68999999999986 779999999999999999999999999999999999999999999999999875432 34689
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+|||++.|.+++||+||++|..+..|.+++++++++.++++.+||.+ ++..|.+|||||||||+||||++++|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 99999999999999999999999999999999999999999999999965 78899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
|.||||.+|||....+++++++.+...|+||+|+|||.+.+.. -.|++.+.+|+++....
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999998888889999999999999987 57899999999987654
No 49
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.5e-51 Score=393.32 Aligned_cols=222 Identities=29% Similarity=0.390 Sum_probs=196.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~ 166 (457)
+++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... .....++.
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 5789999999987 7899999999999999999999999999999999999999999999999877532 11234568
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++.+++.+||.||+.+... ..+....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999987542 234555556667888999999954 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 9999999999999999999988777679999999999999965 9999999999999999998886543
No 50
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9.9e-51 Score=413.07 Aligned_cols=233 Identities=21% Similarity=0.271 Sum_probs=203.5
Q ss_pred ccCceEEEeeEEEeCCC-----------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 86 EEEADEGKNTEKEELKP-----------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~-----------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
.+++|+++||+++|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 34789999999999631 2579999999999999999999999999999999999999999999999998
Q ss_pred CCCCch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc--CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCCh
Q psy10858 155 PASIYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY--GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSG 225 (457)
Q Consensus 155 ~~~~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~--g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSG 225 (457)
+..... ...+++|+|+||++ .+++.+||.+|+.+....+ ++++++..+++.++++.+++. . +++++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 765432 22457899999998 6888999999998865544 366667777888999999994 3 6899999999
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||||||+|||||+.+|++|||||||+|||+.++.+++++++.+++ .|.|||++|||++++.. ||||++|.+|+|++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999877765 49999999999999975 9999999999999999
Q ss_pred ChhhhhhcCCcccHH
Q psy10858 304 SPDGFKSKYSMPKLS 318 (457)
Q Consensus 304 s~~~l~~~~~~~~l~ 318 (457)
+++++.+....+...
T Consensus 245 ~~~~i~~~~~~py~~ 259 (331)
T PRK15079 245 TYDEVYHNPLHPYTK 259 (331)
T ss_pred CHHHHHcCCCCHHHH
Confidence 999998765444333
No 51
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-51 Score=404.67 Aligned_cols=224 Identities=24% Similarity=0.302 Sum_probs=199.9
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
++++++|++++|++. .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........+++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999742 2469999999999999999999999999999999999999999999999998764433445678
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++ .+++.+||.||+.+.....+.+.++..+++.++++.++|.. .++.+.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998 46777899999998766667777777778889999999965 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||||+|||+.+++.++++++.+.++ |+|||++||+++++..|||+++|++|+++..|+++++...
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999998777654 9999999999999977999999999999999999887653
No 52
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.9e-51 Score=389.50 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=184.9
Q ss_pred eEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh----hh
Q psy10858 90 DEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK----TA 163 (457)
Q Consensus 90 Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~----~~ 163 (457)
|+++|++++|++.+ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997522 4799999999999999999999999999999999999999999999999877543211 13
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
++.+||+||++.+++.+||+||+.+.....+.......+++.++++.+++.. .++.+.+|||||||||+|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 4679999999999999999999998766666554455567888999999964 688999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
+|||||||+|||+.+++.++++++.+++ .|+|||++||+++++..||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999887766 59999999999999888999999999974
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-50 Score=404.49 Aligned_cols=222 Identities=24% Similarity=0.358 Sum_probs=196.1
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--hhhh
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--~~~~ 163 (457)
+|+++||+++|++.. +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 489999999997421 36999999999999999999999999999999999999999999999998875422 1245
Q ss_pred cCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--C-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 164 GSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--N-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 164 r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
++++||+||++. .+..+||+||+.+.....+.+.++..+++.++++.++|. . .++++.+||||||||++||+||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 678999999973 233579999999876666777777778889999999995 3 689999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .||||++|++|++++.|+++++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999998877654 999999999999986 599999999999999999998765
No 54
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.9e-51 Score=388.89 Aligned_cols=216 Identities=27% Similarity=0.415 Sum_probs=188.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG 168 (457)
|+++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....... .++.+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999987 78999999999999999999999999999999999999999999999998775433222 356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHc-CCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l-~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|+||++.+++.+|++||+.+....++ .....+++.++++.+ ++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999988755443 223344566677777 4643 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999988776678999999999999865 9999999999999999887764
No 55
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-51 Score=390.49 Aligned_cols=227 Identities=21% Similarity=0.308 Sum_probs=206.4
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----eEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-----GEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-----G~I~i~G~~~~~~--~ 159 (457)
.++++++||++.||+ +.||+|||++|+++++++|+||||||||||||++..+..... |+|.++|+++... +
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 468999999999998 999999999999999999999999999999999999987654 9999999998654 4
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...+|++||+|||.|+.|| +|++||+.|+.+++|+..++..+.+++.++...|- .+++.+..|||||||||+||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 5568999999999999998 89999999999999987788888888888887772 25788899999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|+|||||||||+|||.+..+|-+++..++ +.-|||||||+|..|.+ +|+.++|..|++++.|+.+++++++.
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 99999999999999999999999999999998876 57999999999999976 89999999999999999999998765
Q ss_pred cccH
Q psy10858 314 MPKL 317 (457)
Q Consensus 314 ~~~l 317 (457)
....
T Consensus 241 ~~~T 244 (253)
T COG1117 241 HKRT 244 (253)
T ss_pred HHHH
Confidence 4333
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.6e-51 Score=386.25 Aligned_cols=210 Identities=28% Similarity=0.400 Sum_probs=188.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999999988754322 2367999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|++||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999988766556555666677888899999964 789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999877765 48999999999999875 9999999999998765
No 57
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.8e-51 Score=387.96 Aligned_cols=217 Identities=34% Similarity=0.536 Sum_probs=193.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++++||
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753257999999999999999999999999999999999999999999999998775422 344678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
++|++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999998776666665555667888999999954 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 160 P~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 160 PTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999887755 5999999999999965 999999999999999988764
No 58
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-51 Score=403.29 Aligned_cols=224 Identities=25% Similarity=0.314 Sum_probs=199.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++||+++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 35899999999997533569999999999999999999999999999999999999999999999998765443345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++. ++..+||.||+.+.....+.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 6777899999988766666666666777889999999964 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.+.++ |+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999998777655 899999999999997799999999999999999988764
No 59
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-50 Score=402.01 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=194.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++|++++|+.. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++++
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 479999999999631 6799999999999999999999999999999999999999999999999887644434456789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||+||++. .+..+||.||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999973 4456899999987655556666666677888999999954 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l 308 (457)
|||||+|||+.++..++++++.++++|+|||++||+++++. .|||+++|++|++++.|+++++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999998877667999999999999985 5999999999999999998754
No 60
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.8e-50 Score=392.91 Aligned_cols=221 Identities=26% Similarity=0.341 Sum_probs=195.7
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--------h
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--------H 160 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--------~ 160 (457)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7999999999987 78999999999999999999999999999999999999999999999998764321 1
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
...++.+||+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.. .++++.+|||||||||+||+||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 2345689999999999999999999987533 234444555667788899999965 68899999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+|++|||||||+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988777779999999999999965 999999999999999999988654
No 61
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.2e-51 Score=390.78 Aligned_cols=215 Identities=23% Similarity=0.330 Sum_probs=188.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCccCCCCc--hhh
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-----NISQGEIWVLGGHPASIY--HKT 162 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-----~p~sG~I~i~G~~~~~~~--~~~ 162 (457)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.... ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999987 78999999999999999999999999999999999999 999999999998765432 233
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH-HHHHHHHHHHHhHcCCCC-CCCC--CCCCChhHHHHHHHHHHhh
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPN-LERP--VKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~~~~ll~~l~L~~-~~~~--~~~LSGGqkQRlsLA~ALl 238 (457)
.++.+||+||++.++ .+||+||+.+....++... ....+++.++++.+++.. .+++ +.+|||||||||+||+||+
T Consensus 79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 467899999999988 7999999988665555433 234567788899999964 4555 5999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
.+|++|||||||+|||+.+++.++++++.++++ +|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999998887666 999999999999865 999999999999999987653
No 62
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=396.87 Aligned_cols=230 Identities=26% Similarity=0.380 Sum_probs=208.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~ 166 (457)
+++++++++|+||+ ..||+||||+|++||++||+|||||||||++++|+|+++|++|+|.++|++++..+ .+..+..
T Consensus 3 ~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 57899999999999 99999999999999999999999999999999999999999999999999997654 3445678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhc-------C-----CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIY-------G-----MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-------g-----~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsL 233 (457)
|+--||...+|++|||.||+......+ + ...++..+++.++++.++|.. +++++++||+||||||.|
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 899999999999999999998754321 1 134667888899999999965 899999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|+||||.+||.|....++.++++.+++ .|+||+++.|||+.+.. ||||++|+.|+++++|+|+++.++
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 9999999999999999999999999999999888877 47999999999999965 999999999999999999999875
Q ss_pred CCcccHHHHHH
Q psy10858 312 YSMPKLSDVFY 322 (457)
Q Consensus 312 ~~~~~l~~~f~ 322 (457)
+.+.++|+
T Consensus 241 ---p~VieAYL 248 (250)
T COG0411 241 ---PRVIEAYL 248 (250)
T ss_pred ---HHhHHHhc
Confidence 66777776
No 63
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-50 Score=392.30 Aligned_cols=221 Identities=27% Similarity=0.414 Sum_probs=196.0
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.+||
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999752 469999999999999999999999999999999999999999999999987754333344678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
+||++.+++.+||+||+.++....+.+.....+++.++++.+++. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998876665655555566788899999996 35889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+|||+.+++.++++++.++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999998877654 8999999999999865 999999999999999999888654
No 64
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=420.87 Aligned_cols=234 Identities=22% Similarity=0.335 Sum_probs=201.4
Q ss_pred CceEEEeeEEEeCCCC----------------------ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858 88 EADEGKNTEKEELKPS----------------------NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ 145 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~----------------------~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s 145 (457)
.+|+++||+|.||... ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3577777777777621 248999999999999999999999999999999999999999
Q ss_pred eEEEEcCccCCCCchhh----hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCC
Q psy10858 146 GEIWVLGGHPASIYHKT----AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220 (457)
Q Consensus 146 G~I~i~G~~~~~~~~~~----~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~ 220 (457)
|+|+++|.++...+... .++++||+||++.+|+.+||+||+.+.....+.+.++..+++.++++.++|.. .++++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 99999999876433221 24679999999999999999999998877667766666677889999999965 78999
Q ss_pred CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.+..+++ .|+|||++||+++++.. ||++++|++|+
T Consensus 163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999777654 58999999999999965 99999999999
Q ss_pred EEEecChhhhhhcCCcccHHHHH
Q psy10858 299 IIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 299 I~~~gs~~~l~~~~~~~~l~~~f 321 (457)
++..|+++++........+.+.+
T Consensus 243 i~~~g~~~~l~~~~~~~~v~~~~ 265 (400)
T PRK10070 243 VVQVGTPDEILNNPANDYVRTFF 265 (400)
T ss_pred EEecCCHHHHHhCcccHHHHHHH
Confidence 99999999987754333343333
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-50 Score=391.10 Aligned_cols=219 Identities=26% Similarity=0.389 Sum_probs=189.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhhhcCc
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKTAGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~~r~~ 166 (457)
++++|++++|+++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ....++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999742 57999999999999999999999999999999999999999999999998875432 2234578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhh--------hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGM--------IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~--------l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++|+||++.+++.+||+||+.+... +.+.......+++.++++.+++.. .++++.+|||||||||+||+||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999976432 112222334456778899999964 6889999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~ 309 (457)
+++|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++. .||++++|++|+++..|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999999999877654 4899999999999997 59999999999999999998864
No 66
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.5e-50 Score=397.80 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=196.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~ 163 (457)
+++|+++|++++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 358999999999987 789999999999999999999999999999999999999999999999987754321 123
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++.+||+||++.+++.+||.||+.+..... +.+.....+++.++++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 567999999999999999999998754332 2344445566778899999965 78899999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999998776554 8999999999999865 999999999999999999998764
No 67
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.1e-50 Score=391.25 Aligned_cols=219 Identities=22% Similarity=0.339 Sum_probs=194.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--chh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~~ 161 (457)
|++++|++++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|.++... ...
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 5889999999987 78999999999999999999999999999999999999998 99999999877531 223
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHHH
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
..++.+||+||++.+++ +|++||+.+.....+ .+..+..+++..+++.+++. . .++++.+|||||||||+|||
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 34678999999999988 999999988655554 34455566788889999995 3 68899999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+.+|++|||||||+|||+.++..++++++.+++ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999887765 4899999999999865 999999999999999999988654
No 68
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=391.40 Aligned_cols=228 Identities=25% Similarity=0.380 Sum_probs=198.9
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~I 167 (457)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 7999999999987 789999999999999999999999999999999999999999999999988754332 2235689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||+||++.+++.+||.||+.+..... +.+..+...++.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998765443 2344445567788899999964 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
|||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|++++.|+++++... ..+.+.|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~---~~~~~~~ 234 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD---EHVKRVY 234 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC---hhHhHhh
Confidence 999999999999999999988777779999999999998865 999999999999999999987643 3345555
No 69
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.3e-50 Score=384.96 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=185.6
Q ss_pred ceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858 89 ADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r 164 (457)
||+++|++++|+ + +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..... ...+
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 588999999994 4 689999999999999999999999999999999999999999999999988754321 1245
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+.+||+||++.+++.+|+.||+.+....++.......+++.++++.+++.. .++.+.+|||||||||+|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 689999999999999999999988766556555555677888999999964 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
|||||||+|||+.++..++++++.++++|+|||++||+++++.. ||++++|++|+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999988876679999999999999975 99999999985
No 70
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-50 Score=389.40 Aligned_cols=228 Identities=24% Similarity=0.329 Sum_probs=196.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~ 166 (457)
++|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...... ..++.
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 36899999999987 7899999999999999999999999999999999999999999999999876543322 23457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh--------cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI--------YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--------~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
+||+||++.+++.+||+||+.+.... ++...+....++.++++.+++.. .++.+++|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999999999999999875431 11223344567788999999964 6889999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~ 316 (457)
+++|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++.+. +.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~---~~ 234 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD---PR 234 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhcC---HH
Confidence 999999999999999999999999999887755 7999999999999975 999999999999999999887642 33
Q ss_pred HHHHH
Q psy10858 317 LSDVF 321 (457)
Q Consensus 317 l~~~f 321 (457)
+.+.|
T Consensus 235 ~~~~~ 239 (242)
T TIGR03411 235 VIEVY 239 (242)
T ss_pred HHHHh
Confidence 45554
No 71
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-50 Score=383.45 Aligned_cols=208 Identities=28% Similarity=0.505 Sum_probs=187.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999987 789999999999999999999999999999999999999999999999987642 23568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999988766666655556677888999999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999988776678999999999999865 9999999999998653
No 72
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-50 Score=385.72 Aligned_cols=211 Identities=29% Similarity=0.394 Sum_probs=187.3
Q ss_pred eEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 90 DEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 90 Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997521 469999999999999999999999999999999999999999999999987642 34679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+||++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+||||||||++|||||+++|++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999988766566655555667888999999964 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecCh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSP 305 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~ 305 (457)
||||+|||+.+++.++++++.+. +.|+|||++||+++++.. ||++++|+ +|++++.++.
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999987764 458999999999999864 99999999 7999988764
No 73
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.1e-50 Score=386.29 Aligned_cols=211 Identities=23% Similarity=0.308 Sum_probs=187.7
Q ss_pred ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858 89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r 164 (457)
||+++|++++| ++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 58899999999 55 789999999999999999999999999999999999999999999999987754221 1245
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+.++|+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++.+.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 789999999999889999999988766556655555667788899999954 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~ 301 (457)
|||||||+|||+.+++.+++++..++++|.|||++||+++++.. |||+++|++|+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999988776678999999999999975 89999999999854
No 74
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-50 Score=399.57 Aligned_cols=221 Identities=23% Similarity=0.301 Sum_probs=196.7
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCcE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~I 167 (457)
|++++|++++|++. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ....++.+
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 58899999999531 56999999999999999999999999999999999999999999999998875432 23446789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||+||++. .+..+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999985 3666899999988766666666666777888999999964 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.++..+++.++.++++|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999998877777999999999999997799999999999999999988765
No 75
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-50 Score=401.53 Aligned_cols=221 Identities=26% Similarity=0.337 Sum_probs=196.3
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----Cchh
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----IYHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~~~~ 161 (457)
||+++|++++|+... +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999997421 259999999999999999999999999999999999999999999999988742 1223
Q ss_pred hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
..++.+||+||++ .++. .||.||+.|....++.+..+..+++.++++.+++. . .++.+.+||||||||++||+||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 4567899999987 5665 69999999877666777777778889999999994 3 6899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++. .||||++|++|++++.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999998887767999999999999985 599999999999999999999864
No 76
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-50 Score=392.47 Aligned_cols=229 Identities=21% Similarity=0.294 Sum_probs=197.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~ 159 (457)
.++|+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|+++|.++... .
T Consensus 10 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 468999999999987 7899999999999999999999999999999999999985 899999999876432 1
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA 234 (457)
....++.+||+||++.+++ +|++||+.+....++.+.+...+++.++++.+++. . .++++.+|||||||||+||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 2234578999999999887 89999998876555655555556678888888872 2 5789999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.++..++++++.+.+ |+|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 245 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999999999999999999999999999999887754 7999999999999865 99999999999999999999876544
Q ss_pred cccHHH
Q psy10858 314 MPKLSD 319 (457)
Q Consensus 314 ~~~l~~ 319 (457)
.....+
T Consensus 246 ~~~~~~ 251 (258)
T PRK14268 246 EKSTED 251 (258)
T ss_pred CHHHHH
Confidence 344443
No 77
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-50 Score=401.87 Aligned_cols=221 Identities=26% Similarity=0.388 Sum_probs=194.8
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----Cchh
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----IYHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~~~~ 161 (457)
.++++|++++|++.. ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 469999999999999999999999999999999999999999999999998742 1223
Q ss_pred hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
..++++||+||++ .++ ..||.||+.+.....+.+..+..+++.++++.++|. . .++++.+|||||||||+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3457899999997 455 479999999876666777777777888999999995 4 6899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.++..++++++.+.+ .|.|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999877755 49999999999999864 99999999999999999988764
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-50 Score=391.69 Aligned_cols=219 Identities=26% Similarity=0.346 Sum_probs=190.0
Q ss_pred ceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858 89 ADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r 164 (457)
|++++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ...+
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 578999999998 5 779999999999999999999999999999999999999999999999987654221 2245
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhh--------hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGM--------IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~--------l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
+.+||+||++.+++.+||+||+.+... +.+.......+++.++++.+++.. .++++.+|||||||||+|||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999976321 112222334566788899999954 68899999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~ 309 (457)
||+.+|++|||||||+|||+.+++.++++++.+++ .|+|||++||+++++. .||++++|++|+++..|+++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999877655 4899999999999986 49999999999999999998863
No 79
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-50 Score=384.13 Aligned_cols=212 Identities=22% Similarity=0.310 Sum_probs=184.7
Q ss_pred ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---h
Q psy10858 89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---A 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---~ 163 (457)
+|+++|++++|++.. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 478999999997421 46999999999999999999999999999999999999999999999998875433211 1
Q ss_pred -cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 164 -GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 164 -r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+++++|+||++.+++.+|++||+.+.....+....+..+++.++++.+++.. .++.+.+|||||||||+|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 2579999999999999999999988655444444444566788999999964 78999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRII 300 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~ 300 (457)
++|||||||+|||+.+++.+++++..+++ .|+|||++||+++++..+|++++|++|+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999877765 489999999999999779999999999975
No 80
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-51 Score=403.26 Aligned_cols=236 Identities=25% Similarity=0.329 Sum_probs=214.5
Q ss_pred CceEEEeeEEEeCCC----------------------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858 88 EADEGKNTEKEELKP----------------------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ 145 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~----------------------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s 145 (457)
..|+++|++|-||++ -...++|+||+|++|||+.|+|-||||||||+++|.++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 468899999999863 1347999999999999999999999999999999999999999
Q ss_pred eEEEEcCccCCCCchh----hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCC
Q psy10858 146 GEIWVLGGHPASIYHK----TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220 (457)
Q Consensus 146 G~I~i~G~~~~~~~~~----~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~ 220 (457)
|+|+++|+++...+.. ..++++++|||++.|+|+.||.||..|+..+.|+++++.++++.++++.+||.. .+++|
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999998766543 346789999999999999999999999999999999999999999999999965 79999
Q ss_pred CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
++|||||||||.|||||+.+|+|||+|||+|+|||--|.++-+. ++..++-++||+++|||++||.+ .|||++|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999988 55555669999999999999965 89999999999
Q ss_pred EEEecChhhhhhcCCcccHHHHHHh
Q psy10858 299 IIAQDSPDGFKSKYSMPKLSDVFYK 323 (457)
Q Consensus 299 I~~~gs~~~l~~~~~~~~l~~~f~~ 323 (457)
|+..|+|+++..++..+++.+.+..
T Consensus 243 ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 243 IVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred EEEeCCHHHHHcCccHHHHHHHHhc
Confidence 9999999999998876666665543
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-50 Score=382.36 Aligned_cols=206 Identities=30% Similarity=0.461 Sum_probs=184.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999987 7899999999999999999999999999999999999999999999999876532 234568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+||+||+.++...++.. .+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999999999999998876554432 345677889999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999988776679999999999999965 9999999999998754
No 82
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-50 Score=382.51 Aligned_cols=209 Identities=28% Similarity=0.489 Sum_probs=187.5
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ ..+++|+||+|++| +++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999987 78999999999999 99999999999999999999999999999999998775433 344678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+||.||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999998766666555555667888999999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.+++ +.|||++||+++++.. |||+++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999888765 5999999999999965 9999999999998754
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-50 Score=404.76 Aligned_cols=223 Identities=25% Similarity=0.323 Sum_probs=195.8
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--------
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-------- 157 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~-------- 157 (457)
+|+++|++++|++.. ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999997521 259999999999999999999999999999999999999999999999865421
Q ss_pred ----------------CchhhhcCcEEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCC
Q psy10858 158 ----------------IYHKTAGSKVGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LER 218 (457)
Q Consensus 158 ----------------~~~~~~r~~IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~ 218 (457)
......+++|||+||++ ..+...||+||+.|.....+.+.++..+++.++++.++|. . .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 01233467899999986 2334579999999877667788777788899999999995 4 789
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCC
Q psy10858 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKG 297 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~G 297 (457)
++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++. .||||++|++|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998887777999999999999985 59999999999
Q ss_pred eEEEecChhhhhhc
Q psy10858 298 RIIAQDSPDGFKSK 311 (457)
Q Consensus 298 kI~~~gs~~~l~~~ 311 (457)
++++.|+++++...
T Consensus 242 ~i~~~g~~~~~~~~ 255 (305)
T PRK13651 242 KIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCHHHHhcC
Confidence 99999999988653
No 84
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-50 Score=399.83 Aligned_cols=221 Identities=28% Similarity=0.380 Sum_probs=194.4
Q ss_pred ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858 89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~ 161 (457)
+|+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58999999999742 14699999999999999999999999999999999999999999999999877431 123
Q ss_pred hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
..++.+||+||++ .++ .+||.||+.+....++...++..+++.++++.+++. . .++++.+|||||||||+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3456899999997 355 589999998765555666666677788999999995 4 6899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999988877679999999999999865 99999999999999999998764
No 85
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-50 Score=397.85 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=194.6
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh----hcCc
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----AGSK 166 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~----~r~~ 166 (457)
.++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... .+++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56799999998 88999999999999999999999999999999999999999999999998775432211 2457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+++.+||.||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999988765555555555567788999999964 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||||+|||+.+++.+++++..+.+ .|+|||++||+++++.. ||++++|++|++++.|+++++.+..
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999877654 48999999999999865 9999999999999999999987653
No 86
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1e-49 Score=390.10 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=197.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-------- 158 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-------- 158 (457)
+.+|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999987 7899999999999999999999999999999999999999999999999876421
Q ss_pred -----chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHH
Q psy10858 159 -----YHKTAGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRR 230 (457)
Q Consensus 159 -----~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQR 230 (457)
.....++++||+||++.+++.+||+||+.+.. ...+.......+++.++++.+++.. .++++.+||||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 11234678999999999999999999998643 2344555556677888999999965 378899999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
++|||||+.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999999999999999988877779999999999999975 9999999999999999998876
Q ss_pred hc
Q psy10858 310 SK 311 (457)
Q Consensus 310 ~~ 311 (457)
..
T Consensus 241 ~~ 242 (257)
T PRK10619 241 GN 242 (257)
T ss_pred hC
Confidence 54
No 87
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-50 Score=381.94 Aligned_cols=208 Identities=29% Similarity=0.419 Sum_probs=181.8
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv 170 (457)
+++|++++|++.++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975335799999999999999999999999999999999999999999999999877543333456789999
Q ss_pred cCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 171 PQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 171 pQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
||++. .++.+|++||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99985 3667899999987655555555555567788899999954 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
||+|||+.+++.+++.++.++++|+|||++||+++++.. ||++++|++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999988776679999999999999976 99999999985
No 88
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=404.65 Aligned_cols=233 Identities=18% Similarity=0.256 Sum_probs=202.7
Q ss_pred cCceEEEeeEEEeCCC--------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC
Q psy10858 87 EEADEGKNTEKEELKP--------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~--------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~ 158 (457)
+++|+++||++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 3689999999999631 25799999999999999999999999999999999999999999999999987654
Q ss_pred ch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHH
Q psy10858 159 YH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRR 230 (457)
Q Consensus 159 ~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQR 230 (457)
.. ...+++|||+||++ .+.+.+||.+++....... ++...+..+++.++++.++|. . +++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 32 23467899999998 6889999999997655443 456666677889999999995 3 689999999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|+|||||+.+|++||+||||+|||+.++..+++++..+++ .|.|||++|||++++.. ||||++|++|+|++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999777655 49999999999999975 999999999999999999999
Q ss_pred hhcCCcccHHH
Q psy10858 309 KSKYSMPKLSD 319 (457)
Q Consensus 309 ~~~~~~~~l~~ 319 (457)
.+....+....
T Consensus 243 ~~~p~hpyt~~ 253 (327)
T PRK11308 243 FNNPRHPYTQA 253 (327)
T ss_pred hcCCCCHHHHH
Confidence 87654444333
No 89
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-50 Score=396.09 Aligned_cols=222 Identities=25% Similarity=0.354 Sum_probs=195.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+++++|++++|++. ..+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++........++++
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 368999999999631 5699999999999999999999999999999999999999999999999887543333456789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||+||++. .+...||.||+.+.....+.+.+...+++.++++.+++.. .++.+.+||||||||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999974 3346799999987665556666666677889999999954 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.+++.++++++.+.++ |+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999998777654 899999999999985 599999999999999999998865
No 90
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-50 Score=392.41 Aligned_cols=220 Identities=22% Similarity=0.315 Sum_probs=193.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+|
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 6899999999987 78999999999999999999999999999999999999999999999998765433333456899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh------cCC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL------HKP 241 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl------~~P 241 (457)
|+||++.+++.+||+||+.+.....+...+...+++.++++.+++.. .++.+.+|||||||||+||+||+ .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999998888999999987644333333344456778899999954 68999999999999999999999 599
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
++|||||||+|||+.+++.++++++.+. ++|+|||++||+++++. .||++++|++|+++..|+++++.+
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999999999999999999987766 67999999999999996 599999999999999999988764
No 91
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-50 Score=394.11 Aligned_cols=225 Identities=20% Similarity=0.276 Sum_probs=198.5
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
+.++++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 35689999999999753245999999999999999999999999999999999999999999999998875444444567
Q ss_pred cEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 166 KVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 166 ~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
.+||+||++. +++..|+.+|+.+.....+.+.+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999985 6777899999987655555555556667888999999954 7889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++.+
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999877655 4899999999999987799999999999999999988765
No 92
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.1e-50 Score=383.31 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=188.0
Q ss_pred CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858 88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~--- 162 (457)
++|+++|++++|++.. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 5899999999997522 25999999999999999999999999999999999999999999999998775433221
Q ss_pred -hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 -AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 -~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.++.+||+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++++.+||||||||++||+||+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 23579999999999999999999987654445555556677888999999964 6889999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~ 302 (457)
|++|||||||+|||+.+++.++++++.+++ .|.|||++||++++++.||++++|++|++++.
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999877654 48999999999999877999999999999753
No 93
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-50 Score=389.44 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=195.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~ 166 (457)
.+++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+..
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 4 PLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred ceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 57999999999987 7899999999999999999999999999999999999999999999999887543322 23456
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh----------cCC-----CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI----------YGM-----DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR 230 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l----------~g~-----~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR 230 (457)
++|+||++.+++.+||.||+.+.... ++. ...+...++.++++.+++.. .++++.+||||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 161 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHH
Confidence 99999999999999999999875321 110 11123345677888999954 789999999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|+||+||+++|++|||||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 99999999999999999999999999999999998777665 8999999999999965 999999999999999999887
Q ss_pred hhcCCcccHHHHH
Q psy10858 309 KSKYSMPKLSDVF 321 (457)
Q Consensus 309 ~~~~~~~~l~~~f 321 (457)
.+. ..+.+.|
T Consensus 242 ~~~---~~~~~~~ 251 (255)
T PRK11300 242 RNN---PDVIKAY 251 (255)
T ss_pred hhC---hHHHHHH
Confidence 643 3345544
No 94
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-50 Score=386.88 Aligned_cols=227 Identities=22% Similarity=0.374 Sum_probs=193.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~ 166 (457)
++++++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 47999999999987 7899999999999999999999999999999999999999999999999887543322 24567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHc-CCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l-~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||++|++.+++.+||.||+.+..... ......+++.++++.+ ++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999899999998753222 2223344556667776 4643 57889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
||||||+|||+.+++.++++++.+.++|+|||++||+++++.. |||+++|++|+++..|+++++... ..+.+.|
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~ 234 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN---EAVRSAY 234 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC---HHHHHHh
Confidence 9999999999999999999988777779999999999999864 999999999999999999988642 3344544
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-50 Score=397.28 Aligned_cols=223 Identities=22% Similarity=0.297 Sum_probs=196.3
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--Cchhhhc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAG 164 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r 164 (457)
+++|+++|++++|+++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ......+
T Consensus 3 ~~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 3 DYILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred CceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 3589999999999621 679999999999999999999999999999999999999999999999988742 1223456
Q ss_pred CcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 165 SKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 165 ~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+.+||+||++. .+...||+||+.+....++.+.....+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999973 2345799999988665566666666677889999999964 789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999998776654 999999999999996 599999999999999999998765
No 96
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-50 Score=395.12 Aligned_cols=221 Identities=21% Similarity=0.274 Sum_probs=193.9
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--CchhhhcCc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r~~ 166 (457)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ......++.
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 5899999999987 789999999999999999999999999999999999999999999999988742 112234578
Q ss_pred EEEEcCCCCC-CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAM-FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L-~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++.+ +...|+.+|+.+.....+....+..+++.++++.+++.. .++++.+||||||||++||+||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999863 345689999988665556655556667788999999954 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||||+|||+.++..++++++.+.++|+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999988776679999999999999965 999999999999999999887653
No 97
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-50 Score=395.21 Aligned_cols=224 Identities=23% Similarity=0.305 Sum_probs=197.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
+++++++|++++|+++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........+++
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999996323679999999999999999999999999999999999999999999999988754333345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++. .++.+||+||+.+.....+.+.++...++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 6777899999987655445555556667888999999954 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.++++ ++|||++||+++++..||++++|++|+++..|+++++..
T Consensus 165 lLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999998877655 599999999999987799999999999999999888754
No 98
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6e-50 Score=379.95 Aligned_cols=209 Identities=25% Similarity=0.326 Sum_probs=185.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcCc
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~~ 166 (457)
++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999642 579999999999999999999999999999999999999999999999987754321 234578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
++|+||++.+++.+|++||+.+....++...+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999988766555555556667888999999964 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
|||||+|||+.+++.+++.++.+.++|+|||++||+++++.. ||++++|++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999988876679999999999999975 999999999974
No 99
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-50 Score=390.92 Aligned_cols=228 Identities=20% Similarity=0.317 Sum_probs=196.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.+|
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 6899999999987 78999999999999999999999999999999999999999999999998765433334456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELAMFGELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|+||++.+++.+|+.||+.+... .++.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999888999999987521 123222334556778899999954 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++.+. ..++++|
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~ 235 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP---GLLRTVF 235 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH---HHHHHHh
Confidence 99999999999999999999988776679999999999999865 999999999999999999887642 3445555
No 100
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=386.96 Aligned_cols=229 Identities=21% Similarity=0.317 Sum_probs=195.3
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI-- 158 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~-- 158 (457)
..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|+++|+++...
T Consensus 3 ~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 3 SPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 3578999999999987 789999999999999999999999999999999999974 6899999999877431
Q ss_pred chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHH
Q psy10858 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRls 232 (457)
.....++.+||+||++.+|+ .||+||+.+.....+. ..+...+++.++++.+++.. .++.+.+|||||||||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 22234678999999999887 5999999886554444 23344567778888888732 47889999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+.+|++|||||||+|||+.++..++++++.+. +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999988775 47999999999999865 999999999999999999988765
Q ss_pred CCcccHH
Q psy10858 312 YSMPKLS 318 (457)
Q Consensus 312 ~~~~~l~ 318 (457)
.....+.
T Consensus 239 ~~~~~~~ 245 (253)
T PRK14242 239 PREKQTE 245 (253)
T ss_pred CCchHHH
Confidence 4333333
No 101
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=386.10 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=193.7
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC------Cchhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------IYHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~------~~~~~ 162 (457)
+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 6899999999987 789999999999999999999999999999999999999999999999987521 11123
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.++.++|+||++.+++.+||.||+.+ ....++....+...++.++++.+++.. .++.+.+|||||||||+|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999975 333445555555667888899999964 6899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999988877679999999999999964 9999999999999999988764
No 102
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=386.71 Aligned_cols=220 Identities=23% Similarity=0.302 Sum_probs=193.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCchhhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~~~~~ 163 (457)
+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 6899999999987 7899999999999999999999999999999999999974 79999999988754433445
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHHH
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~A 236 (457)
++.+||+||++.+++.+||.||+.+.....+. +..+..+++.++++.+++. ..++.+.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 67899999999988899999999876544332 3344556778889999984 2588999999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+.+|++|||||||+|||+.+++.++++++.+.+ |+|||++||+++++. .||++++|++|++++.|+++++.+.
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 9999999999999999999999999999887754 899999999999986 5999999999999999999988754
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-50 Score=397.46 Aligned_cols=222 Identities=21% Similarity=0.340 Sum_probs=195.0
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~ 161 (457)
+++++|++++|+++. +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 3699999999999999999999999999999999999999999999999887432 123
Q ss_pred hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
..+++|||+||++ .+++ .||.||+.+.....+.+.++..+++.++++.++|. . .++.+.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 4567899999987 4555 59999998876656677777777888999999995 4 6889999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+.+|++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++...
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999877654 5999999999999985 5999999999999999999887653
No 104
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-50 Score=396.71 Aligned_cols=224 Identities=26% Similarity=0.290 Sum_probs=199.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCccCCCCchhhh
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---GEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---G~I~i~G~~~~~~~~~~~ 163 (457)
+.+|+++|++++|++..+.+++||||+|++||++||+||||||||||+++|+|+++|++ |+|+++|.++........
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 46899999999997532469999999999999999999999999999999999999988 899999998764433345
Q ss_pred cCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 164 GSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 164 r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++++||+||++. +++.+||.||+.+.....+.+.++..+++.++++.+++.. .++++.+||||||||++||+||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 678999999984 6778999999987655566666667778888999999964 78999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999877655 4999999999999997799999999999999999988764
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.2e-50 Score=379.59 Aligned_cols=208 Identities=28% Similarity=0.388 Sum_probs=184.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--CchhhhcCcE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAGSKV 167 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r~~I 167 (457)
++++|++++|++ +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.. ......++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999999987642 1223346789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+|+||++.+++.+|+.||+.+... .++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999987643 335555555667788899999964 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
|||||+|||+.+++.++++++.+++.|+|||++||+++++.. ||++++|++|++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999988877779999999999999965 999999999974
No 106
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-49 Score=402.88 Aligned_cols=233 Identities=19% Similarity=0.249 Sum_probs=200.4
Q ss_pred ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCccCCCCchhh
Q psy10858 89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~----p~sG~I~i~G~~~~~~~~~~ 162 (457)
+|+++||++.|+... ..||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999997632 369999999999999999999999999999999999997 48999999999876543222
Q ss_pred ----hcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHHH
Q psy10858 163 ----AGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRRL 231 (457)
Q Consensus 163 ----~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQRl 231 (457)
.++.|||+||++ ++++.+|+.+++....... +...++..+++.++++.++|.. +++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 235799999998 5888999999887655443 4556666778889999999953 5889999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~ 309 (457)
+|||||+.+|++|||||||+|||+.++..++++++.+++ .|.|||++|||++++. .||||++|.+|+|++.|++++++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999877765 5999999999999996 59999999999999999999998
Q ss_pred hcCCcccHHHHH
Q psy10858 310 SKYSMPKLSDVF 321 (457)
Q Consensus 310 ~~~~~~~l~~~f 321 (457)
+....++.....
T Consensus 243 ~~p~hpyt~~ll 254 (326)
T PRK11022 243 RAPRHPYTQALL 254 (326)
T ss_pred hCCCChHHHHHH
Confidence 765555544443
No 107
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.5e-49 Score=410.99 Aligned_cols=216 Identities=27% Similarity=0.404 Sum_probs=190.7
Q ss_pred eEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc----cCCCCchh---h-hcCc
Q psy10858 95 TEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG----HPASIYHK---T-AGSK 166 (457)
Q Consensus 95 lsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~----~~~~~~~~---~-~r~~ 166 (457)
+.++||. ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+ ++...+.. . .+++
T Consensus 30 ~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 3455555 78999999999999999999999999999999999999999999999996 33322211 1 2367
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+++.+||+||+.+.....+.++.+..+++.++++.++|.. .++++.+|||||||||+|||||+++|+|||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998877777777777778889999999964 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||||+||||.+++.+++.+..+.+ .|+|||++|||++++.. ||||++|++|++++.|+++++..+.
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 9999999999999999999776655 49999999999999865 9999999999999999999997653
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=402.85 Aligned_cols=224 Identities=27% Similarity=0.314 Sum_probs=196.7
Q ss_pred cCceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-----
Q psy10858 87 EEADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----- 158 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----- 158 (457)
.++|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4689999999999742 13699999999999999999999999999999999999999999999999876432
Q ss_pred -----------chhhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCC
Q psy10858 159 -----------YHKTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYL 223 (457)
Q Consensus 159 -----------~~~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~L 223 (457)
.....+++||||||++ .+++ .||+||+.+.....+.+.++..+++.++++.++++ . .++.+.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 1234567899999997 4665 59999998865555666666677888899999995 3 78999999
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEe
Q psy10858 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQ 302 (457)
Q Consensus 224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~ 302 (457)
||||||||+|||||+.+|++|||||||+|||+.+++.+++++..+.++|+|||++||+++++. .||||++|++|++++.
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998877667999999999999985 5999999999999999
Q ss_pred cChhhhhhc
Q psy10858 303 DSPDGFKSK 311 (457)
Q Consensus 303 gs~~~l~~~ 311 (457)
|+++++...
T Consensus 258 g~~~~~~~~ 266 (320)
T PRK13631 258 GTPYEIFTD 266 (320)
T ss_pred CCHHHHhcC
Confidence 999988653
No 109
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-49 Score=380.95 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.8
Q ss_pred ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858 89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~ 163 (457)
+|+++|++++|++.+ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 578999999997621 279999999999999999999999999999999999999999999999988754331 234
Q ss_pred cCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCH-HHHHHH-HHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 164 GSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDE-SIWLFQ-MRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 164 r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~-~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++.+||++|++ .+++.+||++|+.+....++... ...... +.++++.+++. . .++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 67899999998 56778999999987655443322 222222 35788889984 3 6889999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQD 303 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~g 303 (457)
+.+|++|||||||+|||+.+++.+++.++.+.++ |+|||++||+++++. .||++++|++|+++..|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999998777655 899999999999997 49999999999998654
No 110
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=385.98 Aligned_cols=221 Identities=25% Similarity=0.326 Sum_probs=192.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCC--CCch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPA--SIYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~--~~~~ 160 (457)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++. ....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 47999999999987 7899999999999999999999999999999999999987 4999999998875 2222
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
...++++||+||++.+++.+||.||+.+.....+. +.+...+++.++++.+++. ..++++.+||||||||++|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 23457899999999999999999999876544332 3444556677888888873 2578999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999887754 6999999999999865 999999999999999999988654
No 111
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.6e-49 Score=384.86 Aligned_cols=222 Identities=23% Similarity=0.339 Sum_probs=194.5
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----------
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---------- 159 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---------- 159 (457)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++....
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999987 78999999999999999999999999999999999999999999999998764321
Q ss_pred ---hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHH
Q psy10858 160 ---HKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 160 ---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA 234 (457)
....++.++|++|++.+++.+|+.||+.+... ..+.......+.+.++++.+++.. .++.+.+||||||||++||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 12346789999999999999999999987532 234455555567788899999954 6889999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+.+|++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++....
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999877665 4899999999999986 59999999999999999999887654
Q ss_pred C
Q psy10858 313 S 313 (457)
Q Consensus 313 ~ 313 (457)
.
T Consensus 239 ~ 239 (252)
T TIGR03005 239 K 239 (252)
T ss_pred C
Confidence 3
No 112
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3e-49 Score=389.64 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=195.2
Q ss_pred cCceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc
Q psy10858 87 EEADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~ 159 (457)
+++|+++||+++|++. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 3689999999999631 246999999999999999999999999999999999999999999999998875322
Q ss_pred hhhhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELA--MFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA 234 (457)
....++.+||+||++. +++.+|+.+++.+..... ++......+++.++++.+++. . .++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 2333467999999975 677889999998765543 344445556788899999994 4 5788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
+||+++|++|||||||+|||+.+++.+++++..+.+ .|.|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence 999999999999999999999999999999877765 48999999999999975 9999999999999999999987653
No 113
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-49 Score=387.78 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=188.5
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+|
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-----PGAERG 73 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC-----CCCcEE
Confidence 5899999999987 789999999999999999999999999999999999999999999999987643 124689
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|++|++.+++.+||.||+.+.....+....+..+++.++++.+++.. .++++.+|||||||||+||+||+++|++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999987655556655555667888999999964 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChh
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPD 306 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~ 306 (457)
|||+|||+.+++.++++++.+. +.|+|||++||+++++.. ||++++|+ +|+++..++.+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999987764 458999999999999865 99999998 59999887653
No 114
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-49 Score=391.37 Aligned_cols=221 Identities=23% Similarity=0.346 Sum_probs=193.0
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~ 161 (457)
.|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 489999999997521 3699999999999999999999999999999999999999999999999876532 123
Q ss_pred hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
..++.|||+||++ .+++ .||+||+.+....++.+.++..+++.++++.+++. . .++++.+|||||||||+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3467899999997 4554 69999998765555555555666778889999995 3 6899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.+++.+++++..++++|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999988776679999999999999965 99999999999999999988765
No 115
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-49 Score=385.22 Aligned_cols=223 Identities=23% Similarity=0.309 Sum_probs=192.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~ 159 (457)
+.+++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|+++|.++... .
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 358999999999987 7899999999999999999999999999999999999987 489999999876421 2
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsL 233 (457)
....++.+||+||++.+++ +||+||+.+.....+. ......+++.++++.+++. . .++++.+|||||||||+|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 2334678999999998885 8999999886544443 3344556677888888872 2 588999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++|++++.|+++++.+..
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 240 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999988775 47999999999999865 9999999999999999999987654
Q ss_pred C
Q psy10858 313 S 313 (457)
Q Consensus 313 ~ 313 (457)
.
T Consensus 241 ~ 241 (254)
T PRK14273 241 K 241 (254)
T ss_pred C
Confidence 3
No 116
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-49 Score=390.13 Aligned_cols=222 Identities=24% Similarity=0.268 Sum_probs=193.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus 9 ~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 9 DTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 368999999999987 789999999999999999999999999999999999999999999999987654333344678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh-c---CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI-Y---GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l-~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++|+||++.+++.+|+.||+.+.... . +.......+++..+++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 166 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999999875321 1 1112234456788899999954 78999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
++|||||||+|||+.+++.+++++..+.++ |.|||++||+++++. .||++++|++|+++..|+++++.+
T Consensus 167 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999998777654 899999999999996 499999999999999999988754
No 117
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.4e-49 Score=400.13 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=202.8
Q ss_pred cCceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchh
Q psy10858 87 EEADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHK 161 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~ 161 (457)
.++|+++|+++.|+. +...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++......
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 368999999999953 2257999999999999999999999999999999999999996 99999999988654322
Q ss_pred h----hcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHH
Q psy10858 162 T----AGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRR 230 (457)
Q Consensus 162 ~----~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQR 230 (457)
. .++.|+|+||++ .+++.+|+.+++......+ +.+..+..+++.++++.++|+. .++++++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 2 235799999998 6889999999997665544 4566666778888999999963 367999999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|+|||||+.+|++||+||||+|||+.++..++++++.++++ |.|||++|||++++.. ||||++|.+|+|++.|+++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999998777654 9999999999999965 999999999999999999999
Q ss_pred hhcCCcccHHHHH
Q psy10858 309 KSKYSMPKLSDVF 321 (457)
Q Consensus 309 ~~~~~~~~l~~~f 321 (457)
.+....++....+
T Consensus 250 ~~~p~~pyt~~l~ 262 (330)
T PRK09473 250 FYQPSHPYSIGLL 262 (330)
T ss_pred HhCCCCHHHHHHH
Confidence 8876655555444
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-49 Score=392.63 Aligned_cols=224 Identities=24% Similarity=0.345 Sum_probs=197.0
Q ss_pred CceEEEeeEEEeCCC----CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhh
Q psy10858 88 EADEGKNTEKEELKP----SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKT 162 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~----~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~ 162 (457)
++++++|++++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 589999999999741 256999999999999999999999999999999999999999999999998875422 233
Q ss_pred hcCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 AGSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 ~r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.++.+||+||++. .+...||.+|+.|.....+++..+..+++.++++.++|.. .++++.+|||||||||+||+||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4678999999974 2234699999988766666666666778889999999954 7899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999887755 59999999999999977999999999999999999988653
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-49 Score=380.62 Aligned_cols=214 Identities=27% Similarity=0.403 Sum_probs=186.6
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~IG 168 (457)
|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...... ..++.+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999987 7899999999999999999999999999999999999999999999999877543322 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|+||++.+++.+|+.||+.+....++... .+...++++.++ +.. .++++.+||||||||++||+||+.+|++|||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999987655443322 223455666666 443 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999998777654 8999999999999975 999999999999999998887
No 120
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-49 Score=382.40 Aligned_cols=220 Identities=23% Similarity=0.315 Sum_probs=192.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhhc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~r 164 (457)
++++++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++........+
T Consensus 1 ~~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 1 MIAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred CceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 36899999999987 789999999999999999999999999999999999974 7999999999987654434456
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
+.+||+||++.+|+ .|++||+.+.....+. ......+++.++++.+++. . .++.+.+|||||||||+|||||
T Consensus 79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 79 KNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 78999999999987 6999999886555443 2234455677889999984 2 5788999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+++|++|||||||+|||+.++..+++.+..+.+ |+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999877654 8999999999999865 999999999999999999998764
No 121
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-49 Score=390.33 Aligned_cols=224 Identities=23% Similarity=0.287 Sum_probs=197.3
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+|+++|++++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++........++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 479999999999742 2459999999999999999999999999999999999999999999999988754333345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++. +++..||.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 6777899999987655555555566677888999999954 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||||+|||+.+++.+++++..+.++ |+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999998777654 9999999999999977999999999999999999887653
No 122
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-49 Score=388.16 Aligned_cols=223 Identities=22% Similarity=0.314 Sum_probs=194.3
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
...+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........++
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 3468999999999987 78999999999999999999999999999999999999999999999998775433334456
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhh-hcC---CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGM-IYG---MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g---~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.+||+||++.+++.+|++||+.+... ..+ ...+...+++.++++.+++.. .++.+.+||||||||++|||||+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 89999999999999999999987421 111 112233456778899999954 7899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|++|||||||+|||+.+++.+++++..+.+ .|.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999877765 48999999999999865 99999999999999999988764
No 123
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-49 Score=386.23 Aligned_cols=223 Identities=21% Similarity=0.317 Sum_probs=193.5
Q ss_pred cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC-
Q psy10858 85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI- 158 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~- 158 (457)
..+.+|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 34678999999999987 7899999999999999999999999999999999999974 899999999887431
Q ss_pred -chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHH
Q psy10858 159 -YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRR 230 (457)
Q Consensus 159 -~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQR 230 (457)
.....++.+||+||++.+++. ||.||+.+....++. +.....+++.++++.+++.. .++.+.+||||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 223346789999999998875 999999876544443 23344566788899999842 478899999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
|+|||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999887754 7899999999999965 9999999999999999999887
Q ss_pred hc
Q psy10858 310 SK 311 (457)
Q Consensus 310 ~~ 311 (457)
..
T Consensus 251 ~~ 252 (267)
T PRK14235 251 TN 252 (267)
T ss_pred hC
Confidence 54
No 124
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-49 Score=389.40 Aligned_cols=221 Identities=24% Similarity=0.345 Sum_probs=192.5
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~ 166 (457)
+|+++|++++|++. +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++... .....++.
T Consensus 1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 58899999999631 5799999999999999999999999999999999999999999999999887421 12234678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
|||+||++. .+..+||.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999973 3345799999987544445555556667888999999964 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.++..+++++..+.++|.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999998877667999999999999986 499999999999999999998764
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-49 Score=382.23 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=190.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 35899999999987 7899999999999999999999999999999999999999999999999887543333456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
||+||++.+++ .|++||+.+.....+. ...++.++++.+++. . .++.+.+|||||||||+||+||+.+|++||
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 80 GMVFQQPHLFE-GTVKDNIEYGPMLKGE----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEEecCchhch-hhHHHHHhcchhhcCc----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886 6999999865433221 134567788899995 3 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+|||+.+++.+++.++.+++ .|+|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999887765 49999999999999865 999999999999999999988754
No 126
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-49 Score=384.63 Aligned_cols=229 Identities=24% Similarity=0.336 Sum_probs=197.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~~ 160 (457)
.+++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.. ...
T Consensus 12 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 57999999999987 789999999999999999999999999999999999986 589999999988742 122
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA 234 (457)
...++++||+||++.+++ +|++||+.+....+ +.+..+..+++.++++.+++. . .++.+.+||||||||++||
T Consensus 90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 344678999999999887 89999998765443 455555566788889999873 2 5788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 247 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999988775 47899999999999865 99999999999999999999876544
Q ss_pred cccHHHH
Q psy10858 314 MPKLSDV 320 (457)
Q Consensus 314 ~~~l~~~ 320 (457)
.+.+.+.
T Consensus 248 ~~~~~~~ 254 (260)
T PRK10744 248 KKQTEDY 254 (260)
T ss_pred cHHHHHH
Confidence 4444443
No 127
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.4e-49 Score=385.44 Aligned_cols=219 Identities=19% Similarity=0.291 Sum_probs=192.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 679999999987 789999999999999999999999999999999999999999999999988755443344567999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 170 MPQELAMFGELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||++.+++.+||.||+.++.. .++....+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999988888999999987532 122222333456778899999954 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.++++|.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999998887777999999999999996 599999999999999999988754
No 128
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.5e-49 Score=387.15 Aligned_cols=222 Identities=24% Similarity=0.312 Sum_probs=193.1
Q ss_pred ceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh
Q psy10858 89 ADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~ 161 (457)
+|+++||+++|+.. ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999631 26799999999999999999999999999999999999999999999999877543221
Q ss_pred ---hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858 162 ---TAGSKVGYMPQEL--AMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 162 ---~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL 233 (457)
..++.|||+||++ .+++.+||.||+.+.... .++......+++.++++.+++. . .++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2456799999997 467789999999765432 2444444556788899999995 4 689999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||+++|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999998777654 8999999999999974 99999999999999999999875
No 129
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-49 Score=374.80 Aligned_cols=202 Identities=30% Similarity=0.339 Sum_probs=176.1
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv 170 (457)
+++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ...++++||+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 469999999999999999999999999999999999999999999999987643 2345689999
Q ss_pred cCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 171 PQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 171 pQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
||++. .+..+|++||+.++....+. ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99974 23467999999876543331 1245778899999964 789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII 300 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~ 300 (457)
||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999988876779999999999999975 9999999999974
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.4e-49 Score=379.72 Aligned_cols=218 Identities=24% Similarity=0.247 Sum_probs=188.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh-hcCc
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT-AGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~-~r~~ 166 (457)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++....... .+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999987 78999999999999999999999999999999999995 799999999998775433222 2345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcC-------CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYG-------MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFTIA 236 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-------~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA~A 236 (457)
++|+||++.+++.+|+.||+.+...... .+..+..+++.++++.++++ . .++.+. +|||||||||+||+|
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 9999999999999999999987543221 12234456678889999996 3 577887 599999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhh
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~ 309 (457)
|+.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999999999999988877779999999999999964 7999999999999999887543
No 131
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-48 Score=397.80 Aligned_cols=228 Identities=17% Similarity=0.231 Sum_probs=193.1
Q ss_pred CceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCccCCCCchh
Q psy10858 88 EADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 88 ~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~----p~sG~I~i~G~~~~~~~~~ 161 (457)
++|+++||+++|+. +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 37999999999942 12679999999999999999999999999999999999996 5899999999987653322
Q ss_pred h----hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhc---C---CCHHHHHHHHHHHHhHcCCCC----CCCCCCCCCh
Q psy10858 162 T----AGSKVGYMPQELA--MFGELTIKETLNFFGMIY---G---MDESIWLFQMRKYSHVLKLPN----LERPVKYLSG 225 (457)
Q Consensus 162 ~----~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~---g---~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSG 225 (457)
. .++.||||||++. +++.+||.+++.+....+ + ....+..+++.++++.++|.. +++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1 2457999999985 678899999997543211 1 112344567888999999953 4789999999
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||||||+||+||+.+|++|||||||+|||+.++.+++++++.+.+ .|.|||+||||++++.. ||||++|++|+|++.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999887766 49999999999999965 9999999999999999
Q ss_pred ChhhhhhcCCcc
Q psy10858 304 SPDGFKSKYSMP 315 (457)
Q Consensus 304 s~~~l~~~~~~~ 315 (457)
+++++.+....+
T Consensus 242 ~~~~i~~~p~~~ 253 (330)
T PRK15093 242 PSKELVTTPHHP 253 (330)
T ss_pred CHHHHHhCCCCH
Confidence 999988754433
No 132
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=384.88 Aligned_cols=231 Identities=22% Similarity=0.305 Sum_probs=193.7
Q ss_pred cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC-
Q psy10858 85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI- 158 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~- 158 (457)
...++++++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|+++|+++...
T Consensus 17 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 17 AKEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 34568999999999987 789999999999999999999999999999999999864 7999999999887532
Q ss_pred -chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHH
Q psy10858 159 -YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRL 231 (457)
Q Consensus 159 -~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRl 231 (457)
.....++.+||+||++.+++. |++||+.+.....+.. .....+.+.++++.+++. . .++++.+||||||||+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 222346789999999998875 9999998764433322 223345566777777773 2 5788999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999887754 6899999999999864 99999999999999999999876
Q ss_pred cCCcccHHH
Q psy10858 311 KYSMPKLSD 319 (457)
Q Consensus 311 ~~~~~~l~~ 319 (457)
......+.+
T Consensus 253 ~~~~~~~~~ 261 (268)
T PRK14248 253 SPKQQKTED 261 (268)
T ss_pred CCCChHHHH
Confidence 543334443
No 133
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=382.88 Aligned_cols=223 Identities=21% Similarity=0.306 Sum_probs=193.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCC--Cc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPAS--IY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~--~~ 159 (457)
.++|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|+++.. ..
T Consensus 10 ~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 10 QEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 468999999999987 789999999999999999999999999999999999987 3 69999999987742 12
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
....++.+||+||++.+++. ||+||+.+....++. +.++..+++.++++.+++. ..++.+.+||||||||++|
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l 166 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI 166 (259)
T ss_pred HHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 22346789999999998875 999999876555553 3344556677788888873 2578999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||+++|++|||||||+|||+.++..+++++..+.+ ++|||++||+++++.. |||+++|++|++++.|+++++..+.
T Consensus 167 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 167 ARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 9999999999999999999999999999999888754 7999999999999865 9999999999999999999987653
Q ss_pred C
Q psy10858 313 S 313 (457)
Q Consensus 313 ~ 313 (457)
.
T Consensus 246 ~ 246 (259)
T PRK14274 246 D 246 (259)
T ss_pred C
Confidence 3
No 134
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=377.24 Aligned_cols=225 Identities=22% Similarity=0.287 Sum_probs=191.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
|++++|++++|++ .. .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..... .++.+|
T Consensus 1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 5889999999986 43 39999999999999999999999999999999999999999999987654322 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+++.+|+.||+.+.........+...+++.++++.+++.. .++++.+||||||||++||+||+.+|++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999976532110112234556788899999954 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
|||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++.+. ..+.+.|.
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~---~~~~~~~~ 228 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG---KASASALL 228 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC---hhHHHHhh
Confidence 99999999999999999877654 48999999999999865 999999999999999999988754 24555553
No 135
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=379.93 Aligned_cols=228 Identities=23% Similarity=0.313 Sum_probs=195.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~~ 160 (457)
++++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|+++|.++... ..
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 3 IKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred cEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 68999999999987 7899999999999999999999999999999999999875 899999999887432 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++ +|++||+.+.....+. ...+...++.++++.+++. ..++.+.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 234678999999999887 8999999876655554 2344455677788888873 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
+||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++.....
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCC
Confidence 999999999999999999999999999999887765 6899999999999865 99999999999999999999876533
Q ss_pred cccHHH
Q psy10858 314 MPKLSD 319 (457)
Q Consensus 314 ~~~l~~ 319 (457)
.+.+.+
T Consensus 239 ~~~~~~ 244 (251)
T PRK14270 239 KKETED 244 (251)
T ss_pred ChHHHH
Confidence 334444
No 136
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.9e-49 Score=375.79 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=176.7
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv 170 (457)
+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++. ..++++||+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999987 78999999999999999999999999999999999999999999999997653 245689999
Q ss_pred cCCCCCC--CCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 171 PQELAMF--GELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 171 pQ~~~L~--~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
||++.++ ..+||+||+.+..... +...+...+++.++++.+++.. .++++.+|||||||||+||+||+.+|++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9998764 3479999998754321 1122334566788899999954 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999988776679999999999999965 9999999876 55543
No 137
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=381.26 Aligned_cols=221 Identities=22% Similarity=0.346 Sum_probs=192.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~ 160 (457)
.+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|.++.. ...
T Consensus 3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 47999999999987 7899999999999999999999999999999999999974 79999999987642 122
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||++|++.+++.+||+||+.+....++. +.+...+++.++++.+++. ..++.+.+|||||||||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 34467899999999999999999999876554443 3444556677888888873 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEe------CCeEEEecChhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLY------KGRIIAQDSPDG 307 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~------~GkI~~~gs~~~ 307 (457)
|||+.+|++|||||||+|||+.+++.++++++.++ +++|||++||+++++. .|||+++|+ +|+|++.|++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 99999999999999999999999999999988775 4689999999999986 599999997 799999999998
Q ss_pred hhhc
Q psy10858 308 FKSK 311 (457)
Q Consensus 308 l~~~ 311 (457)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14241 240 IFSN 243 (258)
T ss_pred HHhC
Confidence 8654
No 138
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-48 Score=378.81 Aligned_cols=228 Identities=22% Similarity=0.278 Sum_probs=193.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NI---SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p---~sG~I~i~G~~~~~~--~~ 160 (457)
++++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++... ..
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 4 PILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 57999999999987 78999999999999999999999999999999999995 36 599999999877431 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++ +||+||+.+.....+.. .....+++.++++.+++. ..++.+.+|||||||||+||
T Consensus 82 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred HhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 234568999999999887 89999998765544543 233455677788888863 25789999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 239 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPK 239 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999999999999999887754 6999999999999864 99999999999999999999876543
Q ss_pred cccHHH
Q psy10858 314 MPKLSD 319 (457)
Q Consensus 314 ~~~l~~ 319 (457)
.....+
T Consensus 240 ~~~~~~ 245 (252)
T PRK14239 240 HKETED 245 (252)
T ss_pred CHHHHH
Confidence 333444
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-48 Score=382.95 Aligned_cols=233 Identities=21% Similarity=0.304 Sum_probs=197.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCC-----c
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASI-----Y 159 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~-----~ 159 (457)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++... .
T Consensus 3 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 3 TIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred cEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 58999999999987 88999999999999999999999999999999999999986 49999999876432 1
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh--------cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMI--------YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR 230 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l--------~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR 230 (457)
....++++||+||++.+++.+||.||+.+.... .+........++.++++.+++.. .++.+.+||||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence 123456799999999999999999999865321 11112334556788999999954 689999999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l 308 (457)
|+|||||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999887764 4899999999999985 4999999999999999999886
Q ss_pred hhcCCcccHHHHHHhhhc
Q psy10858 309 KSKYSMPKLSDVFYKITN 326 (457)
Q Consensus 309 ~~~~~~~~l~~~f~~~~~ 326 (457)
. .+.+.+.|.....
T Consensus 241 ~----~~~~~~~~~~~~~ 254 (262)
T PRK09984 241 D----NERFDHLYRSINR 254 (262)
T ss_pred c----cHHHHHHHhhhhc
Confidence 2 2456667765543
No 140
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=375.95 Aligned_cols=229 Identities=26% Similarity=0.381 Sum_probs=199.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~ 166 (457)
++++++||+..||. ..||++|||+|++|||++|+|+||||||||||+|+|+.++.+|+|.++|++++... ....+..
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 68999999999999 99999999999999999999999999999999999999999999999999998653 4556789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CC-CCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LP-NLERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
|+||||...+|+.|||+|||.+.+....- +......++++.+.|- |. ..+++.++|||||||.++|||||+.+|++|
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999987554322 1111222556666664 32 368999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
+|||||.||-|.-.++|.+.++.++++ |+||++|.++...|. .+||.++|.+|+|+.+|+.+++.+. +.+.+.|+
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~---~~v~~~yL 235 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD---PDVREAYL 235 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC---HHHHHHhh
Confidence 999999999999999999998888755 889999999999996 5999999999999999999999865 34666665
No 141
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.7e-48 Score=373.27 Aligned_cols=219 Identities=30% Similarity=0.465 Sum_probs=192.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... .++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----DLHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----ccccEEE
Confidence 578999999987 7899999999999999999999999999999999999999999999999876421 1257999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|++||+.++...++.+. .++.++++.+++.. .++.+.+||||||||++|||||+.+|++|||||
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCH----HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999987765555432 34667888999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhh
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKI 324 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~ 324 (457)
||+|||+.+++.+++++..+.++|+|||++||+++++. .|||+++|++|++++.|++.+ ...+++.|.++
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~------~~~~~~~~~~~ 221 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK------SENLEKLFVEV 221 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh------cccHHHHHHHh
Confidence 99999999999999998877667999999999999996 499999999999999998764 24466777654
No 142
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-49 Score=371.93 Aligned_cols=208 Identities=25% Similarity=0.299 Sum_probs=179.6
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.+||
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 478999999986 44 39999999999999999999999999999999999999999999987754322 3467999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
++|++.+++.+|++||+.+.........+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999987543211112234556788899999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999877654 48999999999999965 9999999999998653
No 143
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=379.10 Aligned_cols=229 Identities=21% Similarity=0.263 Sum_probs=195.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~~ 160 (457)
..|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 35899999999987 789999999999999999999999999999999999986 4 699999999887432 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++.+|+.||+.+.....+ .+..+..+++.++++.+++. ..++.+.+|||||||||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 2346789999999999999999999987544444 23344456677888888873 24678999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++. .|||+++|++|++++.|+++++.....
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999999999999999888765 689999999999986 499999999999999999999876544
Q ss_pred cccHHH
Q psy10858 314 MPKLSD 319 (457)
Q Consensus 314 ~~~l~~ 319 (457)
.....+
T Consensus 240 ~~~~~~ 245 (252)
T PRK14256 240 KKQTED 245 (252)
T ss_pred cHHHHH
Confidence 443443
No 144
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-48 Score=384.36 Aligned_cols=225 Identities=20% Similarity=0.272 Sum_probs=192.1
Q ss_pred cccccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC
Q psy10858 83 KEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS 157 (457)
Q Consensus 83 ~~~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~ 157 (457)
+.....+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 7 ~~~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 7 KISKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CCCCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3445578999999999987 789999999999999999999999999999999999987 699999999987642
Q ss_pred --CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHH
Q psy10858 158 --IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRR 230 (457)
Q Consensus 158 --~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQR 230 (457)
......++.+||+||++.+|+ .||+||+.+.....+... ...+++.++++.+++. . .++++.+||||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 122344678999999999887 499999988765544432 2344566677777762 2 588899999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-----------Ce
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-----------GR 298 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-----------Gk 298 (457)
|+|||||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++ |+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999988775 47999999999999965 999999996 67
Q ss_pred EEEecChhhhhhcC
Q psy10858 299 IIAQDSPDGFKSKY 312 (457)
Q Consensus 299 I~~~gs~~~l~~~~ 312 (457)
+++.|+++++.+..
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 89999999987643
No 145
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-48 Score=378.24 Aligned_cols=227 Identities=22% Similarity=0.320 Sum_probs=193.5
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cchh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~~ 161 (457)
.|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.. ....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999987 7899999999999999999999999999999999999763 79999999988753 1222
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~ 235 (457)
..++.+||+||++.+++ +|++||+.+....++. +.+...+++.++++.+++. ..++++.+||||||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 34678999999999887 8999999886555554 2334556677778888763 247889999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|++++.|+++++......
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 238 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKD 238 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 9999999999999999999999999999988775 48999999999999865 999999999999999999988765433
Q ss_pred ccHHH
Q psy10858 315 PKLSD 319 (457)
Q Consensus 315 ~~l~~ 319 (457)
..+.+
T Consensus 239 ~~~~~ 243 (250)
T PRK14240 239 KRTED 243 (250)
T ss_pred hHHHH
Confidence 44444
No 146
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-48 Score=377.86 Aligned_cols=221 Identities=20% Similarity=0.304 Sum_probs=191.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNI--SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl---l~p--~sG~I~i~G~~~~~~--~~ 160 (457)
++|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+ .+| ++|+|.++|+++... ..
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 58999999999987 7899999999999999999999999999999999997 455 589999999887532 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++ .|+.||+.+....++.. .+...+++.++++.+++.. .++++.+||||||||++||
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 334678999999998887 69999998765544433 2334566778888888842 5788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++. .|||+++|++|++++.|+++++.+..
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 99999999999999999999999999999988874 4799999999999985 49999999999999999999987653
No 147
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.5e-48 Score=379.48 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=191.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-----CCCCchhh
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKT 162 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-----~~~~~~~~ 162 (457)
++|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.+ +.......
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 5 PLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred ceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 57999999999987 789999999999999999999999999999999999999999999999987 54332221
Q ss_pred ----hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHH
Q psy10858 163 ----AGSKVGYMPQELA--MFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 163 ----~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsL 233 (457)
.++.+||+||++. +++.+|+.+|+.+....++. .......++.++++.+++. ..++.+.+|||||||||+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 2457999999984 67778999999764333322 2234456678889999995 3689999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|||||||+|||+.+++.+++.++.+.++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998776554 8999999999999974 999999999999999999988754
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-48 Score=374.66 Aligned_cols=218 Identities=30% Similarity=0.387 Sum_probs=195.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..... .++.+||
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999987 789999999999999999999999999999999999999999999999987754322 3568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
++|++.+++.+|+.+|+.+....++.......+++..+++.+++.. .++.+.+||+||||||+|||||+.+|++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999987665556555556667788899999954 788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+|||+.+++.++++++.+.++ |+|||++||+++++.. |||+++|++|++.+.|+++++...
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999998777654 9999999999999865 999999999999999998887654
No 149
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-48 Score=375.09 Aligned_cols=217 Identities=27% Similarity=0.441 Sum_probs=193.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ . +++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..... .++.+||
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 568999999986 4 8999999999999999999999999999999999999999999999988754322 3568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 9999999999999999987655555555556667788899999954 789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+|||+.+++.+|++++.+.++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999997776554 9999999999999864 999999999999999999888654
No 150
>KOG0059|consensus
Probab=100.00 E-value=1.6e-49 Score=448.69 Aligned_cols=228 Identities=32% Similarity=0.504 Sum_probs=213.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-chhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-~~~~~r~~ 166 (457)
.++.++|++|.|+..+. |++++||.|++|||+|++|+|||||||++|||+|..+|++|++++.|.++... +....++.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 67999999999998322 99999999999999999999999999999999999999999999999887643 22346789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+|||||++++++.+|.+|+|.++++++|++.+++.+.++.+++.++| ++++++++.||||+|||+++|.|++.+|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999 45899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~ 316 (457)
|||||+||||.+|+.+|+++..++++|++||+|||.|+|++. |||+++|.+|++.+.|++++++++++...
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy 793 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGY 793 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcE
Confidence 999999999999999999999998888899999999999997 99999999999999999999999987543
No 151
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=400.31 Aligned_cols=214 Identities=23% Similarity=0.336 Sum_probs=188.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r 164 (457)
||++ |++|+|++ +. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ....+
T Consensus 1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 5778 99999987 54 3 899999999999999999999999999999999999999999998764311 12235
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+++||+||++.+|+.+||+||+.+... ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l 149 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL 149 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 789999999999999999999987532 123456788899999965 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+|||+.+++.+++.++.+.++ |+|||++|||++++.. |||+++|++|+++..|+++++.+...
T Consensus 150 lLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999998776654 8999999999999965 99999999999999999999987643
No 152
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-48 Score=387.87 Aligned_cols=222 Identities=25% Similarity=0.327 Sum_probs=190.7
Q ss_pred CceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----C-c
Q psy10858 88 EADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----I-Y 159 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~-~ 159 (457)
..|+++|++++|++.. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.. . .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997621 249999999999999999999999999999999999999999999999987642 1 1
Q ss_pred hhhhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
....++.|||++|++. ++ ..|++||+.+.....+...+...+++.++++.++++ . .++++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 2334678999999973 44 469999998765444555555556777889999994 3 68999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999877654 48999999999999865 99999999999999999988754
No 153
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=382.47 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=184.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++. ..++.
T Consensus 10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 367999999999987 78999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||++|++.+++.+||+||+.+... . ....++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998999999987421 1 12345778899999964 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
|||||+|||+.+++.+++++..+. +.|+|||++||+++++.. ||++++|++|++++.++.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999987764 458999999999999864 9999999999999988754
No 154
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.4e-48 Score=397.50 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=187.2
Q ss_pred eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCcEEE
Q psy10858 94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSKVGY 169 (457)
Q Consensus 94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~IGy 169 (457)
|++++|++ +. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ....++.+||
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999987 55 4 999999999999999999999999999999999999999999998774321 1123578999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+|+.+||+||+.+..... ...+..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999999999999998764432 22334556788999999965 789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999998776654 8999999999999965 9999999999999999999987654
No 155
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-48 Score=377.23 Aligned_cols=218 Identities=25% Similarity=0.333 Sum_probs=182.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997433679999999999999999999999999999999999999999999999987654333345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+||++.+++ .||.||+.+... +........ .+.++++.+ ++.. .++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999987432 222222111 122334444 3332 57789999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.+++.++.+. +|+|||++||+++++..||++++|++|+++..|+++++.+.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999988775 48999999999999977999999999999999999988765
No 156
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.8e-48 Score=373.30 Aligned_cols=218 Identities=28% Similarity=0.398 Sum_probs=194.5
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ +.+++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEE
Confidence 578999999987 78999999999999999999999999999999999999999999999998775432 23568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999987665555555445566788899999854 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+|||+.+++.+++++....++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999998876655 8999999999999865 999999999999999999988653
No 157
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-48 Score=374.79 Aligned_cols=220 Identities=22% Similarity=0.332 Sum_probs=190.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~~ 160 (457)
++|+++|++++|+. +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++... ..
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 47999999999987 789999999999999999999999999999999999997 4899999999876431 22
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||++|++.+++ .||+||+.+.....+.. .+...+++.++++.+++. .+++.+.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 234678999999999886 79999998765544443 233445677788888883 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999988765 47999999999999865 999999999999999999988654
No 158
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=414.57 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=194.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~ 166 (457)
++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...... ..++.
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 57999999999987 7899999999999999999999999999999999999999999999999887532222 23467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhc---C-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIY---G-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+||+||++.+++.+||+||+.+....+ + .+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754322 2 334445567888999999965 68999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999988877779999999999999965 9999999999999999988764
No 159
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-48 Score=374.26 Aligned_cols=221 Identities=23% Similarity=0.329 Sum_probs=189.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~ 160 (457)
.+++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+|+|+|+++|+ +|+|+++|.++... ..
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 3 LLLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 37899999999987 78999999999999999999999999999999999999874 89999999876431 22
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++.+|+.||+.+.....+. ..+...+++.++++.+++. ..++++.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 23467899999999999999999999875443333 2333445566666666542 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999988775 47999999999999875 999999999999999999998764
No 160
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=373.93 Aligned_cols=227 Identities=23% Similarity=0.315 Sum_probs=193.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~ 160 (457)
++++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|+++|.++... ..
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 57999999999987 78999999999999999999999999999999999999997 69999999876431 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH-HHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++. |++||+.+....++... +...+++.++++.+++. ..++.+.+|||||||||+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 2346789999999998875 99999987655444432 23445566677777763 25789999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.++..++++++.+. +++|||++||+++++.. ||++++|++|+++..|+++++.....
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999988774 58999999999999865 89999999999999999999876544
Q ss_pred cccHH
Q psy10858 314 MPKLS 318 (457)
Q Consensus 314 ~~~l~ 318 (457)
...+.
T Consensus 239 ~~~~~ 243 (251)
T PRK14249 239 DKRTE 243 (251)
T ss_pred ChHHH
Confidence 33333
No 161
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-48 Score=368.34 Aligned_cols=206 Identities=27% Similarity=0.337 Sum_probs=178.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chhhhcC
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGS 165 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~~~r~ 165 (457)
+.+ +|+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 344 99999998 655 99999999 99999999999999999999999999999999999876421 1123456
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
.+||+||++.+++.+|+.||+.+....+ ......+++.++++.+++.. .++++.+||||||||++||+||+.+|++|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999998764322 23334556788899999964 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||||||+|||+.+++.++++++.++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999998777654 8999999999999864 9999999999998765
No 162
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-48 Score=459.25 Aligned_cols=226 Identities=27% Similarity=0.421 Sum_probs=206.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
...|+++||+|+|+++++.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. .....++.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 45899999999996323789999999999999999999999999999999999999999999999998753 23345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+|||||++.+++.+||+||+.+++++++.+.++.+++++++++.++|.. .++++++|||||||||+||+||+++|++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999988888776667778899999999965 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
|||||+||||.+++.+|++++..+ +|+|||++||++++++. ||||++|++|++++.|++++++++++.
T Consensus 1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~ 1153 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153 (2272)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCC
Confidence 999999999999999999988774 59999999999999975 999999999999999999999987763
No 163
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.1e-48 Score=366.13 Aligned_cols=201 Identities=28% Similarity=0.422 Sum_probs=178.1
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCcE
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSKV 167 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~I 167 (457)
++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999987 78999999999999999999999999999999999999999999999998754211 12345789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||++|++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+||||||||++||+||+.+|++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998665555555556677888999999954 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
||||+|||+.+++.++++++.+.++|.|||++||+++.+..||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999887766799999999999987779999875
No 164
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=373.13 Aligned_cols=220 Identities=25% Similarity=0.371 Sum_probs=190.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~~ 160 (457)
++|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ..
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 47999999999987 7899999999999999999999999999999999999974 899999999876431 12
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
...++.++|+||++.+++ +|++||+.+.....+.. .....+.+.++++.+++.. .++.+.+||||||||++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 234578999999999887 89999998765544432 3334556677888888732 5789999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+||+.+|++|||||||+|||+.+++.+++++..+.+ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999999877654 7999999999999864 999999999999999999988754
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-48 Score=413.23 Aligned_cols=220 Identities=27% Similarity=0.342 Sum_probs=195.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchh-hhc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHK-TAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~-~~r 164 (457)
++|+++|++++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|.++...... ..+
T Consensus 4 ~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 4 YLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred ceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 58999999999987 7899999999999999999999999999999999999996 899999999887543322 235
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhc--C-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIY--G-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~--g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
+.+||+||++.+++.+||+||+.+....+ + .+.+...+++.++++.+++.. .++++.+|||||||||+||+||+.+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 67999999999999999999998865432 2 234455567888999999964 7899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
|++|||||||+|||+.++..+++++..++++|+|||++||+++++.. |||+++|++|+++..|+++++.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 162 ARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999988777779999999999999965 9999999999999999988764
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=377.19 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=192.6
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI-- 158 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~-- 158 (457)
...+|+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 4468999999999987 889999999999999999999999999999999999986 5899999999887431
Q ss_pred chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHH
Q psy10858 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLS 232 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRls 232 (457)
.....++.+||+||++.+++ .||+||+.+.....+. ......+++.++++.+++. ..++++.+||||||||++
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 12234678999999998887 5999999886544443 3344556677888888873 257899999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+.+|++|||||||+|||+.++..++++++.+. ++.|||++||+++++. .|||+++|++|++++.|+++++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988775 4799999999999985 5999999999999999999998654
No 167
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=373.17 Aligned_cols=219 Identities=23% Similarity=0.327 Sum_probs=189.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC-Cchhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS-IYHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~-~~~~~ 162 (457)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.. .....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 6899999999987 7899999999999999999999999999999999999986 59999999987642 22234
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHHH
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~A 236 (457)
.++.+||+||++.+++ .||.||+.+.....+.. .....+++.++++.+++. ..++++.+|||||||||+||||
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 4678999999999887 89999998765444432 333445667777777763 2578899999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999888755 6999999999999875 999999999999999999887654
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-48 Score=412.76 Aligned_cols=221 Identities=21% Similarity=0.262 Sum_probs=195.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~ 166 (457)
++|+++|++++|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...... ..++.
T Consensus 4 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 4 PYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred ceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999999987 7899999999999999999999999999999999999999999999999887543322 23457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhh----hcCC---CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGM----IYGM---DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~----l~g~---~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
+||+||++.+++.+||+||+.+... .++. +..+..+++.++++.+++.. .++++.+|||||||||+||+||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986432 1232 23445567888999999964 78999999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999988877779999999999999975 99999999999999999988653
No 169
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=377.88 Aligned_cols=221 Identities=23% Similarity=0.318 Sum_probs=191.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~ 159 (457)
..+|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++... .
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 458999999999987 789999999999999999999999999999999999987 4899999999887531 2
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
....++.++|+||++.+|+. |++||+.+.....+.. .....+++.++++.+++. ..++.+.+|||||||||+|
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 22346789999999999886 9999998765555542 233445677788888874 2578899999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999999999999999999887765 7899999999999865 999999999999999999988654
No 170
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=372.76 Aligned_cols=231 Identities=23% Similarity=0.329 Sum_probs=194.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~ 159 (457)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++... .
T Consensus 4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 368999999999987 789999999999999999999999999999999999976 3 489999999887542 2
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
....++.+||+||++.+|+. ||+||+.+....++. ......+.+.++++.+++. ..++.+.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 23446789999999998875 999999987655543 2233455677778888773 2578999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++....
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence 9999999999999999999999999999999887755 6899999999999964 9999999999999999999887542
Q ss_pred CcccHHHHHH
Q psy10858 313 SMPKLSDVFY 322 (457)
Q Consensus 313 ~~~~l~~~f~ 322 (457)
...+.+.|.
T Consensus 240 -~~~~~~~~~ 248 (253)
T PRK14261 240 -HEELTENYI 248 (253)
T ss_pred -CcHHHHHHh
Confidence 223444444
No 171
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=380.60 Aligned_cols=229 Identities=23% Similarity=0.330 Sum_probs=195.1
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI-- 158 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~-- 158 (457)
..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4578999999999987 789999999999999999999999999999999999987 6899999999876421
Q ss_pred chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
.....++++||+||++.+++. ||.||+.+.....+.+. ...+++.++++.+++. ..++++.+|||||||||+|
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred chHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 223346789999999988875 99999987665555443 3456678888888874 2578899999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEE-EEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVA-FLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~-im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|+||||||||+|||+.+++.++++++.+++ +.|||++||+++++.. |||++ +|++|+++..|+++++...
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999888765 4899999999999875 99975 6799999999999888765
Q ss_pred CCcccHHH
Q psy10858 312 YSMPKLSD 319 (457)
Q Consensus 312 ~~~~~l~~ 319 (457)
.....+.+
T Consensus 271 ~~~~~~~~ 278 (285)
T PRK14254 271 PESQRVED 278 (285)
T ss_pred cCCHHHHH
Confidence 43333444
No 172
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-48 Score=371.60 Aligned_cols=218 Identities=22% Similarity=0.306 Sum_probs=183.5
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++.++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999998632379999999999999999999999999999999999999999999999987654333345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+||++.+++ .||+||+.++.... ......+ .+.++++.+ ++.. .++++.+||||||||++||+||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 69999998754321 2222211 133444444 4433 57789999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.+++.++.+. +|.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988775 48999999999999977999999999999999999888655
No 173
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-47 Score=365.64 Aligned_cols=209 Identities=24% Similarity=0.345 Sum_probs=180.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|+. +++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++.+||
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999974 367999999999999999999999999999999999999999999998765322 24577999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
+||++.+++.+|+.||+.+.............+++.++++.+++.. .++.+.+||||||||++|||||+.+|++|||||
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999986433211112233456778899999954 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|.
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999887665 48999999999999864 99999999999998874
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-48 Score=381.11 Aligned_cols=220 Identities=22% Similarity=0.246 Sum_probs=190.3
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ceEEEEcCccCCCCch
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--------QGEIWVLGGHPASIYH 160 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~--------sG~I~i~G~~~~~~~~ 160 (457)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.....
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 5899999999987 78999999999999999999999999999999999999998 9999999988754333
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
...++.++|+||++.+++.+||+||+.+..... +....+..+++.++++.+++.. .++++.+|||||||||+||+
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 344567999999987666799999998753211 1111233456778899999964 68999999999999999999
Q ss_pred Hhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecC
Q psy10858 236 AIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 236 ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs 304 (457)
||+ .+|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .||++++|++|++++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 499999999999999999999999998777655 899999999999996 599999999999999999
Q ss_pred hhhhhh
Q psy10858 305 PDGFKS 310 (457)
Q Consensus 305 ~~~l~~ 310 (457)
++++.+
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 988754
No 175
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-47 Score=380.20 Aligned_cols=223 Identities=20% Similarity=0.294 Sum_probs=191.5
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI-- 158 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~-- 158 (457)
..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++...
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 4578999999999987 789999999999999999999999999999999999864 4999999999876431
Q ss_pred chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHH
Q psy10858 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLS 232 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRls 232 (457)
.....++++||+||++.+++. ||.||+.+....++.. .....+++.++++.+++. ..++++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 112346789999999998875 9999999865544443 233445667778888762 257889999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999887754 6899999999999865 999999999999999999998765
Q ss_pred C
Q psy10858 312 Y 312 (457)
Q Consensus 312 ~ 312 (457)
.
T Consensus 272 ~ 272 (286)
T PRK14275 272 P 272 (286)
T ss_pred C
Confidence 3
No 176
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.9e-48 Score=372.90 Aligned_cols=204 Identities=27% Similarity=0.503 Sum_probs=178.2
Q ss_pred EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc-CCCC
Q psy10858 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP-QELA 175 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp-Q~~~ 175 (457)
++|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...++.+||++ |.+.
T Consensus 29 ~~~~~--~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYRE--VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcccEEEEcCCccc
Confidence 44555 78999999999999999999999999999999999999999999999998654322 23457899998 5677
Q ss_pred CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCC
Q psy10858 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD 254 (457)
Q Consensus 176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLD 254 (457)
+++.+|++||+.+...+++....+..+++..+++.+++.. .++++.+||||||||++||+||+++|++|||||||+|||
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 8889999999988766666666666667788899999954 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 255 PLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 255 p~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
+.+++.+++++..+++ .|.|||++||+++++.. ||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999877655 48999999999999865 9999999999998754
No 177
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-47 Score=371.83 Aligned_cols=222 Identities=19% Similarity=0.249 Sum_probs=188.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-----CCCCchh-
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHK- 161 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-----~~~~~~~- 161 (457)
++|+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+ +......
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 47999999999987 789999999999999999999999999999999999999999999999876 4332221
Q ss_pred ---hhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHH
Q psy10858 162 ---TAGSKVGYMPQELA--MFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 162 ---~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsL 233 (457)
..++.+||++|++. ++..+|+.+|+.+.....+ .........+.++++.+++. ..++.+.+|||||||||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 12457999999974 4566789999865332221 12223446678889999995 3688999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|||||||+|||+.+++.++++++...+ .|.|||+|||+++++.. ||++++|++|+++..|+++++...
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999877654 48999999999999975 999999999999999999988754
No 178
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-47 Score=377.55 Aligned_cols=223 Identities=20% Similarity=0.272 Sum_probs=192.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCc-h
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIY-H 160 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~-~ 160 (457)
+++|+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++.... .
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 468999999999987 8899999999999999999999999999999999999985 7999999998775421 2
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
...++.++|+||++.+|+ +|++||+.+.....+ .+..+...++.++++.+++.. +++.+.+|||||||||+||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 234678999999999887 899999987543332 344445556677788888842 4678999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+.+|++|||||||+|||+.+++.+++.++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~ 254 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPK 254 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 999999999999999999999999999999887765 5899999999999865 99999999999999999999876543
No 179
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=418.14 Aligned_cols=232 Identities=19% Similarity=0.208 Sum_probs=200.1
Q ss_pred cCceEEEeeEEEeCCC---------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858 87 EEADEGKNTEKEELKP---------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~---------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~ 157 (457)
.++|+++||++.|+.. ...+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4689999999999621 1469999999999999999999999999999999999999999999999988754
Q ss_pred Cch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHH
Q psy10858 158 IYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKR 229 (457)
Q Consensus 158 ~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQ 229 (457)
... ...+++|||+||++ .+++.+||.+|+.+....++. ...+..+++.++++.++|. . .++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 321 12456899999997 588999999999876555453 3445567788899999995 3 78999999999999
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
||+|||||+.+|++|||||||+|||+.++..++++++.++++ |.|||++|||++++.. ||||++|++|+|++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999998777654 9999999999999975 99999999999999999999
Q ss_pred hhhcCCcccHH
Q psy10858 308 FKSKYSMPKLS 318 (457)
Q Consensus 308 l~~~~~~~~l~ 318 (457)
++.....+...
T Consensus 551 i~~~p~~~~~~ 561 (623)
T PRK10261 551 VFENPQHPYTR 561 (623)
T ss_pred HhcCCCCHHHH
Confidence 87654433333
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.1e-48 Score=370.04 Aligned_cols=213 Identities=23% Similarity=0.312 Sum_probs=183.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus 5 ~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 468999999999987 789999999999999999999999999999999999999999999999987754433345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||+||++.+++ .|++||+.+....++... ..+++.++++.+++. . .++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999887 499999987554443221 234567889999995 3 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEe-CCeEEEecC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLY-KGRIIAQDS 304 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~-~GkI~~~gs 304 (457)
||||||+|||+.+++.++++++.+.+ .|.|||++||+++++..||++++|+ ++..+++|+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 99999999999999999999877654 4899999999999997799999995 555555554
No 181
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=376.70 Aligned_cols=222 Identities=21% Similarity=0.289 Sum_probs=189.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~ 159 (457)
.++++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. ..
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 468999999999987 789999999999999999999999999999999999997 699999999987642 12
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCC----C-CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKL----P-NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L----~-~~~~~~~~LSGGqkQRlsL 233 (457)
....++.+||+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++ . ..++++.+|||||||||+|
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 2334678999999999887 49999998765444433 22334445666666643 2 2578899999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||+.+|++|||||||+|||+.++..++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 9999999999999999999999999999999887755 7999999999999865 9999999999999999999887653
No 182
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=370.11 Aligned_cols=221 Identities=20% Similarity=0.274 Sum_probs=188.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--ch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--YH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~~ 160 (457)
++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|+++|.++... ..
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 4 KIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred ceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 57999999999987 789999999999999999999999999999999999975 4 599999999877421 22
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+++ .|+++|+.+.....+.. .+...+++.+.++.+++. ..++.+.+|||||||||+||
T Consensus 82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 234578999999999887 69999998765544432 222344556667777652 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. ||||++|++|+++..|++.++....
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999877755 5899999999999865 9999999999999999999887653
No 183
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-47 Score=381.00 Aligned_cols=237 Identities=24% Similarity=0.332 Sum_probs=207.6
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CceEEEEcCccCCCCchh
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-I----SQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p----~sG~I~i~G~~~~~~~~~ 161 (457)
.++++||+.+|... ...||+||||+|++||++||+|.||||||||.+.|+|+++ | .+|+|.++|+++...+.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999653 2579999999999999999999999999999999999997 3 679999999987665433
Q ss_pred ----hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC-C-CHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHH
Q psy10858 162 ----TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG-M-DESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKR 229 (457)
Q Consensus 162 ----~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g-~-~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQ 229 (457)
.+++.|+|+||++ +|.|-+||.+.+.-..+.++ . .+++..+++.++++.++++. ++.+|.+|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 3467899999998 68899999998877666543 4 46677888999999999974 48999999999999
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhh
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~ 307 (457)
||.||.||+.+|++||.||||++||...+.+|+++++.+++ .|.|+|++|||+..+. .||||+||.+|+|++.|+.++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999999999999877765 6999999999999885 599999999999999999999
Q ss_pred hhhcCCcccHHHHHHhhh
Q psy10858 308 FKSKYSMPKLSDVFYKIT 325 (457)
Q Consensus 308 l~~~~~~~~l~~~f~~~~ 325 (457)
++....+++...+.....
T Consensus 241 i~~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 241 IFKNPKHPYTRGLLNSLP 258 (316)
T ss_pred HhcCCCChHHHHHHHhCc
Confidence 999888777766665443
No 184
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-47 Score=409.55 Aligned_cols=217 Identities=19% Similarity=0.307 Sum_probs=193.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~ 166 (457)
++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....... .++.
T Consensus 10 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 10 PLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred ceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 57999999999987 78999999999999999999999999999999999999999999999998875433222 2357
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+++.+||+||+.+.... .....+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999875321 1234566788899999964 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999988877779999999999999965 99999999999999999988754
No 185
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-47 Score=372.61 Aligned_cols=220 Identities=20% Similarity=0.299 Sum_probs=189.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~ 160 (457)
.+|+++|++++|++ ..+++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 47999999999987 7899999999999999999999999999999999999985 58999999987642 122
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.+||+||++.+|+ +|++||+.+.....+ .++....+++.++++.+++. ..++.+.+|||||||||+||
T Consensus 84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 234568999999999887 899999987654433 23344455677788888772 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe-----CCeEEEecChhhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-----KGRIIAQDSPDGF 308 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~-----~GkI~~~gs~~~l 308 (457)
|||+.+|++|||||||+|||+.++..++++++.+++ ++|||++||+++++.. |||+++|+ +|++++.|+++++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 999999999999999999999999999999887754 6999999999999965 99999998 5999999999998
Q ss_pred hhc
Q psy10858 309 KSK 311 (457)
Q Consensus 309 ~~~ 311 (457)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14260 242 FSN 244 (259)
T ss_pred hcC
Confidence 654
No 186
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.8e-47 Score=371.62 Aligned_cols=217 Identities=22% Similarity=0.299 Sum_probs=188.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchhhh
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~~~ 163 (457)
.+|+++|++++| + +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++... ...
T Consensus 3 ~~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 3 QQIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred cEEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 378999999999 4 6799999999999999999999999999999999999999 999999999877521 222
Q ss_pred cCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHHHHHHHHh
Q psy10858 164 GSKVGYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 164 r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++.+||+||++. +.+.+|+.+++.+.+...+.... .+++.++++.+++.. .++.+.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 457999999984 44567999998765544444332 356778899999864 5889999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+.+|++|||||||+|||+.+++.++++++.+.+ .|.|||++||+++++. .|||+++|++|+++..|+++++.+.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999877654 4899999999999986 5999999999999999999998764
No 187
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-47 Score=372.37 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=191.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCC--Cch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPAS--IYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~--~~~ 160 (457)
.+|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. ...
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 47999999999987 68999999999999999999999999999999999999985 8999999987632 122
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
...++.++|+||++.+++ +|+.||+.+.....+. +..+..+++.++++.+++. ..++.+.+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 334678999999999887 8999999876544443 3334455677888888873 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeC-----CeEEEecChhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYK-----GRIIAQDSPDG 307 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~-----GkI~~~gs~~~ 307 (457)
|||+.+|++|||||||+|||+.+++.++++++.+++ .|+|||++||+++++.. ||||++|++ |+++..|++++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 999999999999999999999999999999877654 58999999999999965 999999999 99999999999
Q ss_pred hhhcC
Q psy10858 308 FKSKY 312 (457)
Q Consensus 308 l~~~~ 312 (457)
+.+..
T Consensus 243 ~~~~~ 247 (261)
T PRK14258 243 IFNSP 247 (261)
T ss_pred HHhCC
Confidence 87643
No 188
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-47 Score=370.49 Aligned_cols=219 Identities=26% Similarity=0.358 Sum_probs=188.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCCc--hh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASIY--HK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~~--~~ 161 (457)
--+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.... ..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3578999999987 789999999999999999999999999999999999986 47999999998764321 12
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
..++.+||+||++.+++. |+.||+.+....++. ......+.+.++++.+++.. .++.+.+|||||||||+||
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 346789999999998875 999999876444433 22334456778889999842 4678999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+.+|++|||||||+|||+.+++.+++.+..+. +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999988775 48999999999999865 999999999999999999988754
No 189
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-47 Score=373.72 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=188.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cch
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~~ 160 (457)
++|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++.. ...
T Consensus 9 ~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 9 TVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred eEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 58999999999987 789999999999999999999999999999999999986 489999999987642 122
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~ 235 (457)
...++++||++|++.+++ .|+.||+.+.....+... ...+++.++++.+++. ..++.+.+||||||||++|||
T Consensus 87 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 334678999999998887 499999987654433322 2334556667776662 257889999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe---------CCeEEEecCh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY---------KGRIIAQDSP 305 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~---------~GkI~~~gs~ 305 (457)
||+.+|++|||||||+|||+.+++.+++++..+.+ ++|||++||+++++.. |||+++|+ +|++++.|++
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 99999999999999999999999999999887755 5899999999999865 99999998 8999999999
Q ss_pred hhhhhcCC
Q psy10858 306 DGFKSKYS 313 (457)
Q Consensus 306 ~~l~~~~~ 313 (457)
+++.+...
T Consensus 244 ~~~~~~~~ 251 (264)
T PRK14243 244 EKIFNSPQ 251 (264)
T ss_pred HHHHhCCC
Confidence 99976543
No 190
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-47 Score=371.52 Aligned_cols=223 Identities=22% Similarity=0.308 Sum_probs=193.1
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------ccCCCCc
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPASIY 159 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G------~~~~~~~ 159 (457)
..++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++....
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 3478999999999998 8899999999999999999999999999999999999999997777665 3433222
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
....++.+||+||++.+++.+|++||+.+.....+. ++++..+++.++++.+++. ..++.+..||+|||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 234567899999999999999999999886544333 3445556778888899884 2578899999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||||+.+|++|||||||+|||+.+++.+++++..+.+ +.|||++||+++++. .||++++|++|++++.|+++++.+.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999877654 699999999999995 5999999999999999999988764
No 191
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.9e-47 Score=363.50 Aligned_cols=212 Identities=25% Similarity=0.359 Sum_probs=185.4
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~ 163 (457)
.++++|+++.|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999742 1579999999999999999999999999999999999999999999999987753321 124
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++.+||+||++.+++.+|+.||+.+....++ ...++..+++.++++.+++.. .++.+.+||+|||||++|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999998765443 445556667888999999954 68899999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRII 300 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~ 300 (457)
++|||||||+|||+.++..++++++.+++ .|+|||++||+++....||++++|++|+++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEEC
Confidence 99999999999999999999999877665 589999999999876679999999999863
No 192
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.2e-47 Score=364.72 Aligned_cols=212 Identities=26% Similarity=0.365 Sum_probs=182.2
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~ 163 (457)
.+.++|++++|.+. .+.+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|.++.. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHh
Confidence 57799999999763 2689999999999999999999999999999999999999 999999999987642 245
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC---CCHHHHHHHHHH-HHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG---MDESIWLFQMRK-YSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g---~~~~~~~~~~~~-ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
++.+||+||++.+++.+||+||+.+...... ........++.+ +++.+++.. .++.+.+|||||||||+|||||+
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 6789999999999999999999988654332 122222233444 788888854 67889999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh-hHHh-ccCeEEEEeCCeEEEec
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI-EEAN-DASEVAFLYKGRIIAQD 303 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~-~ea~-~~dri~im~~GkI~~~g 303 (457)
.+|++|||||||+|||+.++..+++++..+.++|.|||++||++ +++. .||++++|++|++++.|
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999887766799999999998 5775 59999999999998765
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.8e-47 Score=373.36 Aligned_cols=223 Identities=24% Similarity=0.317 Sum_probs=192.8
Q ss_pred CceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858 88 EADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~ 160 (457)
++|+++|++++|+.+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 369999999999731 2679999999999999999999999999999999999999999999999987754322
Q ss_pred ---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHH
Q psy10858 161 ---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 161 ---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRls 232 (457)
...++.+||+||++ .+++..|+.+|+.+... ..+........++.++++.+++. . .++.+.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 23457899999997 46677999999876433 23444445556788899999995 3 68999999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||+++|++|||||||+|||+.+++.++++++.+.++ |.|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 999999999999999999999999999999998776654 8999999999999975 99999999999999999998864
No 194
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=360.03 Aligned_cols=232 Identities=25% Similarity=0.370 Sum_probs=210.3
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-------- 158 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-------- 158 (457)
.++++++|+.|+||. ..+|++||++-.+|+++.|+|.|||||||+|+||.=+..|+.|.|.++|+.+...
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 368999999999999 8999999999999999999999999999999999999999999999999775311
Q ss_pred --c---hhhhcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHH
Q psy10858 159 --Y---HKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRL 231 (457)
Q Consensus 159 --~---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRl 231 (457)
+ ....|.++|+|||+++||..|||.||+.- .....|.++.+..++++.++..+|+.. .+.+|..||||||||+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 1 12356789999999999999999999864 345678999999999999999999954 7899999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||+.+|+++++|||||+|||....++++.++.+.++|+|.+++||.|..|+. +++|+++++|.|-++|+|++++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence 99999999999999999999999999999999999999999999999999999987 89999999999999999999998
Q ss_pred cCCcccHHHH
Q psy10858 311 KYSMPKLSDV 320 (457)
Q Consensus 311 ~~~~~~l~~~ 320 (457)
.+..+.+.+.
T Consensus 242 nP~S~RlkqF 251 (256)
T COG4598 242 NPQSPRLKQF 251 (256)
T ss_pred CCCCHHHHHH
Confidence 7665555543
No 195
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.4e-47 Score=365.79 Aligned_cols=204 Identities=24% Similarity=0.310 Sum_probs=178.3
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchhhhcCcEEEEcCCCC--CCCC
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHKTAGSKVGYMPQELA--MFGE 179 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~--L~~~ 179 (457)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...++.+||++|++. +++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999877532 222357999999985 5567
Q ss_pred CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC---C-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP---N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 180 lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~---~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp 255 (457)
+|+.+|+.+.....+.......+++.++++.+++. . .++.+.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 89999997765544443444556788899999996 2 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 256 LVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 256 ~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+++.+++++..+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999877665 48999999999999965 999999999999999999998754
No 196
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1e-46 Score=366.96 Aligned_cols=218 Identities=22% Similarity=0.253 Sum_probs=186.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhhc-
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTAG- 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~r- 164 (457)
++|+++|++++|++ +.+|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++........+
T Consensus 6 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 6 PILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred ceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 58999999999987 7899999999999999999999999999999999998 579999999999887543322222
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhc----CC---CHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHH
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIY----GM---DESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFT 234 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~----g~---~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA 234 (457)
..++|++|++.+++.+|+.+++.+..... +. ...+..+++.++++.+++. . .++.+. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 25899999999999999999997653321 11 1223345677888999995 3 578887 5999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~ 307 (457)
+||+++|++|||||||+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|++++.|+++.
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999988776679999999999999864 89999999999999998873
No 197
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.3e-47 Score=368.59 Aligned_cols=218 Identities=24% Similarity=0.321 Sum_probs=180.3
Q ss_pred eEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 90 DEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
++++|++++|++. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+|
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999752 256999999999999999999999999999999999999999999999998765433334456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
|++|++.+++ .||+||+.+..... ..+..... +..+++.+ ++.. .++.+.+|||||||||+||+||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998876 69999998753322 11221111 12222333 3322 5678899999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|++|||||||+|||+.+++.+++.++.+. +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999999988775 79999999999999988999999999999999998887654
No 198
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-47 Score=365.95 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=179.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus 3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 7899999999741 469999999999999999999999999999999999999999999999987654333345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+||++.+++. |++||+.++.... ......+ .+..+++.+ ++.. .++.+.+|||||||||+||+||+.+|
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988875 9999998753221 1111111 112233333 3322 46778999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.+++++..+. +|+|||++||+++++..||++++|++|+++..|+.+++.++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999987764 58999999999999877999999999999999988877654
No 199
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-47 Score=359.67 Aligned_cols=200 Identities=26% Similarity=0.295 Sum_probs=177.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...+++++
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 5899999999987 78999999999999999999999999999999999999999999999998765322 23456899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|++|++.+++.+|+.||+.++...++. ...+++.++++.+++.. .++++.+||||||||++||+||+++|++||||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999887655442 22356778899999954 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhcc-CeEEEE
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA-SEVAFL 294 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~-dri~im 294 (457)
|||+|||+.+++.++++++..+++|.|||++||+++++..| +|++++
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999887767789999999999999775 677666
No 200
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-47 Score=415.04 Aligned_cols=225 Identities=19% Similarity=0.288 Sum_probs=195.4
Q ss_pred cCceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--------
Q psy10858 87 EEADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA-------- 156 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~-------- 156 (457)
.++|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 4689999999999632 257999999999999999999999999999999999999999999999886431
Q ss_pred --CCch---hhh-cCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCC
Q psy10858 157 --SIYH---KTA-GSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYL 223 (457)
Q Consensus 157 --~~~~---~~~-r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~L 223 (457)
.... ... +++||||+|++ .+++.+||.||+.+..... +.+..+..+++.++++.++|+. +++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 1111 112 35799999998 6888899999999876653 6666667778889999999953 58999999
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~ 301 (457)
||||||||+||+||+.+|+||||||||+|||+.+++.++++++.+.++ |+|||++|||++++.. ||||++|++|++++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 999999999999999999999999999999999999999998877654 9999999999999865 99999999999999
Q ss_pred ecChhhhhhc
Q psy10858 302 QDSPDGFKSK 311 (457)
Q Consensus 302 ~gs~~~l~~~ 311 (457)
.|+++++...
T Consensus 250 ~g~~~~~~~~ 259 (623)
T PRK10261 250 TGSVEQIFHA 259 (623)
T ss_pred cCCHHHhhcC
Confidence 9999988654
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-47 Score=363.98 Aligned_cols=206 Identities=23% Similarity=0.395 Sum_probs=172.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++.++.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++........++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 78999999997533569999999999999999999999999999999999999999999999987644333334568999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCC-----------CCCCCChhHHHHHHHHHHh
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LER-----------PVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~-----------~~~~LSGGqkQRlsLA~AL 237 (457)
++|++.+++ .|+.||+.+.... .. ...+.++++.+++.. .++ .+.+|||||||||+|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998886 6999999764321 11 123445566666632 333 3579999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g 303 (457)
+.+|++|||||||+|||+.+++.++++++.+.++ +|||++||++++++.||++++|++|++++.|
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999998877554 8999999999988779999999999997653
No 202
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.1e-47 Score=406.72 Aligned_cols=225 Identities=23% Similarity=0.286 Sum_probs=194.0
Q ss_pred cCceEEEeeEEEeCC---------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858 87 EEADEGKNTEKEELK---------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~---------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~ 157 (457)
.++|+++|++++|++ +.+.+|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 458999999999962 12579999999999999999999999999999999999995 89999999987753
Q ss_pred Cchh---hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHH
Q psy10858 158 IYHK---TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQK 228 (457)
Q Consensus 158 ~~~~---~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqk 228 (457)
.+.. ..++++||+||++ .+++.+||.||+.+....++ .+..+..+++.++++.+++. . .++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 3211 2356799999997 48888999999987654332 34444556788899999995 3 6899999999999
Q ss_pred HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
|||+||+||+.+|++|||||||+|||+.+++.++++++.++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999998877654 8999999999999965 9999999999999999999
Q ss_pred hhhhcC
Q psy10858 307 GFKSKY 312 (457)
Q Consensus 307 ~l~~~~ 312 (457)
++.+..
T Consensus 512 ~~~~~~ 517 (529)
T PRK15134 512 RVFAAP 517 (529)
T ss_pred HHhcCC
Confidence 987643
No 203
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-47 Score=354.06 Aligned_cols=217 Identities=27% Similarity=0.333 Sum_probs=191.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
|+.++++.++|+. .+ =..+++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++.....+ ..|-|+
T Consensus 1 ~l~L~~V~~~y~~--~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGH--LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVS 74 (231)
T ss_pred CccccceEEeeCc--ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChh
Confidence 4678999999987 32 25889999999999999999999999999999999999999999998865433 346799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
++||+.+||..+||.+|+.++..-. ++ ..+.+++++.++.++||.. .++.|.+|||||||||+|||+|+.+-+||+|
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 9999999999999999998764321 22 2445677888999999965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+|+|||..|.++..++..+ .+++.|++||||..+++.. +||++++++|+|.+.|+.+++++..
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999996555 4669999999999999976 8999999999999999999988754
No 204
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=365.20 Aligned_cols=221 Identities=24% Similarity=0.348 Sum_probs=190.7
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--chh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--YHK 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~~~ 161 (457)
+++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|.++... ...
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 5899999999987 789999999999999999999999999999999999864 4899999999876431 223
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~ 235 (457)
..++++||+||++.+|+. |+.||+.+....++. +.+...+++.++++.+++. ..++.+.+||||||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 456789999999998875 999999876544433 2344566778888888873 247889999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. ||++++|++|++++.|+++++.....
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPK 237 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999999988775 48999999999999875 89999999999999999999865533
No 205
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=371.70 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=187.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~ 159 (457)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 458999999999987 7899999999999999999999999999999999999863 69999999987642 12
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA 234 (457)
....++++||+||++.+++. ||.||+.+.....+... ...+.+.++++.+++. ..++++.+|||||||||+||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 22346789999999998874 99999987654433322 2234455667777762 25788999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe---------CCeEEEecC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY---------KGRIIAQDS 304 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~---------~GkI~~~gs 304 (457)
|||+.+|++|||||||+|||+.+++.+++++..+.+ +.|||++||+++++.. |||+++|+ +|++++.|+
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 999999999999999999999999999999887754 7999999999999965 99999997 899999999
Q ss_pred hhhhhhcC
Q psy10858 305 PDGFKSKY 312 (457)
Q Consensus 305 ~~~l~~~~ 312 (457)
++++....
T Consensus 253 ~~~~~~~~ 260 (274)
T PRK14265 253 TEQMFGSP 260 (274)
T ss_pred HHHHHhCC
Confidence 99987643
No 206
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=368.10 Aligned_cols=221 Identities=20% Similarity=0.302 Sum_probs=191.4
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI-- 158 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~-- 158 (457)
..+.+.+++++++|++ +.+|+|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|+++|.++...
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 3578999999999988 8899999999999999999999999999999999999986 799999999876421
Q ss_pred chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHH
Q psy10858 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsL 233 (457)
.....++.+||+||++.++ .+|+.||+.+.....+.. .+..+++.++++.+++.. .++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 2223467899999999988 599999998876544432 334556778888888732 357889999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe--------CCeEEEecC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY--------KGRIIAQDS 304 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~--------~GkI~~~gs 304 (457)
||||+++|++|||||||+|||+.+++.++++++.++ +++|||++||+++++.. |||+++|+ +|++++.|+
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence 999999999999999999999999999999988775 47999999999999865 99999995 899999999
Q ss_pred hhhhhhc
Q psy10858 305 PDGFKSK 311 (457)
Q Consensus 305 ~~~l~~~ 311 (457)
++++.+.
T Consensus 240 ~~~~~~~ 246 (261)
T PRK14263 240 TAQIFQN 246 (261)
T ss_pred HHHHHhC
Confidence 9998764
No 207
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=380.56 Aligned_cols=226 Identities=23% Similarity=0.357 Sum_probs=192.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~ 159 (457)
..+|+++|++++|.+....+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++... .
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999996433679999999999999999999999999999999999986 5799999999987532 2
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHH-HHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESI-WLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~-~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL 233 (457)
....++++||+||++.+|. .|++||+.|.....+...++ ..+.+..+++.+++. ..++++.+|||||||||+|
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 2345678999999999885 79999998765444444333 334466777777763 2578999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||+.+|+||||||||+|||+.+.+.+++.++.+.+ ++|||++||+++++.. ||||++|++|++++.|+++++.+..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999887755 6999999999999976 9999999999999999999998754
Q ss_pred Cc
Q psy10858 313 SM 314 (457)
Q Consensus 313 ~~ 314 (457)
..
T Consensus 316 ~~ 317 (329)
T PRK14257 316 KN 317 (329)
T ss_pred Cc
Confidence 43
No 208
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.6e-47 Score=401.97 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=191.3
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchh-hhcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHK-TAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~-~~r~ 165 (457)
+|+++|++++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++...... ..++
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4789999999987 7899999999999999999999999999999999999987 799999999887543322 2346
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhc--C--CCHHHHHHHHHHHHhHcCCCC-C-CCCCCCCChhHHHHHHHHHHhhc
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIY--G--MDESIWLFQMRKYSHVLKLPN-L-ERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~--g--~~~~~~~~~~~~ll~~l~L~~-~-~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
.+||+||++.+++.+||.||+.+..... + ...+...+++.++++.+++.. . ++++++|||||||||+||+||+.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 7999999999999999999998754332 1 334445567888999999964 3 57799999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+|++|++|+++..++++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999988877779999999999999975 999999999999999988764
No 209
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-46 Score=403.38 Aligned_cols=224 Identities=22% Similarity=0.288 Sum_probs=193.9
Q ss_pred CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCch
Q psy10858 88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~~ 160 (457)
++++++|++++|+++ .+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|.++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999999731 25799999999999999999999999999999999999986 79999999988754322
Q ss_pred h---h-hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHH
Q psy10858 161 K---T-AGSKVGYMPQELA--MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKR 229 (457)
Q Consensus 161 ~---~-~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQ 229 (457)
. . .++++||+||++. +++.+|+.+++.+.... .+.+..+..+++.++++.+++.. .++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 1 1 2357999999975 67778999998765433 25555566778889999999954 48899999999999
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
||+|||||+++|++|||||||+|||+.+++.++++++.++++ |+|||+|||+++++.. ||||++|++|++++.|++++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998777654 8999999999999865 99999999999999999998
Q ss_pred hhhc
Q psy10858 308 FKSK 311 (457)
Q Consensus 308 l~~~ 311 (457)
+...
T Consensus 244 ~~~~ 247 (529)
T PRK15134 244 LFSA 247 (529)
T ss_pred HhhC
Confidence 8654
No 210
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=367.09 Aligned_cols=229 Identities=21% Similarity=0.301 Sum_probs=192.3
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC----
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS---- 157 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~---- 157 (457)
..+|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 467999999999987 7899999999999999999999999999999999999875 79999999876531
Q ss_pred CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH-HHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHH
Q psy10858 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRL 231 (457)
Q Consensus 158 ~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~-~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRl 231 (457)
......++.+||+||++.+++. |++||+.+.....+.... ...+++.++++.+++. ..++.+.+|||||||||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 1122346789999999999885 999999876544444332 2345566777777762 24788999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||+.+|++|||||||+|||+.+++.+++.++.+.+ +.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999887754 699999999999996 499999999999999999998875
Q ss_pred cCCcccHHH
Q psy10858 311 KYSMPKLSD 319 (457)
Q Consensus 311 ~~~~~~l~~ 319 (457)
....+.+++
T Consensus 250 ~~~~~~~~~ 258 (265)
T PRK14252 250 KPKNKQTED 258 (265)
T ss_pred CCCCHHHHH
Confidence 433334444
No 211
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=401.01 Aligned_cols=216 Identities=21% Similarity=0.306 Sum_probs=190.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~ 166 (457)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.... ....++.
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 58999999999987 78999999999999999999999999999999999999999999999998774322 1234578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhh--hcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGM--IYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~--l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
|||+||++.+++.+||.||+.+... .++ .+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987532 223 234455667888999999964 688999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~ 305 (457)
+|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..+++
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999988777779999999999999965 999999999999887654
No 212
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-46 Score=402.20 Aligned_cols=223 Identities=23% Similarity=0.330 Sum_probs=190.3
Q ss_pred cCceEEEeeEEEeCC---CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CccC---CCCc
Q psy10858 87 EEADEGKNTEKEELK---PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL-GGHP---ASIY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~---~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~-G~~~---~~~~ 159 (457)
.++|+++|++++|++ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+. ....
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 458999999999952 22579999999999999999999999999999999999999999999996 6432 2111
Q ss_pred ---hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------CCCCCCCCChhHHHH
Q psy10858 160 ---HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------LERPVKYLSGGQKRR 230 (457)
Q Consensus 160 ---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------~~~~~~~LSGGqkQR 230 (457)
....++++||+||++.+++.+||.||+.+.... +.+.+...+++.++++.+++.. .++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 112346799999999999999999999875332 3344444566788899999953 589999999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|+|||||+.+|++|||||||+|||+.+++.++++++.+++ .|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999877755 48999999999999965 999999999999999998887
Q ss_pred hh
Q psy10858 309 KS 310 (457)
Q Consensus 309 ~~ 310 (457)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 54
No 213
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-46 Score=367.32 Aligned_cols=212 Identities=23% Similarity=0.302 Sum_probs=183.4
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv 170 (457)
+++||++. .+|+|+||+|++||+++|+|+||||||||+++|+|++++ +|+|+++|+++........++.+||+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56777774 269999999999999999999999999999999999964 99999999887544433445679999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc-------CCc
Q psy10858 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH-------KPQ 242 (457)
Q Consensus 171 pQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~-------~P~ 242 (457)
||++.+++.+|+++|+.++... +.+.++..+++.++++.+++.. .++++.+||||||||++||+||+. +|+
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ 153 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ 153 (248)
T ss_pred cccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCC
Confidence 9999888889999999876432 2333444567788999999964 689999999999999999999997 679
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 154 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 999999999999999999999988776679999999999999864 99999999999999999988754
No 214
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=371.03 Aligned_cols=228 Identities=22% Similarity=0.308 Sum_probs=187.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+
T Consensus 5 ~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 5 AGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred ceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 369999999999631 679999999999999999999999999999999999999999999999987632 1223469
Q ss_pred EEEcCCCCCC--CCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 168 GYMPQELAMF--GELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 168 GyvpQ~~~L~--~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
||+||++.++ ...++.+++.+... .++.......+++.++++.+++.. .++++.+||||||||++||+||+.+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998653 23478888764311 111222334456677889999954 7899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+++++ +|+++..|+++++.+. ..+++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~~---~~~~~ 236 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFTA---ENLEL 236 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccCH---HHHHH
Confidence 99999999999999999999999988877779999999999999864 9999777 8999999999887532 34555
Q ss_pred HHHh
Q psy10858 320 VFYK 323 (457)
Q Consensus 320 ~f~~ 323 (457)
.|..
T Consensus 237 ~~~~ 240 (272)
T PRK15056 237 AFSG 240 (272)
T ss_pred Hhcc
Confidence 5543
No 215
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-46 Score=397.58 Aligned_cols=236 Identities=23% Similarity=0.303 Sum_probs=205.1
Q ss_pred ccCceEEEeeEEEeCC---------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858 86 EEEADEGKNTEKEELK---------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~---------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~ 156 (457)
.+++++++||+|+|.. +...|++||||+|.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 5689999999999983 1257999999999999999999999999999999999999999999999998722
Q ss_pred C--CchhhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHH
Q psy10858 157 S--IYHKTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKR 229 (457)
Q Consensus 157 ~--~~~~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQ 229 (457)
. ......++++-++||++ +|.|.+||.+++.....+++. ...+.++++.++++.++|+. ++++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 1 11223456788888887 799999999999887776543 34566678999999999964 79999999999999
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
|++|||||+.+|++||+|||||.||+..+..+.+++..++++ |.|.|++||||..++. ||||++|++|+|++.|+.+.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999997766554 9999999999999986 99999999999999999999
Q ss_pred hhhcCCcccHHHHH
Q psy10858 308 FKSKYSMPKLSDVF 321 (457)
Q Consensus 308 l~~~~~~~~l~~~f 321 (457)
+++....++...+.
T Consensus 517 v~~~p~h~Ytr~L~ 530 (539)
T COG1123 517 VFENPQHPYTRKLL 530 (539)
T ss_pred HhcCCCChHHHHHH
Confidence 98876666555444
No 216
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=400.43 Aligned_cols=216 Identities=20% Similarity=0.283 Sum_probs=189.7
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEEEE
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYM 170 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IGyv 170 (457)
++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ...++++||+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999987 789999999999999999999999999999999999999999999999988753322 2335679999
Q ss_pred cCCCCCCCCCCHHHHHHHhhh-hcC--CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 171 PQELAMFGELTIKETLNFFGM-IYG--MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 171 pQ~~~L~~~lTV~EnL~~~~~-l~g--~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||++.+++.+||+||+.+... ..+ .+.++..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999987532 222 233444567888999999964 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
||||+|||+.+++.++++++.+++.|+|||++||+++++.. |||+++|++|++++.|+++++.
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999988877779999999999999965 9999999999999999987763
No 217
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-46 Score=361.64 Aligned_cols=217 Identities=22% Similarity=0.321 Sum_probs=180.1
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++........++.+||
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999631 569999999999999999999999999999999999999999999999987754443445678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
++|++.+++ .|+.||+.+.... .+...... .+.+.++.+ ++.. .++++.+|||||||||+||+||+.+|
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999885 6999999875321 12222111 112222333 2322 46678999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.+++++..+.+ |+|||++||+++++..||++++|++|+++..|+++++...
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999887766 9999999999999977999999999999999998887653
No 218
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-46 Score=402.10 Aligned_cols=220 Identities=24% Similarity=0.353 Sum_probs=190.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcC---------------
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLG--------------- 152 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G--------------- 152 (457)
|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|++ +|++|+|+++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999987 78999999999999999999999999999999999997 79999999972
Q ss_pred --------ccCC-------CCc---hhhhcCcEEEEcCC-CCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC
Q psy10858 153 --------GHPA-------SIY---HKTAGSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213 (457)
Q Consensus 153 --------~~~~-------~~~---~~~~r~~IGyvpQ~-~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L 213 (457)
.++. ... ....++.+||+||+ +.+++.+||+||+.+.....+.+.++..+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 2110 000 11235679999997 6788889999999886655666666666788899999999
Q ss_pred CC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCe
Q psy10858 214 PN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASE 290 (457)
Q Consensus 214 ~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dr 290 (457)
.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||+||||++++.. |||
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 65 6889999999999999999999999999999999999999999999999877644 59999999999999965 999
Q ss_pred EEEEeCCeEEEecChhhhhhc
Q psy10858 291 VAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 291 i~im~~GkI~~~gs~~~l~~~ 311 (457)
+++|++|+++..|+++++...
T Consensus 239 i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEEeCCEEeeecCHHHHHHH
Confidence 999999999999998887653
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-46 Score=359.69 Aligned_cols=206 Identities=27% Similarity=0.364 Sum_probs=174.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 78999999997533579999999999999999999999999999999999999999999999987754443445678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----------C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----------N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----------~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
+||++.+++ .|++||+.++.. ...+ ++.++++.+++. . .++.+.+||||||||++|||||
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE---YSDE----ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC---CCHH----HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 999999876 599999975432 2222 223333333332 1 3568899999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs 304 (457)
+++|++|||||||+|||+.+++.++++++.+. ++.|||++||+++++..||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999988764 4689999999999997799999999999998775
No 220
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.1e-46 Score=360.92 Aligned_cols=218 Identities=24% Similarity=0.286 Sum_probs=183.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh-hcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT-AGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~-~r~ 165 (457)
||+++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++...+... .+.
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 5899999999987 78999999999999999999999999999999999995 699999999998775433222 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhh-h--c-C---CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHHH
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGM-I--Y-G---MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFTI 235 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l--~-g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA~ 235 (457)
.++|++|++.+++.+|+.+++.+... + . . .......+++.++++.++++ . .++.+. +|||||||||+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 79999999998888887776643211 1 1 1 11223355677788888885 3 566675 89999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l 308 (457)
||+++|++|||||||+|||+.+++.+.++++.++++|+|||++||+++++.. +|++++|++|+++..|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999988777778999999999999875 799999999999999988754
No 221
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-46 Score=363.04 Aligned_cols=197 Identities=24% Similarity=0.323 Sum_probs=172.8
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ...+|+||++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-----PDRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hhheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999998775322 1358999999999999999999
Q ss_pred HHhhh--hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 187 NFFGM--IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 187 ~~~~~--l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
.+... ..+.......+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 87532 123444555666788999999964 688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 264 LLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 264 ~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
++..+.+ .|+|||++||+++++.. ||++++|++|++++.|++.++
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9777655 48999999999999865 999999999999998876655
No 222
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-46 Score=356.73 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=178.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
+++|+++|++++|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~ 83 (214)
T PRK13543 9 PPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRF 83 (214)
T ss_pred cceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhc
Confidence 468999999999987 7899999999999999999999999999999999999999999999999877532 23457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
++|++|++.+++.+|+.||+.+....++.. ..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred eEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999998865544432 2345667888899854 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK 296 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~ 296 (457)
|||||+|||+.+++.++++++...++|.|||++||+++++.. |||+++|..
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999988777779999999999999965 999999864
No 223
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.9e-46 Score=357.79 Aligned_cols=206 Identities=24% Similarity=0.259 Sum_probs=176.4
Q ss_pred ceEEEeeEEEeCC----C-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC--c--cCCCCc
Q psy10858 89 ADEGKNTEKEELK----P-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--G--HPASIY 159 (457)
Q Consensus 89 ~Iei~nlsk~yg~----~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G--~--~~~~~~ 159 (457)
||+++|++++|+. + +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++| . ++....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5889999999963 1 14799999999999999999999999999999999999999999999984 2 332222
Q ss_pred hh----hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHH
Q psy10858 160 HK----TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 160 ~~----~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsL 233 (457)
.. ..++++||+||++.+++.+||.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 11 124579999999999999999999987655455555555667788899999954 478999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEE
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFL 294 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im 294 (457)
|+||+.+|++|||||||+|||+.+++.+++.++.++++|+|||++||+++++. .|||++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999998887777999999999999986 59998876
No 224
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-46 Score=372.55 Aligned_cols=231 Identities=20% Similarity=0.297 Sum_probs=192.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~ 159 (457)
..+|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++... .
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 457999999999987 789999999999999999999999999999999999986 6899999999876431 1
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc------------CCCH-HHHHHHHHHHHhHcCCC-----CCCCCCC
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY------------GMDE-SIWLFQMRKYSHVLKLP-----NLERPVK 221 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~------------g~~~-~~~~~~~~~ll~~l~L~-----~~~~~~~ 221 (457)
....++++||+||++.+++ .||+||+.+..... +... ....+++.++++.+++. ..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 2234678999999998887 59999998754321 1221 22345677788888873 2478899
Q ss_pred CCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeE-EEEeCCeE
Q psy10858 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEV-AFLYKGRI 299 (457)
Q Consensus 222 ~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri-~im~~GkI 299 (457)
+|||||||||+||+||+++|+||||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+ ++|++|++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 9999999999999999999999999999999999999999999888765 5899999999999865 9996 57899999
Q ss_pred EEecChhhhhhcCCcccHHHHH
Q psy10858 300 IAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 300 ~~~gs~~~l~~~~~~~~l~~~f 321 (457)
++.|+++++.+......+.+.|
T Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~ 300 (305)
T PRK14264 279 VEYDDTDKIFENPESQRVEDYI 300 (305)
T ss_pred EEeCCHHHHHhCcccHHHHHHh
Confidence 9999999887654334444433
No 225
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3e-46 Score=353.92 Aligned_cols=203 Identities=22% Similarity=0.297 Sum_probs=173.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|+..+..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999985324799999999999999999999999999999999999999999999999877544333456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||+||++.+++ .|++||+.++. ..... .+.+.++ .++++.+||||||||++|||||+.+|++||||
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~---~~~~~----~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllD 150 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFD---EYSDE----EIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccC---CCCHH----HHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 99999998886 59999997542 12221 1223332 36789999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~ 305 (457)
|||+|||+.+++.++++++.+. +|.|+|++||+++++..||++++|++|+++..|++
T Consensus 151 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999987764 58999999999999877999999999999988764
No 226
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-47 Score=356.73 Aligned_cols=229 Identities=22% Similarity=0.273 Sum_probs=204.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++..+ +.+|++|||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++......+..++-+
T Consensus 1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 6899999999988 89999999999999999999999999999999999999999999999999988877777778899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------ 239 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------ 239 (457)
++||+..+-+.+||+|.+.++..-++. ...+..+.+++++...++.. ..+...+|||||||||.+||.|++
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 999999997789999999998766643 22344555777888888865 688899999999999999999985
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~ 318 (457)
++++|+||||||+||+..+..++++.+.+.++|..|+.+-||+|.+. +||||++|++||+++.|+|+++++. +.++
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~---Etl~ 235 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD---ETLE 235 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH---HHHH
Confidence 45699999999999999999999998888888999999999999985 5999999999999999999999864 6777
Q ss_pred HHHH
Q psy10858 319 DVFY 322 (457)
Q Consensus 319 ~~f~ 322 (457)
.+|-
T Consensus 236 ~vyg 239 (259)
T COG4559 236 RVYG 239 (259)
T ss_pred HHhC
Confidence 7775
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=400.30 Aligned_cols=222 Identities=20% Similarity=0.341 Sum_probs=190.4
Q ss_pred cCceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCc-hhhh
Q psy10858 87 EEADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIY-HKTA 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~-~~~~ 163 (457)
.++|+++|++++|+. +++.+++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++.... ....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 357999999999942 12579999999999999999999999999999999999998 59999999998774322 1233
Q ss_pred cCcEEEEcCCC---CCCCCCCHHHHHHHhh--hhcC---CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858 164 GSKVGYMPQEL---AMFGELTIKETLNFFG--MIYG---MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~--~l~g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL 233 (457)
++.+||+||++ .+++.+||.||+.+.. ...+ .+.....+++.++++.+++. . .++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 56799999996 4788899999998643 1222 13334456688899999995 3 689999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|+||+.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999988877779999999999999965 999999999999999988776
No 228
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.5e-46 Score=360.29 Aligned_cols=210 Identities=22% Similarity=0.290 Sum_probs=176.8
Q ss_pred ccCceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 86 EEEADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
...+++++|++++|++. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999752 14699999999999999999999999999999999999999999999999876543333456
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHH-----HHHHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-----LFQMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~-----~~~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~A 236 (457)
+.++|++|++.+++ .||+||+.+..... ..... ...+.++++.+ ++.. .++++.+|||||||||+||+|
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 78999999998876 59999998643221 11111 11245667777 6643 688899999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
|+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++..||++++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999877654 6999999999999977999999999974
No 229
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.3e-46 Score=359.14 Aligned_cols=200 Identities=25% Similarity=0.303 Sum_probs=175.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
+.+++++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~------------ 88 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL------------ 88 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh------------
Confidence 788999999998 899999999999999999999999999999999999999999999999975421
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
..+...+++.+||+||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+++|++|||||
T Consensus 89 ~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 89 LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1112345567999999988766566555555667788889999954 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
||+|||+.+++.+++.++.++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999987776678999999999999865 9999999999998764
No 230
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-46 Score=352.89 Aligned_cols=198 Identities=27% Similarity=0.363 Sum_probs=175.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.. .. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 6899999999987 789999999999999999999999999999999999999999999999987532 11 457899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|++|++.+++.+||.||+.+....++... +++.++++.+++.. .++++++||||||||++||+||+.+|++||||
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEE----LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcH----HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999988889999999987665544322 34677889999954 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
|||+|||+.+++.++++++...++|+|||++||+++++.. |+++.+..
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999988766779999999999999987 88877743
No 231
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.7e-46 Score=397.22 Aligned_cols=212 Identities=20% Similarity=0.234 Sum_probs=185.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++........++.+|
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 6999999999987 77999999999999999999999999999999999999999999999887764333233456799
Q ss_pred EEcCCCCC--C-C-----CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 169 YMPQELAM--F-G-----ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 169 yvpQ~~~L--~-~-----~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|++|++.+ + . .+|++|++.+. ....+++.++++.+++.. .++++.+|||||||||+||+||+.
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99998653 1 1 46888887532 123456778899999964 789999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999988877779999999999999965 99999999999999999988764
No 232
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.5e-46 Score=344.32 Aligned_cols=173 Identities=28% Similarity=0.450 Sum_probs=157.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++.+..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........+++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997533569999999999999999999999999999999999999999999999988765444445678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
++|++.+++. |++||+ ||||||||++|||||+.+|++||||||
T Consensus 81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999988874 999987 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
|+|||+.+++.++++++.++++|+|||++||+++++..||++++|++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999988777679999999999999877999999999974
No 233
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.9e-46 Score=369.74 Aligned_cols=212 Identities=24% Similarity=0.344 Sum_probs=183.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|.++...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++........+++|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999995333679999999999999999999999999999999999998 78999999988765554556789999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCC-----------CChhHHHHHHHHHHh
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKY-----------LSGGQKRRLSFTIAI 237 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~-----------LSGGqkQRlsLA~AL 237 (457)
+||++.+|+. |+++|+..+.. ... +++.++++.++|.. .++++.. ||||||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYGK---WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhccC---CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999874 99999964321 222 23556677788743 4556655 999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+.+|+||||||||++||+.+++.+.+.++.. .+++|||++||+++++..||||++|++|+++..|+|+++...
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 9999999999999999999999999998765 358999999999999877999999999999999999999874
No 234
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-45 Score=361.75 Aligned_cols=202 Identities=27% Similarity=0.409 Sum_probs=176.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 47999999999987 7899999999999999999999999999999999999999999999875 1369
Q ss_pred EEEcCCCCCCCCC--CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 168 GYMPQELAMFGEL--TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 168 GyvpQ~~~L~~~l--TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
||+||++.+++.+ |+.+++.+.. +.. .+++.++++.+++.. .++++.+|||||||||+||+||+++|++|
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred EEeccccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999887764 7777765321 222 234667888899965 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|+ |++++.|+++++.+
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~ 209 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL 209 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence 999999999999999999998776655 8999999999999864 99999996 57999999988764
No 235
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.4e-46 Score=349.97 Aligned_cols=196 Identities=23% Similarity=0.275 Sum_probs=172.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 578999999987 78999999999999999999999999999999999999999999999998764322 345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
++|++.+++.+|++||+.++.... ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999998999999998753211 2345678888999964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEE
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFL 294 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im 294 (457)
||+|||+.+++.++++++..+++|.|||++||+..+.. .|++++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999998777677999999999988764 58998776
No 236
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.7e-46 Score=395.67 Aligned_cols=221 Identities=19% Similarity=0.320 Sum_probs=188.5
Q ss_pred cCceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCc-hhhh
Q psy10858 87 EEADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIY-HKTA 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~-~~~~ 163 (457)
.++|+++|++++|+. +++.+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.... ....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 357999999999932 125799999999999999999999999999999999999995 8999999998775322 1234
Q ss_pred cCcEEEEcCCC---CCCCCCCHHHHHHHhhh--hc---CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858 164 GSKVGYMPQEL---AMFGELTIKETLNFFGM--IY---GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l~---g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL 233 (457)
++++||+||++ .+++.+||++|+.+... .. +.......+++.++++.+++. . .++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 67899999996 58899999999976431 11 223334456678899999995 3 689999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
|+||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++..+.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999988877789999999999999965 99999999999998876543
No 237
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-46 Score=344.22 Aligned_cols=174 Identities=34% Similarity=0.542 Sum_probs=159.1
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--hhhhcCcE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGSKV 167 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--~~~~r~~I 167 (457)
|+++|++++|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.... ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999987 78999999999999999999999999999999999999999999999998775432 23456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
+|++|++.+++.+|++||+.+. ||||||||++||+||+.+|++||||
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilD 125 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLD 125 (178)
T ss_pred EEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999889999998643 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCe
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGR 298 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~Gk 298 (457)
|||+|||+.++..++++++.++++ |+|||++||+++++. .||++++|++|+
T Consensus 126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999998877666 899999999999997 499999999885
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=341.64 Aligned_cols=172 Identities=41% Similarity=0.710 Sum_probs=158.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999987 68999999999999999999999999999999999999999999999998775432 344678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
+||++.+++.+|+.||+. ||||||||++|||||+.+|++||||||
T Consensus 78 ~~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEP 122 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEP 122 (173)
T ss_pred EecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999973 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
|+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|++
T Consensus 123 t~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999988877679999999999999974 999999999974
No 239
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-45 Score=349.05 Aligned_cols=192 Identities=24% Similarity=0.291 Sum_probs=166.1
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~ 163 (457)
.+.++|++|.|+++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 57899999999753 4789999999999999999999999999999999999999 89999999998875432 234
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
++.++|++|++.+++.+||+||+.+..... .++++.+||||||||++||+||+++|++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 678999999999999999999997653211 4678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE-EcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIM-TTQYIEEAN-DASEVAFLYKGRIIAQD 303 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIi-sTH~~~ea~-~~dri~im~~GkI~~~g 303 (457)
|||||||+|||+.+++.++++++.+.++ +.|+|+ ++|+.+++. .||++++|++|+++..|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999998776554 666555 566678875 59999999999998654
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-45 Score=388.67 Aligned_cols=236 Identities=23% Similarity=0.315 Sum_probs=205.7
Q ss_pred CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ceEEEEcCccCCCCch-
Q psy10858 88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS----QGEIWVLGGHPASIYH- 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~----sG~I~i~G~~~~~~~~- 160 (457)
++++++||++.|.... ..||+||||+|.+||++||+|.|||||||+.++|.|++++. +|+|.++|+++.....
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 4899999999997532 36999999999999999999999999999999999999987 8999999987654332
Q ss_pred ---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-C--CCCCCCCChhHHHHH
Q psy10858 161 ---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-L--ERPVKYLSGGQKRRL 231 (457)
Q Consensus 161 ---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~--~~~~~~LSGGqkQRl 231 (457)
...+++|+|+||++ +|.|-+||.+.+.-..+.++ .+.++..+++.++++.++|++ . +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 23457899999998 46666999988876655554 557888899999999999975 2 469999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
.||+||+.+|++||+||||++||+..+.+|+++++.++ +.|+++|++|||++.+.. ||||++|++|++++.|++++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999977765 569999999999999865 9999999999999999999999
Q ss_pred hcCCcccHHHHHHh
Q psy10858 310 SKYSMPKLSDVFYK 323 (457)
Q Consensus 310 ~~~~~~~l~~~f~~ 323 (457)
+++..++.......
T Consensus 244 ~~p~hpYT~~Ll~a 257 (539)
T COG1123 244 SNPQHPYTRGLLAA 257 (539)
T ss_pred hccCCcccHHHHhh
Confidence 99887776655443
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.6e-46 Score=344.41 Aligned_cols=178 Identities=30% Similarity=0.468 Sum_probs=160.0
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++.+..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ....++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999976223799999999999999999999999999999999999999999999999876432 2334678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
+||++.+++ .|++||+ +.+||||||||++|||||+.+|++||||||
T Consensus 80 ~~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP 125 (178)
T cd03247 80 LNQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEP 125 (178)
T ss_pred EccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998885 6999987 678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g 303 (457)
|+|||+.+++.+++.++.+. ++.|||++||+++++..|||+++|++|++++.|
T Consensus 126 ~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 126 TVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred cccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999987764 589999999999999779999999999998654
No 242
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-45 Score=348.15 Aligned_cols=197 Identities=24% Similarity=0.276 Sum_probs=173.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++|++ ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. .....++++|
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 5889999999987 789999999999999999999999999999999999999999999999987753 2234567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|++|++.+++.+||+||+.+..... .. ...+.++++.+++.. .++++.+||||||||++|||||+++|++||||
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD 152 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999988999999998754221 11 235678888888864 68889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i 293 (457)
|||+|||+.+++.++++++.++++|.|||++||+.+.+..||.-.+
T Consensus 153 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999988776779999999999999988886443
No 243
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-45 Score=344.41 Aligned_cols=175 Identities=23% Similarity=0.448 Sum_probs=158.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~ 166 (457)
++++++|++++| +++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ....+++
T Consensus 3 ~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 3 PVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred cEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 579999999998 799999999999999999999999999999999999999999999998876543 2234678
Q ss_pred EEEEcCCC---CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQEL---AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~---~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
++|+||++ .+++.+|++||+.++.. |||||||||+||+||+++|++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~l 125 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRV 125 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCE
Confidence 99999995 57888999999976421 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
|||||||+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|++
T Consensus 126 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 126 LILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999988776679999999999999976 999999999974
No 244
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-46 Score=395.08 Aligned_cols=216 Identities=19% Similarity=0.344 Sum_probs=185.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~ 165 (457)
.++++++|+++.|+ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ...++
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 35899999998763 37999999999999999999999999999999999999999999999987743222 23456
Q ss_pred cEEEEcCC---CCCCCCCCHHHHHHHhhhhc--------CC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHH
Q psy10858 166 KVGYMPQE---LAMFGELTIKETLNFFGMIY--------GM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRL 231 (457)
Q Consensus 166 ~IGyvpQ~---~~L~~~lTV~EnL~~~~~l~--------g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRl 231 (457)
++||+||+ ..+++.+||.||+.+....+ +. ......+++.++++.+++. . .++++++|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 89999998 46889999999998643211 11 2233345677889999995 4 7999999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
+|||||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|+++..++..
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCc
Confidence 99999999999999999999999999999999988877779999999999999865 9999999999999887663
No 245
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.4e-45 Score=361.56 Aligned_cols=220 Identities=18% Similarity=0.213 Sum_probs=182.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
...|+++|++++|++.++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 45799999999997633579999999999999999999999999999999999999999999999988765444455678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
+||++|++.+++ .|++||+..... ........ .+.++++.+ ++.. .++.+.+||||||||++|||||+
T Consensus 97 i~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 97 LSIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999998886 599999864311 11111111 122333333 3432 46678899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|++|||||||+|||+.+++.++++++.+ .++.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999999999998775 458999999999999977999999999999999999988754
No 246
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=387.87 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=198.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~ 165 (457)
.+.++++|++|+|+. ..||++|||+|.+||+++|+|.||||||||+|+|+|.++|++|+|+++|+.....++ .....
T Consensus 6 ~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 6 PPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred cceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 468999999999999 999999999999999999999999999999999999999999999999998864433 34467
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcC----CCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYG----MDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g----~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.|+.++|+.+|.|+|||.||+.++....+ ++++...++..++++.+++. ..+.++++||.||||.|+|||||..+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999999987654332 57788888899999999883 47899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~ 305 (457)
++|||||||||+|+....+.++++++.++++|++||++||.|+|+.. ||||.+|++|+++...+.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999965 999999999999998873
No 247
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.6e-46 Score=346.08 Aligned_cols=181 Identities=29% Similarity=0.451 Sum_probs=158.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCcEEEEcCCCC--CCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSKVGYMPQELA--MFGE 179 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~IGyvpQ~~~--L~~~ 179 (457)
+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... .....++.+||+||++. ++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 6799999999999999999999999999999999999999999999999876421 12234568999999973 44 5
Q ss_pred CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHH
Q psy10858 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR 258 (457)
Q Consensus 180 lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r 258 (457)
.||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 799999988655555555556667888999999964 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 259 KRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 259 ~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
+.++++++.++++|+|||++||+++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999888777799999999999864
No 248
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-45 Score=339.23 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=195.5
Q ss_pred CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh----
Q psy10858 88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---- 161 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---- 161 (457)
.+|++++++|..+.. ...+|++|+|.|++||-++|+|||||||||||-+++|+..|++|+|.+.|++....+..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 378999999998753 36799999999999999999999999999999999999999999999999988665422
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
...++||+|||.+.|.|+||..||+...+.+.|-+..+......++++.+||.. ++.+|.+|||||||||+||||++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 235789999999999999999999999999998766677778889999999965 8999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEE
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~ 301 (457)
|++||.||||-+||...-++|.++ ....++.|+|.+++|||...|.+|+|++-|.+|+++.
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999 5666788999999999999999999999999999975
No 249
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-44 Score=391.28 Aligned_cols=217 Identities=20% Similarity=0.276 Sum_probs=184.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.|+++||++.|.++ +.+|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.++|.++...+....|++||
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 49999999766432 67999999999999999999999999999999999999 99999999999998877777889999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
||||++.+|+. |++||+.++.. ..++++..+.++. .++.+ |+.. ......+||||||||++|||||+++
T Consensus 427 ~v~Q~~~LF~~-TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 427 WVGQNPQLPHG-TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred EecCCCcCCCc-CHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999975 99999987531 2344444333322 22222 2211 2345677999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+|||||||||+||+.+.+.+.+.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999999999999999999999887753 58999999999999989999999999999999999999865
No 250
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=344.51 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=197.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.++.+.+++.+|.+....+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++|+.+... ...-
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP-----gaer 76 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP-----GAER 76 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC-----Cccc
Confidence 46788999999988444599999999999999999999999999999999999999999999999988643 3456
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|.|||++.|+|.+|+.+|+.|+.++.|+++.+..+++.+.+..++|.. .++++-+|||||||||.|||||+.+|++|+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL 156 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence 999999999999999999999999999999999999999999999965 5889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChh
Q psy10858 247 DEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPD 306 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~ 306 (457)
|||+++||.-.|+++-++ ++.++..|+.++++||+++||.. ++|+++|. .|+|+..-+++
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999 77888889999999999999975 99999998 68888776664
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.7e-45 Score=345.24 Aligned_cols=184 Identities=26% Similarity=0.357 Sum_probs=164.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKT-AGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~-~r~~ 166 (457)
++++|++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++....... .+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999987 7899999999999999999999999999999999999 5799999999999876543222 2456
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
++|+||++.+++.+++.+++ ++...+||||||||++|||||+.+|++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl 128 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999988988776 112368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh--ccCeEEEEeCCeEEEecCh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN--DASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~--~~dri~im~~GkI~~~gs~ 305 (457)
||||+|||+.+++.++++++.+.++|+|||++||+++++. .|||+++|++|++++.|+.
T Consensus 129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 9999999999999999998877767899999999999997 5999999999999999844
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.8e-45 Score=343.86 Aligned_cols=184 Identities=29% Similarity=0.439 Sum_probs=163.8
Q ss_pred ceEEEeeEEEeCCC----CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh
Q psy10858 89 ADEGKNTEKEELKP----SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~----~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~ 162 (457)
.++++|++++|++. .+.+++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58899999999752 257999999999999999999999999999999999999 9999999999987753 23
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
.++.++|+||++.+++.+|++||+.+..... +||||||||++|||||+.+|+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~ 131 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPS 131 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999999997532110 899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HHh-ccCeEEEEeCCeEEEec
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EAN-DASEVAFLYKGRIIAQD 303 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea~-~~dri~im~~GkI~~~g 303 (457)
+|||||||+|||+.+++.++++++.+.++|+|||++||+++ ++. .||++++|++|++++.|
T Consensus 132 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999998887667999999999996 565 59999999999997653
No 253
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.4e-45 Score=344.06 Aligned_cols=195 Identities=24% Similarity=0.297 Sum_probs=169.1
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999987 88999999999999999999999999999999999999999999999998765432 234578999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
++|++.+++.+|+.||+.++....+. + .+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999998889999999876554431 1 235677888899964 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEE
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVA 292 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~ 292 (457)
||+|||+.+++.+++++..++++|.|||++||+...+ .|++++
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 9999999999999999887767799999999998543 245554
No 254
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=356.43 Aligned_cols=211 Identities=22% Similarity=0.310 Sum_probs=184.4
Q ss_pred ceEEEeeEEEeCC------------------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858 89 ADEGKNTEKEELK------------------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150 (457)
Q Consensus 89 ~Iei~nlsk~yg~------------------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i 150 (457)
-++++||+|.|.. ..+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4678888877743 1256999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHH
Q psy10858 151 LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR 229 (457)
Q Consensus 151 ~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQ 229 (457)
+|. +++++|+..+++.+|+.+|+.+.....+.+.++....+..+++.+++.. .++.+.+|||||||
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA 150 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 873 4577888778888999999987655556555555666677888888854 68899999999999
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||+||+||+.+|++|||||||+|||+.+++.+++.+..++++|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987777779999999999999965 999999999999999999998
Q ss_pred hhcC
Q psy10858 309 KSKY 312 (457)
Q Consensus 309 ~~~~ 312 (457)
..++
T Consensus 231 ~~~~ 234 (264)
T PRK13546 231 LPKY 234 (264)
T ss_pred HHHh
Confidence 7653
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-45 Score=341.31 Aligned_cols=184 Identities=28% Similarity=0.391 Sum_probs=162.6
Q ss_pred CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhhh
Q psy10858 88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~~ 163 (457)
..|+++|+++.|++. ++.+++|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++. ...
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNF 77 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHh
Confidence 368999999999742 257999999999999999999999999999999999986 489999999998764 234
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
++.++|++|++.+++.+|++||+.+.... + +|||||||||+|||||+.+|++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL----------------R------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH----------------h------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 56899999999999999999999763210 0 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH-H-hccCeEEEEeC-CeEEEec
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE-A-NDASEVAFLYK-GRIIAQD 303 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e-a-~~~dri~im~~-GkI~~~g 303 (457)
|||||||+|||+.+++.+++.++.++++|+|||++||++++ + ..||++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999988877679999999999984 5 45999999999 9998754
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.6e-45 Score=402.37 Aligned_cols=221 Identities=26% Similarity=0.372 Sum_probs=190.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.-.|+++|++++|+..+..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++...+....|+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 34699999999999854579999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHH-----HHHHhHcCC--C-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM-----RKYSHVLKL--P-NLERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~-----~~ll~~l~L--~-~~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
||||+|++.||.. |++||+.+.... .+.+++.+.+ ++....+-+ . .......+||||||||++|||||+
T Consensus 549 ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 549 VGYVLQDPFLFSG-SIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred eeEEcccchhhcC-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999875 999999876432 2223322221 122222211 1 135667789999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|+|||||||||+||+.+.+.+.+.+.... .|+|+|++||++..++.||||++|++|+|+.+|+.+++.+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999987764 58999999999999999999999999999999999999876
No 257
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-44 Score=399.23 Aligned_cols=213 Identities=21% Similarity=0.312 Sum_probs=185.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|+.|
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 36999999999964336799999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~ 235 (457)
|||||++.+|+. |++||+.++.. .++++. .++++..++. . ......+||||||||++|||
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i----~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGGAP---LTLDEA----WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC---CCHHHH----HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987533 334333 3334433331 1 23445679999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++||||||||+||+.+.+++.+.++.. ++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999997664 5899999999999989999999999999999999999865
No 258
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-46 Score=350.33 Aligned_cols=229 Identities=24% Similarity=0.320 Sum_probs=210.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++|+|++ +.+|+++|++|++|.+++|+|||||||||||.+++.|+++++|+|+++|.++...+...+.++++
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6899999999999 99999999999999999999999999999999999999999999999999998887778888999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhh--cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMI--YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l--~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
.+-|+..+-..+||+|-+.|+..- .|...++.+..++++++.++|.. .+++..+||||||||..+|+.|+++.+.++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 999999999999999999885433 35556677788999999999976 699999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
||||.++||......++++++.+.++ |+||++|-||++.|.. +|+|+-|++|+++..|+|+++.+. +.++++|.
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~---~~L~eiyd 234 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP---EILSEIYD 234 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH---HHHHHHhc
Confidence 99999999999999999997776554 9999999999999975 999999999999999999999864 66777775
No 259
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.3e-45 Score=378.23 Aligned_cols=216 Identities=27% Similarity=0.364 Sum_probs=198.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcC
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~ 165 (457)
.+++++++++|+|++ ..|+++|||+|++|||.+|+|.||||||||||+|.|+++|++|+|+++|+++.-.+ ....+.
T Consensus 2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 368999999999998 99999999999999999999999999999999999999999999999999876433 345678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhh---cCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l---~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
.||+|+|++.|++.+||.||+.++..- ..++.+..++++.++.+.++|+ +.++++.+||-||||||.|.+||.++|
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 899999999999999999999987642 2356778889999999999997 489999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
++|||||||+-|-|...+++++.++.++++|+|||++||-++|+.. |||+.+|+.|+++....
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999976 99999999999876655
No 260
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-44 Score=388.05 Aligned_cols=220 Identities=23% Similarity=0.345 Sum_probs=187.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++.++.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 46999999999965336799999999999999999999999999999999999999999999999988766656678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
||+||++.+|+. |++||+.++.. ..++++..+. .++.++.+ ++.. .++...+||||||||++|||||++
T Consensus 395 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 395 GYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999976 99999986432 2333333222 22334444 3322 456788999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|++|||||||+|||+.+++.+++.+....++|+|+|++||+++.++.||+|++|++|++++.|+++++.+
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998776556899999999999888899999999999999999988754
No 261
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=386.61 Aligned_cols=214 Identities=19% Similarity=0.364 Sum_probs=185.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~ 166 (457)
++++++|+++ .+|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.++|+++..... ...+++
T Consensus 256 ~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 256 VRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred cEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 5789999984 26999999999999999999999999999999999999999999999987754322 234567
Q ss_pred EEEEcCCC---CCCCCCCHHHHHHHhhh--h---cC-CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858 167 VGYMPQEL---AMFGELTIKETLNFFGM--I---YG-MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 167 IGyvpQ~~---~L~~~lTV~EnL~~~~~--l---~g-~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
+||+||++ .+++.+||.||+.+... . ++ .+.+...+++.++++.+++. . .++++.+|||||||||+||+
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999996 57888999999986421 1 11 23334456678899999994 3 79999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||+.+|++|||||||+|||+.+++.++++++.+.++|.|||++|||++++.. |||+++|++|+++..++++++
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999988877779999999999999965 999999999999999988765
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-45 Score=335.60 Aligned_cols=171 Identities=32% Similarity=0.503 Sum_probs=154.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999998721279999999999999999999999999999999999999999999999987754333345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
+||++.+++ .|+.||+ |||||||||+||+||+.+|++||||||
T Consensus 81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998876 5999887 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
|+|||+.+++.+++++..+. +++|||++||+++++..||++++|++|+
T Consensus 124 ~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 124 TSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999987765 4799999999999996799999999985
No 263
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.8e-44 Score=395.71 Aligned_cols=220 Identities=24% Similarity=0.368 Sum_probs=186.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|+.|
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 46999999999975446799999999999999999999999999999999999999999999999998877767788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+. |++||+.++.. ..++++..+.++. .++.+ |+. .......+||||||||++|||||+.
T Consensus 542 ~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 542 GYVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999875 99999987532 2334433333221 11111 111 1234567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++||||||||+||+.+.+.+++.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999987764 48999999999999988999999999999999999998754
No 264
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.4e-45 Score=338.69 Aligned_cols=177 Identities=34% Similarity=0.514 Sum_probs=157.3
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv 170 (457)
+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999987 7899999999999999999999999999999999999999999999999887544433445679999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 171 pQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
|| +++.+++.. .++.+.+||||||||++|||||+.+|++||||||
T Consensus 79 ~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 79 PQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred HH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99 455566643 5778999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQD 303 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~g 303 (457)
|+|||+.+++.++++++.++++ |.|||++||+++++. .||++++|++|+++..|
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999998877665 899999999999985 59999999999997643
No 265
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.6e-44 Score=399.49 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=185.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 46999999999986446799999999999999999999999999999999999999999999999998777667788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+. |++||+.++.. ..++++..+.++. .++.+ |+.. ......+||||||||++|||||++
T Consensus 556 ~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 556 AMVDQDIFLFEG-TVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eEEecCChhhhc-cHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999865 99999987521 2334433332221 11111 1211 234567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++||||||||+||+.+.+.+++.++. .++|+|++||+++.+..||||++|++|++++.|+.+++.++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 9999999999999999999999999764 48999999999999989999999999999999999999864
No 266
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=389.55 Aligned_cols=216 Identities=20% Similarity=0.296 Sum_probs=184.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.++++|++++|.+.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....++.|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999754467999999999999999999999999999999999999999999999999987766666788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-------CCC-C----CCCCCCCChhHHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-------LPN-L----ERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-------L~~-~----~~~~~~LSGGqkQRlsLA~A 236 (457)
|+||++.+|+. |++||+.++.. -..++++.. ++++..+ ++. . .....+||||||||++||||
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~----~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART-EQYSREQIE----EAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC-CCCCHHHHH----HHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 99999999875 99999986421 112333333 3333333 221 2 33456799999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+++|++||||||||+||+.+.+.+.+.+... .+++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998775 357999999999998888999999999999999999999865
No 267
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=384.90 Aligned_cols=215 Identities=16% Similarity=0.270 Sum_probs=184.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~ 166 (457)
..+++++++. ..+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ....++.
T Consensus 256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4688999972 24899999999999999999999999999999999999999999999998764322 2234578
Q ss_pred EEEEcCCC---CCCCCCCHHHHHHHhhhhc----C--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858 167 VGYMPQEL---AMFGELTIKETLNFFGMIY----G--MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 167 IGyvpQ~~---~L~~~lTV~EnL~~~~~l~----g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
+||+||++ .+++.+|+.||+.+..... + .......+.+.++++.+++. . .++++.+|||||||||+||+
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999996 4888999999997643221 1 12223345677899999993 3 79999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999988887789999999999999965 999999999999999988764
No 268
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.3e-44 Score=389.96 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=188.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+....|+.|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 46999999999975335799999999999999999999999999999999999999999999999998877767778899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-------CC----CCCCCCChhHHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-------LE----RPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-------~~----~~~~~LSGGqkQRlsLA~A 236 (457)
||+||++.+|+. |++||+.++.. ..+++ .+.++++..++.+ .| ....+||||||||++||||
T Consensus 417 ~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa 489 (574)
T PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAAP--NASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489 (574)
T ss_pred eEEcccchhhcc-cHHHHhhcCCC--ccCHH----HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence 999999999875 99999987532 22333 3445555555531 12 3567799999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+++|++||||||||+||+.+++.+.+.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 999999999999999999999999999987764 58999999999999988999999999999999999999865
No 269
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-43 Score=382.35 Aligned_cols=228 Identities=18% Similarity=0.287 Sum_probs=188.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|+.. +.+|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.|
T Consensus 333 ~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 369999999999742 5699999999999999999999999999999999999999999999999998877767788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
+|+||++.+|+. |++||+.++. ...++++..+..+. .++.+ |+.. ......+||||||||++|||||++
T Consensus 412 ~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 412 AVVFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred EEEecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999865 9999998752 12334433332221 22222 1211 234456799999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
+|++||||||||+||+.+.+.+++.+.... +++|||++||+.+.++.||+|++|++|++++.|+.+++..+. +...+
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~--~~y~~ 565 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG--GRFAA 565 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC--ChHHH
Confidence 999999999999999999999999987653 589999999999999889999999999999999999997652 33444
Q ss_pred HHH
Q psy10858 320 VFY 322 (457)
Q Consensus 320 ~f~ 322 (457)
.+.
T Consensus 566 l~~ 568 (588)
T PRK13657 566 LLR 568 (588)
T ss_pred HHH
Confidence 443
No 270
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.7e-44 Score=386.35 Aligned_cols=223 Identities=22% Similarity=0.334 Sum_probs=190.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++. +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....+++|
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 359999999999752 5699999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+. |++||+.++. ..++++ +.++++.+++ +. ......+||||||||++|||
T Consensus 418 ~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 418 AMVQQDPVVLAD-TFLANVTLGR---DISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred EEEccCCccccc-hHHHHHHhCC---CCCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999987 9999998863 233333 3344444443 11 23455679999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMP 315 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~ 315 (457)
||+++|++||||||||+||+.+.+.+.+.++... +++|+|++||+++.+..||+|++|++|++++.|+++++.++. +
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~--~ 566 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ--G 566 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC--C
Confidence 9999999999999999999999999999987764 479999999999998899999999999999999999998652 3
Q ss_pred cHHHHHH
Q psy10858 316 KLSDVFY 322 (457)
Q Consensus 316 ~l~~~f~ 322 (457)
...+.+.
T Consensus 567 ~y~~l~~ 573 (592)
T PRK10790 567 RYWQMYQ 573 (592)
T ss_pred HHHHHHH
Confidence 4444443
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.6e-44 Score=383.43 Aligned_cols=217 Identities=21% Similarity=0.344 Sum_probs=185.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcC
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~ 165 (457)
.++|+++|+++ . +|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...... ..++
T Consensus 266 ~~~l~~~~l~~---~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 266 APVLTVEDLTG---E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CceEEEeCCCC---C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 45899999983 1 59999999999999999999999999999999999999999999999877543222 2346
Q ss_pred cEEEEcCCC---CCCCCCCHHHHHHHhhh--h-cCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 166 KVGYMPQEL---AMFGELTIKETLNFFGM--I-YGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 166 ~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l-~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++||+||++ .+++.+|+.+|+..... . ........++++.++++.+++. . .++++.+|||||||||+||+||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 799999985 58888999999864311 1 1112223345678889999995 4 7899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999988877779999999999999975 99999999999999999987653
No 272
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-44 Score=338.70 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=158.9
Q ss_pred eEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 90 DEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 90 Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
++++||+++|++.. ..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57899999998631 2699999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
|||+||++.++ .+|++||+.+.... ..+...+..+ +.+..+ ++. ..++.+.+||+|||||++|||||+
T Consensus 68 i~~~~q~~~l~-~~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 68 IAYVSQEPWIQ-NGTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEEecCchhc-cCcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999988 56999999875332 2211111111 111111 121 145678999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
.+|+++||||||+|||+.+++.+++. ++...++|+|||++||+++++..||++++|++|+
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999999999985 6665556899999999999987799999999985
No 273
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-44 Score=336.53 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=166.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++... .++.++
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----AKPYCT 73 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----hhhhEE
Confidence 5789999999976 66665 9999999999999999999999999999999999999999999876432 135699
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|++|++.+++.+||.||+.+....++ ..+++.++++.+++.. .++.+.+||||||||++||+||+.+|++||||
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD 148 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD 148 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999988888999999987654433 1235667788888854 78899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
|||+|||+.+++.++++++...++|.|||++||++++++.+|-+
T Consensus 149 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 149 EVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 99999999999999999876566799999999999998887765
No 274
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.4e-44 Score=393.36 Aligned_cols=219 Identities=24% Similarity=0.321 Sum_probs=185.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|+.+ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....|++|
T Consensus 472 ~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 369999999999742 6799999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+. |++||+.++.. ...++++..+.++. .++.+ |++. ......+||||||||++|||||++
T Consensus 551 ~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 551 NYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred EEEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999876 99999987532 12344433332221 11111 1111 234567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++||||||||+||+.+.+.+++.+... +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999997764 47999999999999988999999999999999999999765
No 275
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-44 Score=395.93 Aligned_cols=214 Identities=20% Similarity=0.290 Sum_probs=182.5
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..|+++||+++|++. ++.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.+.+....+++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 469999999999752 3679999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
|+||||++.+|. -|++||+.++.. ..++++. .++++..++ +. .+....+||||||||++||
T Consensus 557 i~~v~Q~~~lF~-gTIreNI~~g~~--~~~~e~i----~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 557 VALVGQEPVLFS-GSVRENIAYGLT--DTPDEEI----MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred ceEEecCccccc-cCHHHHHhcCCC--CCCHHHH----HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 999999999986 599999987532 2233333 333333332 11 2344568999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+++|+|||||||||+||+.+.+.+.+ .. ..+++|+|++||+++.+..||+|++|++|+|++.|+++++.++
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999988 22 2468999999999999988999999999999999999999865
No 276
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.3e-44 Score=393.34 Aligned_cols=214 Identities=23% Similarity=0.361 Sum_probs=186.9
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~--sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++|++++|++ +.+|+|||+++++||++||+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++++||
T Consensus 71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~y 144 (659)
T PLN03211 71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGF 144 (659)
T ss_pred cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEE
Confidence 4556677776 78999999999999999999999999999999999999885 8999999987642 23467999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-C-----CCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-L-----ERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~-----~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
|+|++.+++.+||+||+.+.+.++ ..+.++..++++++++.++|.+ . ++.+++|||||||||+||+||+++
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 999999999999999999876543 2345556677888999999954 3 456788999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EAN-DASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea~-~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+||||||||+|||+.++..++++++.++++|+|||++||+++ ++. .+|++++|++|+++..|+++++...
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~ 297 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence 9999999999999999999999998887778999999999998 464 5999999999999999999988653
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=376.39 Aligned_cols=213 Identities=21% Similarity=0.336 Sum_probs=186.7
Q ss_pred cCceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 87 EEADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
.++++++|++++|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 35899999999998632 3699999999999999999999999999999999999999999999988531
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
++.+.+.+++.+|++||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 89 ---~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LL 165 (549)
T PRK13545 89 ---LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL 165 (549)
T ss_pred ---eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 12223456778999999988665556666666667778899999964 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||||||+|||+.+++.+++.+..++++|.|||++||+++++.. ||++++|++|++++.|+++++...+
T Consensus 166 LLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999988877779999999999999965 9999999999999999999887653
No 278
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.1e-44 Score=362.16 Aligned_cols=190 Identities=26% Similarity=0.401 Sum_probs=170.0
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHH
Q psy10858 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWL 201 (457)
Q Consensus 122 LlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~ 201 (457)
|+||||||||||+|+|+|+++|++|+|+++|+++..... .++++||+||++.+|+.+||+||+.+....++.+..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999988754322 346899999999999999999999987666666666666
Q ss_pred HHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEc
Q psy10858 202 FQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTT 279 (457)
Q Consensus 202 ~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisT 279 (457)
+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.++.+.+ .|+|||++|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77889999999965 7899999999999999999999999999999999999999999999999777654 499999999
Q ss_pred CChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 280 QYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 280 H~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|+++++.. |||+++|++|+++..|+++++.+...
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999865 99999999999999999999987643
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=380.16 Aligned_cols=216 Identities=17% Similarity=0.274 Sum_probs=183.2
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~ 165 (457)
.++|+++|+++.+ +.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++..... ...++
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4589999999973 358999999999999999999999999999999999999999999999987754322 23356
Q ss_pred cEEEEcCCC---CCCCCCCHHHHH-----HHhhhhcCC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHH
Q psy10858 166 KVGYMPQEL---AMFGELTIKETL-----NFFGMIYGM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 166 ~IGyvpQ~~---~L~~~lTV~EnL-----~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA 234 (457)
.+||+||++ .+|+++|+.+|. .++...++. +.....+++.++++.+++. . .++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 799999985 478889887773 322222232 2334456677888899984 3 6999999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
+||+.+|+||||||||+|||+.+++.++++++.+.++|.|||++|||++++.. |||+++|++|+++..++++
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999988877789999999999999965 9999999999999887764
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.6e-44 Score=384.78 Aligned_cols=218 Identities=24% Similarity=0.341 Sum_probs=189.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.|+++|++++|++ ++.+|+|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.++...+....|++||
T Consensus 328 ~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 328 SIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred eEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 4999999999983 178999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH-----HhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-----SHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l-----l~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
||||++.||. -||+||+.++..- .+++++.+.++.+ +..+ |+.. .......||||||||++||||++++
T Consensus 407 ~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 407 IVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred EEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9999999998 6999999876432 3444544443332 2222 2211 2345568999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|++||||||||+||+.+.+.+.+.+.... +++|+|+++|.+..+..||+|++|++|+|++.|+++++..+
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999987655 57899999999999999999999999999999999999876
No 281
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.6e-44 Score=339.69 Aligned_cols=199 Identities=18% Similarity=0.286 Sum_probs=164.4
Q ss_pred EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCc
Q psy10858 91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSK 166 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~ 166 (457)
.+.|+.++|+.. ..+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... ....++.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999853 67999999999999999999999999999999999999999999999998764321 1123467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA 234 (457)
+||++|++.++ ..|++||+.+.... .... ..++++.+++. ..++++.+|||||||||+||
T Consensus 81 i~~~~q~~~~~-~~t~~~nl~~~~~~---~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 81 VAYAAQKPWLL-NATVEENITFGSPF---NKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEEcCCCccc-cccHHHHHhhcCcC---CHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999888 57999999875321 2211 12223333331 13567899999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWD--LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~--~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
|||+.+|++|||||||+|||+.+++.+++ +++.+++.|.|||++||+++++..||++++|++|+
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999999999998 66666667899999999999987799999999874
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=8.7e-44 Score=341.90 Aligned_cols=201 Identities=29% Similarity=0.467 Sum_probs=169.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCC--CCCHHHHHHHh
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG--ELTIKETLNFF 189 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~--~lTV~EnL~~~ 189 (457)
|+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++. ..++++||+||++.++. .+|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998653 23467999999987643 47999999875
Q ss_pred hhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH
Q psy10858 190 GMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264 (457)
Q Consensus 190 ~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~ 264 (457)
... .+.+.....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.+++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~ 155 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 321 11122233456788899999964 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858 265 LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 265 i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f 321 (457)
++.++++|+|||++||+++++.. ||++++| +|+++..|+++++.+. ..+.+.|
T Consensus 156 l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~---~~~~~~~ 209 (223)
T TIGR03771 156 FIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP---APWMTTF 209 (223)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh---HHHHHHh
Confidence 88777679999999999999865 9999999 8999999999988653 3455554
No 283
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-43 Score=326.25 Aligned_cols=160 Identities=29% Similarity=0.432 Sum_probs=147.5
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IG 168 (457)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++.+|
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999987 789999999999999999999999999999999999999999999999988765332 23456899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
|+|| ||||||||++|||||+.+|++|||||
T Consensus 79 ~~~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 79 MVYQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred EEEe--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~ 301 (457)
||+|||+.+++.++++++.+.++|.|||++||+++++.. |||+++|++|++++
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999988877779999999999999865 99999999999875
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=380.16 Aligned_cols=206 Identities=19% Similarity=0.246 Sum_probs=178.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++|++ +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.++|. .++|
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 5899999999987 78999999999999999999999999999999999999999999999762 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhh-h----------cCCC---------------------HHHHHHHHHHHHhHcCCCC-
Q psy10858 169 YMPQELAMFGELTIKETLNFFGM-I----------YGMD---------------------ESIWLFQMRKYSHVLKLPN- 215 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~-l----------~g~~---------------------~~~~~~~~~~ll~~l~L~~- 215 (457)
|++|++.+++.+||+||+.+... . .+.+ ..+..+++.++++.+++..
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999999999999999976321 0 0100 0122356778899999964
Q ss_pred -CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEE
Q psy10858 216 -LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAF 293 (457)
Q Consensus 216 -~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~i 293 (457)
.++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++++. +.|.|||+||||++++.. ||+|++
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEE
Confidence 357899999999999999999999999999999999999999999999975 358999999999999865 999999
Q ss_pred EeCCeE-EEecChhhhhh
Q psy10858 294 LYKGRI-IAQDSPDGFKS 310 (457)
Q Consensus 294 m~~GkI-~~~gs~~~l~~ 310 (457)
|++|++ ++.|+++++.+
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 47899887753
No 285
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=374.85 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=185.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|+++.|++++ ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.++|.+....+....+++++|
T Consensus 321 i~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 44559999999853 89999999999999999999999999999999999999999999999999888777788999999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--HHhHcCCCC-CCC----CCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPN-LER----PVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--ll~~l~L~~-~~~----~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
++|+|.+|.. |++||+.++.. ..+++++.+.+++ +.+.+.-+. +|. ....|||||+|||++||||+++++
T Consensus 400 v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999876 99999987532 1334444333322 222222211 344 444599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++||||||++||.++.+.+.+.+..+.+ ++|+|++||++..+..+|+|++|++|++++.|+++++.++
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999887654 5999999999999999999999999999999999999765
No 286
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-44 Score=326.78 Aligned_cols=218 Identities=26% Similarity=0.368 Sum_probs=200.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CC----chhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SI----YHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~----~~~~ 162 (457)
.|+++|+++.||. ..+|-||+|+-++||.+.|+||+|||||||++.|.=+.-|.+|+..+-|.... .. ....
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 5899999999999 89999999999999999999999999999999999999999999999876532 11 1234
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
+|+.+|+|||...|||.+||.|||.- ..+..|+++++...+..++++++.|.. +|+.|-.|||||+|||+|||||+.+
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 68899999999999999999999854 567789999999999999999999954 8999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|++|++||||++|||.-..++.++++.+...|.|-+++||..+.|+. +.||++|.+|+|++.|+.+.+
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999998899999999999999976 999999999999999997765
No 287
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-43 Score=382.20 Aligned_cols=206 Identities=26% Similarity=0.296 Sum_probs=179.1
Q ss_pred CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
++|+++||+++|+ + +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ ..+
T Consensus 5 ~~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIK 71 (556)
T ss_pred EEEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence 5899999999998 6 7899999999999999999999999999999999999999999999864 146
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhh-hc-------------CCCH----------------------HHHHHHHHHHHhH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGM-IY-------------GMDE----------------------SIWLFQMRKYSHV 210 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~-l~-------------g~~~----------------------~~~~~~~~~ll~~ 210 (457)
|||+||++.+++.+||.||+.+... ++ +... .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999986421 10 1110 0123467778889
Q ss_pred cCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cC
Q psy10858 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS 289 (457)
Q Consensus 211 l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~d 289 (457)
+++...++++++|||||||||+||+||+.+|++|||||||+|||+.++..++++++.+ +.|||+|||+++++.. ||
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence 9986578999999999999999999999999999999999999999999999998765 2599999999999975 99
Q ss_pred eEEEEeCCeEE-EecChhhhh
Q psy10858 290 EVAFLYKGRII-AQDSPDGFK 309 (457)
Q Consensus 290 ri~im~~GkI~-~~gs~~~l~ 309 (457)
+|++|++|+++ ..|+.+++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHH
Confidence 99999999986 778877654
No 288
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-42 Score=377.55 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=185.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus 333 ~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 369999999999752 4689999999999999999999999999999999999999999999999988766656678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
||+||++.+++ .|++||+.++.. ..++++..+..+. .+..+ ++.. .++...+||||||||++|||||++
T Consensus 412 ~~v~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 412 ATVFQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEEccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999986 599999987532 2234433333221 12211 2222 356678899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++|||||||||||+.+++.+++.++.. .+++|||++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999998776 458999999999999988999999999999999999998765
No 289
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.7e-43 Score=387.11 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=187.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|+..++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....|+.|
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 46999999999975436799999999999999999999999999999999999999999999999998877767778899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+. |++||+.++.. ..+.++..+..+ +.++.+ |++. ......+||||||||++|||||++
T Consensus 534 ~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 534 GVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred eEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999874 99999987432 233333332222 222222 2221 345567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++||||||||+||+.+++.+++.++.. ..++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 99999999999999999999999998776 468999999999999988999999999999999999999865
No 290
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=384.71 Aligned_cols=222 Identities=24% Similarity=0.330 Sum_probs=198.2
Q ss_pred CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858 88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~--- 162 (457)
++++++|++++|+.. .+.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++.......
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999632 257999999999999999999999999999999999999999999999999876543222
Q ss_pred -hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 163 -AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 163 -~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.++.+||+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++.+.+||||||||++|||||+.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 25689999999999999999999988655556555566677888999999964 7899999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
|++|||||||+|||+.+++.++++++.++++|+|||++||+++.++.|||+++|++|++++.|++++..
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999888777799999999999998789999999999999999998774
No 291
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-44 Score=350.50 Aligned_cols=224 Identities=25% Similarity=0.411 Sum_probs=198.9
Q ss_pred ceEEEeeEEEeCC-------------------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858 89 ADEGKNTEKEELK-------------------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW 149 (457)
Q Consensus 89 ~Iei~nlsk~yg~-------------------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~ 149 (457)
++.++|++|.|.. ....||+||||+|++|+++|++|||||||||++|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 5677777777742 124599999999999999999999999999999999999999999999
Q ss_pred EcCccCCCCchhhhcCcEEEEc-CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhH
Q psy10858 150 VLGGHPASIYHKTAGSKVGYMP-QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ 227 (457)
Q Consensus 150 i~G~~~~~~~~~~~r~~IGyvp-Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGq 227 (457)
++|.++.... +..-+++|+|+ |...++.++.+.+.+.....+|.++.++.+++.+.+.+.+++.. ++.+++.||.||
T Consensus 83 V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq 161 (325)
T COG4586 83 VNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ 161 (325)
T ss_pred ecCcCcchhH-HHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence 9999886533 23345677754 77788888889999988888999999999999999999999964 889999999999
Q ss_pred HHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 228 kQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~ 305 (457)
|.|+.||.||+|+|++|+|||||-|||..++..+.+.++.. .+.+.||+++||+++.+.. ||||++|++|+++.+|+.
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 99999999999999999999999999999999999997665 5669999999999999865 999999999999999999
Q ss_pred hhhhhcCC
Q psy10858 306 DGFKSKYS 313 (457)
Q Consensus 306 ~~l~~~~~ 313 (457)
+++...|+
T Consensus 242 ~~l~~~f~ 249 (325)
T COG4586 242 AQLQEQFG 249 (325)
T ss_pred HHHHHHhC
Confidence 99987765
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.6e-43 Score=379.31 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=184.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|++++++++|+..+..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 35999999999975436799999999999999999999999999999999999999999999999988766656678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
+|+||++.+|+. |++||+.++.. ..++++..+..+. .+..+ |+.. .+....+||||||||++|||||++
T Consensus 392 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 392 AVVSQTPFLFSD-TVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred EEEccCCeeccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999975 99999987532 1233333322221 11111 1111 245567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++|||||||++||+.+++.+++.++... +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999987764 68999999999999888999999999999999999999865
No 293
>KOG0058|consensus
Probab=100.00 E-value=2.4e-43 Score=379.17 Aligned_cols=221 Identities=24% Similarity=0.353 Sum_probs=193.6
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
-.|+.+||++.|... +..+|+|+||+|++||+++|+||||+||||+.++|-.++.|++|+|.+||.++.+.++...|++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 469999999999764 3679999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--H-hHcCCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--S-HVLKLPN-----LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l-~~l~L~~-----~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
||+|-|+|.||.. ||+||+.|+.. ..+.+++...++.+ - -..++++ -+.+..+||||||||++|||||+
T Consensus 544 Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 9999999999975 99999998765 44555544333221 1 1223432 35677799999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
.+|.||||||.||+||..+...+-+.+....+ ++|||++.|.+..++.||+|++|++|+|++.|+.++++++.
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 99999999999999999999999999987654 69999999999999999999999999999999999999864
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.8e-43 Score=374.22 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=177.4
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCC-chhhhc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASI-YHKTAG 164 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~-~~~~~r 164 (457)
.++++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+.++ ++|+|+++|+++... .....+
T Consensus 258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 468999999999987 7899999999999999999999999999999999999876 799999999765321 112245
Q ss_pred CcEEEEcCCCCCCCC--CCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHH
Q psy10858 165 SKVGYMPQELAMFGE--LTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~--lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~A 236 (457)
+++||++|++.++.. .++.+++.+... .++.......+++.++++.+++.. .++++.+|||||||||+||+|
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 689999999866443 567766643211 111112233456788999999953 688999999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHh-c-cCeEEEEeCCeEEEec
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAN-D-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~-~-~dri~im~~GkI~~~g 303 (457)
|+.+|++|||||||+|||+.+++.++++++.++++| .|||++|||++++. . ||++++|++|++++.-
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999988876665 57999999999995 3 7999999999987654
No 295
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=8.5e-43 Score=375.71 Aligned_cols=217 Identities=23% Similarity=0.332 Sum_probs=184.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++||+++|.+.++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.+
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 35999999999965446799999999999999999999999999999999999999999999999988776666778899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-CC----CCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-LE----RPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-~~----~~~~~LSGGqkQRlsLA~ 235 (457)
+|+||++.+|+. |++|||.++.. ...++++ +.++++.+++ +. +| .....||||||||++|||
T Consensus 409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~----i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 409 ALVSQDVVLFND-TIANNIAYGRT-EQADRAE----IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred eEEccCcccccc-cHHHHHhcCCC-CCCCHHH----HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999999865 99999986531 1233333 3333444333 11 22 334579999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|++.+|++||||||||+||+.+.+.+++.+... .+++|+|++||+.+.+..||+|++|++|++++.|+.+++.++
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 999999999999999999999999999998775 357999999999998888999999999999999999998764
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.5e-43 Score=376.53 Aligned_cols=207 Identities=26% Similarity=0.290 Sum_probs=177.5
Q ss_pred CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+++++|++++|+ + +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++ +..
T Consensus 3 ~~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIK 69 (552)
T ss_pred EEEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence 4799999999998 5 7899999999999999999999999999999999999999999999864 146
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh--------------cCCCHHH----------------------HHHHHHHHHhH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI--------------YGMDESI----------------------WLFQMRKYSHV 210 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--------------~g~~~~~----------------------~~~~~~~ll~~ 210 (457)
|||+||++.+++++||.||+.+.... ++.+..+ ...++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999874221 0111111 12455667788
Q ss_pred cCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cC
Q psy10858 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS 289 (457)
Q Consensus 211 l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~d 289 (457)
++++..++++++|||||||||+||+||+.+|++|||||||++||+.++..+.++++.. +.|||+|||+++++.. ||
T Consensus 150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence 8885568899999999999999999999999999999999999999999999997654 3599999999999975 99
Q ss_pred eEEEEeCCeEE-EecChhhhhh
Q psy10858 290 EVAFLYKGRII-AQDSPDGFKS 310 (457)
Q Consensus 290 ri~im~~GkI~-~~gs~~~l~~ 310 (457)
++++|++|+++ ..|+.+++.+
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7788877544
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=375.91 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=178.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 58999999999987 78999999999999999999999999999999999999999999998762 469
Q ss_pred EEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 168 GYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 168 GyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
||+||++. +++.+|+.+|+.++.. .. ...+++.++++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l 459 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ---EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc---CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 99999974 5667999999865321 11 1234567889999984 3 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhhhc
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFKSK 311 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~~~ 311 (457)
|||||||+|||+.+++.++++++.. +.|||++|||++++.. |||+++|++|+++ ..|+++++.+.
T Consensus 460 llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 460 LVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999998765 3599999999999975 9999999999998 88988887654
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.9e-43 Score=376.19 Aligned_cols=216 Identities=21% Similarity=0.329 Sum_probs=183.5
Q ss_pred CceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..|+++|++++|.... +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 3699999999997422 579999999999999999999999999999999999999999999999998876666667789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-----------CC-CCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-----------PN-LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-----------~~-~~~~~~~LSGGqkQRlsLA 234 (457)
+||+||++.+|+. |++||+.++.. ..++++ +.++++..++ .. ......+||||||||++||
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~~----~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGRP--DATDEE----VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 9999999999865 99999987431 122333 3333333332 11 2345667999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||++++|++||||||||+||+.+++.+++.++... +++|+|++||+++.+..+|||++|++|++++.|+++++.++
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 99999999999999999999999999999987764 58999999999999888999999999999999999998764
No 299
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.8e-42 Score=343.95 Aligned_cols=205 Identities=24% Similarity=0.284 Sum_probs=168.1
Q ss_pred cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
+....|+++|+++. + +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 35 SDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 45578999999985 3 5699999999999999999999999999999999999999999999976
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHH
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~A 236 (457)
+|+|++|++.+++. ||+||+.+.... ........ +...++.+... ..++.+.+|||||||||+||+|
T Consensus 99 -~i~yv~q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 99 -RISFSSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA 173 (282)
T ss_pred -EEEEEeCccccccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHH
Confidence 39999999988875 999999864321 11111111 11122221110 1245578999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+.+|++|||||||+|||+.+++.+++. ++.+. ++.|||++||+++++..||++++|++|+++..|+++++.+.
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999986 55543 57999999999999877999999999999999999988754
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-42 Score=320.03 Aligned_cols=164 Identities=28% Similarity=0.368 Sum_probs=147.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|++++|+++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999642 57999999999999999999999999999999999999999999999762 57999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
++|++.++ .+|+.||+.+. .+.+||||||||++|||||+.+|++||||||
T Consensus 69 ~~q~~~~~-~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 69 LPQRPYLP-LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred ECCCCccc-cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99998875 57999999652 3678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
|+|||+.+++.++++++.. +.|||++||+++.+..||++++|++|-
T Consensus 119 t~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 119 TSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred ccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999997764 689999999998776799999998763
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=340.15 Aligned_cols=198 Identities=25% Similarity=0.331 Sum_probs=177.4
Q ss_pred CceEEEeeEEEeCCCC-------ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858 88 EADEGKNTEKEELKPS-------NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~-------~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~ 160 (457)
++++++||+|.|..+. ..||+||||+|++||++||+|.||||||||-|+|+|+++|++|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 5899999999996431 37999999999999999999999999999999999999999999999998764321
Q ss_pred hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
.++..+++.++++.++++. +++++++|||||+||++|||||+
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 3445677889999999953 79999999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~ 316 (457)
.+|+++++|||+|+||...+.++.+++..+++ .|.|.+++|||+..++. ||||++|..|+|++.|+.++++....+++
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 99999999999999999999999999776654 59999999999999986 99999999999999999999998877776
Q ss_pred HHHHHH
Q psy10858 317 LSDVFY 322 (457)
Q Consensus 317 l~~~f~ 322 (457)
...+..
T Consensus 206 Tk~Ll~ 211 (268)
T COG4608 206 TKALLS 211 (268)
T ss_pred HHHHHH
Confidence 666554
No 302
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-42 Score=371.03 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=177.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++|++++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 358999999999987 7899999999999999999999999999999999999999999999832 2 15
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|||+||++ .+++.+||.||+.+.....+..... .....+++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE--IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccH--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999997 7888999999998765433332211 2344678899995 3 5899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-CeEE-EecChhhhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-GRII-AQDSPDGFKS 310 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-GkI~-~~gs~~~l~~ 310 (457)
|||||||+|||+.+++.+++++..+ .| |||++|||++++.. |||+++|++ |++. ..|+.+++.+
T Consensus 467 llLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 467 LLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999999998775 24 89999999999975 999999986 7876 5777776654
No 303
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-43 Score=366.38 Aligned_cols=215 Identities=26% Similarity=0.410 Sum_probs=189.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.++++||+++|.+++.+||+|+||++++||-++|+|++|||||||+++|+|.++|++|+|.++|.++...+....+..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 89999999999986667999999999999999999999999999999999999999999999999988776666788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~A 236 (457)
+++|...+|.. |+++||.+... ..+++ .+.+++++++|.+ .+.-...||||||||++|||+
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP--DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC--CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 99999999976 99999976432 22333 3445555555531 245567899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+++.+++||||||.||||.+.+++++.+.... +|+|+|++||++..++.+|||++|++|+++++|+++++..+
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 999999999999999999999999999977643 59999999999999999999999999999999999999864
No 304
>KOG0057|consensus
Probab=100.00 E-value=3.3e-42 Score=360.34 Aligned_cols=213 Identities=21% Similarity=0.329 Sum_probs=186.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|+.+ +++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|+++|.++.+...+..|+-|
T Consensus 350 ~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 459999999999972 459999999999999999999999999999999999999 999999999999888778889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~ 235 (457)
|||||+..||++ ||.+|+.|+.. ..+.++ +.++.+..++. + ...+...|||||||||++||
T Consensus 428 g~VPQd~~LFnd-TIl~NI~YGn~--sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 428 GVVPQDSVLFND-TILYNIKYGNP--SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred eEeCCcccccch-hHHHHhhcCCC--CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 999999999987 99999987532 123333 33334444442 1 24567789999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|++.+|+|+++|||||.||..+.+.+++.+.. ...|+|+|++-|+++.+..||+|++|++|++...|+.++++.
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999766 356999999999999999999999999999999999999987
No 305
>KOG0055|consensus
Probab=100.00 E-value=1.8e-42 Score=389.72 Aligned_cols=222 Identities=24% Similarity=0.354 Sum_probs=187.6
Q ss_pred cCceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 87 EEADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
.-.|+++||+++|...+ ..+|+|+||.|++|+.++|+|||||||||++++|.+++.|++|+|+++|.++...+....|+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 35799999999998642 57999999999999999999999999999999999999999999999999998887788899
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--H-HhHcCCCC-----CCCCCCCCChhHHHHHHHHHHh
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--Y-SHVLKLPN-----LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--l-l~~l~L~~-----~~~~~~~LSGGqkQRlsLA~AL 237 (457)
+||.|.|+|.||. .|++||+.|+.. +.+.+++.+..+. + .-...|+. .....-+||||||||++|||||
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 9999999998875 699999987531 1122333222211 1 11112221 2344456999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
+.+|+|||||||||+||+.+++.+.+.++.. ..|+|-|+++|++..++.+|+|++|++|+|++.|+++||....
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence 9999999999999999999999999999886 4689999999999999999999999999999999999998764
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=345.53 Aligned_cols=234 Identities=19% Similarity=0.229 Sum_probs=208.2
Q ss_pred cccCceEEEeeEEEeCCC---------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 85 EEEEADEGKNTEKEELKP---------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~---------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
...+.++++++...|.-+ ...||++|||++++||-+||+|.||||||||=.+|.++++++ |+|++.|+++
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i 350 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI 350 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence 456789999999998421 267999999999999999999999999999999999999876 9999999998
Q ss_pred CCCch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChh
Q psy10858 156 ASIYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN--LERPVKYLSGG 226 (457)
Q Consensus 156 ~~~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGG 226 (457)
...+. ...|+++-.|||+| +|.|.|||.+.+.-+...++ .+..+..+++.++++.+||+. .+++|+++|||
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 75443 34578999999999 68999999999988877764 677888899999999999964 79999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 227 qkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
||||++|||||+.+|++++||||||+||...+.++.++++.+. +.|.+-+++|||+..++. ||+|++|++|+|++.|+
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 9999999999999999999999999999999999999977664 569999999999999986 99999999999999999
Q ss_pred hhhhhhcCCcccHHH
Q psy10858 305 PDGFKSKYSMPKLSD 319 (457)
Q Consensus 305 ~~~l~~~~~~~~l~~ 319 (457)
.+++++.+..++...
T Consensus 511 ~~~if~~P~~~YT~~ 525 (534)
T COG4172 511 TEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHhcCCCcHHHHH
Confidence 999998876555444
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.3e-42 Score=368.87 Aligned_cols=205 Identities=19% Similarity=0.252 Sum_probs=175.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ + .+
T Consensus 320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~ 386 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VK 386 (552)
T ss_pred CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eE
Confidence 358999999999987 7899999999999999999999999999999999999999999999833 2 15
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|||+||++ .+++.+||.||+.+....++.... ..+...+++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 99999997 488889999999876543333221 12345678899995 3 5899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-CeEE-EecChhhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-GRII-AQDSPDGFK 309 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-GkI~-~~gs~~~l~ 309 (457)
|||||||+|||+.+++.++++++.+ .| |||++|||++++.. |||+++|++ |++. ..|+.++++
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~--~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEF--AG-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHC--CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 9999999999999999999998775 24 89999999999975 999999986 5876 567765544
No 308
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=326.07 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=202.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC-ccCCCCc-hhhhcC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-GHPASIY-HKTAGS 165 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G-~~~~~~~-~~~~r~ 165 (457)
++++++|++.+|++ +.||+++||+|.+||.-+|+|||||||||+|..|+|..+|+.|+++++| .++...+ ....|.
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 67999999999999 9999999999999999999999999999999999999999999999999 6666543 345677
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhh--------hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFG--------MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~--------~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~A 236 (457)
.||--||.|..|..+||+|||.+.. .++.....+.+.++++++...+|.. .++.+..||-||||++.|++-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 8999999999999999999998743 2333233455678999999999954 789999999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMP 315 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~ 315 (457)
++++|++|+||||++||--....+.-++++.++ .+.+|+++.|||++++. +++|-+|+.|.|+++|+.+++.+. +
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d---p 237 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND---P 237 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC---c
Confidence 999999999999999999999999999988864 57899999999999976 999999999999999999998765 4
Q ss_pred cHHHHHH
Q psy10858 316 KLSDVFY 322 (457)
Q Consensus 316 ~l~~~f~ 322 (457)
.+.++|+
T Consensus 238 ~ViEvYL 244 (249)
T COG4674 238 KVIEVYL 244 (249)
T ss_pred ceEeeec
Confidence 4555554
No 309
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8.7e-42 Score=326.55 Aligned_cols=189 Identities=23% Similarity=0.289 Sum_probs=159.0
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-EcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-VLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|... .+| +.+.+++.+|+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----------~~~---~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----------PLG---ANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----------ccc---cccccCCcCcHH
Confidence 479999999999999999999999999999999999999999997 655321 122 456788999999
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
||+.++...++.+.++... .+.+.++++. .++++++||||||||++||+||+++|+++||||||+++|+.+++.++
T Consensus 68 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~ 144 (213)
T PRK15177 68 ENARMMASLYGLDGDEFSH---FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ 144 (213)
T ss_pred HHHHHHHHHcCCCHHHHHH---HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 9999987777665443332 2334556643 68899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 263 DLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 263 ~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+.+....+ +.|+|++||+++++. .||++++|++|++++.++.++..+
T Consensus 145 ~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 145 AALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 98543323 468999999999996 499999999999999999887753
No 310
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-43 Score=340.45 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=181.5
Q ss_pred eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhhcCcEEE
Q psy10858 94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTAGSKVGY 169 (457)
Q Consensus 94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~r~~IGy 169 (457)
|+.+++|+ .+| +++|+.+.--+++|.|+||||||||+|||+|+.+|++|.|.++|.-...... ..-+++|||
T Consensus 5 ~~~~~lG~---~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGY 80 (352)
T COG4148 5 NFRQRLGN---FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80 (352)
T ss_pred ehhhhcCc---eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeee
Confidence 45556665 334 5899999878999999999999999999999999999999999976543221 123688999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
|||+-.||+++||+.||.|+.+.. .....+++.+.+|+.+ ++++|.+|||||||||+|+|||+..|++|+|||
T Consensus 81 VFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 81 VFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence 999999999999999999865432 2344677888999976 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|.++||..-+++++-+++.++++ ..-|+.|||.++|+.+ ||+|++|++||+.+.|..+++.+..
T Consensus 155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999999999888765 8899999999999876 9999999999999999999988754
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.7e-42 Score=333.57 Aligned_cols=188 Identities=22% Similarity=0.330 Sum_probs=157.1
Q ss_pred eEeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 106 VLNNCSLVVK-----RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 106 aL~~vs~~I~-----~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+||++.++..+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCC
Confidence 4556666665 79999999999999999999999999999999999773 599999999877889
Q ss_pred CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHH
Q psy10858 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~ 259 (457)
||.|++.+.....+.. .....++++.+++.. .++++.+|||||||||+||+||+.+|+++||||||++||+.++.
T Consensus 77 tv~e~l~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~ 152 (246)
T cd03237 77 TVRDLLSSITKDFYTH----PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152 (246)
T ss_pred CHHHHHHHHhhhcccc----HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999997643322211 123566788889854 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEE--EecChhhhh
Q psy10858 260 RMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRII--AQDSPDGFK 309 (457)
Q Consensus 260 ~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~--~~gs~~~l~ 309 (457)
.++++++.+.+ .|+|||++||+++++.. ||++++|+++..+ ..++|..+.
T Consensus 153 ~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 153 MASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999877654 48999999999999975 9999999765433 455666654
No 312
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-41 Score=399.38 Aligned_cols=214 Identities=19% Similarity=0.266 Sum_probs=186.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.|+++||+++|..+...+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+....|++|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 69999999999653357999999999999999999999999999999999999999999999999998877777899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C----C-CCCCCCCCChhHHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P----N-LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~----~-~~~~~~~LSGGqkQRlsLA~A 236 (457)
||||++.+|+. |++|||.++. ..+++++.+ +++..++ + . ......+||||||||++||||
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~----al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS---EHNDADLWE----ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC---CCCHHHHHH----HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999976 9999997643 234444333 3333332 1 1 234556899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+++|+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus 1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998775 358999999999999999999999999999999999999875
No 313
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.3e-42 Score=372.72 Aligned_cols=204 Identities=26% Similarity=0.380 Sum_probs=182.6
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
+.+|+|+|++|++||+++|+|||||||||||++|+|..++. +|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhhhceeeccccccCccC
Confidence 78999999999999999999999999999999999999885 8999999987642 34567899999999999999
Q ss_pred CHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC------CCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858 181 TIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK------YLSGGQKRRLSFTIAILHKPQLIILDEPC 250 (457)
Q Consensus 181 TV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~------~LSGGqkQRlsLA~ALl~~P~lLILDEPT 250 (457)
||+|||.|.+.+. +++.++..++++++++.++|.+ .|+.++ .|||||||||+||+||+.+|++|+|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999987654 3455666778999999999964 677765 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858 251 VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 251 sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||+.++..+++.++.++++|+|||++||++. ++ +.+|++++|++|+++..|+++++.+
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999998887777999999999996 55 5699999999999999999998854
No 314
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-42 Score=330.33 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=187.8
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhc
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG 164 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r 164 (457)
.+++|+++|++.+|++ +++|+|||++|++||-.+|+||||||||||+++++|..+|++|.+.++|+.....+. .+.|
T Consensus 28 ~~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 28 NEPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CcceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 4578999999999999 999999999999999999999999999999999999999999999999998876544 6789
Q ss_pred CcEEEEcCCC--CCCCCCCHHHHHH--Hhhhh--cC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858 165 SKVGYMPQEL--AMFGELTIKETLN--FFGMI--YG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 165 ~~IGyvpQ~~--~L~~~lTV~EnL~--~~~~l--~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~A 236 (457)
++||||.-+. .+..+.+|+|-+. +++.+ +. ...+...+++..+++.+++.+ ++++..+||-||||||.||||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence 9999998543 3455677887663 22221 22 223456677888999999975 799999999999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~--g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
|+++|++|||||||+|||..+|..+.+.+..+... +.++|+|||+.+|+.. .++++++++|++++.|.
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999997776544 8899999999999977 59999999999998874
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-43 Score=319.10 Aligned_cols=205 Identities=25% Similarity=0.355 Sum_probs=183.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++++...-++ ..+|+|+||+|.+||..+|.||||||||||+|+++-+++|++|++++.|+++...+.+..|.+|+|
T Consensus 4 le~kq~~y~a~~--a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 4 LELKQVGYLAGD--AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred hHHHHHHhhcCC--CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 455555555555 889999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|-|.+.||++ ||++|+.|..+++.... ...+...+++++++++ +++.+.+||||||||++|+|-|..-|+||+||
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999987 99999999887765332 2445667889999975 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCChhHH-hccCeEEEEeCCeE
Q psy10858 248 EPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRI 299 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i-~~~~~~g~TIIisTH~~~ea-~~~dri~im~~GkI 299 (457)
||||+||+.+++.+-+++ +..+++.++|+.+|||-+++ +.+|+++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999994 55568899999999999997 55999999999876
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.4e-41 Score=367.52 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=173.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++|++++|++ + .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++ .+
T Consensus 338 ~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~ 401 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LK 401 (590)
T ss_pred ceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------ee
Confidence 468999999999986 4 4999999999999999999999999999999999999999999874 15
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+||++.+++.+||+||+.+....++ . ...+.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL 476 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL 476 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988889999999987532222 1 124567889999964 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs 304 (457)
|||||+|||+.++..++++++.+.+ .|+|||++|||++++.. |||+++|+ |++...|+
T Consensus 477 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 477 LDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999887755 48999999999999975 99999995 58877776
No 317
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-41 Score=363.21 Aligned_cols=198 Identities=26% Similarity=0.334 Sum_probs=169.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.|+++|++++|++.++.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++++|
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 69999999999764357999999999999999999999999999999999999999999999999988776677789999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA~A 236 (457)
|+||++.+|+ .|++||+.++.. ..++++ +.++++..++. .......+||||||||++||||
T Consensus 400 ~v~Q~~~lf~-~ti~~Ni~~~~~--~~~~~~----i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQHPFLFA-GTIAENIRLARP--DASDAE----IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcCCCcccC-cCHHHHHhccCC--CCCHHH----HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999999986 599999987532 123333 33333333331 1234567899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
|+++|++||||||||+||+.+.+.+++.+.... +++|+|++||+++.+..||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999987753 689999999999999889999875
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-41 Score=399.06 Aligned_cols=215 Identities=20% Similarity=0.294 Sum_probs=187.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 36999999999975334799999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-CC----CCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-NL----ERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-~~----~~~~~~LSGGqkQRlsLA~ 235 (457)
|||||++.||.. |++|||.++. ..+++++. ++++..++ + .+ .....+||||||||++|||
T Consensus 1316 siVpQdp~LF~G-TIreNLd~~~---~~tdeei~----~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130 1316 GIIPQAPVLFSG-TVRFNLDPFN---EHNDADLW----ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred EEECCCCccccc-cHHHHhCcCC---CCCHHHHH----HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence 999999999976 9999997653 23344433 33333322 1 12 3455689999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|+|||||||||+||+.+.+.|.+.++... +++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus 1388 ALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999987753 58999999999999999999999999999999999999865
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4e-41 Score=362.47 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=173.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++. ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+....++++
T Consensus 321 ~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 369999999999742 5699999999999999999999999999999999999999999999999998766666678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CC---C--CCCCCChhHHHHHHHHHHhhcCC
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LE---R--PVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~---~--~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+|+||++.+|+. |+++| . . ....+.+.++++.+++.. .+ . ...+||||||||++|||||+++|
T Consensus 400 ~~v~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 400 SAVFTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred EEEecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999998865 78877 1 1 112334566677777743 21 1 14589999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g 303 (457)
++||||||||+||+.+++.+++.+.. .++.|+|||++||+++.+..||+|++|++|++++..
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999998654 344589999999999888889999999999998763
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6e-41 Score=393.38 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=190.0
Q ss_pred ceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858 89 ADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~ 163 (457)
+++++||+++|+. +++.+|+|||++|++||++||+|||||||||||++|+|+.+ |++|+|+++|+++.. ..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hh
Confidence 5899999999952 23689999999999999999999999999999999999997 789999999988742 34
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC----CCChhHHHHHHHHH
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK----YLSGGQKRRLSFTI 235 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~----~LSGGqkQRlsLA~ 235 (457)
++.+||++|++.+++.+||+|||.+.+.++ +.++++..++++++++.++|.+ +|+.++ .|||||||||+||+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 678999999999999999999999987664 2455566678899999999965 677776 79999999999999
Q ss_pred HhhcCCc-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH--hccCeEEEEeCC-eEEEecChh
Q psy10858 236 AILHKPQ-LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA--NDASEVAFLYKG-RIIAQDSPD 306 (457)
Q Consensus 236 ALl~~P~-lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea--~~~dri~im~~G-kI~~~gs~~ 306 (457)
||+.+|+ ||||||||+|||+.++..++++++.++++|+|||+|||+++.. +.+|++++|++| ++++.|++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 9999997 9999999999999999999999888877899999999999864 459999999997 999999874
No 321
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.1e-41 Score=363.23 Aligned_cols=205 Identities=21% Similarity=0.314 Sum_probs=174.5
Q ss_pred CceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 88 EADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
..|+++|++++|++. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 469999999999752 13699999999999999999999999999999999999999999999999998776656677
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CC------CCCCCCChhHHHHHHHHHHh
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LE------RPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~------~~~~~LSGGqkQRlsLA~AL 237 (457)
+.++|++|++.+|.. |+++|.. ++...+++.++++.+++.. .+ ....+||||||||++|||||
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 899999999999875 7888841 1122344666777777742 22 22467999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~ 302 (457)
+.+|++|||||||++||+.+++.+++. ++..+.+|+|+|++||+++.++.||+|++|++|++++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999886 44455568999999999998888999999999999865
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.6e-41 Score=396.18 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=184.8
Q ss_pred ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC------------------------
Q psy10858 89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI------------------------ 143 (457)
Q Consensus 89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p------------------------ 143 (457)
.|+++||+++|.+. +..||+|+||+|++|+.+||+||||||||||+++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 59999999999642 25799999999999999999999999999999999999998
Q ss_pred ------------------------------CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858 144 ------------------------------SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY 193 (457)
Q Consensus 144 ------------------------------~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~ 193 (457)
++|+|+++|.++...+....|+.||||||++.||+ .|++|||.|+..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-- 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-- 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--
Confidence 69999999999988777788999999999999985 699999998632
Q ss_pred CCCHHHHHHHHHHH--Hh-HcCCCC-CC----CCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858 194 GMDESIWLFQMRKY--SH-VLKLPN-LE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265 (457)
Q Consensus 194 g~~~~~~~~~~~~l--l~-~l~L~~-~~----~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i 265 (457)
..+.+++.+.++.+ .+ ...||. .| ....+||||||||++|||||+++|+|||||||||+||+.+.+.|.+.+
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 23444433332221 11 112332 33 455679999999999999999999999999999999999999999998
Q ss_pred HHHH-hCCcEEEEEcCChhHHhccCeEEEEeC----CeEE-EecChhhhhh
Q psy10858 266 QVFV-GKGRTVIMTTQYIEEANDASEVAFLYK----GRII-AQDSPDGFKS 310 (457)
Q Consensus 266 ~~~~-~~g~TIIisTH~~~ea~~~dri~im~~----GkI~-~~gs~~~l~~ 310 (457)
.... .+++|+|++||+++.++.||+|++|++ |+++ +.|+.++|++
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 7764 368999999999999999999999999 9955 8999999986
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-41 Score=331.82 Aligned_cols=201 Identities=18% Similarity=0.224 Sum_probs=167.4
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchh
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHK 161 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~ 161 (457)
.+++++|+++ +.+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+ ++|.++......
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999762 359999994 999999999999999999999999999999999996 677765432111
Q ss_pred hh--cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 162 TA--GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 162 ~~--r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
.. ...++|++|...+++. ++.+++.+.. ........+.++++.+++.. .++.+.+||||||||++||+||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 11 1248999999988874 7888886542 12233456778899999965 68899999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~ 302 (457)
.+|+++||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++| +|++.+.
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~ 219 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAY 219 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcc
Confidence 9999999999999999999999999988877779999999999999975 9999999 4666543
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=366.65 Aligned_cols=201 Identities=20% Similarity=0.327 Sum_probs=174.7
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.+++. .+
T Consensus 310 ~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred CceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 458999999999987 88999999999999999999999999999999999999999999998531 26
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 167 VGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 167 IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+||++|+. .+.+..|+.+++... . ......++..+++.+++. ..++++++|||||||||+||+||+.+|+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARL---A---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHh---C---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999974 355667888776321 1 122345677889999995 3689999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFK 309 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~ 309 (457)
+|||||||+|||+.+++.+++++..+ .| |||+||||++++.. |||+++|++|+++ +.|+.++..
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999998775 34 99999999999975 9999999999997 789888764
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-40 Score=336.75 Aligned_cols=235 Identities=21% Similarity=0.297 Sum_probs=205.2
Q ss_pred cCceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCc
Q psy10858 87 EEADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~ 159 (457)
.+.++++|++..|+. +...|+++|||+|++||.++|+|.||||||-+...|+|+++- -+|+|.++|.++-..+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 468999999999962 237899999999999999999999999999999999999864 4689999999875443
Q ss_pred hh----hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHH
Q psy10858 160 HK----TAGSKVGYMPQEL--AMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQK 228 (457)
Q Consensus 160 ~~----~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqk 228 (457)
.. ....+|+++||+| +|.|-.|+...+.-..++ +|++.+..++++.++++.++++. ++.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 22 2346899999999 677878887777655544 57888999999999999999963 5889999999999
Q ss_pred HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
|||.||+||+.+|++||.||||++||...+.+|+++++.++ +.|++++++|||+..++. +|||++|.+|++++.|+.+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 99999999999999999999999999999999999987765 459999999999999976 9999999999999999999
Q ss_pred hhhhcCCcccHHHHH
Q psy10858 307 GFKSKYSMPKLSDVF 321 (457)
Q Consensus 307 ~l~~~~~~~~l~~~f 321 (457)
.++.....++.....
T Consensus 244 ~lF~~PqHpYTr~Ll 258 (534)
T COG4172 244 TLFAAPQHPYTRKLL 258 (534)
T ss_pred HHhhCCCChHHHHHH
Confidence 999987776655543
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.8e-41 Score=395.12 Aligned_cols=208 Identities=23% Similarity=0.307 Sum_probs=172.5
Q ss_pred ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CccCCCCchhhhcCc
Q psy10858 89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL-GGHPASIYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~-G~~~~~~~~~~~r~~ 166 (457)
.|+++||+++|+.. +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++ |.++...+....|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 69999999999852 2469999999999999999999999999999999999999999999994 577665555566789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh----------cCC---C-------------------------------------
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI----------YGM---D------------------------------------- 196 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l----------~g~---~------------------------------------- 196 (457)
||||+|++.+|+ .||+||+.++... ++. +
T Consensus 462 Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 999999999997 4999999985310 000 0
Q ss_pred -HHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 197 -ESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 197 -~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
.....+.+.++++.+++. . .++.+.+||||||||++|||||+++|+|||||||||+||+.+++.+++
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 000123344555555432 1 246788999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858 264 LLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKG 297 (457)
Q Consensus 264 ~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~G 297 (457)
.++.+++ +|+|+|++||+++.++.||+|++|++|
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9887764 589999999999999889999999986
No 327
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.3e-41 Score=394.99 Aligned_cols=215 Identities=21% Similarity=0.278 Sum_probs=187.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 36999999999976435799999999999999999999999999999999999999999999999999888777889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-CCC----CCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-NLE----RPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-~~~----~~~~~LSGGqkQRlsLA~ 235 (457)
+|+||++.+|+. |+++||..+. ..+++++. ++++..++ + .+| ....+||||||||++|||
T Consensus 1363 ~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~----~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1363 TIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVW----WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred eEECCCCcccCc-cHHHHcCccc---CCCHHHHH----HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence 999999999986 9999997432 23444433 33333332 1 133 345679999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus 1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~-~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ-FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998765 358999999999999999999999999999999999999875
No 328
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-40 Score=394.34 Aligned_cols=214 Identities=18% Similarity=0.272 Sum_probs=186.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++||
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999764356999999999999999999999999999999999999999999999999998877778899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-CC----CCCCCCChhHHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-LE----RPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-~~----~~~~~LSGGqkQRlsLA~A 236 (457)
|+||++.||+. ||++||..+. ..++++ +.++++..++. . +| ....+||||||||++||||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~---~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL---EASSAE----VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc---CCCHHH----HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 99999999976 9999996532 233443 34444444432 1 23 3446799999999999999
Q ss_pred hhcC-CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 237 ILHK-PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 237 Ll~~-P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|+++ |+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||+|++|++|+|++.|++++++++
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPALDRQIQATVMSA-FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH-CCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9996 8999999999999999999999998765 357999999999999999999999999999999999999864
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.2e-40 Score=362.98 Aligned_cols=204 Identities=24% Similarity=0.280 Sum_probs=174.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+|+++||+++|++ +.+++|+||+|++|+++||+||||||||||||+|+|+++|++|+|++ |.. -+
T Consensus 317 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------~~ 383 (635)
T PRK11147 317 KIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------LE 383 (635)
T ss_pred CceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----------cE
Confidence 458999999999987 78999999999999999999999999999999999999999999998 532 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
|||++|+. .+++.+||.||+.+........ .....+..++..+++. . .++++++|||||||||+||+||+.+|++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999986 5889999999998743211111 1134567788888884 3 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe-CCeEEE-ecChhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-KGRIIA-QDSPDGF 308 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~-~GkI~~-~gs~~~l 308 (457)
|||||||+|||+.+++.++++++.. +.|||+||||++++.. ||++++|+ +|++.. .|+-++.
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999988664 4599999999999975 99999998 899865 4554443
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.5e-41 Score=357.85 Aligned_cols=185 Identities=25% Similarity=0.343 Sum_probs=157.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|++. +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++... ....|+.|
T Consensus 333 ~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i 410 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRI 410 (529)
T ss_pred ceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhhe
Confidence 359999999999753 4699999999999999999999999999999999999999999999999999877 77788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-CC----CCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-LE----RPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-~~----~~~~~LSGGqkQRlsLA~ 235 (457)
|||||++.+|+. |++||+.++.. ..++++. .++++..++ ++ .| ....+||||||||++|||
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~i----~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGRP--DATDEEL----WAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred EEEccCcccccc-cHHHHHhccCC--CCCHHHH----HHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 999999999976 99999987531 2233333 333443333 21 23 345679999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~ 282 (457)
||+++|++||||||||+||+.+.+.+.+.+... .+++|+|++||++
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 999999999999999999999999999998764 4689999999974
No 331
>KOG0055|consensus
Probab=100.00 E-value=2.1e-40 Score=373.11 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=192.3
Q ss_pred ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
-|+++||+++|... +..|++|+||+|++|+-+||+|||||||||.+.+|-.++.|++|.|.+||.++...+...+|++|
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 59999999999753 36799999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--H-hHcCCCC-CC----CCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--S-HVLKLPN-LE----RPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l-~~l~L~~-~~----~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|.|.|+|.||.. |++||+.|+ ..+.+.+++.++++.+ - -...||. .| .+..+||||||||++||||+++
T Consensus 1067 ~lVsQEP~LF~~-TIrENI~YG--~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYG--SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchhhcc-cHHHHHhcc--CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999999965 999999987 2225555544433221 1 1234553 34 5566899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
||+||||||.||+||.++.+.+-+.++..+ .|+|.|+++|.+..++.||.|+||++|+|++.|+.++|.++.
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCC
Confidence 999999999999999999999999999864 689999999999999999999999999999999999999853
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.8e-40 Score=296.59 Aligned_cols=143 Identities=31% Similarity=0.404 Sum_probs=134.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++++|++++|++ ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|. +.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 478999999987 68999999999999999999999999999999999999999999999873 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
+|| ||+||+||++|||||+.+|+++|||||
T Consensus 68 ~~~--------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 68 FEQ--------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred Ecc--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
|+|||+.+++.+++.++.+ +.|||++||+++++.. ||++++|++||
T Consensus 98 ~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999998765 4799999999999965 89999999986
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-40 Score=358.66 Aligned_cols=204 Identities=20% Similarity=0.251 Sum_probs=167.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++||+++||+ +.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|+++|. .++|
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~ 67 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLA 67 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 5899999999998 88999999999999999999999999999999999999999999999763 1378
Q ss_pred EEcCCCCCCCCCCHHHHHHH-----------------------hhhhcC----CCHHHHHHHHHHHHhHcCCC--CCCCC
Q psy10858 169 YMPQELAMFGELTIKETLNF-----------------------FGMIYG----MDESIWLFQMRKYSHVLKLP--NLERP 219 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~-----------------------~~~l~g----~~~~~~~~~~~~ll~~l~L~--~~~~~ 219 (457)
|++|+...+ ..|+.+++.- +..+.+ ........++..+++.+++. ..+++
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864332 2455443321 000100 11112345678889999995 36899
Q ss_pred CCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 220 ~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
+.+|||||||||+||+||+.+|+||||||||+|||+.++..+.++++.. +.|||+||||++++.. ||++++|++|+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999987654 5699999999999975 99999999999
Q ss_pred EE-EecChhhhh
Q psy10858 299 II-AQDSPDGFK 309 (457)
Q Consensus 299 I~-~~gs~~~l~ 309 (457)
+. ..|+.+...
T Consensus 224 i~~~~g~~~~~~ 235 (638)
T PRK10636 224 LFEYTGNYSSFE 235 (638)
T ss_pred EEEecCCHHHHH
Confidence 96 467665544
No 334
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=311.72 Aligned_cols=235 Identities=27% Similarity=0.357 Sum_probs=190.5
Q ss_pred ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
|+++.|+++.|.++ .+.||+++|++|++|+++.++|.||||||||++.|+|.+.|++|+|.++|.+++..+......
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 56788888888753 267999999999999999999999999999999999999999999999999998776655667
Q ss_pred cEEEEcCCC--CCCCCCCHHHHHHHhhhh---cCCCHH---HHHHHHHHHHhHcCC--C-CCCCCCCCCChhHHHHHHHH
Q psy10858 166 KVGYMPQEL--AMFGELTIKETLNFFGMI---YGMDES---IWLFQMRKYSHVLKL--P-NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 166 ~IGyvpQ~~--~L~~~lTV~EnL~~~~~l---~g~~~~---~~~~~~~~ll~~l~L--~-~~~~~~~~LSGGqkQRlsLA 234 (457)
.++-|+|+| ..++.||+.||+.+...- +|+... ..++...+.+..+++ + .++.++.-|||||||-|+++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 788999999 479999999999875432 334332 222233344555554 3 37889999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
.|-++.|+||+|||-|++|||.....+++. -+...+.+.|.+||||+|+.|- +.+|.++|++|+|+-+-+-++ +...
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~-k~~L 239 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE-KASL 239 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc-ccCC
Confidence 999999999999999999999999999999 5555566899999999999985 589999999999997755433 2222
Q ss_pred CcccHHHHHHhh
Q psy10858 313 SMPKLSDVFYKI 324 (457)
Q Consensus 313 ~~~~l~~~f~~~ 324 (457)
....+.+.|.+.
T Consensus 240 ~v~dli~~F~~~ 251 (263)
T COG1101 240 TVLDLIQMFEKI 251 (263)
T ss_pred cHHHHHHHHHHH
Confidence 334555566543
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.4e-39 Score=380.02 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=185.9
Q ss_pred ceEEEeeEEEeCC-----------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccC
Q psy10858 89 ADEGKNTEKEELK-----------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHP 155 (457)
Q Consensus 89 ~Iei~nlsk~yg~-----------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~ 155 (457)
.+..+||++.... .++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988731 125799999999999999999999999999999999999863 789999999765
Q ss_pred CCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCC-----CCCChh
Q psy10858 156 ASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPV-----KYLSGG 226 (457)
Q Consensus 156 ~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~-----~~LSGG 226 (457)
.. ...++.+|||+|++.+++.+||+|||.|.+.++ ..+.++..++++++++.++|.+ .++.+ +.||||
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 32 234567999999999999999999999877553 2344555667889999999965 56665 589999
Q ss_pred HHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeC-CeEEEec
Q psy10858 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYK-GRIIAQD 303 (457)
Q Consensus 227 qkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~-GkI~~~g 303 (457)
|||||+||+||+.+|++|||||||+|||+.++..++++++.++++|+|||+|||+++ ++ +.+|++++|++ |+++..|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999998888888999999999998 45 45999999996 8999999
Q ss_pred Chh
Q psy10858 304 SPD 306 (457)
Q Consensus 304 s~~ 306 (457)
++.
T Consensus 1104 ~~~ 1106 (1470)
T PLN03140 1104 PLG 1106 (1470)
T ss_pred Ccc
Confidence 874
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.4e-39 Score=354.78 Aligned_cols=204 Identities=20% Similarity=0.225 Sum_probs=166.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|. ..++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEEE
Confidence 7999999999998 88999999999999999999999999999999999999999999998752 1367
Q ss_pred EEcCCCCCCCCCCHHHHHH------------------------------Hhhhhc----CCCHHHHHHHHHHHHhHcCCC
Q psy10858 169 YMPQELAMFGELTIKETLN------------------------------FFGMIY----GMDESIWLFQMRKYSHVLKLP 214 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~------------------------------~~~~l~----g~~~~~~~~~~~~ll~~l~L~ 214 (457)
|++|.+......+|.+++. .+..+. .........++..+++.+++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7777543322345554431 111110 011112345677889999986
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEE
Q psy10858 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAF 293 (457)
Q Consensus 215 ~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~i 293 (457)
.++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+++++..+ +.|||+||||++++.. ||+|++
T Consensus 150 -~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~ 225 (635)
T PRK11147 150 -PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVD 225 (635)
T ss_pred -CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEE
Confidence 48899999999999999999999999999999999999999999999998765 3599999999999975 999999
Q ss_pred EeCCeEEE-ecChhhhh
Q psy10858 294 LYKGRIIA-QDSPDGFK 309 (457)
Q Consensus 294 m~~GkI~~-~gs~~~l~ 309 (457)
|++|+++. .|+.++..
T Consensus 226 L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 226 LDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EECCEEEEecCCHHHHH
Confidence 99999974 57776654
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.9e-39 Score=383.10 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=184.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|..+...+|+||||+|++||.+||+|+||||||||+++|.|+++ ++|+|+++|.++...+....|++|
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 3699999999997544689999999999999999999999999999999999997 799999999999887777789999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--------CCCC----CCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--------NLER----PVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--------~~~~----~~~~LSGGqkQRlsLA~ 235 (457)
+|+||++.+|+. |+++||..+. ..++++ +.++++..++. .+|. ...+||||||||++|||
T Consensus 1295 s~IpQdp~LF~G-TIR~NLdp~~---~~tdee----i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1295 GVIPQKVFIFSG-TFRKNLDPYE---QWSDEE----IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred EEEeCCCccCcc-CHHHHhCccc---CCCHHH----HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 999999999986 9999996542 223333 44445555441 1233 34479999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||+++|+|||||||||+||+.+.+.|.+.++.. .+++|||++||.++.+..||||++|++|+|++.|+|+++++
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS-FSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999998775 35799999999999999999999999999999999999985
No 338
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-39 Score=302.03 Aligned_cols=229 Identities=20% Similarity=0.255 Sum_probs=202.5
Q ss_pred CceEEEeeEEEeCC-------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858 88 EADEGKNTEKEELK-------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160 (457)
Q Consensus 88 ~~Iei~nlsk~yg~-------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~ 160 (457)
+.++++|++|.|.. ....|++.|||++++|+..|++|.||||||||.|||+|+++|++|+|.++|+.+...+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56899999999853 23569999999999999999999999999999999999999999999999998865554
Q ss_pred hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCC-CC-CCCCCCCCChhHHHHHHHHH
Q psy10858 161 KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKL-PN-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 161 ~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L-~~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
....++|-++||++ ++.|.+.+-+-|....++. .+......+++.+.+..+|| ++ ++-+++.||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 55567899999998 4777788888887776653 56777778889999999999 44 88999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||+.+|+|+|.||..++||...|.++.++ ++...+.|.+-|.|+.++..++. +|.|++|++|++++.|++++++..+.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~ 242 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCc
Confidence 99999999999999999999999999999 66656679999999999999986 89999999999999999999998765
Q ss_pred ccc
Q psy10858 314 MPK 316 (457)
Q Consensus 314 ~~~ 316 (457)
.+-
T Consensus 243 ~~~ 245 (267)
T COG4167 243 HEL 245 (267)
T ss_pred cHH
Confidence 443
No 339
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-39 Score=311.81 Aligned_cols=197 Identities=24% Similarity=0.380 Sum_probs=178.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+.||+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.+.|+-..- .. + .-.+-+++|.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l-----i~--l-----g~Gf~pelTGr 107 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-----IE--L-----GAGFDPELTGR 107 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh-----hh--c-----ccCCCcccchH
Confidence 679999999999999999999999999999999999999999999998853211 00 1 12355789999
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
||+.+.+.+.|++.++++++++++.+.-+|.+ .+.+++++|.||+-||++|.|...+|++||+||-.+--|+.-+++=.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999954 89999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 263 DLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 263 ~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
+.+....++++|||++|||++.+++ |||+++|++|++...|+++++...|
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y 238 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence 8888887788999999999999976 9999999999999999999987654
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-39 Score=302.47 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=137.0
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcC
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ 172 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ 172 (457)
.|++++|++ +.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcc
Confidence 589999998 8899984 999999999999999999999999999999999999999873 3889998
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCC
Q psy10858 173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVG 252 (457)
Q Consensus 173 ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsG 252 (457)
+.. ||||||||++|||||+.+|+++||||||+|
T Consensus 69 ~~~-----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 69 YID-----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred cCC-----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 653 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHhc-cCeEEEEeCCeEEEe--cChhh
Q psy10858 253 VDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ--DSPDG 307 (457)
Q Consensus 253 LDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~~-~dri~im~~GkI~~~--gs~~~ 307 (457)
||+.+++.+++.+..+.+++ .|||++||+++++.. ||++++|+++-.+.. |.|..
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999987766664 999999999999975 999999998765433 55543
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.7e-39 Score=354.39 Aligned_cols=202 Identities=20% Similarity=0.298 Sum_probs=168.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|+++.|++. ..+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|++++ +.+
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 3689999999999641 5799999999999999999999999999999999999999999999853 246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHh-hhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 167 VGYMPQELAMFGELTIKETLNFF-GMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~-~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
|||++|++ +..+++.++..+. ...+ +.. .+++..+++.+++. . .++++.+|||||||||+||+||+.+|+
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 99999986 2445666664332 1211 222 24567789999995 2 688999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFK 309 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~ 309 (457)
+|||||||+|||+.+++.+++.+... .| |||++|||++++.. |||+++|++|+++ ..|++++..
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999998886553 34 99999999999975 9999999999998 678776643
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-39 Score=290.25 Aligned_cols=155 Identities=39% Similarity=0.596 Sum_probs=142.2
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp 171 (457)
+++++++|.+ +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++........++.++|++
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 6799999987 68999999999999999999999999999999999999999999999998765433334457899999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
| ||+||+||++||+||+.+|+++||||||+
T Consensus 80 q--------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 80 Q--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred e--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
|||+.++..+++.+....+++.|+|++||+++++.. ||++++|++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999987776668999999999999976 79999999875
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7e-39 Score=352.51 Aligned_cols=192 Identities=21% Similarity=0.260 Sum_probs=161.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|.++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++++
T Consensus 450 ~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i 517 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKL 517 (659)
T ss_pred CeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcE
Confidence 479999999999632 5799999999999999999999999999999999999999999998742 3579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-CCC---------CCCCCChhHHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-LER---------PVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-~~~---------~~~~LSGGqkQRlsLA~A 236 (457)
||+||++.+++. |++||+.+.....+.. .....+++.++++.+++.. .++ ...+||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999998877 9999998754322111 0111234567777788743 333 247899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~ 295 (457)
|+++|++|||||||+|||+.+++.+.+.++. .|+|||++||+++++..||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 9999999999999999999999999988754 4899999999999998899999996
No 344
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-39 Score=375.53 Aligned_cols=206 Identities=25% Similarity=0.265 Sum_probs=176.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll----~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~ 179 (457)
+.+|+|||+++++||+++|+||||||||||||+|+|+. +|++|+|.++|.++.... ...++.++|++|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 67999999999999999999999999999999999996 579999999998764322 2345679999999999999
Q ss_pred CCHHHHHHHhhhhc-------CCCHHHHHHH-HHHHHhHcCCCC-CCC-----CCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 180 LTIKETLNFFGMIY-------GMDESIWLFQ-MRKYSHVLKLPN-LER-----PVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 180 lTV~EnL~~~~~l~-------g~~~~~~~~~-~~~ll~~l~L~~-~~~-----~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
+||+|||.|.+.++ +.++++..++ ++.+++.++|.+ .++ .++.|||||||||+||+||+.+|++|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999977654 2334443333 456889999964 444 457799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCh-hHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYI-EEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~-~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.++..+++.++.+.+ .|+|||+++|+. +++. .+|++++|++|+++..|+++++.+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999888765 499999999997 5665 599999999999999999988743
No 345
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=331.34 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=189.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
-.+.+++++..=.+.++++|+++||++.+||.+||+||||||||||.|+|.|..+|++|.|.+||-++.+.+.+...++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 46999999987666568999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHcCCCC-CCC----CCCCCChhHHHHHHHHHHh
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVLKLPN-LER----PVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l~L~~-~~~----~~~~LSGGqkQRlsLA~AL 237 (457)
||+||+..||+. ||.||+.-+.. ..+.+.+-+ .++++. +.++. .|. --..||||||||++|||||
T Consensus 413 GYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred CcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 999999999986 99999964331 122222211 133333 23432 343 3457999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
-.+|.+++||||-|+||......+.+.+...+++|.|+|++||....+..+|+|++|++|++...|+.++++.+
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999998989999999999999999999999999999999999999998765
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-38 Score=298.77 Aligned_cols=222 Identities=26% Similarity=0.336 Sum_probs=195.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCch-hhhc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYH-KTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~-~~~r 164 (457)
.+++++||+.+..+. +.+|++|||+|++||+++|+||||||||||.+.|+|.- .+++|+|.++|+++...+. +..|
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 479999999999872 38999999999999999999999999999999999995 7899999999999987654 3456
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCC--HHHHHHHHHHHHhHcCCCC--CCCCCC-CCChhHHHHHHHHHHhh
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIY-GMD--ESIWLFQMRKYSHVLKLPN--LERPVK-YLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~--~~~~~~~~~~ll~~l~L~~--~~~~~~-~LSGGqkQRlsLA~ALl 238 (457)
..|...||.|.=++..|+.+.|....... +.. ..+..+.+++.++.++++. ++|.++ .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 78999999999999999999998655432 211 2356677888899999954 788887 59999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+|++.|||||-||||..+-+.+-+.++.+++.|.+++++||+-..+.. .|+|.+|-+|+|+.+|.| ++...
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 9999999999999999999999999999999999999999999998876 599999999999999999 66543
No 347
>KOG0061|consensus
Probab=100.00 E-value=4e-38 Score=343.55 Aligned_cols=236 Identities=25% Similarity=0.391 Sum_probs=201.9
Q ss_pred CceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchh
Q psy10858 88 EADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~ 161 (457)
.-+..++++....++ .+.+|+|||.++++||+.||+||+||||||||++|+|.... .+|+|++||+.... .
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---R 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch---h
Confidence 346777888777553 37899999999999999999999999999999999999974 79999999965432 3
Q ss_pred hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC-----CCChhHHHHHH
Q psy10858 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK-----YLSGGQKRRLS 232 (457)
Q Consensus 162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~-----~LSGGqkQRls 232 (457)
..++..|||.|++.+++.+||+|+|.|.+.++ .++.++.+++++++++.++|.. .|..++ .+||||||||+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence 45688999999999999999999999998875 2467888999999999999975 677775 59999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||.-|+++|.||+|||||||||.....++.++++.++++|+|||+|=|... ++ ...|++++|.+|+++..|+++++.+
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999999999999998888778999999999986 35 4589999999999999999987654
Q ss_pred cC---C-----cccHHHHHHhhhc
Q psy10858 311 KY---S-----MPKLSDVFYKITN 326 (457)
Q Consensus 311 ~~---~-----~~~l~~~f~~~~~ 326 (457)
-+ + ..+-.|.++++..
T Consensus 261 ff~~~G~~~P~~~Npadf~l~l~s 284 (613)
T KOG0061|consen 261 FFSSLGFPCPELENPADFLLDLLS 284 (613)
T ss_pred HHHhCCCCCCCcCChHHHHHHHHc
Confidence 22 2 2244566665544
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-38 Score=346.60 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=161.7
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchh
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHK 161 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~ 161 (457)
++++++||.+ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++......
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3479999862 46999999 9999999999999999999999999999999999997 888776432111
Q ss_pred --hhcCcEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858 162 --TAGSKVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 162 --~~r~~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
..+.+++|.+|....++. .||.|++... +...++.++++.+++.. .++.+.+|||||||||+||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA 225 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 112346777765544433 3999998631 23456788899999965 79999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG 297 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G 297 (457)
||+.+|++|||||||++||+..+..++++++.+++ |+|||++||+++++.. ||++++|+++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999888877 9999999999999976 9999999863
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.7e-38 Score=292.67 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=134.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+|+|+||+|++|++++|+||||||||||||+|.+ ++|++.++|... . ..+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~-~----~~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP-K----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc-c----cccccEEEEhH-----------
Confidence 679999999999999999999999999999999863 799999977532 1 12346889887
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC--CceEEEeCCCCCCCHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK--PQLIILDEPCVGVDPLVRK 259 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLILDEPTsGLDp~~r~ 259 (457)
.++++.+++.. .++++.+||||||||++||+||+.+ |++|||||||+|||+..++
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~ 126 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN 126 (176)
T ss_pred ---------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence 13466777742 6889999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 260 RMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 260 ~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
.+++.++.++++|+|||++||+++++..||++++|.+|+.
T Consensus 127 ~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 127 QLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999988776679999999999999877999999977654
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.3e-38 Score=367.52 Aligned_cols=204 Identities=27% Similarity=0.331 Sum_probs=176.1
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
+.+|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.++... ..++.+||++|++.+++.+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF---VPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh---cccceeEEecccccCCCcC
Confidence 67999999999999999999999999999999999999998 99999999877432 2357899999999999999
Q ss_pred CHHHHHHHhhhhcCCC----------HHHH------------------------HHHHHHHHhHcCCCC-C-----CCCC
Q psy10858 181 TIKETLNFFGMIYGMD----------ESIW------------------------LFQMRKYSHVLKLPN-L-----ERPV 220 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~----------~~~~------------------------~~~~~~ll~~l~L~~-~-----~~~~ 220 (457)
||+|||.|.++.++.. .++. ...++.+++.++|.+ . ++.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999987765321 1110 012466888999964 2 5677
Q ss_pred CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCh-hHHh-ccCeEEEEeCC
Q psy10858 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYI-EEAN-DASEVAFLYKG 297 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~-~ea~-~~dri~im~~G 297 (457)
+.|||||||||+||+||+++|++|+|||||+|||+.++.++++.++.+.+ .|+|||+++|+. +++. .+|+|++|.+|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 89999999999999999999999999999999999999999999888755 589999999996 4664 59999999999
Q ss_pred eEEEecChhhhhh
Q psy10858 298 RIIAQDSPDGFKS 310 (457)
Q Consensus 298 kI~~~gs~~~l~~ 310 (457)
+++..|+++++..
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999988864
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.1e-37 Score=365.13 Aligned_cols=207 Identities=21% Similarity=0.317 Sum_probs=173.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 701 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SV 701 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EE
Confidence 37999999999975335799999999999999999999999999999999999999999999875 49
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH--HHHhHcCC-CC-----CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR--KYSHVLKL-PN-----LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~--~ll~~l~L-~~-----~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+++ .||+||+.++.. .+++...+.++ .+.+.++. +. .+++..+||||||||++||||++.
T Consensus 702 ~yv~Q~~~l~~-~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 702 AYVPQQAWIQN-DSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred EEEcCCccccC-CcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999875 699999987532 22322222221 11222222 21 356788999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVF--VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~--~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|+++|||||||+||+...+.+++.+... ..+|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 99999999999999999999999985432 2357999999999999988999999999999999999998754
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-37 Score=360.56 Aligned_cols=207 Identities=22% Similarity=0.300 Sum_probs=170.1
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..++++|++++|+.. ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. ..++.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 469999999999742 25799999999999999999999999999999999999999998763 13568
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--HhHc-CCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--SHVL-KLPN-----LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l~~l-~L~~-----~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
|+||+|++.+++. |++||+.|+.. .++++..+.++.. .+.+ .++. ......+||||||||++||||+.
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 9999999999875 99999987642 2333333322211 1111 1222 23456679999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+|+|+|||||||+||+...+++++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+.+++..+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999999999998876 5543 368999999999999888999999999999999999998754
No 353
>KOG0056|consensus
Probab=100.00 E-value=3.2e-37 Score=318.34 Aligned_cols=219 Identities=21% Similarity=0.334 Sum_probs=186.9
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
-|+++||++.|..+ +++|+||||++.+|+.++|+||||+||||+|++|..+...++|.|.++|+++........|+.||
T Consensus 537 ~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 59999999999864 89999999999999999999999999999999999999999999999999987655566889999
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHH--HH-HHhHcCCCC-C----CCCCCCCChhHHHHHHHHHHhhcC
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM--RK-YSHVLKLPN-L----ERPVKYLSGGQKRRLSFTIAILHK 240 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~--~~-ll~~l~L~~-~----~~~~~~LSGGqkQRlsLA~ALl~~ 240 (457)
.||||..||++ |+..|+.|. +.. -+.+++.+++ .. ....+++|+ . .++.-.|||||||||+|||+++..
T Consensus 616 VVPQDtvLFNd-TI~yNIrya-k~~-AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 616 VVPQDTVLFND-TILYNIRYA-KPS-ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cccCcceeecc-eeeeheeec-CCC-CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 99999999987 999999864 222 2233322222 11 223456653 2 345557999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|.+++|||.||+||....+.|-..+..+++ ++|-|++.|.+..+-.||.|+++++|+|++.|..+++..+.
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhcc
Confidence 999999999999999999999888888764 78888899999999999999999999999999999998763
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-37 Score=343.25 Aligned_cols=217 Identities=17% Similarity=0.153 Sum_probs=165.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEEcCccCCCCch---
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK---NISQGEIWVLGGHPASIYH--- 160 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll---~p~sG~I~i~G~~~~~~~~--- 160 (457)
..+|+++|++++|++ +.+|+|+||+|++|+++||+|+||||||||||+|+|.. .|++|+|.+.++.+.....
T Consensus 175 ~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 175 IKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred ceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 457999999999987 78999999999999999999999999999999999964 5788999866654311100
Q ss_pred -----------hhhcCcEEEEcCCCCCCCCCCHHHH-----------------HHHhhhhcC-CCHHHHHHHHHHHHhHc
Q psy10858 161 -----------KTAGSKVGYMPQELAMFGELTIKET-----------------LNFFGMIYG-MDESIWLFQMRKYSHVL 211 (457)
Q Consensus 161 -----------~~~r~~IGyvpQ~~~L~~~lTV~En-----------------L~~~~~l~g-~~~~~~~~~~~~ll~~l 211 (457)
...+..++|++|++.+... ++.++ +.-....++ .......+++..++..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 0112346778876543221 11111 110001111 11113455677788888
Q ss_pred CCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-c
Q psy10858 212 KLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A 288 (457)
Q Consensus 212 ~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~ 288 (457)
++. . .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++++.+ +.|||+||||++++.. |
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhC
Confidence 885 3 58899999999999999999999999999999999999999999999998664 7899999999999976 9
Q ss_pred CeEEEEeCCeEE-EecChhhhh
Q psy10858 289 SEVAFLYKGRII-AQDSPDGFK 309 (457)
Q Consensus 289 dri~im~~GkI~-~~gs~~~l~ 309 (457)
|++++|++|++. ..|+.+++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHH
Confidence 999999999996 577765543
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.8e-37 Score=326.39 Aligned_cols=204 Identities=27% Similarity=0.321 Sum_probs=173.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|.++++++.||+ +++++|+||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+ .-+|
T Consensus 2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-----------~~~v 68 (530)
T COG0488 2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----------GLRV 68 (530)
T ss_pred ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-----------CceE
Confidence 47999999999988 9999999999999999999999999999999999999999999998743 1369
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-hcCC-----------------------------CHHHHHHHHHHHHhHcCCCCCC
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGM-IYGM-----------------------------DESIWLFQMRKYSHVLKLPNLE 217 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~-l~g~-----------------------------~~~~~~~~~~~ll~~l~L~~~~ 217 (457)
||++|++.+.+..||.+.+..... ++.+ ..-..+.++..++..++++..+
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999999999999999998754321 1000 0011235666777778886558
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK 296 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~ 296 (457)
+++++||||||.||+||+||+.+|++|||||||+.||..+...+-+.+... +| |||+||||-.++.. |++|+-++.
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 999999999999999999999999999999999999999999999998753 56 99999999999976 999999999
Q ss_pred CeEEEe-cChhh
Q psy10858 297 GRIIAQ-DSPDG 307 (457)
Q Consensus 297 GkI~~~-gs~~~ 307 (457)
|++... |.-+.
T Consensus 226 g~l~~y~Gny~~ 237 (530)
T COG0488 226 GKLTPYKGNYSS 237 (530)
T ss_pred CceeEecCCHHH
Confidence 988644 44333
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-37 Score=281.23 Aligned_cols=225 Identities=21% Similarity=0.270 Sum_probs=184.3
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC-----CCchh
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA-----SIYHK 161 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~-----~~~~~ 161 (457)
.|.+++.+++|.||. ....+||||++.+||+.||+|.+|||||||++||+|-+.|++|+|.+.-.+-. .....
T Consensus 4 ~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 4 KPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred CcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 368999999999998 78899999999999999999999999999999999999999999988543211 11111
Q ss_pred ----hhcCcEEEEcCCCC--CCCCCC----HHHHHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHH
Q psy10858 162 ----TAGSKVGYMPQELA--MFGELT----IKETLN-FFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQK 228 (457)
Q Consensus 162 ----~~r~~IGyvpQ~~~--L~~~lT----V~EnL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqk 228 (457)
..|..-|+|.|+|. |-...+ +-|-+. .+.+.|| .+++....+++.++++. .|..|.++|||||
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 12445799999984 332233 333332 2344444 35566778889998853 6889999999999
Q ss_pred HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~ 306 (457)
||+.|||-|+..|+++++||||.|||...+..+.++++.+ ++-|.+++|+|||+..+.. ++|..+|++|++++.|-.+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 9999999999999999999999999999999999997665 4559999999999999986 8999999999999999999
Q ss_pred hhhhcCCcccH
Q psy10858 307 GFKSKYSMPKL 317 (457)
Q Consensus 307 ~l~~~~~~~~l 317 (457)
.++.....++.
T Consensus 238 rvLDDP~hPYT 248 (258)
T COG4107 238 RVLDDPHHPYT 248 (258)
T ss_pred ccccCCCCchH
Confidence 88877665543
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-36 Score=357.18 Aligned_cols=190 Identities=25% Similarity=0.365 Sum_probs=159.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +||||+|++.+++. ||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCc-cHH
Confidence 4589999999999999999999999999999999999999999999976 49999999999875 999
Q ss_pred HHHHHhhhhcCCCHHHHHHH-----HHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQ-----MRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp 255 (457)
||+.|+... +.....+. +.+.++.+... ..+.++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus 505 eNI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 505 DNIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999976421 22111111 12222222221 13556889999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 256 LVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 256 ~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
..++++++. +..+. +|+|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999985 55543 58999999999999988999999999999999999998753
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-36 Score=359.45 Aligned_cols=202 Identities=22% Similarity=0.350 Sum_probs=170.2
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcC
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~ 165 (457)
..|+++|++++|+.. ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++ |+|.+ +.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 469999999999742 2579999999999999999999999999999999999999999 89974 35
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHH
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsL 233 (457)
+|+||+|++.+++. ||+||+.|+.. .++++. .++++..+| +. ......+|||||||||+|
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~---~d~e~y----~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSP---FDPERY----ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCc---ccHHHH----HHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 79999999999875 99999987643 233333 333333322 21 234566799999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+..+|+|+|||||||+||+...+++.+. +.... +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999988765 65443 58999999999999889999999999999999999998754
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=274.78 Aligned_cols=199 Identities=23% Similarity=0.336 Sum_probs=175.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchhhhcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
++.++||+.+.++ .-.|-|+||+|.+|||+.|+||+|||||||+.-+.|.+.+ -+|+++++++++.... ..++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQR 77 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhh
Confidence 6789999988887 8899999999999999999999999999999999999876 4799999999886543 3468
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHh--hhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFF--GMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~--~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
++|++||++-||+.++|.+||.|. +.++| ...+..+..+++..+|.. .++.|.+||||||-||++-|+|+..|+
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 899999999999999999999764 23443 234555777899999965 689999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
.++||||+|.||...|.++.+. ..+.+.-|.-.+++|||.+.+....||+-|
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999 777788899999999999998876777655
No 360
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-35 Score=352.32 Aligned_cols=190 Identities=28% Similarity=0.419 Sum_probs=159.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++|||+||++.+++ .||+
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCC-CcHH
Confidence 679999999999999999999999999999999999999999999862 46999999999874 6999
Q ss_pred HHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858 184 ETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp 255 (457)
||+.++... ..+...+ .+++.++.+ |+. ..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 739 enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 739 GNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999875321 1111111 122334444 443 24778999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 256 LVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 256 ~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
..++.+++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 816 ~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 816 HVGERVVEECFLGA-LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999998875 4333 358999999999999988999999999999999999998753
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.1e-35 Score=285.09 Aligned_cols=192 Identities=21% Similarity=0.297 Sum_probs=139.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCceEEEEcC-------c---cCCCCc-hhhhcCcEEEEc
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL-KAIVGLKNISQGEIWVLG-------G---HPASIY-HKTAGSKVGYMP 171 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL-k~L~Gll~p~sG~I~i~G-------~---~~~~~~-~~~~r~~IGyvp 171 (457)
..+|++|||+|++||++||+|+||||||||+ ..|.+ +|++.+.+ . ...... ........++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 6799999999999999999999999999995 44432 34332210 0 000000 011112344555
Q ss_pred CCCC--CCCCCCHH---HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--c
Q psy10858 172 QELA--MFGELTIK---ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--Q 242 (457)
Q Consensus 172 Q~~~--L~~~lTV~---EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~ 242 (457)
|++. +.+..+|. +...++..++ ......++ .++++.+++.. .++++.+|||||||||+||+||+.+| +
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ 159 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV 159 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 5442 33444544 3333322222 12222333 46788899953 68999999999999999999999998 5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEec
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQD 303 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~g 303 (457)
+|||||||+|||+..++.++++++.++++|.|||++||+++++..|||+++| ++|+|+++|
T Consensus 160 llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 160 LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9999999999999999999999887777799999999999998779999999 999999876
No 362
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-36 Score=278.01 Aligned_cols=192 Identities=25% Similarity=0.312 Sum_probs=168.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++|++.+.+. .+++.++||++.+||++-|.|||||||||||++|+|+.+|++|+|++.|..+.... +...+.+
T Consensus 1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l 77 (209)
T COG4133 1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQAL 77 (209)
T ss_pred CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHH
Confidence 36788999999988 89999999999999999999999999999999999999999999999998775432 2234667
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
-|+--.+.+-.+|||+|||.|+..+++-. ....+.++++.++|.. .|.++.+||-||||||+|||-.+..+++.||
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 78888889999999999999999888741 1234677888999965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
||||++||...+..+-.++..-..+|-.||++||..--+
T Consensus 155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 999999999999999999777677888999999986544
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-35 Score=267.45 Aligned_cols=209 Identities=21% Similarity=0.239 Sum_probs=181.6
Q ss_pred CceEEEeeEEEeC-----CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc--CC--CC
Q psy10858 88 EADEGKNTEKEEL-----KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PA--SI 158 (457)
Q Consensus 88 ~~Iei~nlsk~yg-----~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~--~~--~~ 158 (457)
..+.++|++|+|- +-.-.+|+|+||+|+.|||++|=||||+||||+||+|-|-+.|++|+|++.-.. +. ..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 4688999999983 223579999999999999999999999999999999999999999999985432 11 11
Q ss_pred -ch---hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHH
Q psy10858 159 -YH---KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 159 -~~---~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRls 232 (457)
.. ...++.||||.|.....|..+..|.++-...-.|++.+....++..++.+++++. .+-.|.++||||||||.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 11 2345679999999988999998888888877889999999999999999999975 47889999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK 296 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~ 296 (457)
|||+++.+-+||+|||||++||...|+.+.++|...+..|.++|=+-||-+.-+. |||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999988889999999999655455 899988753
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-35 Score=296.60 Aligned_cols=219 Identities=22% Similarity=0.334 Sum_probs=184.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..+...++++.|... +++|+++||+++.|+.++++|++|+||||++++|..++.+++|.|.++|+++.......+|+-|
T Consensus 261 g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 261 GAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred ceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 358899999999753 7899999999999999999999999999999999999999999999999998776666788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--HHhHc-CCCC-CCC----CCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVL-KLPN-LER----PVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--ll~~l-~L~~-~~~----~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|.+||+..||.+ |+..|+.|...- .+.++..+.++. +-..+ .+|. .+. +.-.|||||||||+|||+++.
T Consensus 340 g~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 340 GIVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred CcCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 999999999976 999999875321 223332222221 11111 2333 333 444699999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|+||+|||.||+||....+.+...++... .|+|-+++.|.+..+-.||.|++|++|+|++.|+.++++.+
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999988864 68999999999999999999999999999999999999876
No 365
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-33 Score=279.63 Aligned_cols=196 Identities=23% Similarity=0.324 Sum_probs=157.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--------cC--CCCCce-----------EEEEcCccCCCCchhh
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV--------GL--KNISQG-----------EIWVLGGHPASIYHKT 162 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~--------Gl--l~p~sG-----------~I~i~G~~~~~~~~~~ 162 (457)
...|+|||++|+.|.+++|.|+||||||||++.+. +. ..|..+ -|.++..++....+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34599999999999999999999999999999662 11 012111 3566665554321100
Q ss_pred ----------hc----------------CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-
Q psy10858 163 ----------AG----------------SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN- 215 (457)
Q Consensus 163 ----------~r----------------~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~- 215 (457)
.| ..+.|..++...+.+|||.|++.|+..+.+ ..+..++++.++|..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l 161 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchh
Confidence 00 125677777777789999999999876542 234567889999964
Q ss_pred -CCCCCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 216 -LERPVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 216 -~~~~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
+++++.+||||||||++||+||+.+ |+++||||||+|||+..++.++++++.++++|.|||++||++++++.||++
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 6899999999999999999999996 799999999999999999999999888877899999999999999889999
Q ss_pred EEE------eCCeEEEecCh
Q psy10858 292 AFL------YKGRIIAQDSP 305 (457)
Q Consensus 292 ~im------~~GkI~~~gs~ 305 (457)
+.| ++|+|++.|+|
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEecCCcCCCCCEEEEeCCC
Confidence 999 89999999975
No 366
>KOG0054|consensus
Probab=100.00 E-value=8.8e-34 Score=325.48 Aligned_cols=218 Identities=24% Similarity=0.329 Sum_probs=187.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
-.|+++|++.+|..+-..||+||||+|++||-+||+|..|||||||+++|..+..|.+|+|.|||.++.+.....+|+++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 36999999999987556899999999999999999999999999999999999999999999999999988878899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHcCCCC-CC----CCCCCCChhHHHHHHHHHHh
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVLKLPN-LE----RPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l~L~~-~~----~~~~~LSGGqkQRlsLA~AL 237 (457)
+.+||+|.||.. |+|.||.=+.. .+++++.+..++ ..+ .++. +| .-..++|-||||-|+|||||
T Consensus 1217 sIIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSG-TVRFNLDPFDE---YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred eeeCCCCceecC-ccccccCcccc---cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 999999999976 99999963322 234444433322 111 1221 33 34567999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
+++.+||+|||.|+++|+.+-..|-+.|+..- .++|||.+-|.++.+..||||+||++|+|++.|+|++|+++.
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 99999999999999999999998888887643 479999999999999999999999999999999999999764
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=4.2e-34 Score=252.34 Aligned_cols=132 Identities=34% Similarity=0.556 Sum_probs=116.2
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
|+||||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++.+||.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999988765555667899999999999999999999
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
....++.++++.+++.. .++.+.+||+||||||+||+||+++|++|||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22344666777777633 345559999999999999999999999999999996
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=294.84 Aligned_cols=200 Identities=25% Similarity=0.300 Sum_probs=170.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+++++|+++.|++. +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+ |.. -+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~-g~~----------v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GET----------VK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEe-CCc----------eE
Confidence 5689999999999763 68999999999999999999999999999999999999999999987 321 36
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+||..|+. .+.++.|+.|++.-... + .....+..++..|++.. ..++++.||||||.||.||+.++.+|.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~--~----~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP--D----GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc--c----ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence 99999998 44577899998864321 1 11455778899999953 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe-cChhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ-DSPDGF 308 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~-gs~~~l 308 (457)
|||||||+.||..++..+-+.+... .-|||+||||-..++. |++++.+.+ ++... |..++.
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999887664 4599999999999986 899999988 55444 555443
No 369
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-32 Score=289.11 Aligned_cols=216 Identities=21% Similarity=0.388 Sum_probs=186.8
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhc
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG 164 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r 164 (457)
.++.+++++++..- .++|+||++.+|||+||-|-=|||+|-|+++|.|..++++|+|.++|+++...+ ....+
T Consensus 260 ~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 260 GEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred CCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 35678888887542 378999999999999999999999999999999999999999999999876544 33567
Q ss_pred CcEEEEcCCC---CCCCCCCHHHHHHHhhh--hc---CCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHH
Q psy10858 165 SKVGYMPQEL---AMFGELTIKETLNFFGM--IY---GMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 165 ~~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l~---g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA 234 (457)
..|+|||.+. .++..++|.+|+.+... .. -++....++.++++.+.+++. ..+.++.+||||+||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 7899999875 68999999999987621 11 145555666788888899884 46889999999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~ 307 (457)
|.|..+|++|||||||.|+|..++.+|+++++.+.++|++||++|-+++|+. .||||++|++|+++.+-+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999996 599999999999998766554
No 370
>KOG0054|consensus
Probab=100.00 E-value=4.1e-32 Score=311.76 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=175.3
Q ss_pred cccCceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh
Q psy10858 85 EEEEADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~ 163 (457)
..+.+++++|.+++.+.. ....|+||||+|++|+.+|++|+-|||||+||.+|.|.++..+|++.++|.
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------- 583 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------
Confidence 345689999999998752 245899999999999999999999999999999999999999999999772
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHH
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRL 231 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRl 231 (457)
++||||.+.+++. ||+||+.|+..+ +++ +.++.++...| +. ...+.-+||||||||+
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~---d~~----rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRI 652 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY---DEE----RYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRI 652 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc---cHH----HHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHH
Confidence 8999999999865 999999875432 232 33333333333 21 2467889999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+||||+-++.+|++||-|+|++|....+++++- +... -+++|+|++||.++....||.|++|++|+|.+.|+.+++.+
T Consensus 653 sLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 653 SLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999999999999999999998 7544 45899999999999999999999999999999999999985
Q ss_pred c
Q psy10858 311 K 311 (457)
Q Consensus 311 ~ 311 (457)
.
T Consensus 732 ~ 732 (1381)
T KOG0054|consen 732 S 732 (1381)
T ss_pred c
Confidence 4
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=5.5e-33 Score=263.36 Aligned_cols=164 Identities=14% Similarity=0.160 Sum_probs=132.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------eEEEEcCccCCCCchhhhcCcEEEEcCCCCCCC
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---------GEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---------G~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~ 178 (457)
+++++++++| +++|+||||||||||+++|+|++++.. |++.+.|.+... ...+++|||+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5799999999 999999999999999999999987653 357666665432 12346899999999776
Q ss_pred CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCC
Q psy10858 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVD 254 (457)
Q Consensus 179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLD 254 (457)
| +... .+++.++++. ....++++.+||||||||++||+||+ .+|+++||||||+|||
T Consensus 89 ---------~-----~~~~---~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 ---------Y-----SIIS---QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ---------e-----eEEe---hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 1 1100 2345555555 22367889999999999999999997 4679999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
+..+..++++++.+.+ +.|||++||++++++.||+++.|..
T Consensus 150 ~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 150 DANVERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999888754 7899999999999878999998874
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.98 E-value=2.3e-32 Score=264.45 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=139.4
Q ss_pred EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------cCCCCCce--------EEEEcC
Q psy10858 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------------GLKNISQG--------EIWVLG 152 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------------Gll~p~sG--------~I~i~G 152 (457)
|+|++ ..++++++ |++++|+|||||||||||++|+ +++.+++| +|.+++
T Consensus 10 ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~ 82 (243)
T cd03272 10 KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDN 82 (243)
T ss_pred cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEc
Confidence 45776 77888887 8999999999999999999998 45556666 666655
Q ss_pred ccCC---CCchhhhcCcEEEEcCCCCCCCC-CCHHHHHHHhhhhcCCCHHHHH--HHHHHHHhHcCCC-CCCCCCCCCCh
Q psy10858 153 GHPA---SIYHKTAGSKVGYMPQELAMFGE-LTIKETLNFFGMIYGMDESIWL--FQMRKYSHVLKLP-NLERPVKYLSG 225 (457)
Q Consensus 153 ~~~~---~~~~~~~r~~IGyvpQ~~~L~~~-lTV~EnL~~~~~l~g~~~~~~~--~~~~~ll~~l~L~-~~~~~~~~LSG 225 (457)
.+.. .......++.+||++|+..+++. +|..|...+... .++...... ....++.+.+++. ..++++.+|||
T Consensus 83 ~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~ 161 (243)
T cd03272 83 SDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSG 161 (243)
T ss_pred CCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccccccccCH
Confidence 3211 11112345679999999988874 677666555443 355432100 0011223334443 35788999999
Q ss_pred hHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858 226 GQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295 (457)
Q Consensus 226 GqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~ 295 (457)
|||||++||+||+. +|+++||||||+||||.+++.+++.++.+.+ +.+||++||+.+....||++++|.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEE
Confidence 99999999999973 5899999999999999999999999877654 889999999866555699999885
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.9e-33 Score=267.33 Aligned_cols=184 Identities=18% Similarity=0.199 Sum_probs=144.8
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
|+++|.. +|++ ..+++++++ +++||+||||||||||+++|. +++|.+.. ...++++||
T Consensus 6 l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~~~i~~ 63 (212)
T cd03274 6 LVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQKKLSD 63 (212)
T ss_pred EEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----HhhhhhHHH
Confidence 6677766 7887 889999998 899999999999999999997 34454431 112357999
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhc--------CCCHHHHHH--HHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIY--------GMDESIWLF--QMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~--------g~~~~~~~~--~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
++|+..+++.+|+.+++.++...+ |...+.... ...++++.++++. .++++..||+|||||++||+|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 999999999999999888776543 332211110 0144556777754 67889999999999999999997
Q ss_pred c----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 239 H----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 239 ~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
. .|++++|||||+||||.+++.+++.++.+. ++.|+|++||+.+..+.|||+++|..
T Consensus 144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 4 479999999999999999999999988764 56789999999655567999999964
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.2e-32 Score=254.40 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=186.3
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
++.++++...- -|-.+|..+..||++-++||||||||||+-.++|+++ -+|+|.+.|.++......+..+.-+
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 56677766543 2667999999999999999999999999999999985 5899999999987655445566778
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc-----CC-
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH-----KP- 241 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~-----~P- 241 (457)
|+.|+..-...|.|+++|.++ .+.+.....+.++...+++.+ +.+.+++|||||-|||-+|...++ ||
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred HHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 999987766678999988764 345666777888888999954 789999999999999999998875 33
Q ss_pred -ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH-hccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 242 -QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 242 -~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea-~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
++||||||.++||...+..+-.++..++..|.+|||++||++-. +.+|++++++.|++++.|..+++++. +.+..
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~---~vL~q 227 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP---PVLAQ 227 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh---HHHHH
Confidence 79999999999999988888888988899999999999999986 56999999999999999999998864 56777
Q ss_pred HHH
Q psy10858 320 VFY 322 (457)
Q Consensus 320 ~f~ 322 (457)
+|.
T Consensus 228 ~fg 230 (248)
T COG4138 228 AYG 230 (248)
T ss_pred Hhc
Confidence 775
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=2.5e-31 Score=253.98 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=139.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVK-RREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~-~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.|+++|.. +|.+ . ++|+|+.. +|++++|+|||||||||||++|++.+ .+..+..... ..............
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 57888888 6655 2 56677654 59999999999999999999999643 4444444332 11111111223457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------ 239 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------ 239 (457)
|++++|+.... .++.. ..+++.+...+.+ .+...++.. .++++.+||||||||++||+||+.
T Consensus 78 v~~~f~~~~~~--~~~~r-------~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~ 146 (213)
T cd03279 78 VSFTFQLGGKK--YRVER-------SRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQN 146 (213)
T ss_pred EEEEEEECCeE--EEEEE-------ecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhh
Confidence 99999987321 12211 1255554333222 133333432 588999999999999999999985
Q ss_pred ----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 240 ----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 240 ----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
+|+++||||||+|||+..++.++++++.++++|.|||++||+++++.. ||++++|++|.+
T Consensus 147 ~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 147 RGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 678999999999999999999999988877679999999999999876 899999998853
No 376
>KOG0065|consensus
Probab=99.97 E-value=7.7e-31 Score=296.18 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=185.3
Q ss_pred CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 103 ~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
++.+|+||+=-+++|..+||+|+|||||||||++|+|... ..+|+|+++|.+..+ +..+|.+|||-|++.-.+++
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4889999999999999999999999999999999999864 467999999987653 34678999999999777999
Q ss_pred CHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCCC----CChhHHHHHHHHHHhhcCC-ceEEEeCCCC
Q psy10858 181 TIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVKY----LSGGQKRRLSFTIAILHKP-QLIILDEPCV 251 (457)
Q Consensus 181 TV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~----LSGGqkQRlsLA~ALl~~P-~lLILDEPTs 251 (457)
||+|-|.|.|.++ ..+.++..+.++++++.++|+. .|..++. ||.+||+||.||.-|+.+| .||+||||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 9999999999886 3556666688999999999975 5666666 9999999999999999999 9999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH-H-hccCeEEEEe-CCeEEEecChhhhhhcCCcccHHHHHHhh
Q psy10858 252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE-A-NDASEVAFLY-KGRIIAQDSPDGFKSKYSMPKLSDVFYKI 324 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e-a-~~~dri~im~-~GkI~~~gs~~~l~~~~~~~~l~~~f~~~ 324 (457)
|||..+...++++++.+.+.|.||+.|-|...- + ++.||+++|+ .|+.+..|++.+- ...+-+.|...
T Consensus 960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~-----s~~li~YFes~ 1030 (1391)
T KOG0065|consen 960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN-----SSKLIEYFESI 1030 (1391)
T ss_pred CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc-----cHHHHHHHHhc
Confidence 999999999999999999999999999999874 3 5689999997 6899999998652 23455555543
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=4.4e-31 Score=258.10 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=146.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCc-cCCCCc--hhhhcC
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGG-HPASIY--HKTAGS 165 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~-~~~~~~--~~~~r~ 165 (457)
+.++|. ++|.. ..++.++ . ..+++|+||||||||||+++|+|++.++ .|++.+.|. ++.... ....+.
T Consensus 6 ~~~~~f-~~~~~--~~~~~~~----~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~ 77 (251)
T cd03273 6 IILDGF-KSYAT--RTVISGF----D-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKA 77 (251)
T ss_pred EEEeCc-cccCc--CEeeccC----C-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEE
Confidence 455555 55654 3332222 2 5699999999999999999999999886 468887765 322111 112245
Q ss_pred cEEEEcCCC---------CCCCCCCHHHHHHHhhhhcC-C-CHHHHHHHHHHHHhHcCCC--------------------
Q psy10858 166 KVGYMPQEL---------AMFGELTIKETLNFFGMIYG-M-DESIWLFQMRKYSHVLKLP-------------------- 214 (457)
Q Consensus 166 ~IGyvpQ~~---------~L~~~lTV~EnL~~~~~l~g-~-~~~~~~~~~~~ll~~l~L~-------------------- 214 (457)
+|++++|++ .+.+.+||.+++........ + .+....+++.++++.+++.
T Consensus 78 ~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 78 SVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 899999985 45667899888865432211 1 1223446777888888884
Q ss_pred C-CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858 215 N-LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289 (457)
Q Consensus 215 ~-~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d 289 (457)
. .++++.+||+|||||++||+||+ .+|+++||||||+|||+..++.+++.++.+. +|.|||++||+.+..+.||
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCC
Confidence 1 35789999999999999999998 5789999999999999999999999987764 5899999999966667799
Q ss_pred eEEEEe
Q psy10858 290 EVAFLY 295 (457)
Q Consensus 290 ri~im~ 295 (457)
+++-+.
T Consensus 237 ~v~~~~ 242 (251)
T cd03273 237 VLFRTR 242 (251)
T ss_pred EEEEEE
Confidence 998775
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=5.4e-30 Score=244.03 Aligned_cols=165 Identities=17% Similarity=0.122 Sum_probs=130.0
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-----CCCCCC
Q psy10858 110 CSLVVKRREFFVLLGASSAGKTTLLKAIV----GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-----AMFGEL 180 (457)
Q Consensus 110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~-----~L~~~l 180 (457)
.++++.+| +++|+||||||||||+++|. |..+|++|.+..+...+.. ...+..|++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 44566677 99999999999999999994 9999988877622222221 12346799999988 344456
Q ss_pred CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHH------HHHHHHhhcCCceEEEeCCCCCCC
Q psy10858 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR------LSFTIAILHKPQLIILDEPCVGVD 254 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQR------lsLA~ALl~~P~lLILDEPTsGLD 254 (457)
|+.+|+.+. +..+ +.+.+ ++.+.+||+||+|| +++|+|++.+|+++||||||++||
T Consensus 92 ~~~~~~~~~------~~~~----~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD 153 (204)
T cd03240 92 AILENVIFC------HQGE----SNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 (204)
T ss_pred hHhhceeee------chHH----HHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence 888888542 1111 22222 67889999999996 789999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 255 PLVRK-RMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 255 p~~r~-~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
+..++ .+++++..++++ |.|||++||+++.+..||+++.|.+
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 154 EENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999 999998777665 8999999999998878999998864
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=3.8e-29 Score=282.53 Aligned_cols=212 Identities=23% Similarity=0.333 Sum_probs=161.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---------cCCCCCce------------
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV---------GLKNISQG------------ 146 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~---------Gll~p~sG------------ 146 (457)
..|+++|++. ..|+|+||+|++||++||.|+||||||||++.+. +...+..+
T Consensus 613 ~~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 613 KFLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred ceEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 4688888862 2499999999999999999999999999999763 21111111
Q ss_pred EEEEcCccCCCCc--------------hhhh-----cCcEEEEcCCCCCCC-----------------------------
Q psy10858 147 EIWVLGGHPASIY--------------HKTA-----GSKVGYMPQELAMFG----------------------------- 178 (457)
Q Consensus 147 ~I~i~G~~~~~~~--------------~~~~-----r~~IGyvpQ~~~L~~----------------------------- 178 (457)
.|.|+-.++.... +... .+..||.++.+++..
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 765 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCD 765 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCc
Confidence 1222222211000 0000 123455555544433
Q ss_pred -------------------------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858 179 -------------------------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL 231 (457)
Q Consensus 179 -------------------------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl 231 (457)
+|||.|++.|+..+.++ .+..++++.++|.. +++++.+||||||||+
T Consensus 766 ~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl 839 (943)
T PRK00349 766 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRV 839 (943)
T ss_pred cccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHH
Confidence 37899999887665432 12356788899964 6899999999999999
Q ss_pred HHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEe
Q psy10858 232 SFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQ 302 (457)
Q Consensus 232 sLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~ 302 (457)
.||+||+.+| +++||||||+|||+..++.++++++.++++|.|||++||+++++..||+|+.| ++|+|++.
T Consensus 840 ~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 840 KLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9999999999 99999999999999999999999888877899999999999999889999999 79999999
Q ss_pred cChhhhhhcC
Q psy10858 303 DSPDGFKSKY 312 (457)
Q Consensus 303 gs~~~l~~~~ 312 (457)
|+++++....
T Consensus 920 Gt~~el~~~~ 929 (943)
T PRK00349 920 GTPEEVAKVE 929 (943)
T ss_pred CCHHHHHhCc
Confidence 9999997653
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=9e-29 Score=257.47 Aligned_cols=221 Identities=20% Similarity=0.366 Sum_probs=193.6
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC-CCCc-hhhh
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIY-HKTA 163 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~-~~~~-~~~~ 163 (457)
.++.+++++|+..-..+ ..++++|||+|.+|||+||.|-.|-|-+.|+..|+|+.++.+|+|.++|+++ .... ....
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 46789999999987653 5789999999999999999999999999999999999999899999999987 3322 2344
Q ss_pred cCcEEEEcCCC---CCCCCCCHHHHHHHhhhh------cC-CCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHH
Q psy10858 164 GSKVGYMPQEL---AMFGELTIKETLNFFGMI------YG-MDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRL 231 (457)
Q Consensus 164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~~l------~g-~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRl 231 (457)
+..+||+|.+. .+.+++|+.||+.+...- ++ +....+.+...++.+.++.. ..+.++.+||||++||+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 57899999986 588899999999764321 12 45677888889999999984 36778999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
-+||-|..+|++||+.+||.|||..+.+.+.+.+...++.|++|+++|-|++|+.. ||||++|.+|+++...++++
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999999999987888999999999999999965 99999999999998888765
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.5e-30 Score=258.68 Aligned_cols=202 Identities=22% Similarity=0.294 Sum_probs=171.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.-||++|+.+.|... ..-|..||++|++||++-|+|.|||||||++++|+|+.+|++|+|+++|+++.....+..|+-+
T Consensus 321 ~~lelrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 321 KTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred cceeeeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 369999999999873 2568999999999999999999999999999999999999999999999999877777778778
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC----CCC--CCCCCChhHHHHHHHHHHhhcCC
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN----LER--PVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~----~~~--~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+-+|.|..||+.+-..|+ +...+.++.+++++.+.+ .|. ..-.||.|||+|+++-.|++-+-
T Consensus 400 SavFsDyhLF~~ll~~e~------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 400 SAVFSDYHLFDQLLGPEG------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred HHHhhhHhhhHhhhCCcc------------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 888888888775422221 112334556666666632 233 34579999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~ 302 (457)
+|+++||=-+--||.-|+.+++. +-.++++|+|||.+|||-..-..|||++.|.+|++++.
T Consensus 468 ~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 468 DILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999998 77888899999999999877788999999999999765
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=7e-28 Score=283.18 Aligned_cols=215 Identities=22% Similarity=0.274 Sum_probs=162.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHcCCCCCce----E----EEEc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK---------AIVGLKNISQG----E----IWVL 151 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk---------~L~Gll~p~sG----~----I~i~ 151 (457)
.+++++++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+..+ . |.|+
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 578888762 2599999999999999999999999999999 66665433111 1 2222
Q ss_pred CccCCCCch----h------h-------------------------------hcCcEEE----EcCCC------------
Q psy10858 152 GGHPASIYH----K------T-------------------------------AGSKVGY----MPQEL------------ 174 (457)
Q Consensus 152 G~~~~~~~~----~------~-------------------------------~r~~IGy----vpQ~~------------ 174 (457)
-.++..... . . ..+.+|+ |+...
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 222211000 0 0 0111222 22111
Q ss_pred -----CCCCCCCHHHHHHHhhh---hcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh---cCC
Q psy10858 175 -----AMFGELTIKETLNFFGM---IYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL---HKP 241 (457)
Q Consensus 175 -----~L~~~lTV~EnL~~~~~---l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl---~~P 241 (457)
..|..+||.|+|.+... .+..+.++..+++ ++++.++|.. +++++.+|||||||||+||+||+ .+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence 25677899999987644 2233444556666 4788899964 58999999999999999999997 699
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe------CCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY------KGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~------~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+..++.++++++.++++|.|||++||+++++..||++++|. +|++++.|+++++...
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence 999999999999999999999998888888999999999999996699999996 8999999999998763
No 383
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=5.3e-27 Score=264.77 Aligned_cols=124 Identities=26% Similarity=0.424 Sum_probs=107.3
Q ss_pred CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhc---CCceEEEeCCCCCC
Q psy10858 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILH---KPQLIILDEPCVGV 253 (457)
Q Consensus 179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~---~P~lLILDEPTsGL 253 (457)
+|||.|.+.|+..+.++. +..++++.++|.. +++++.+|||||+|||.||+||+. +|+++||||||+||
T Consensus 789 ~~tv~e~~~f~~~~~~i~------~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL 862 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSIS------RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 862 (924)
T ss_pred CCcHHHHHHHHHhccchh------HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence 367777777766543321 2346778899964 689999999999999999999997 59999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhh
Q psy10858 254 DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGF 308 (457)
Q Consensus 254 Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l 308 (457)
|+..++.++++++.++++|.|||++||+++++..||++++| ++|+|++.|+++++
T Consensus 863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999888877899999999999999889999999 79999999999875
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.8e-27 Score=225.87 Aligned_cols=173 Identities=18% Similarity=0.143 Sum_probs=127.1
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCCchhhhcCcEEEEcCCCCCCCCCC
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTAGSKVGYMPQELAMFGELT 181 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~~~~~~r~~IGyvpQ~~~L~~~lT 181 (457)
..++++++++.+| +.+|+||||||||||+.+|...+..+... ...|. +.... ......|.+.+|+..++++
T Consensus 10 r~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~-~~r~~~~~~~i~~--~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 10 MCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASD-TNRGSSLKDLIKD--GESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred cceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccc-ccccccHHHHhhC--CCCeEEEEEEEEcCCccCC--
Confidence 3467888898888 88999999999999999998544332210 11122 11111 1123568899998776651
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHH
Q psy10858 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLV 257 (457)
Q Consensus 182 V~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~ 257 (457)
...++ .+.++.++++. -...++++++||+|||||++||+|| +.+|+++||||||+|||+..
T Consensus 84 ---------~~~~~----~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 ---------PLCVL----SQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred ---------cCCHH----HHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 11111 13345555555 2236889999999999999999999 58999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 258 RKRMWDLLQVFVGK---GRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 258 r~~i~~~i~~~~~~---g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
+..+++++....++ +.|||++||+++++..+|||.+|+.++
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999997665432 469999999999998889999998754
No 385
>KOG0927|consensus
Probab=99.94 E-value=1.2e-27 Score=250.52 Aligned_cols=201 Identities=20% Similarity=0.215 Sum_probs=162.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+.+.++|+++.|.++ -.++++++|.|..++.+++|||||||||||||+++|.+.|+.|.|.-.- ..+
T Consensus 387 ~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~ 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNK 454 (614)
T ss_pred CCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------ccc
Confidence 5789999999999873 3789999999999999999999999999999999999999999886421 123
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 167 VGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 167 IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+++.-|+. .+.-+.++.|++. ..+. .....+.+..++.++||. . .+.++++||+|||+||.+|++++..|.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~---~~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMM---PKFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHH---Hhcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 55556654 3444556766653 2222 123345677889999996 3 578999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDG 307 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~ 307 (457)
+|+|||||+|||......+-+.|... .-+||++|||+..+.+ +++|++..+|.+. ..|+...
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 99999999999999999988888664 4579999999999976 8999999988874 4455443
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=4.8e-27 Score=229.45 Aligned_cols=194 Identities=16% Similarity=0.083 Sum_probs=128.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-CCCCc------hhh
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-PASIY------HKT 162 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-~~~~~------~~~ 162 (457)
|+++|. ++|.+ ... |...++ +++|+||||||||||+.+|.+++.++.|++...+.. ..... ...
T Consensus 4 i~l~nf-~~~~~--~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 4 LELENF-KSYKG--RHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEECc-cccCC--Cee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 567775 66654 222 333344 999999999999999999999998888877654321 11100 011
Q ss_pred hcCcEEEEcCCCCC-CCCCCHHHHH-HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----------------------CC
Q psy10858 163 AGSKVGYMPQELAM-FGELTIKETL-NFFGMIYGMDESIWLFQMRKYSHVLKLPN-----------------------LE 217 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L-~~~lTV~EnL-~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----------------------~~ 217 (457)
..-.+.|..|+... ....++.+.. .++..-...+ .+.++++++.+++.. .+
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~ 150 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRF 150 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhh
Confidence 22234454454321 1111111111 1111111122 223445666666631 12
Q ss_pred CCCCCCChhHHHHHHHHHHhhcC----CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858 218 RPVKYLSGGQKRRLSFTIAILHK----PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsLA~ALl~~----P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i 293 (457)
+++.+||+|||||++||+|++.+ |+++||||||+|||+..+..+.+.+..+.++|.|||++||+.+.+..|||+++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence 34589999999999999999865 89999999999999999999999988877679999999999887778999988
Q ss_pred EeC
Q psy10858 294 LYK 296 (457)
Q Consensus 294 m~~ 296 (457)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 863
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=2e-26 Score=218.46 Aligned_cols=234 Identities=17% Similarity=0.216 Sum_probs=180.0
Q ss_pred CceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchh
Q psy10858 88 EADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 88 ~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~ 161 (457)
+.+.++|++..+.. +...||++||+++.+|||-||+|.+|||||-..|.|+|..+- +.-+..+++.++-...+.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 35678888887742 237899999999999999999999999999999999999752 344455555554433332
Q ss_pred h----hcCcEEEEcCCCC--CCCCCCHHHHHHH--hhh-hcCCCH---HHHHHHHHHHHhHcCCCC----CCCCCCCCCh
Q psy10858 162 T----AGSKVGYMPQELA--MFGELTIKETLNF--FGM-IYGMDE---SIWLFQMRKYSHVLKLPN----LERPVKYLSG 225 (457)
Q Consensus 162 ~----~r~~IGyvpQ~~~--L~~~lTV~EnL~~--~~~-l~g~~~---~~~~~~~~~ll~~l~L~~----~~~~~~~LSG 225 (457)
. ..+.|+++||+|. |.+.-+|-..|.- ..+ +.|.-. ...+.++-+++..+|+.+ ...++.+|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 2 3456889999995 5554444333311 111 111111 123455678889999953 3579999999
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD 303 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g 303 (457)
|+-|||+||.|++.+|++||.||||+.+||..+.+++.++..+. .+|+||++++||+..+.. ||++-+|.-|+-++++
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa 241 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESA 241 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccccc
Confidence 99999999999999999999999999999999999999976654 458999999999999865 9999999999999999
Q ss_pred ChhhhhhcCCcccHHHHH
Q psy10858 304 SPDGFKSKYSMPKLSDVF 321 (457)
Q Consensus 304 s~~~l~~~~~~~~l~~~f 321 (457)
..+++.+....++...+.
T Consensus 242 ~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 242 PSEELVTMPHHPYTQALI 259 (330)
T ss_pred chhHHhcCCCCchHHHHH
Confidence 999999887666555443
No 388
>KOG0927|consensus
Probab=99.94 E-value=2.1e-26 Score=241.38 Aligned_cols=219 Identities=20% Similarity=0.276 Sum_probs=155.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE--cCccCCCCchhhh-
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--LGGHPASIYHKTA- 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i--~G~~~~~~~~~~~- 163 (457)
...+.+.|+++.|-+ +.+++|+.|++.+|+-+||+|+|||||||+|++|+|-..|..=.+-+ ..+..........
T Consensus 73 s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred cccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 346999999999988 99999999999999999999999999999999999999886544422 2222211110000
Q ss_pred ---------cCcEEEEcCCCCCC-CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHH
Q psy10858 164 ---------GSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRL 231 (457)
Q Consensus 164 ---------r~~IGyvpQ~~~L~-~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRl 231 (457)
+.++.|.-.+.... ++..-.+....+-++-.++.+....++.+++..++.. . .++.+.+||||+|.|+
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 01111111111000 0000000111112222344455666677777777763 3 6899999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe-EEEecChhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR-IIAQDSPDGFK 309 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk-I~~~gs~~~l~ 309 (457)
+|||||..+|++|+|||||++||+.+...+-+.+... +.+ ++++++|+-+.+.. |++|+-|++++ +.+.|+-+...
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999999999999999999999999999998887654 222 89999999999976 99999999999 56677766554
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=7.4e-26 Score=233.38 Aligned_cols=187 Identities=24% Similarity=0.291 Sum_probs=151.8
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
...++-.+++|.||+ + .|+-=.=+|..||++|++||||-||||+.|+|+|.++|++|. .. .-+
T Consensus 340 ~~lv~y~~~~k~~g~--F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~----------~~~ 402 (591)
T COG1245 340 DTLVEYPDLKKTYGD--F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE----------DLK 402 (591)
T ss_pred ceeeecchheeecCc--e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc----------cce
Confidence 356777888899987 3 244445577889999999999999999999999999999987 11 136
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
|+|=||-..--.+.||.+.|.-...- ++- .. -..++.+-+.|+. .++++.+|||||.|||+||.||..+++++
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~--s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGS--SY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhccc--ch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE
Confidence 89999987766778999987543221 111 11 1345667777865 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
+||||++.||...|-.+-+.|+... ++++|.+++.||+-.+.. +||+++..
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999977765 458999999999999987 89998774
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=8.5e-25 Score=235.00 Aligned_cols=186 Identities=27% Similarity=0.360 Sum_probs=153.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
...|+++|++..-+.+ .+.|+++||+|++||-+-|.|+||||||||+|+|+|+.|--+|+|..- ....
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----------~~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----------ADSA 457 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----------CCCc
Confidence 4689999999999875 589999999999999999999999999999999999999988888641 1245
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-------CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-------LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-------~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
+-|+||.|.+... |.+|-|.|.......+++ .+.+++..++|++ .++--..||+||||||++||.|++
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~----~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCCCCChH----HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHc
Confidence 8899999998655 999999887554334443 3556677777753 233445799999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
+|++++|||-|++||+.+...++++++.-. .+.|||-|+|.-..-...++
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhh
Confidence 999999999999999999999999976522 58999999999766554444
No 391
>KOG0062|consensus
Probab=99.92 E-value=3.2e-25 Score=231.36 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=146.4
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..-|.+.+.+..||+ +.+|++-++++..|--|||+|+||+|||||||+|+. |.|..+..+- +.+.
T Consensus 78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veq------E~~g- 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQ------EVRG- 142 (582)
T ss_pred ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchh------heec-
Confidence 346888999999998 999999999999999999999999999999999997 5555443221 1110
Q ss_pred EEEEcCC-CCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 167 VGYMPQE-LAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 167 IGyvpQ~-~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
-|++-. ..+..++++.+.+.--..+. +. ...+...++|.-+|+.. ..++.++||||.|-|++|||||..+|+
T Consensus 143 -~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pD 218 (582)
T KOG0062|consen 143 -DDTEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPD 218 (582)
T ss_pred -cchHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCC
Confidence 122211 12333444444332211111 11 11222333777888843 478899999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGF 308 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l 308 (457)
||||||||+.||..+...+-++++.. +.|+|+||||-+++.. |..|+-+++-|+- ..|.-+++
T Consensus 219 lLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 219 LLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred EEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 99999999999999999988887653 5899999999999976 9999988876662 34544443
No 392
>KOG2355|consensus
Probab=99.91 E-value=1.2e-23 Score=199.00 Aligned_cols=213 Identities=22% Similarity=0.353 Sum_probs=164.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.-+|++.++.++|... .+++-|+|++++.|...-|+|.||||||||||+|+|-.-.-.|.|.+.|.+.-....-.-...
T Consensus 11 ~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 4689999999999764 488999999999999999999999999999999999877777999999987543111111122
Q ss_pred EEEEc----------CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH
Q psy10858 167 VGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 167 IGyvp----------Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A 236 (457)
..|+- -+..+-.++++.+.+ |. .-|... +|-+++.+.+++. ..-+.+.+|-||||||.|++.
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mi-fg--V~g~dp----~Rre~LI~iLDId-l~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FG--VGGDDP----ERREKLIDILDID-LRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred eeEecccccccccccccccccccccHHHHH-hh--ccCCCh----hHhhhhhhheecc-ceEEEeeccccchhhhHHHHh
Confidence 33332 133445567776544 21 223322 4455667777764 345678899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l 308 (457)
|++-=++|+|||-|.-||..+|..+.+.++. ..++|.||+..||-.+-++. .++++.|.+|+++-.-.-+.+
T Consensus 162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 9998899999999999999999999999655 44569999999999987765 899999999999874444333
No 393
>KOG0062|consensus
Probab=99.91 E-value=5.8e-24 Score=222.06 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=165.5
Q ss_pred cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
...|.+++.+|++.|..+.-..+.++++.++.-+-.+++|+||+||||++|++.|...|..|.+.+. .|
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r 426 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PR 426 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cc
Confidence 4568999999999997643368999999999999999999999999999999999999999988653 35
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
.+|+|-+|...=+-++.|.+.-.+-...-|..+++ ++..+..||+.. +.+.+.+||||||-||++|.....+|-
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee----~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE----IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHH----HHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 78999999876555556554333333334665444 556688899953 456689999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~ 301 (457)
+|+|||||+.||..+-..+-+.++.. +-.||+||||.+.+.. |+.+++.++|++..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999998888887664 4579999999999976 99999999999965
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=4.7e-24 Score=202.02 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=111.9
Q ss_pred EeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC
Q psy10858 107 LNNCSLVVKRRE-FFVLLGASSAGKTTLLKAIV--------GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177 (457)
Q Consensus 107 L~~vs~~I~~Ge-i~gLlGpNGaGKTTLLk~L~--------Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~ 177 (457)
+-++||++.+|+ +++|.||||||||||+|+|+ |..-|... ...++|+.|....+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------------~~~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------------GSSLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------------cccCcCccEEEEec
Confidence 557999999995 89999999999999999998 43333210 01234444432111
Q ss_pred CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256 (457)
Q Consensus 178 ~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~ 256 (457)
+.. ..++..+++|+||||++.+++++ .+|+++|+||||+|+|+.
T Consensus 80 ----------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~ 124 (200)
T cd03280 80 ----------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPV 124 (200)
T ss_pred ----------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHH
Confidence 110 13455689999999999999885 899999999999999999
Q ss_pred HHHHHHH-HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858 257 VRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303 (457)
Q Consensus 257 ~r~~i~~-~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g 303 (457)
.+..++. +++.+.+.|.|+|++||+.+....||++..|++|++...+
T Consensus 125 ~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 125 EGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999975 5777777799999999996555669999999999998763
No 395
>KOG0066|consensus
Probab=99.90 E-value=1.2e-23 Score=215.92 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=156.1
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
.+|++-+.+|++.|.+. ++.+++++|-|.--..++|+||||.||||||++|.|-+.|+.|+..- ..|-
T Consensus 583 ~PPvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK-----------nhrL 650 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK-----------NHRL 650 (807)
T ss_pred CCCeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc-----------ccee
Confidence 35789999999999542 78999999999999999999999999999999999999999987752 1245
Q ss_pred cEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCC-CCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 166 KVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLE-RPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 166 ~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~-~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+||+.-|+. .|-.+-|..|+| .+.+.++..+. ...+-.+||. +++ -.+..||||||-||++|---+..|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq~A----RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYL---QRKFNLPYQEA----RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred eeechhhhhHHhhccccCHHHHH---HHhcCCChHHH----HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCC
Confidence 799998876 455556766655 46677776543 3456778884 443 468899999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
+||||||||++||..+...+-+.|..+ .-.|||||||-..+.. -..++++.+..|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999888765 3479999999888754 345677766544
No 396
>KOG0060|consensus
Probab=99.89 E-value=3e-22 Score=211.56 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=156.0
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
.+.+|++++|+..-.+++..+++|+||+|++|+-+-|.||||||||+||++|+|+.+-.+|.+.--.+.- -+
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~ 501 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PK 501 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CC
Confidence 3468999999999876557889999999999999999999999999999999999999999997533210 14
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-------CC-----CCCCCCChhHHHHHH
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-------LE-----RPVKYLSGGQKRRLS 232 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-------~~-----~~~~~LSGGqkQRls 232 (457)
.+-|+||.|.+-.. |.+|.+.|...-. ...+....+++.+.++.++|.+ .| .-...||+|||||++
T Consensus 502 ~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence 58999999987554 9999998873221 1111111223444444444421 22 234579999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
+||-+.++|++-||||-||++|......+.+..+ +.|+|.|-|+|.-..-+.-|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999988888764 469999999999887777888888864
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.8e-22 Score=193.84 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=70.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEcCChhHHh-cc
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-G-RTVIMTTQYIEEAN-DA 288 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g-~TIIisTH~~~ea~-~~ 288 (457)
.+..+.+||+|||||+.+|++| +.+|+++|+||||+|||+..+..+++.+....++ | .|+|++||++.+.. .+
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4567899999999998877554 5899999999999999999999999998776655 5 58999999998764 45
Q ss_pred C--eEEEEeCCeE
Q psy10858 289 S--EVAFLYKGRI 299 (457)
Q Consensus 289 d--ri~im~~GkI 299 (457)
| +|++|.+|+-
T Consensus 200 ~~~~v~~l~~g~~ 212 (213)
T cd03277 200 EKMTVLCVYNGPH 212 (213)
T ss_pred CceEEEEEecCcc
Confidence 5 7889998873
No 398
>KOG0065|consensus
Probab=99.88 E-value=1.1e-22 Score=230.64 Aligned_cols=204 Identities=26% Similarity=0.324 Sum_probs=173.7
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
..+|+|+|.-+++|+.+.++||.|||||||+|.|+|-+.- ..|+|.++|.+...... ++.++|++|++..+++|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 5799999999999999999999999999999999998753 35799999988765432 67899999999999999
Q ss_pred CHHHHHHHhhhhcCC-------CHHHHH-HHHHHHHhHcCCCC-C-----CCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 181 TIKETLNFFGMIYGM-------DESIWL-FQMRKYSHVLKLPN-L-----ERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 181 TV~EnL~~~~~l~g~-------~~~~~~-~~~~~ll~~l~L~~-~-----~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+|.|.|.++..+- ++.+.. ...+.+++.+||.+ + |...+-.|||||+||++|-+++.+|+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999999887643 222221 24567899999964 3 456677999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH-H-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEE-A-NDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~e-a-~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||+|.|||..+.-++.+.++.+.+ .+.|++++-|.... + +..|.|.+|.+|+++..|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999777654 48899998888654 4 4589999999999999999998875
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.87 E-value=2.4e-21 Score=181.26 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 223 LSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 223 LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
||+|||||++||+||+ .+|+++|+|||+++||+..++.+++.+..+.++|.|+|++||+++.+..+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6899999999999999999999999987776668999999999988878999998864
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.86 E-value=7.2e-22 Score=187.81 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=109.1
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. . .+++|...+|..+|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-------~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-------S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-------C--ccCcccceEEEeccch
Confidence 56888887775 79999999999999999999988653 1124544321 1 3667777889999999
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW- 262 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~- 262 (457)
||+.+....+ ..+. .++.++++.+++ .+|+++|+||||+|+|+..+..+.
T Consensus 78 d~l~~~~s~~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 78 DDLRDGISYF---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred hccccccChH---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence 9997643221 2222 456666665542 799999999999999999998764
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHhc---cCeEEEEe
Q psy10858 263 DLLQVFVGKGRTVIMTTQYIEEAND---ASEVAFLY 295 (457)
Q Consensus 263 ~~i~~~~~~g~TIIisTH~~~ea~~---~dri~im~ 295 (457)
.+++.+.+.|.|+|++||+++++.. .++|..++
T Consensus 129 ~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 129 AVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 4677766779999999999998854 35565554
No 401
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=1e-21 Score=189.90 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=115.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE-EEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-YMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV 182 (457)
..+.+|+++++.+|++++|.||||+||||++++++=. ....++| |+|.+...++ +
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~---~ 72 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP---I 72 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe---c
Confidence 6789999999999999999999999999999999810 1122455 6666543222 1
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCCceEEEeCC---CCCCCHHH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKPQLIILDEP---CVGVDPLV 257 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P~lLILDEP---TsGLDp~~ 257 (457)
+++++..+++. +...+.+|.|++|++.+++++ +.+|+++||||| |+++|+.+
T Consensus 73 ---------------------~~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~ 129 (222)
T cd03285 73 ---------------------VDCILARVGAS--DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG 129 (222)
T ss_pred ---------------------cceeEeeeccc--cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence 12233445543 334678999999999999999 899999999999 99999998
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858 258 RKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 258 r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs 304 (457)
.. |.+++.+.+ .|.++|++||+.+..+.||++..+++|++...++
T Consensus 130 ~~--~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 130 LA--WAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HH--HHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 85 444454443 4899999999744445699999999999987664
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=3.9e-21 Score=176.45 Aligned_cols=139 Identities=24% Similarity=0.259 Sum_probs=103.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE-EcCCCCCCCCCCHHHHH
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY-MPQELAMFGELTIKETL 186 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy-vpQ~~~L~~~lTV~EnL 186 (457)
...++.+.++.+..|+|||||||||+++.+....-..+|.+.. +... +.|+ +++....+ +
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~~~~--------i 72 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVSAEL--------I 72 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeEEEE--------e
Confidence 4455666667799999999999999999988776666555443 1111 1111 12111111 0
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHH
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
+ ...+||+||+||+++|++|+. +|+++|||||++|+|+..+..+.
T Consensus 73 ------~-------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~ 121 (162)
T cd03227 73 ------F-------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA 121 (162)
T ss_pred ------h-------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 001299999999999999987 78999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 263 DLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 263 ~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
+.+....++|.++|++||+.+.+..+|+++.|..
T Consensus 122 ~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 122 EAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9965554448999999999999988999999864
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.6e-21 Score=192.28 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=69.6
Q ss_pred CCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 219 PVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
...+|||||+||+++|++++. +|+++||||||++||+..+..+++.+.... ++.|+|++||++..+..||++++|
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHHHhcCcEEEE
Confidence 344599999999999997654 999999999999999999999999987764 478999999999877779999999
Q ss_pred eCCe
Q psy10858 295 YKGR 298 (457)
Q Consensus 295 ~~Gk 298 (457)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
No 404
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=201.89 Aligned_cols=186 Identities=21% Similarity=0.229 Sum_probs=135.6
Q ss_pred eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC--------
Q psy10858 94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS-------- 165 (457)
Q Consensus 94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~-------- 165 (457)
+++.+||.+.+ .|.++- ...+|+++||+|+||-||||.+|+|+|.+.|.=|+-. + ++. .+ +..++
T Consensus 79 e~vHRYg~NgF-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp~-wd-eVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNGF-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PPS-WD-EVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCce-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CCC-HH-HHHHHhhhhHHHH
Confidence 45788986433 233322 3568999999999999999999999999999866431 2 111 00 01111
Q ss_pred ----------cEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHH
Q psy10858 166 ----------KVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRL 231 (457)
Q Consensus 166 ----------~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRl 231 (457)
++..=||-..+.|. -+|.|-|.- .+..-..+++.+.++|.. +++.+++||||+-|||
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~ 222 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRV 222 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHH
Confidence 12222332111111 144443321 111234677888999965 7999999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
+||.|++++.+++++|||||-||...|-..-++++.+.+.+++||++.||+..+.. +|-|.++-
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999999999988889999999999999987 78887774
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.85 E-value=5.4e-22 Score=188.06 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=111.0
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~ 187 (457)
..++++.+|++++|+||||||||||||+|++.. .+..|.... ..+..++|+.|.. ..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~---~~~~~~d~-- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIF---TRIGAEDS-- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEE---EEecCccc--
Confidence 455666789999999999999999999999543 222221110 0122344433321 11111111
Q ss_pred HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-HHHH
Q psy10858 188 FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQ 266 (457)
Q Consensus 188 ~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-~~i~ 266 (457)
.....+.+|++++| ++.+.+++.+|+++||||||+|+||..+..+. .+++
T Consensus 85 ----------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~ 135 (202)
T cd03243 85 ----------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE 135 (202)
T ss_pred ----------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22344567777775 77778888999999999999999999888775 4577
Q ss_pred HHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858 267 VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 267 ~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
.+.+.+.++|++||+.+.++.++++..++.|++...+...++.
T Consensus 136 ~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 136 HLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 7767799999999999888888899999999998887764443
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=3.4e-20 Score=218.80 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=148.0
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------cCCCCCceEEEEcCccCCCCchh----------hhc--
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------GLKNISQGEIWVLGGHPASIYHK----------TAG-- 164 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------Gll~p~sG~I~i~G~~~~~~~~~----------~~r-- 164 (457)
|+||+.+|+-|.++++.|.+|||||||++-.. |... -+--|.++-.++....+. ..|
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSV-FSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccc-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 89999999999999999999999999998443 3322 123456655444321100 000
Q ss_pred -------C-----------------------------cEEEEcCCC-----------------CC--------CCCCCHH
Q psy10858 165 -------S-----------------------------KVGYMPQEL-----------------AM--------FGELTIK 183 (457)
Q Consensus 165 -------~-----------------------------~IGyvpQ~~-----------------~L--------~~~lTV~ 183 (457)
+ .+.|+|.-. .- .-+|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 012222210 00 1246777
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVR 258 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r 258 (457)
|.+.||... ..+ .+.-+.+..+||.. +.++..+|||||.||+-||..|..+ +.++||||||+||++...
T Consensus 1665 ea~~~F~~~-----~~i-~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~ 1738 (1809)
T PRK00635 1665 EVAETFPFL-----KKI-QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQK 1738 (1809)
T ss_pred HHHHHhhcc-----HHH-HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHH
Confidence 776666321 122 23345678889965 7899999999999999999999865 789999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe------CCeEEEecChhhhhhc
Q psy10858 259 KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY------KGRIIAQDSPDGFKSK 311 (457)
Q Consensus 259 ~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~------~GkI~~~gs~~~l~~~ 311 (457)
+.++++++.+.+.|.|||++.||++.+..||.|+=|- .|+|++.|+|+++...
T Consensus 1739 ~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1739 SALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 9999999999999999999999999999999999884 6899999999999764
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=3.6e-20 Score=210.05 Aligned_cols=132 Identities=24% Similarity=0.386 Sum_probs=113.5
Q ss_pred CCCCCHHHHHHHhhhhcCCCHH----------HHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--c
Q psy10858 177 FGELTIKETLNFFGMIYGMDES----------IWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--Q 242 (457)
Q Consensus 177 ~~~lTV~EnL~~~~~l~g~~~~----------~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~ 242 (457)
+..+||.|.+.|.-.+ +.+.. ++.+++. +++.++|.+ +++++.+|||||||||.||+||+.+| +
T Consensus 434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence 4568999998885443 33332 3444554 677888864 68999999999999999999999997 9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhh
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKS 310 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~ 310 (457)
+|||||||+||||..++.++++++.+++.|.|||+|||+++++..||+|++| ++|+|++.|+++++..
T Consensus 512 llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 512 LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999988888899999999999999889999999 9999999999999864
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.4e-20 Score=199.94 Aligned_cols=136 Identities=26% Similarity=0.390 Sum_probs=111.4
Q ss_pred CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ceEEEeCCCCCC
Q psy10858 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QLIILDEPCVGV 253 (457)
Q Consensus 179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~lLILDEPTsGL 253 (457)
+|||.|-..||...- .+. +.-+.+..+||.. +.+++.+|||||.|||-||.-|.... -++||||||+||
T Consensus 783 ~MTveEA~~FF~~~p-----~I~-rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAIP-----KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcch-----HHH-HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 366667666665431 122 2334566788864 78999999999999999999999876 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 254 DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 254 Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
-..-.+++++.+..+.++|.|||++.|+|+.++.||.|+=| ..|+|++.|+|+++.+.. .+....|+
T Consensus 857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~--~S~Tg~yL 929 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK--ASYTGKYL 929 (935)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCc--cchhHHHH
Confidence 99999999999999999999999999999999999999887 479999999999998642 34444444
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.83 E-value=1.6e-20 Score=179.44 Aligned_cols=139 Identities=22% Similarity=0.313 Sum_probs=108.3
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+.+|++|++++|++++|.||||+||||++|+|+|+. + ..++|+-. ++.+..+++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~-------------la~~G~~v--pa~~~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------I-------------MAQIGCFV--PAEYATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------H-------------HHHcCCCc--chhhcCccCh
Confidence 68999999999999999999999999999999999884 0 11233211 4455566777
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM- 261 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i- 261 (457)
+++.. .++.. ..++..+++|+|++|+ +.+.+++.+|+++|||||++|+||.....+
T Consensus 73 d~I~~---------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 73 NRLLS---------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred hheeE---------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 77632 22232 2456778999999975 666778999999999999999999776665
Q ss_pred HHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858 262 WDLLQVFVGKGRTVIMTTQYIEEAND 287 (457)
Q Consensus 262 ~~~i~~~~~~g~TIIisTH~~~ea~~ 287 (457)
+.+++.+.+.|.++|++||+.+.++.
T Consensus 131 ~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 131 LAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHhcCCEEEEECChHHHHHH
Confidence 55577777789999999999998865
No 410
>KOG0064|consensus
Probab=99.83 E-value=1.9e-20 Score=196.12 Aligned_cols=180 Identities=17% Similarity=0.249 Sum_probs=137.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.-|.++|+-.--..+ .+++..++|+|++|--+-|+||||||||+|+++|.|+.|...|...+ + ...+|
T Consensus 480 ~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P--------~~~~m 547 (728)
T KOG0064|consen 480 NGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---P--------RPNNI 547 (728)
T ss_pred cceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---C--------CCcce
Confidence 347778877766553 67899999999999999999999999999999999999987776653 1 12459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-----hcCCCHHHHHHHHHHHHhHcCCCC----------CCCCCCCCChhHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGM-----IYGMDESIWLFQMRKYSHVLKLPN----------LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~-----l~g~~~~~~~~~~~~ll~~l~L~~----------~~~~~~~LSGGqkQRls 232 (457)
-|+||.|.+- --|.+|.+-|.-. -+|..+.+. ..+++.+.|++ ...--.-||||+|||++
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL----~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~ 622 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDL----EAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMG 622 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHH----HHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHH
Confidence 9999999764 3477777755422 235554443 33333333321 11122469999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~ 287 (457)
+||.+-|+|+.-+|||-||++-+.....+++..+. -|.+.|-+||....-..
T Consensus 623 mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 623 MARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred HHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 99999999999999999999999999988887643 59999999999876654
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.4e-19 Score=204.84 Aligned_cols=131 Identities=25% Similarity=0.369 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHhhhhcCCCH----------HHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ce
Q psy10858 178 GELTIKETLNFFGMIYGMDE----------SIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QL 243 (457)
Q Consensus 178 ~~lTV~EnL~~~~~l~g~~~----------~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~l 243 (457)
-.|||.|.+.|+..+. .+. .++..+++ .+..++|.. +++.+.+|||||+|||.||+||+.+| ++
T Consensus 433 ~~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 433 SELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred hcCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 4688988888876642 111 12233332 356678854 58999999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhh
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKS 310 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~ 310 (457)
|||||||+||||..++.++++++.++++|.|||+|||+++++..||+|++| ++|+|++.|+++++..
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 999999999999999999999988888899999999999999889999999 9999999999998854
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=184.65 Aligned_cols=178 Identities=28% Similarity=0.370 Sum_probs=140.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--------KNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL- 174 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--------l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~- 174 (457)
..+++||||+|++|++++++|+|||||||+|+||.|. ++|++|.|.+--.. --+.+|-+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-----------~~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-----------VSALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-----------hhhccCcccc
Confidence 4599999999999999999999999999999999997 47899988762111 112344432
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 175 ~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
.-|...|+.|++. ...| + -....+++...|+.+ ..++.++||-|||.|+.||.++...|.+++.||-.|
T Consensus 465 p~f~~~tilehl~---s~tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 465 PEFGEVTILEHLR---SKTG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred cccCchhHHHHHh---hccC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 2244667888773 1111 1 122456788888854 357889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEE
Q psy10858 252 GVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND--ASEVAFLYKGRII 300 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~ 300 (457)
.||+.+...+..-+..+ ++-|.|++++||..+...+ -|+++++.=|++.
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999998886665 5669999999999998865 5999988877653
No 413
>KOG0066|consensus
Probab=99.80 E-value=1.1e-20 Score=194.26 Aligned_cols=208 Identities=20% Similarity=0.226 Sum_probs=153.5
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCCCceEEEEcCccCCCCchh----
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLGGHPASIYHK---- 161 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl---l~p~sG~I~i~G~~~~~~~~~---- 161 (457)
-|.++|.+.+-.+ +..+.|.|+.|-.|..|||+||||-|||||||.|+.. ++| .=.+++..+.+......
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHH
Confidence 4888898888877 8899999999999999999999999999999999865 344 34455555544221100
Q ss_pred hh---cCcEEEEcCCC-----CCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHH
Q psy10858 162 TA---GSKVGYMPQEL-----AMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRR 230 (457)
Q Consensus 162 ~~---r~~IGyvpQ~~-----~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQR 230 (457)
.+ .++..++-.+. .--...|+.|-|.- +..++.+.......++.+++.-+|+.. .+++...+|||.|-|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 00 11222211111 11234567666643 333443434445667778888888853 578889999999999
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~ 302 (457)
|+|||||..+|-+|.|||||+.||..+...+-++++-+ .+|.+|||||-.++.. |+.|+-|++-++...
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyY 490 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYY 490 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHHhhhhhhhhhhh
Confidence 99999999999999999999999999888777777665 4699999999999975 999999998887543
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.8e-18 Score=171.44 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCCCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-c
Q psy10858 219 PVKYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A 288 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~ 288 (457)
..+.||+||||++++|++|+ .+|+++||||||++||+..++.+++.+... + .++++||+.+++.. |
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccchh
Confidence 45668999999999999985 799999999999999999999999997653 2 46777777776644 5
Q ss_pred ---CeEEEEeCCeE
Q psy10858 289 ---SEVAFLYKGRI 299 (457)
Q Consensus 289 ---dri~im~~GkI 299 (457)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.76 E-value=1.6e-18 Score=166.81 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=110.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+.+++++++++ ++++|.||||+||||+||++++..-. |+ .|..+. ....+++|+.| +|..+++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp-----~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP-----ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec-----cccceecceee---EeccCCch
Confidence 5689999999987 99999999999999999999875422 11 121111 12356788765 56777887
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH--hhcCCceEEEeCC---CCCCCHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA--ILHKPQLIILDEP---CVGVDPLVR 258 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A--Ll~~P~lLILDEP---TsGLDp~~r 258 (457)
|++.... |.=+..++.++.+ .+.+|+++||||| |+++|+.+.
T Consensus 84 ~~ls~g~---------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 84 DDLAGGR---------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hhhccCc---------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 7774321 2112222233333 3579999999999 888887552
Q ss_pred HHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 259 KRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 259 ~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
.+.+++.+.+. +.++|++||+.+..+.+|++..+++|++...++.+++..
T Consensus 131 --~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~~ 181 (216)
T cd03284 131 --AWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVVF 181 (216)
T ss_pred --HHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence 34456655555 899999999987666688877778999988777766643
No 416
>KOG0063|consensus
Probab=99.72 E-value=3.7e-17 Score=168.28 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=138.7
Q ss_pred EEeCCCCceeEeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858 97 KEELKPSNVVLNNCSLVVKRRE-----FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Ge-----i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp 171 (457)
++|.+. +.-+.+..|.|+.|| ++..+|.||.||||+++|++|.++|++| | ++ +.-.|+|=|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~-----~-e~-------p~lnVSykp 408 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG-----G-EI-------PVLNVSYKP 408 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc-----C-cc-------cccceeccc
Confidence 345543 445778889999885 7899999999999999999999999875 2 22 123588999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC 250 (457)
Q Consensus 172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT 250 (457)
|..+--..-||++.+.---+---+.. .-+...++-+.+++ .|+-+.+||||++|||++|.+|-..+++.+.|||.
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~p----qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHP----QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCH----HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 99877667789987642111101111 22344455555544 58889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 251 VGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 251 sGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
+-||...|..--..++. ....++|-++|.||.-.+.. +||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999887777544 45678999999999988876 89998764
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=1.7e-17 Score=164.96 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=102.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~ 196 (457)
.-++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+....++++||.. +...++|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 568999999999999999999999999999999999885432 233445678899965 455667766531
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy10858 197 ESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276 (457)
Q Consensus 197 ~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TII 276 (457)
+. . |+ .++++| ++|+++|+|||++ ++.+..+++.+ +.|+|||
T Consensus 182 k~------~--------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI 223 (270)
T TIGR02858 182 KA------E--------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEAL-HAGVSII 223 (270)
T ss_pred HH------H--------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEE
Confidence 00 0 11 233344 6999999999974 33344445554 4699999
Q ss_pred EEcCChhH--H------------hccCeEEEEeCCeEEEecChhhhh
Q psy10858 277 MTTQYIEE--A------------NDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 277 isTH~~~e--a------------~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
+|||+.+. + ..++|+++|++|+ ..|+++++.
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99997654 4 2279999999887 677776654
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.68 E-value=3e-17 Score=153.93 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEcCChhHHhccCeEEE
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGK-GRTVIMTTQYIEEANDASEVAF 293 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-~~i~~~~~~-g~TIIisTH~~~ea~~~dri~i 293 (457)
.++..+++|+|++|...++. .+.+|+++|+|||++|+||..+..+. .+++.+.++ +.++|++||+++....+++.--
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~ 133 (185)
T smart00534 55 LAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPG 133 (185)
T ss_pred hhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCcc
Confidence 35667899999887433333 24599999999999999999887764 557776664 8999999999975555664333
Q ss_pred EeCCeEE
Q psy10858 294 LYKGRII 300 (457)
Q Consensus 294 m~~GkI~ 300 (457)
++++++.
T Consensus 134 v~~~~~~ 140 (185)
T smart00534 134 VRNLHMS 140 (185)
T ss_pred ceEEEEE
Confidence 3444443
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=2.2e-15 Score=144.76 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=93.4
Q ss_pred ceeEeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC-C
Q psy10858 104 NVVLNNCSLVVKRR--EFFVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF-G 178 (457)
Q Consensus 104 ~~aL~~vs~~I~~G--ei~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~-~ 178 (457)
..|=+|+++ .++ .+++|.||||+|||||||.|. +.+ +..|..... ..-+++|..|...-. .
T Consensus 16 ~~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a-----------~~~~~~~~d~i~~~l~~ 81 (213)
T cd03281 16 SFVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA-----------DSATIGLVDKIFTRMSS 81 (213)
T ss_pred ceEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc-----------CCcEEeeeeeeeeeeCC
Confidence 334455555 444 799999999999999999998 434 455655431 123578888864322 2
Q ss_pred CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHH
Q psy10858 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR 258 (457)
Q Consensus 179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r 258 (457)
.-++.+++. ++ .-+-||+++|++++.+|+++|||||++|+|+...
T Consensus 82 ~~si~~~~S----------------------------------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 82 RESVSSGQS----------------------------------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred ccChhhccc----------------------------------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 223322220 11 3355889999999999999999999999999765
Q ss_pred HH-HHHHHHHHHhC---CcEEEEEcCChhHHhc
Q psy10858 259 KR-MWDLLQVFVGK---GRTVIMTTQYIEEAND 287 (457)
Q Consensus 259 ~~-i~~~i~~~~~~---g~TIIisTH~~~ea~~ 287 (457)
.. ++.+++.+.+. +.++|++||+.+.++.
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 44 46677776554 3589999999998864
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.61 E-value=1.1e-15 Score=171.35 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=96.8
Q ss_pred eeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858 109 NCSLVVKRR-EFFVLLGASSAGKTTLLKAIVGL-KNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET 185 (457)
Q Consensus 109 ~vs~~I~~G-ei~gLlGpNGaGKTTLLk~L~Gl-l~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En 185 (457)
.+|+++..| ++++|.||||+|||||||+|+|. +.+..| .|.. + ....++|+.|....
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa-~----------~~~~~~~~d~i~~~--------- 372 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPA-N----------EHSEIPYFEEIFAD--------- 372 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccC-C----------ccccccchhheeee---------
Confidence 478888888 99999999999999999999987 334333 1110 0 00123333222110
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-HHH
Q psy10858 186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL 264 (457)
Q Consensus 186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i-~~~ 264 (457)
+...+ ......+++|+||+|++.+++++ .+|.++|||||++|+||.....+ +.+
T Consensus 373 ---------i~~~~---------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ai 427 (771)
T TIGR01069 373 ---------IGDEQ---------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISI 427 (771)
T ss_pred ---------cChHh---------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHH
Confidence 11100 01234678999999999998887 78999999999999999999999 566
Q ss_pred HHHHHhCCcEEEEEcCChhHHh
Q psy10858 265 LQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 265 i~~~~~~g~TIIisTH~~~ea~ 286 (457)
++.+.+.|.++|++||+.+...
T Consensus 428 Le~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 428 LEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHhcCCEEEEECChHHHHH
Confidence 8887778999999999988754
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.59 E-value=5.3e-14 Score=145.34 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=67.2
Q ss_pred CCCCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--
Q psy10858 219 PVKYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-- 287 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-- 287 (457)
....+|.||||++++|++|+ .+|+|||||||+++||+..++.+++.+..+ +..+++|||+.+.+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhh
Confidence 34679999999999999986 799999999999999999999999987542 4589999999887643
Q ss_pred -cCeEEEEeCCeE
Q psy10858 288 -ASEVAFLYKGRI 299 (457)
Q Consensus 288 -~dri~im~~GkI 299 (457)
.++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 358999999997
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=1.7e-14 Score=139.85 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=93.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
..+.+|++|++.+|++++|.||||+||||++++++| .+.+..|...+ +.. -+++|..|= +-.+..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~-a~~----------~~~~~~~~i---~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP-ASS----------ATLSIFDSV---LTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE-cCc----------eEEeccceE---EEEecC
Confidence 578999999999999999999999999999999999 66788887654 221 134444332 111111
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM- 261 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i- 261 (457)
.|++.- +. ++++ .+-++++-+..-+.+|.++|||||.+|.|+.....+
T Consensus 84 ~d~~~~-----~~-------------------------StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~ 132 (222)
T cd03287 84 SDSIQH-----GM-------------------------STFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA 132 (222)
T ss_pred cccccc-----cc-------------------------chHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence 222110 00 0011 111222222233468999999999999998777775
Q ss_pred HHHHHHHHhC-CcEEEEEcCChhHHhc
Q psy10858 262 WDLLQVFVGK-GRTVIMTTQYIEEAND 287 (457)
Q Consensus 262 ~~~i~~~~~~-g~TIIisTH~~~ea~~ 287 (457)
+.+++.+.+. +.++|++||+.+.++.
T Consensus 133 ~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 133 YATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 6667777665 8899999999998653
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=1.2e-14 Score=138.74 Aligned_cols=180 Identities=22% Similarity=0.276 Sum_probs=96.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC--CCCceEEEEcCccCCC--CchhhhcCcEEEEcCCCCCC-----
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLK--NISQGEIWVLGGHPAS--IYHKTAGSKVGYMPQELAMF----- 177 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll--~p~sG~I~i~G~~~~~--~~~~~~r~~IGyvpQ~~~L~----- 177 (457)
++..+.+.+ .+..|+||||+||||++.+|. .+- +..+.+..-...-+.. .........|...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 466666654 499999999999999999993 332 1111111000000000 00011122344444443221
Q ss_pred CCCCHHHHHHHhhh-hcCCCH-HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCC
Q psy10858 178 GELTIKETLNFFGM-IYGMDE-SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCV 251 (457)
Q Consensus 178 ~~lTV~EnL~~~~~-l~g~~~-~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTs 251 (457)
....+...+.-... -+.+.. ....+.+...+....+. +..||||||.+++||.-|+ ...+++|||||.+
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~-----~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~ 169 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGIS-----PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDA 169 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTT-----TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc
Confidence 00111000000000 000010 11123344445444442 2389999999999986653 5679999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
+||+..++.+++++.... ++.-+|++||+-..+..+|+.+.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 170 ALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccc
Confidence 999999999999988764 457899999998888888875544
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=1.1e-14 Score=138.61 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCChh--HHHHHHHHHHhhcCCceEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy10858 221 KYLSGG--QKRRLSFTIAILHKPQLIILDEPC-----VGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 221 ~~LSGG--qkQRlsLA~ALl~~P~lLILDEPT-----sGLDp~~r~~i~~~i~~~~ 269 (457)
+..||+ |++++.||++++++|++++||||| +||||..++.+++.++.++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 344444 999999999999999999999999 9999999999999987764
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.52 E-value=7.5e-14 Score=147.41 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=118.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--------CchhhhcCcEEEEcCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--------IYHKTAGSKVGYMPQELA 175 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--------~~~~~~r~~IGyvpQ~~~ 175 (457)
..+++++ |++.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.+ ......++.|+|+.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5689999 9999999999999999999999999999999999999996654321 112234678999986432
Q ss_pred CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce-EEEeCC--CCC
Q psy10858 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL-IILDEP--CVG 252 (457)
Q Consensus 176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l-LILDEP--TsG 252 (457)
- +.+.+. +.. ..-.+.+.....|..-+ -...+|+ -.|+|+- ++ +.+.|| |+|
T Consensus 225 ~-----~~~r~~--~~~-------~a~~iAEyfr~~g~~Vl-l~~Dslt-------r~A~A~r---Eisl~~ge~P~~~G 279 (438)
T PRK07721 225 P-----ALMRIK--GAY-------TATAIAEYFRDQGLNVM-LMMDSVT-------RVAMAQR---EIGLAVGEPPTTKG 279 (438)
T ss_pred C-----HHHHHH--HHH-------HHHHHHHHHHHCCCcEE-EEEeChH-------HHHHHHH---HHHHhcCCCCcccc
Confidence 1 111111 000 01112222221222100 0112222 1222220 00 233564 689
Q ss_pred CCHHHHHHHHHHHHHHH--hCCc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhh
Q psy10858 253 VDPLVRKRMWDLLQVFV--GKGR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 253 LDp~~r~~i~~~i~~~~--~~g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~ 307 (457)
+||.....++++++.+. +.|. ||++.+|||++ ..||++.+|.+|+|+.+++.++
T Consensus 280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 99999999999988875 3575 99999999995 5699999999999999998765
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=2.3e-14 Score=123.94 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=64.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+|++++|++++||+++|+||||||||||++++. +|++.+.|.++........++.++|+||+ ++ +.|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhHH
Confidence 57999999999999999999999999999999986 89999999888665544556677888887 44 45899
Q ss_pred HHHHH
Q psy10858 184 ETLNF 188 (457)
Q Consensus 184 EnL~~ 188 (457)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99976
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.49 E-value=4.2e-14 Score=158.88 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=99.8
Q ss_pred eEEEe-CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE-EEcCCCCCCCCCCHHHHHHH
Q psy10858 111 SLVVK-RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-YMPQELAMFGELTIKETLNF 188 (457)
Q Consensus 111 s~~I~-~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV~EnL~~ 188 (457)
++.+. .+.++.|.|||++||||+||.+....- -.++| |||-... ..+++.+++.
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------------maq~G~~vpa~~~--~~i~~~~~i~- 375 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------------MAKSGLPIPANEP--SEIPVFKEIF- 375 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------------HHHhCCCcccCCC--ccccccceEE-
Confidence 44444 457899999999999999999853310 01222 4443311 0122222221
Q ss_pred hhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH-HHH
Q psy10858 189 FGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQ 266 (457)
Q Consensus 189 ~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~-~i~ 266 (457)
. .++.. ...+..+++|+||+|++.|++++ .+|.++|||||++|+||.....+.. +++
T Consensus 376 -~-------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile 434 (782)
T PRK00409 376 -A-------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILE 434 (782)
T ss_pred -E-------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 0 11111 23466789999999999999999 8999999999999999999998865 577
Q ss_pred HHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858 267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 267 ~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~ 301 (457)
.+.+.|.++|++||+.+.+.. +++..++ ++.+..
T Consensus 435 ~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 435 YLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 777779999999999988765 5555444 445544
No 428
>KOG0063|consensus
Probab=99.47 E-value=1.2e-13 Score=142.57 Aligned_cols=171 Identities=19% Similarity=0.284 Sum_probs=119.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE--------cCCC---CCCCCCCHH
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM--------PQEL---AMFGELTIK 183 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv--------pQ~~---~L~~~lTV~ 183 (457)
.+|++.|++|-||-||||-+|+++|-++|.-|.-- ++ +.+. .-++|- ++.. .+- ...=.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p-p~w~-------~il~~frgselq~yftk~le~~lk-~~~kp 167 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP-PDWQ-------EILTYFRGSELQNYFTKILEDNLK-AIIKP 167 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC-cchH-------HHhhhhhhHHHhhhhhhhcccccc-CcCCh
Confidence 47999999999999999999999999999866431 01 1000 111111 1111 010 00001
Q ss_pred HHHH-HhhhhcC-----CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858 184 ETLN-FFGMIYG-----MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256 (457)
Q Consensus 184 EnL~-~~~~l~g-----~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~ 256 (457)
+++. ++....+ +.....+....++.+.++|.. +++-+.+||||+-||.+||.|.+++.++.++|||.+.||..
T Consensus 168 Qyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVK 247 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVK 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHH
Confidence 1111 1111111 111222334556677777755 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 257 VRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 257 ~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
.|.+--..|+.+.....=||+|.||+..... .|-+.++-
T Consensus 248 QRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 248 QRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999888888888888999999999999986 67777764
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.46 E-value=7.2e-14 Score=137.63 Aligned_cols=177 Identities=19% Similarity=0.131 Sum_probs=108.9
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEc--CccCCCCchhhhcC---cEEEEcCCCCCCCCC---
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVL--GGHPASIYHKTAGS---KVGYMPQELAMFGEL--- 180 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~--G~~~~~~~~~~~r~---~IGyvpQ~~~L~~~l--- 180 (457)
=+.+.+||..+|+|++|+|||||++.|.+......+ .+++. +... .+.....+ .+-++.+-.. .+..
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~ev~el~~~I~~~~v~~~~~~-~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EEVTDMQRSVKGEVIASTFDE-PPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--ccHHHHHHHhccEEEEecCCC-CHHHHHH
Confidence 368999999999999999999999999999877533 33332 2111 11111111 2222322221 1100
Q ss_pred ---CHHHHHHHhhhhcCCCH----HHHHHHHHHHHhHcCCCCCCCCCCCCChhH--------HHHHHHHHHhhcCCceEE
Q psy10858 181 ---TIKETLNFFGMIYGMDE----SIWLFQMRKYSHVLKLPNLERPVKYLSGGQ--------KRRLSFTIAILHKPQLII 245 (457)
Q Consensus 181 ---TV~EnL~~~~~l~g~~~----~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq--------kQRlsLA~ALl~~P~lLI 245 (457)
++.+...++. ..|... +++ .+..+..+.+.. .....+|||+ +||+++||++..+++|.+
T Consensus 87 ~~~~~~~~a~~~~-~~G~~vll~iDei-~r~a~a~~ev~~----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 87 VAEMVLEKAKRLV-EHGKDVVILLDSI-TRLARAYNTVVP----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEEECH-HHhhhhhhhccc----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0111111111 111110 111 111111121111 2234479999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858 246 LDEPCVGVDPLVRKR-MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300 (457)
Q Consensus 246 LDEPTsGLDp~~r~~-i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~ 300 (457)
| ||+.+|+..... ++ ++.++..+.|.|+.||.+.+....|.|.+|++|+++
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK 212 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence 9 999999655443 43 455554688999999999999999999999999984
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.45 E-value=2e-13 Score=148.70 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=70.8
Q ss_pred CCCChhHHHHHHHHHHhhcC----CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 221 KYLSGGQKRRLSFTIAILHK----PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl~~----P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
..|||||+||++||++++.. |++|||||||+|||+..+..+.+.+..+. ++++||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 46899999999999999985 69999999999999999999999988775 48999999999998888999999998
Q ss_pred Ce
Q psy10858 297 GR 298 (457)
Q Consensus 297 Gk 298 (457)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=2.8e-13 Score=156.88 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHhhc----------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAILH----------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~ALl~----------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
.++++.+|||||++||+||+||+. +|++|||||||+|||+.++..+++++..+.+.|++|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 567899999999999999999985 7999999999999999999999999888777899999999999998
Q ss_pred hc-cCeEEEEeCC
Q psy10858 286 ND-ASEVAFLYKG 297 (457)
Q Consensus 286 ~~-~dri~im~~G 297 (457)
.. +|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 76 8999999754
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.44 E-value=1.6e-13 Score=148.32 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCCCCCChhHHHHHHHHHHhh----------cCCceEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858 218 RPVKYLSGGQKRRLSFTIAIL----------HKPQLIILDEPC-VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsLA~ALl----------~~P~lLILDEPT-sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~ 286 (457)
..+.+||||||||++||+||+ .+|++||||||| ++||+..+..+++++..+ .|.|||++||+.+...
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh
Confidence 356899999999999999987 599999999998 789999999999998876 5899999999987777
Q ss_pred ccCeEEEEeC-CeE
Q psy10858 287 DASEVAFLYK-GRI 299 (457)
Q Consensus 287 ~~dri~im~~-GkI 299 (457)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 554
No 433
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=3.8e-12 Score=123.10 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=92.3
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+-+|++|++++|++++|.||||+||||+++++++..-... . |-.+.. . ..+++++ +.+|..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~----~-G~~vpa---~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ----M-GMDVPA---K--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH----c-CCccCc---c--ccEeccc---cEEEEecCcc
Confidence 678999999999999999999999999999999998743211 0 211110 0 1122222 2223333333
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
|++.... +++. .+-++++-....+.+|+++|||||++|+||.....+..
T Consensus 84 d~~~~~~------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ 132 (218)
T cd03286 84 DDIMKGE------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAH 132 (218)
T ss_pred cccccCc------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHH
Confidence 3332110 0111 12233333333346899999999999999999988877
Q ss_pred H-HHHHHhC-CcEEEEEcCChhHHhc
Q psy10858 264 L-LQVFVGK-GRTVIMTTQYIEEAND 287 (457)
Q Consensus 264 ~-i~~~~~~-g~TIIisTH~~~ea~~ 287 (457)
. ++.+.+. +.++|++||+++.+..
T Consensus 133 ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 133 AVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 7 7777665 8999999999998754
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.40 E-value=1e-12 Score=121.89 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=54.6
Q ss_pred CCCCCChhHHHHHHHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 219 PVKYLSGGQKRRLSFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
+...+|.|+||.+.++.++...+ .++++|||-++|.|..++.+++++....+.+.-||+|||+...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45667999999999998888766 89999999999999999999999877655588999999997643
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=4.3e-12 Score=139.42 Aligned_cols=144 Identities=23% Similarity=0.361 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHhhhhc--CCCHHHHHHHHHHH------HhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC--CceEE
Q psy10858 178 GELTIKETLNFFGMIY--GMDESIWLFQMRKY------SHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK--PQLII 245 (457)
Q Consensus 178 ~~lTV~EnL~~~~~l~--g~~~~~~~~~~~~l------l~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLI 245 (457)
..|++.+.+.|+..+. ..........+.++ +-.+||.. ++|...+|||||.||+-||..+-.+ -=+++
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 3567777777776553 11111112222222 23456764 6999999999999999999998654 35789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHH
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
||||+.||-+.--+++.+.++.+++.|-|+|+|.||.+.+..||+|+=| +.|+|+++|+|+++++.. .++-.
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~--~SlTG 584 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP--ESLTG 584 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC--cchhh
Confidence 9999999999999999999999999999999999999999999999876 689999999999999763 46777
Q ss_pred HHHh
Q psy10858 320 VFYK 323 (457)
Q Consensus 320 ~f~~ 323 (457)
.|+.
T Consensus 585 ~YLs 588 (935)
T COG0178 585 QYLS 588 (935)
T ss_pred Hhhc
Confidence 7764
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.39 E-value=3.6e-12 Score=123.98 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTL-LKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTL-Lk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+.++++.+.+++ .+++|++++|.|+|||||||| ++++.++.++... +.
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------------~~ 56 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------------VS 56 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------------EE
Confidence 566777777765 279999999999999999999 7999988764322 23
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceE
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLI 244 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lL 244 (457)
|+.. +.|..+.+..... .|.+-+. +...=.+...+-. ..+|+++.++-.+++.+- .+|+++
T Consensus 57 yi~~------e~~~~~~~~~~~~-~g~~~~~-------~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~l 121 (230)
T PRK08533 57 YVST------QLTTTEFIKQMMS-LGYDINK-------KLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVI 121 (230)
T ss_pred EEeC------CCCHHHHHHHHHH-hCCchHH-------HhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEE
Confidence 4332 1233333332211 2222111 0000000001111 236666655544444333 369999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q psy10858 245 ILDEPCVGV----DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE 284 (457)
Q Consensus 245 ILDEPTsGL----Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~e 284 (457)
++||||+++ |+..++.++++++.+++.|.|++++ |++..
T Consensus 122 VIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 122 IIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred EEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 999999999 8888899999988777778876664 55543
No 437
>PRK13695 putative NTPase; Provisional
Probab=99.37 E-value=3.9e-13 Score=124.33 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=64.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
.+....+||+++-++.+++..+.+|++|++|| |+.++|+.. .+.+..+.+.|.++|+++|+-.....+|+|..+
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~ 148 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSR 148 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECchhhHHHHHHHhcc
Confidence 45566799999999999999999999999999 444555443 444444446689999999995444569999999
Q ss_pred eCCeEEEe
Q psy10858 295 YKGRIIAQ 302 (457)
Q Consensus 295 ~~GkI~~~ 302 (457)
.+|+|+..
T Consensus 149 ~~~~i~~~ 156 (174)
T PRK13695 149 PGGRVYEL 156 (174)
T ss_pred CCcEEEEE
Confidence 99999765
No 438
>PRK10869 recombination and repair protein; Provisional
Probab=99.37 E-value=1.7e-12 Score=141.17 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858 222 YLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKG 297 (457)
Q Consensus 222 ~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~G 297 (457)
.|||||+||++||++++. +|+++|||||++|||+..+..++++++.+. ++.+||+|||++..+..||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 489999999999999997 589999999999999999999999988875 479999999999988889999999875
Q ss_pred e
Q psy10858 298 R 298 (457)
Q Consensus 298 k 298 (457)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 439
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=2.1e-12 Score=135.92 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=125.4
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++.+.++..|..+ ..+++.+ |++.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 357778888888653 6788885 99999999999999999999999999999999998876655321
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-------cC
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-------HK 240 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-------~~ 240 (457)
.+|.|.+.......++... . .=....+.|.|+|+|++.+.+.+ ++
T Consensus 195 ------------~ev~e~~~~~l~~~gl~~t------------v----vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 195 ------------REVKDFIRKELGEEGMRKS------------V----VVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred ------------ccHHHHHHHHhhhccccee------------E----EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3555554321111111100 0 01245678999999999999988 89
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~ 305 (457)
+-+|++|+||...|+. ++++..+...-..|.+..+.||....++++.+ ..+|.|.+..+.
T Consensus 247 ~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 247 NVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred cEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 9999999999999996 66666665554458899998995444555433 478998777654
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.35 E-value=2.1e-12 Score=146.59 Aligned_cols=79 Identities=30% Similarity=0.481 Sum_probs=70.0
Q ss_pred CCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 217 ~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
++++..|||||+| |++||++++.+|+++||||||+|||+..+..+.+++..+.+.+.+||++||+++....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4678999999999 4555667889999999999999999999999999987766668899999999987777999
Q ss_pred EEEEe
Q psy10858 291 VAFLY 295 (457)
Q Consensus 291 i~im~ 295 (457)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.34 E-value=7e-12 Score=115.81 Aligned_cols=142 Identities=16% Similarity=0.059 Sum_probs=96.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE 197 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~ 197 (457)
++.|.||.|+|||||.-.++- ..+. | ..+.|+.= +.|..+.+..... .|++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g------------~~v~~~s~------e~~~~~~~~~~~~-~g~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--------G------------EPGLYVTL------EESPEELIENAES-LGWDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--------C------------CcEEEEEC------CCCHHHHHHHHHH-cCCCh
Confidence 367899999999998765432 2221 1 12334431 2244433332222 24442
Q ss_pred HHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCC---HHHHHHHHHHHHH
Q psy10858 198 SIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVD---PLVRKRMWDLLQV 267 (457)
Q Consensus 198 ~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLD---p~~r~~i~~~i~~ 267 (457)
.+ +...+. ...+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+++++..
T Consensus 54 ~~--------l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 54 ER--------LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred HH--------HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 21 112232 2256778899999998 5666666778999999999999999 8888888888888
Q ss_pred HHhCCcEEEEEcCChhH---------Hhc-cCeEEEEe
Q psy10858 268 FVGKGRTVIMTTQYIEE---------AND-ASEVAFLY 295 (457)
Q Consensus 268 ~~~~g~TIIisTH~~~e---------a~~-~dri~im~ 295 (457)
+++.|.|+|+++|+... +.. ||.++.|+
T Consensus 126 l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 126 LKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 88889999999998764 444 89888886
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.31 E-value=5e-12 Score=127.97 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=100.5
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHh
Q psy10858 110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFF 189 (457)
Q Consensus 110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~ 189 (457)
+++.++.|+.++|.|++|||||||+++|+|+++++.|.+.+.+ ..+..... +..+++..+...-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~~------------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGGQ------------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCCC-------------
Confidence 4577889999999999999999999999999999999888742 21111100 1223322221000
Q ss_pred hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858 190 GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 190 ~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~ 269 (457)
.....+ ..-.++.+|-.+|+++++|||.+ .+++++++...
T Consensus 201 -----------------------------~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~ 240 (308)
T TIGR02788 201 -----------------------------GLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN 240 (308)
T ss_pred -----------------------------CcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh
Confidence 000011 11245667788999999999996 45677776655
Q ss_pred hCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 270 ~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
..+.+++.|+|..+.....+|+..|..|++.+.|.+.+..
T Consensus 241 ~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 241 TGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred cCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 4344679999999966678999999999999988888775
No 443
>PRK01156 chromosome segregation protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=141.42 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCCCCCChhHHHHHHH------HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhC-C-cEEEEEcCChhHHhcc
Q psy10858 218 RPVKYLSGGQKRRLSF------TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGK-G-RTVIMTTQYIEEANDA 288 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsL------A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~-g-~TIIisTH~~~ea~~~ 288 (457)
..+..||||||+|++| |++|+.+|++++|||||+|||+..+..+.+++.. ++.. | .|||++||+++.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999976 4899999999999999999999999999999764 3333 3 4899999999988889
Q ss_pred CeEEEEe
Q psy10858 289 SEVAFLY 295 (457)
Q Consensus 289 dri~im~ 295 (457)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 444
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.28 E-value=9.7e-12 Score=144.16 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHhhc--------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAILH--------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~ALl~--------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~ 287 (457)
.++++.+|||||+++++||+||+. +|++|||||||+|||+.+++.+++.+..+.+.|+||+||||..+..+.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 358899999999999999999995 899999999999999999999999998888889999999998777776
Q ss_pred -cCeEEEEeC
Q psy10858 288 -ASEVAFLYK 296 (457)
Q Consensus 288 -~dri~im~~ 296 (457)
..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 567777654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.26 E-value=1.2e-10 Score=131.97 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=61.1
Q ss_pred hcCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh----------ccCeEEEEeCCeEEEecChh
Q psy10858 238 LHKPQLIILDEPCVGV-DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN----------DASEVAFLYKGRIIAQDSPD 306 (457)
Q Consensus 238 l~~P~lLILDEPTsGL-Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~----------~~dri~im~~GkI~~~gs~~ 306 (457)
.++|+++++|||+.+| ||..++.+.+.++..++.|.+++++||+++.+. .|+++++|.+|++...+..+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~ 729 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTRE 729 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence 5799999999999999 799999999998888888999999999999873 58999999999987666443
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.24 E-value=1.6e-11 Score=130.93 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=104.9
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E 184 (457)
.++++.++.+++|.+++|+||||+||||++..|++.+....|. .+|+++.++. ...++.|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS---YRIGGHE 303 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc---cchhHHH
Confidence 3567788888999999999999999999999999877555442 2588888876 3578999
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHH-HHHHHHHhhcCC-----ceEEEeCCCCCCCHHH
Q psy10858 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR-RLSFTIAILHKP-----QLIILDEPCVGVDPLV 257 (457)
Q Consensus 185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQ-RlsLA~ALl~~P-----~lLILDEPTsGLDp~~ 257 (457)
+|.+++.++|++........+......++.. ....+.+...+++- .+.-+.+++.++ .+|+||.++.+.|
T Consensus 304 QLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~--- 380 (484)
T PRK06995 304 QLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT--- 380 (484)
T ss_pred HHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---
Confidence 9999999988765433333444445556643 34556665444432 234455555555 7899999998833
Q ss_pred HHHHHHHHHHHHhCCcEEEEEcCC
Q psy10858 258 RKRMWDLLQVFVGKGRTVIMTTQY 281 (457)
Q Consensus 258 r~~i~~~i~~~~~~g~TIIisTH~ 281 (457)
+.+.++.....+.+=+|.|+-
T Consensus 381 ---l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 381 ---LNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred ---HHHHHHHhccCCCCEEEEeCC
Confidence 555555555566766666773
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.20 E-value=8.5e-11 Score=104.35 Aligned_cols=130 Identities=19% Similarity=0.121 Sum_probs=84.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES 198 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~ 198 (457)
++.|.|+||+||||+++.+++...+..|.+.+.+.+..... ..+.+.. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~----------------------~~~~~~~------~~~- 51 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE----------------------LTERLIG------ESL- 51 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH----------------------HHHHHhh------hhh-
Confidence 46899999999999999999988776666655433221100 1111100 000
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC----------CCCCHHHHHHHHHHHHHH
Q psy10858 199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC----------VGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT----------sGLDp~~r~~i~~~i~~~ 268 (457)
....+.+.+ ........+.++.+++..+++...+|+++++||++ ++.|...++.+.++....
T Consensus 52 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 123 (165)
T cd01120 52 ------KGALDNLII--VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA 123 (165)
T ss_pred ------ccccccEEE--EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 000001111 11222344566667888999999999999999999 456667778888887777
Q ss_pred HhCCcEEEEEcCChhHH
Q psy10858 269 VGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 269 ~~~g~TIIisTH~~~ea 285 (457)
++.+.|||+++|.....
T Consensus 124 ~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 124 RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hcCCceEEEEEecCCcc
Confidence 77799999999987544
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.20 E-value=2.3e-11 Score=140.51 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=69.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
.+..+..||||||||++||++++ ..|+++||||||+|||+..+..|++++..+.+ +.+||+|||++..+..||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhH
Confidence 35688999999999999999984 67799999999999999999999999877654 57899999999988779997
Q ss_pred EEEe
Q psy10858 292 AFLY 295 (457)
Q Consensus 292 ~im~ 295 (457)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 6553
No 449
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=6.7e-11 Score=140.10 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEcCChhHHh
Q psy10858 218 RPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-----GKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 218 ~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-----~~g~TIIisTH~~~ea~ 286 (457)
...+.||||||| |++||+||+.+|++|+|||||+|||+..+..+.+.+..+. ..|.|||++||+++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345789999999 9999999999999999999999999999999998865542 24889999999999885
Q ss_pred c
Q psy10858 287 D 287 (457)
Q Consensus 287 ~ 287 (457)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 3
No 450
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.4e-10 Score=130.16 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=69.2
Q ss_pred CCCCCCChhHHH------HHHHHHHhhcC-----C-ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEcCChhH
Q psy10858 218 RPVKYLSGGQKR------RLSFTIAILHK-----P-QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQYIEE 284 (457)
Q Consensus 218 ~~~~~LSGGqkQ------RlsLA~ALl~~-----P-~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~-TIIisTH~~~e 284 (457)
..+..||||||+ |+++|++++.+ | +++||||||++||+..+..+.+++..+...|. +||++||+++.
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~ 856 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL 856 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH
Confidence 347799999999 89999998864 3 67999999999999999999999887766565 89999999999
Q ss_pred HhccCeEEEEeCC
Q psy10858 285 ANDASEVAFLYKG 297 (457)
Q Consensus 285 a~~~dri~im~~G 297 (457)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 8889999999643
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.05 E-value=2.9e-10 Score=131.82 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEE
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVA 292 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~ 292 (457)
.+.+..||||||++++||++|+. .|+++|||||++|||+..+..+++++....+ +.++|++||+......||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 45678999999999999999985 6899999999999999999999999877643 578999999998777899987
Q ss_pred EEeC
Q psy10858 293 FLYK 296 (457)
Q Consensus 293 im~~ 296 (457)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 6653
No 452
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=5.2e-11 Score=126.10 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQEL 174 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~ 174 (457)
..||++|||+|++||+++|+|||||||||||+ .|+..|++| +|.++|.++...+.... ..+-+|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-~~LR~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-ETLDEIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-HHHHHHHHhh
Confidence 45899999999999999999999999999999 788888888 79999998865432221 1111788865
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.01 E-value=2.5e-09 Score=103.55 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=85.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIV-GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM 191 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~ 191 (457)
-+++|.++.|.|++|+|||||...++ +... .. .++.|+..+. +..+.+.- +.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g-------------------~~~~y~~~e~------~~~~~~~~-~~ 73 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG-------------------KKVYVITTEN------TSKSYLKQ-ME 73 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC-------------------CEEEEEEcCC------CHHHHHHH-HH
Confidence 58999999999999999999998774 2221 11 2344444321 22222211 11
Q ss_pred hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc--CCceEEEeCCCCC---CCHHHHHHHHHHHH
Q psy10858 192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH--KPQLIILDEPCVG---VDPLVRKRMWDLLQ 266 (457)
Q Consensus 192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~--~P~lLILDEPTsG---LDp~~r~~i~~~i~ 266 (457)
.++++-.+.. ....+..+.+. -......|.++++.+..+..++. +|+++++||||+. .|+.....+.+.++
T Consensus 74 ~~g~~~~~~~--~~g~l~i~~~~--~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~ 149 (234)
T PRK06067 74 SVKIDISDFF--LWGYLRIFPLN--TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAK 149 (234)
T ss_pred HCCCChhHHH--hCCCceEEecc--ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHH
Confidence 1233211100 00001111111 12234567899999999999997 9999999999964 45555555555555
Q ss_pred HHHhCCcEEEEEcCChhH
Q psy10858 267 VFVGKGRTVIMTTQYIEE 284 (457)
Q Consensus 267 ~~~~~g~TIIisTH~~~e 284 (457)
.+++.|.|+++++|...+
T Consensus 150 ~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 150 NLVDLGKTILITLHPYAF 167 (234)
T ss_pred HHHhCCCEEEEEecCCcC
Confidence 556779999999998654
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.00 E-value=1.8e-09 Score=102.59 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=76.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE 197 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~ 197 (457)
++.|.||+||||||+++.|.+.+.+ ..|.|...+.++.. . .....+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~---~~~~~~~i~q~~v---------------------- 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-V---HESKRSLINQREV---------------------- 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-c---ccCccceeeeccc----------------------
Confidence 6889999999999999999888864 45777665543311 0 0011122222110
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858 198 SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277 (457)
Q Consensus 198 ~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi 277 (457)
+ .....++. ++++||..+|+++++|||. |+.. ++..++. ...|..++.
T Consensus 57 --------------g-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~-a~~G~~v~~ 104 (198)
T cd01131 57 --------------G-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLET---IRLALTA-AETGHLVMS 104 (198)
T ss_pred --------------C-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHH-HHcCCEEEE
Confidence 0 00011111 4789999999999999996 5553 3333443 356899999
Q ss_pred EcCChhHHhccCeEEEE
Q psy10858 278 TTQYIEEANDASEVAFL 294 (457)
Q Consensus 278 sTH~~~ea~~~dri~im 294 (457)
|+|..+.+...+|++.|
T Consensus 105 t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 105 TLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EecCCcHHHHHhHHHhh
Confidence 99999877778887666
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.00 E-value=2.4e-09 Score=100.98 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
.+.....|-|+-=---+.+.+ ++--+.|||||-++|-|.-+-.+...++.+.+.|.-|||+||..-.... ..+|+-++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 445667899998766666666 4578999999999999999999999999998999999999999876655 56888887
Q ss_pred CCeE
Q psy10858 296 KGRI 299 (457)
Q Consensus 296 ~GkI 299 (457)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7654
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.95 E-value=5.8e-10 Score=105.04 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=68.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES 198 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~ 198 (457)
++||.||||||||||.++|.+++ ..|.+.+.+.+. ++..++..+........++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS--------------------YYKDLSHEELEERKNNNYDHPDA 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc--------------------cccccccccHHHhccCCCCCCCc
Confidence 58999999999999999999998 334444433321 11111221211111111111111
Q ss_pred HHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHH
Q psy10858 199 IWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV 257 (457)
Q Consensus 199 ~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~ 257 (457)
...+...+.+..+... ..+.+..++|.|++++..+ .++.|+++|+|+|+.+.++..
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 1112233344444442 2566778999999876655 578899999999999998743
No 457
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.95 E-value=7.1e-10 Score=117.06 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=71.0
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---EEcCccCCCCc------hhhhcCcEEEEcCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---WVLGGHPASIY------HKTAGSKVGYMPQEL 174 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---~i~G~~~~~~~------~~~~r~~IGyvpQ~~ 174 (457)
..+++++ |+|.+|++++|+|+||||||||+++|+|+.+++.+.+ -..|.++.... ....+..++|++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 6799999 9999999999999999999999999999999886433 33333332111 012345799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcC
Q psy10858 175 AMFGELTIKETLNFFGMIYG 194 (457)
Q Consensus 175 ~L~~~lTV~EnL~~~~~l~g 194 (457)
+.+..+++.+++.+.+.+++
T Consensus 222 s~~~rl~a~e~a~~iAEyfr 241 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYR 241 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhh
Confidence 99999999999988777653
No 458
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.93 E-value=3.5e-10 Score=108.75 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=81.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH--
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF-- 188 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~-- 188 (457)
-+++|+++.|.|++|+|||||...++ ++ .+..+-+++....... ......+.+|+.+|+......+.+.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 58999999999999999999988654 44 4455567775532211 101112345555554322222222221100
Q ss_pred --hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858 189 --FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266 (457)
Q Consensus 189 --~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~ 266 (457)
.....+.+.++...++.++.+..+.. ..++++-.+..+++|||. ..++.++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~vvIDsl~~l~~~~~~-----~~r~~~~~l~~ 150 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYG------------------HARLVIDSMSAFWLDKPA-----MARKYSYYLKR 150 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccC------------------ceEEEecCchhhhccChH-----HHHHHHHHHHH
Confidence 00001222233333333333222110 023334444444445542 23455566666
Q ss_pred HHHhCCcEEEEEcCChh--------HHhc-cCeEEEEe
Q psy10858 267 VFVGKGRTVIMTTQYIE--------EAND-ASEVAFLY 295 (457)
Q Consensus 267 ~~~~~g~TIIisTH~~~--------ea~~-~dri~im~ 295 (457)
.+++.|+|+|+++|... .++. ||.|+.|+
T Consensus 151 ~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 151 VLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 66778999999999654 1333 67777776
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=3.5e-08 Score=83.68 Aligned_cols=118 Identities=27% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG 194 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g 194 (457)
+|..+.|.||+|+||||+++.|+..+.... +-+++............ ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ--LL---------------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHH--HH----------------------------
Confidence 467899999999999999999999987654 44555443221111000 00
Q ss_pred CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH------HHHHH
Q psy10858 195 MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD------LLQVF 268 (457)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~------~i~~~ 268 (457)
............+++..+..+++|--..|.++++||+..-.+......... .....
T Consensus 51 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (148)
T smart00382 51 ------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK 112 (148)
T ss_pred ------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHH
Confidence 000122345678888888888888888899999999999999888877654 22233
Q ss_pred HhCCcEEEEEcCC
Q psy10858 269 VGKGRTVIMTTQY 281 (457)
Q Consensus 269 ~~~g~TIIisTH~ 281 (457)
...+..+|.++|.
T Consensus 113 ~~~~~~~i~~~~~ 125 (148)
T smart00382 113 SEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEEeCC
Confidence 3457888999884
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.89 E-value=1.7e-08 Score=107.16 Aligned_cols=179 Identities=18% Similarity=0.166 Sum_probs=110.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch--------hhhcCcEEEEcCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--------KTAGSKVGYMPQELA 175 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~--------~~~r~~IGyvpQ~~~ 175 (457)
..+++++ |++.+|+.++|+|+||+|||||+++|+|...++.|.+...|..-.+... ....+-+-++.+...
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 6799999 9999999999999999999999999999999999987776654322110 011122333333221
Q ss_pred CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC--CCCC
Q psy10858 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP--CVGV 253 (457)
Q Consensus 176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP--TsGL 253 (457)
+..+... +... .-.+.+.....|-..+ -...+|+- .|+|+-- ==+.+.|| +.|.
T Consensus 230 -----~p~~r~~--~~~~-------a~t~AE~frd~G~~Vl-l~~DslTr-------~A~A~RE--isl~~ge~P~~~Gy 285 (440)
T TIGR01026 230 -----SPLLRLK--GAYV-------ATAIAEYFRDQGKDVL-LLMDSVTR-------FAMAQRE--IGLAAGEPPATKGY 285 (440)
T ss_pred -----CHHHHHH--HHHH-------HHHHHHHHHHCCCCEE-EEEeChHH-------HHHHHHH--HHHhcCCCCccccc
Confidence 1211111 0000 0111122211222110 01122321 2332210 00445675 4599
Q ss_pred CHHHHHHHHHHHHHHHhCCc-------EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858 254 DPLVRKRMWDLLQVFVGKGR-------TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 254 Dp~~r~~i~~~i~~~~~~g~-------TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l 308 (457)
||.....++++++.....+. ||++.+||+.+ ..+|++..+.+|+|+.+...++.
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecchhhC
Confidence 99999999999888766677 89999999832 24799999999999998877654
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.84 E-value=7.2e-11 Score=126.56 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAI--VGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L--~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
-+++|.++.|.|++|||||||...+ .|.....+.-+++....... +.....+.+|+-.++..--. ++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~-~l~~~~~~~G~~~~~~~~~g------~l~~-- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQ-DIIKNARSFGWDLQKLVDEG------KLFI-- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHH-HHHHHHHHcCCCHHHHhhcC------ceEE--
Confidence 4789999999999999999999865 56665556666664432211 11111234555444221000 0000
Q ss_pred hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHH--HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10858 191 MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFT--IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267 (457)
Q Consensus 191 ~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA--~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~ 267 (457)
...... .....+++.+++.. .++...++|+|++|||.|+ .+|...|+.+ +..++.++++++.
T Consensus 88 --~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~ 152 (484)
T TIGR02655 88 --LDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVAR 152 (484)
T ss_pred --EecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHH
Confidence 000000 00011222333322 4566788999999999999 6666665544 5788899999888
Q ss_pred HHhCCcEEEEEcCChhH--------H-hc-cCeEEEEe
Q psy10858 268 FVGKGRTVIMTTQYIEE--------A-ND-ASEVAFLY 295 (457)
Q Consensus 268 ~~~~g~TIIisTH~~~e--------a-~~-~dri~im~ 295 (457)
+++.|+|+|+|||++++ + +. ||.|++|+
T Consensus 153 L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 153 LKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 88889999999999865 2 33 79999887
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=4.1e-09 Score=109.36 Aligned_cols=63 Identities=24% Similarity=0.425 Sum_probs=57.0
Q ss_pred CCCChhHHHHHHHHHHhhc---------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858 221 KYLSGGQKRRLSFTIAILH---------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl~---------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~ 286 (457)
..+|.||||++.||.+|+. +|+|||||||+++||+..++.+++.+... |.+||+|||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999997642 779999999987653
No 463
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=7e-09 Score=109.84 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=71.4
Q ss_pred ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC---ccCCCCch--
Q psy10858 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYH-- 160 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G---~~~~~~~~-- 160 (457)
....++.+++++.|..+ ..+++.++ +|.+||.++|+|+||||||||+++|+|+.+|+.|.|.+.| .++.....
T Consensus 136 ~p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 136 APPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 34679999999999754 78999996 9999999999999999999999999999999999998865 44332111
Q ss_pred --hhhcCcEEEEcCCCC
Q psy10858 161 --KTAGSKVGYMPQELA 175 (457)
Q Consensus 161 --~~~r~~IGyvpQ~~~ 175 (457)
...++.|+|++|.+.
T Consensus 214 l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 214 LADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhhCCeEEEEEcCCC
Confidence 123467999999764
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.80 E-value=5.6e-09 Score=98.01 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=60.4
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC--CCCCCCCHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL--AMFGELTIKE 184 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~--~L~~~lTV~E 184 (457)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..++++.|.. ..++..++.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCHHH
Confidence 3445677899999999999999999999999999999999999966321111 1124566666544 4566788888
Q ss_pred HHHHhhh
Q psy10858 185 TLNFFGM 191 (457)
Q Consensus 185 nL~~~~~ 191 (457)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 8765444
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.5e-08 Score=116.33 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=71.5
Q ss_pred CCCCCCChhHHHHHHHHHHhh------cC--CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858 218 RPVKYLSGGQKRRLSFTIAIL------HK--PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsLA~ALl------~~--P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d 289 (457)
+.+.+|||||+-.++||.||+ .+ -++|||||||..||+..++.+.+++..+...+.+|+||||+-+..+.+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 688999999999998888875 45 6999999999999999999999999988877999999999988888999
Q ss_pred eEEEEeC
Q psy10858 290 EVAFLYK 296 (457)
Q Consensus 290 ri~im~~ 296 (457)
.++.+..
T Consensus 891 ~~i~V~k 897 (908)
T COG0419 891 VRIRVKK 897 (908)
T ss_pred eEEEEEe
Confidence 9888764
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.77 E-value=2.4e-07 Score=105.91 Aligned_cols=55 Identities=29% Similarity=0.462 Sum_probs=50.0
Q ss_pred HHHHhhcCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858 233 FTIAILHKPQLIILDEPCVGV-DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGL-Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~ 287 (457)
+++++..+|+++++|||+.+| ||..++.+.+.++..++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577888999999999999999 7999999999988888889999999999998753
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.75 E-value=2.6e-07 Score=104.97 Aligned_cols=50 Identities=32% Similarity=0.493 Sum_probs=45.1
Q ss_pred HhhcCCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 236 AILHKPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
.+.++|.++++|||...|| |..++.+.+.++..++.|.+++++||+++++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3457899999999999999 9999999999888888899999999999875
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.69 E-value=4.6e-08 Score=95.16 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=38.2
Q ss_pred HhhcCCceEEEeCCCCC------CCHHHHHHHHHHHHHHH-hCCcEEEEEcCChh
Q psy10858 236 AILHKPQLIILDEPCVG------VDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIE 283 (457)
Q Consensus 236 ALl~~P~lLILDEPTsG------LDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ 283 (457)
+..++|+++|+| |+++ +|+.....+++.+..+. +.|.|||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345899999999 7754 79999999999866654 45999999999864
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=8.3e-08 Score=98.76 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=78.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l 192 (457)
..++.++.|.||+||||||+++.|.+.+. +..|.|...+.++... .......+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------------ 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------------ 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------------
Confidence 35688999999999999999999998765 4467776654332110 000011111100
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy10858 193 YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272 (457)
Q Consensus 193 ~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g 272 (457)
.+. .. .+ -.-++++||-.+|+++++||+. |+.+.....+ . ...|
T Consensus 177 ------------------vg~-----~~--~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---a-a~tG 220 (343)
T TIGR01420 177 ------------------VGL-----DT--LS----FANALRAALREDPDVILIGEMR---DLETVELALT---A-AETG 220 (343)
T ss_pred ------------------cCC-----CC--cC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---H-HHcC
Confidence 000 00 01 1124677888999999999997 8877654333 2 4569
Q ss_pred cEEEEEcCChhHHhccCeEEEE
Q psy10858 273 RTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 273 ~TIIisTH~~~ea~~~dri~im 294 (457)
.+|+.|.|-.+.+...+|+.-|
T Consensus 221 h~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 221 HLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred CcEEEEEcCCCHHHHHHHHHHh
Confidence 9999999997766666776544
No 470
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.66 E-value=3.8e-08 Score=104.30 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=78.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcC---ccCCCCchhh---hcCcEEEE-----c
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLG---GHPASIYHKT---AGSKVGYM-----P 171 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G---~~~~~~~~~~---~r~~IGyv-----p 171 (457)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+. +.|.|.+.| .++....... ...+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 99999999999999999999999999999854 456676645 3332211111 12345666 8
Q ss_pred CCCC--CCCCCCHHHHHHHhhhhcCCC---HHHHHHHHHHHHhHcCCC-----C-CCCCCCCCC
Q psy10858 172 QELA--MFGELTIKETLNFFGMIYGMD---ESIWLFQMRKYSHVLKLP-----N-LERPVKYLS 224 (457)
Q Consensus 172 Q~~~--L~~~lTV~EnL~~~~~l~g~~---~~~~~~~~~~ll~~l~L~-----~-~~~~~~~LS 224 (457)
|++. +.+.+ +...+.-+.+.+|.. ..+...++.++++.+++. . ...+++.||
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 8773 33333 444444333344433 245567778888888883 1 456777766
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.63 E-value=4.6e-08 Score=116.38 Aligned_cols=63 Identities=32% Similarity=0.489 Sum_probs=55.4
Q ss_pred CCCCCCCChhHHHHHH----HHHH--------hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q psy10858 217 ERPVKYLSGGQKRRLS----FTIA--------ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282 (457)
Q Consensus 217 ~~~~~~LSGGqkQRls----LA~A--------Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~ 282 (457)
++.++.||||||||++ +|+| +.++|++++|||||+|||+..+..+++++..+ |.++|||||.+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4567999999999996 5655 55899999999999999999999999998665 78999999986
No 472
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.63 E-value=2.1e-07 Score=106.34 Aligned_cols=137 Identities=21% Similarity=0.328 Sum_probs=87.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.-| .|||-..+ .+++
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a---~i~~ 649 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESA---RIGI 649 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------Cceeccce---Eecc
Confidence 4567788888 7788999999999999999998764321 1111 12222111 0111
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc--CCceEEEeCC---CCCCCHHH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH--KPQLIILDEP---CVGVDPLV 257 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~--~P~lLILDEP---TsGLDp~~ 257 (457)
.+.+ + .++| ..|.....+|-=+.....++.+|-+ ++.++||||| |+.+|..
T Consensus 650 ~d~I--~-------------------trig--a~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~- 705 (854)
T PRK05399 650 VDRI--F-------------------TRIG--ASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL- 705 (854)
T ss_pred cCee--e-------------------eccC--cccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH-
Confidence 1111 0 0111 1233445567777777777777655 8999999999 8889943
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCe
Q psy10858 258 RKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 258 r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dr 290 (457)
...|.+++.+.+. |.++|++||+.+....+++
T Consensus 706 -aia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 706 -SIAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred -HHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 3567777777665 5899999999665544443
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.62 E-value=1.4e-07 Score=110.99 Aligned_cols=143 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858 110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF 188 (457)
Q Consensus 110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~ 188 (457)
+++..++++++||+|++|+|||||++++.+.+ ...+|.+++++..+... .. .+-.++..-+ .+...+
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~-----~~--~~~~~~~~~~---~~~~~l-- 267 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS-----ME--IYSSANPDDY---NMKLHL-- 267 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc-----hh--hccccccccc---chhHHH--
Confidence 46778899999999999999999999996654 44589998865322110 00 0111111100 011001
Q ss_pred hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858 189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~ 268 (457)
..+.+.++++..++ .+..+ ++.|+| |.+++-+|+||+- |. ...|+.+...
T Consensus 268 -----------~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~---~~~l~~L~~~ 317 (1153)
T PLN03210 268 -----------QRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DD---QDVLDALAGQ 317 (1153)
T ss_pred -----------HHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CC---HHHHHHHHhh
Confidence 01122333333322 22222 566666 3466778888883 32 2345554332
Q ss_pred H---hCCcEEEEEcCChhHHhc--cCeEEEE
Q psy10858 269 V---GKGRTVIMTTQYIEEAND--ASEVAFL 294 (457)
Q Consensus 269 ~---~~g~TIIisTH~~~ea~~--~dri~im 294 (457)
. ..|.+||+|||+...+.. +|+++-+
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 2 358899999999998853 6777655
No 474
>PRK14079 recF recombination protein F; Provisional
Probab=98.60 E-value=8.9e-08 Score=98.83 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 221 KYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
..+|+|||+++++|..|+ .+|++++||||+++||+..+..+++.+... ..++|-+| +....+|++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t---~~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGT---EAPPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcC---CCCCCCceE
Confidence 458999999999999999 899999999999999999999999887542 12333333 233458999
Q ss_pred EEEeCCeEEEec
Q psy10858 292 AFLYKGRIIAQD 303 (457)
Q Consensus 292 ~im~~GkI~~~g 303 (457)
+.+.+|++.-+.
T Consensus 336 ~~~~~~~~~~~~ 347 (349)
T PRK14079 336 LRIEAGVFTPEA 347 (349)
T ss_pred EEEeccEecCCC
Confidence 999999875443
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.59 E-value=5.6e-08 Score=91.69 Aligned_cols=28 Identities=43% Similarity=0.598 Sum_probs=26.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|++++|+||+|||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.56 E-value=8.9e-08 Score=89.70 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGELTIKETLNFFGMIYGM 195 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~ 195 (457)
|++++|+||||||||||+++|++...+ .+.+.+..+...........+++++|++. ....-...+.-.+++..||.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 789999999999999999999999876 57776665543322223356788888742 11111222333445666777
Q ss_pred CH
Q psy10858 196 DE 197 (457)
Q Consensus 196 ~~ 197 (457)
+.
T Consensus 79 ~~ 80 (186)
T PRK10078 79 GI 80 (186)
T ss_pred cH
Confidence 64
No 477
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.55 E-value=1.6e-07 Score=83.06 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=73.9
Q ss_pred EEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCC-CCCC-----------------CC
Q psy10858 120 FVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE-LAMF-----------------GE 179 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~-~~L~-----------------~~ 179 (457)
++|+|++|||||||++.|+ +..++.+|++.. ....... .... .++.-+ +.+- ..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~-t~~~~~~---~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGK-TQLINFF---NVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCc-ceeEEEE---EccC--eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 6899999999999999999 667666665321 1000000 0000 111111 1110 00
Q ss_pred CCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHh-----hcCCceEEEeCCC
Q psy10858 180 LTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAI-----LHKPQLIILDEPC 250 (457)
Q Consensus 180 lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~AL-----l~~P~lLILDEPT 250 (457)
++..+++.....+... ........+.+.+...+.+. ...+...+|++++++.....+. ...|+++ |+
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 151 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF 151 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence 1122222211111111 11122233445555555542 2344667899988887666552 3456666 99
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy10858 251 VGVDPLVRKRMWDLLQV 267 (457)
Q Consensus 251 sGLDp~~r~~i~~~i~~ 267 (457)
|++|+...+++++.+..
T Consensus 152 Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGIDELRALIEK 168 (170)
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999988654
No 478
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.53 E-value=5.5e-08 Score=90.99 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~ 187 (457)
+||+++|+|+|||||||++++|+|++.+ ++++|.++.... ...+...|+.+|+...++..++..++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999887 578887664321 112224577777765555555555554
No 479
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.50 E-value=3.6e-06 Score=82.47 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=38.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCcEEEEEcCChhHHh
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVG-KGRTVIMTTQYIEEAN 286 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~-~g~TIIisTH~~~ea~ 286 (457)
.+..++|+||+..|=++.....+... ++.+.+ .+..+|++||+.+.++
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 45789999999999999999888665 787776 4889999999998764
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.49 E-value=1.2e-06 Score=99.60 Aligned_cols=50 Identities=28% Similarity=0.480 Sum_probs=44.3
Q ss_pred hhcCCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858 237 ILHKPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~ 286 (457)
+-.+|+++++|||+.+|| |..++.+.+.++..++.|.+++++||+++++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 346899999999999999 78889999998888888999999999998653
No 481
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.47 E-value=2.2e-07 Score=99.22 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=78.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE-EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE-IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM 191 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~-I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~ 191 (457)
-+.+|+++.|.|++|+|||||+..++.......+. +++.+++... .......++|+..++..++.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~-qi~~ra~rlg~~~~~l~~~~------------- 155 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ-QIKMRAIRLGLPEPNLYVLS------------- 155 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH-HHHHHHHHcCCChHHeEEcC-------------
Confidence 68999999999999999999999988766544344 3555433211 00000112222111100000
Q ss_pred hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCC---------CHHHHHHH-
Q psy10858 192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGV---------DPLVRKRM- 261 (457)
Q Consensus 192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGL---------Dp~~r~~i- 261 (457)
+.+- .+-... +--.+|+++++|.-++=. ++...+++
T Consensus 156 ------------------------------e~~~--~~I~~~--i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~ 201 (454)
T TIGR00416 156 ------------------------------ETNW--EQICAN--IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECT 201 (454)
T ss_pred ------------------------------CCCH--HHHHHH--HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHH
Confidence 0000 000111 112579999999765421 12223333
Q ss_pred HHHHHHHHhCCcEEEEEcCChhH--------Hhc-cCeEEEEeCCeE
Q psy10858 262 WDLLQVFVGKGRTVIMTTQYIEE--------AND-ASEVAFLYKGRI 299 (457)
Q Consensus 262 ~~~i~~~~~~g~TIIisTH~~~e--------a~~-~dri~im~~GkI 299 (457)
..+.+..++.|.|+|+++|...+ ++. +|.|++|+.++.
T Consensus 202 ~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~ 248 (454)
T TIGR00416 202 AELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRD 248 (454)
T ss_pred HHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCC
Confidence 33455567789999999997654 444 799999986653
No 482
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=1.1e-06 Score=97.30 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=71.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE--------EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGE--------IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~--------I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
...+.+.|+||||+|||||.++|.++.++..|. +.++|..+.. +... + .+-
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~-------------------i-~~~ 231 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE-------------------V-TNP 231 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH-------------------H-hHH
Confidence 345679999999999999999999998655443 4554432210 0000 0 010
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i 265 (457)
. .+...+.........++..++.. .+..+.++||| +|+||| +..||+..+..+.+.+
T Consensus 232 l-----lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 232 L-----LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred h-----cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 0 11111111223344466677754 57788899999 999999 8999999999999987
Q ss_pred HH
Q psy10858 266 QV 267 (457)
Q Consensus 266 ~~ 267 (457)
+.
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 64
No 483
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.42 E-value=2.1e-07 Score=93.93 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=55.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY 193 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~ 193 (457)
.++||.||||||||||+++|.+++. |++|.|.+.+.+....... .+...|++ |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 5899999999999999999999997 7889988766654332222 23346654 7777778888888887765543
No 484
>PRK08149 ATP synthase SpaL; Validated
Probab=98.41 E-value=4e-07 Score=96.26 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCccCCCCchh----hhcCcEEEEcCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---GEIWVLGGHPASIYHK----TAGSKVGYMPQEL 174 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---G~I~i~G~~~~~~~~~----~~r~~IGyvpQ~~ 174 (457)
..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|...|.++...... ...+++++++...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 6799999 9999999999999999999999999999999887 8898888876532211 1236788887654
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.37 E-value=4.1e-07 Score=88.11 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=51.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE----EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGE----IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~----I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
.+..++||.||||||||||+++|++++++++|. |.+++-.. . .......|++++.. .+..+++.+.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~-~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---D-NAVLDAHGLRPRKG-APETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---C-HHHHHhcccccccC-CCCCCCHHHHHHHHH
Confidence 457899999999999999999999999999998 44443221 1 11223468877643 345677777666554
Q ss_pred hhc
Q psy10858 191 MIY 193 (457)
Q Consensus 191 ~l~ 193 (457)
.++
T Consensus 106 ~l~ 108 (229)
T PRK09270 106 RLR 108 (229)
T ss_pred HHH
Confidence 443
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.37 E-value=4.2e-07 Score=85.20 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH--Hh-ccCeEEEEeCC
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE--AN-DASEVAFLYKG 297 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e--a~-~~dri~im~~G 297 (457)
|+-+|..||.++..+|+.+..+| +.+||..++.+++.+....+.|.+||+.+|.+.+ +. .||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 88999999999999999998887 8999999999999987766567899999999976 33 48999888654
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.36 E-value=2.6e-07 Score=94.34 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC------chhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI------YHKTAGSKVGYMPQELAMFGELTIKETLN 187 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~------~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~ 187 (457)
++|++++|+||||+||||++..|++.+.+..|+|.+.+.+.... .....+..+++++|.....+..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999998888999988776321 11233567899998765555445566554
No 488
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.33 E-value=6.4e-07 Score=90.04 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=60.6
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCC---C-CC
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAM---F-GE 179 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L---~-~~ 179 (457)
++.+...+. |++++++|+||+|||||++.|.|...++.|+|.. .|...+...........|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 444555555 5899999999999999999999999999999975 34333221111112336899999876 3 46
Q ss_pred CCHHHHHHHhhhh
Q psy10858 180 LTIKETLNFFGMI 192 (457)
Q Consensus 180 lTV~EnL~~~~~l 192 (457)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 8888888776554
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.33 E-value=5.9e-07 Score=95.10 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=58.4
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
.+.++.+.++..+..+ ..+++++ |+|.+||.++|+|+||+|||||+++|+|...++.|.+.+.|+.
T Consensus 127 p~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 127 PPAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CCceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 3468888888888532 7899999 9999999999999999999999999999999999988877754
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.32 E-value=2.1e-07 Score=88.62 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=27.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
++|+++||.|+||||||||++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999875
No 491
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.32 E-value=1.1e-06 Score=81.01 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=60.1
Q ss_pred hhH---hhhhhhcC---CCCCCCeEEEEeccCCcccccCCCCCCCCCCCCCcccCCcCchhhhHHHHhhccC-cccccCC
Q psy10858 360 FPV---AIFNATMG---SPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKD-TIKLKYF 432 (457)
Q Consensus 360 ~p~---~~~~~~i~---~d~~~l~~av~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~ 432 (457)
+|+ ++|+++++ .+++++++||||.|.+.... +. .-..|+++++.|+.+ .+... .
T Consensus 22 ~P~i~~~~~~~a~~~~~~~~~~lpvaVVd~D~s~~~~---~~---------------~~~~s~~l~~~l~~~~~~~~~-~ 82 (164)
T TIGR03061 22 IPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYD---GK---------------TLNAGDDLVKELKKNDDLDWH-F 82 (164)
T ss_pred HHHHHHHHHHHHHcCcccccCCCeEEEEECCCCCCcC---Cc---------------ccchHHHHHHHHhcCCCcceE-E
Confidence 476 66777764 78999999999999876320 00 013699999999877 22222 2
Q ss_pred CCHHHHHHHhhcCceEEEEEcCCCC
Q psy10858 433 PDEESAEEALKNESLSLLLEGSPDL 457 (457)
Q Consensus 433 ~~~~~~~~~~~~g~~~~~~~~~~~~ 457 (457)
.|.+||.+++++|++.++|.||+|+
T Consensus 83 ~~~~ea~~~l~~g~~~~~ivIP~~F 107 (164)
T TIGR03061 83 VSAKEAEKGLADGKYYMVITIPEDF 107 (164)
T ss_pred cCHHHHHHHhHcCcEEEEEEECcch
Confidence 3999999999999999999999985
No 492
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.30 E-value=1.3e-06 Score=89.51 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=51.4
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
-..++..|..+ ..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++.|.+.+-|.+
T Consensus 46 R~~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 46 RRPIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred hccceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 33444455432 6799999 9999999999999999999999999999999999988776654
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=2.6e-06 Score=73.11 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEcCChh
Q psy10858 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-----KGRTVIMTTQYIE 283 (457)
Q Consensus 228 kQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-----~g~TIIisTH~~~ 283 (457)
.+......+...++.++++||.-.. ++.....+.+.+..... .+..||++|+...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999998765 66667777777666532 5788999998765
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.29 E-value=3.3e-07 Score=84.95 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=44.1
Q ss_pred HHHHHhHcCCCC--CCCCCCCCChhHHHHHH--HHHHhhc-CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy10858 204 MRKYSHVLKLPN--LERPVKYLSGGQKRRLS--FTIAILH-KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271 (457)
Q Consensus 204 ~~~ll~~l~L~~--~~~~~~~LSGGqkQRls--LA~ALl~-~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~ 271 (457)
+.++++..+++. .-.++..+|+|++|++. ++.++-. +++++ |+|++|+...+.+++.+..+.++
T Consensus 127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 344455556542 34467779999999987 5555543 34443 99999999999999997665544
No 495
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.27 E-value=6.4e-07 Score=96.64 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=57.3
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
..|+++.||. ..+++++++.+..|+.++|+||||+|||||+++|.|+++|.+|++.+.+..+
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4588999988 7899999999999999999999999999999999999999999999877554
No 496
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.25 E-value=1.6e-06 Score=91.79 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=60.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch------hhhcCcEEEEcCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH------KTAGSKVGYMPQELAMF 177 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~------~~~r~~IGyvpQ~~~L~ 177 (457)
..+++++ |++.+|+.++|+|+||+|||||+++|+|...++.|.+...|.+-..... .......+++.++.+.+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 6799999 9999999999999999999999999999999999999886654332210 00123467788888776
Q ss_pred CCCCHH
Q psy10858 178 GELTIK 183 (457)
Q Consensus 178 ~~lTV~ 183 (457)
+.++..
T Consensus 212 p~~~r~ 217 (422)
T TIGR02546 212 PSLERL 217 (422)
T ss_pred CHHHHH
Confidence 655433
No 497
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.5e-06 Score=90.02 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=62.1
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
++.+.-.+++|++++|+|+||+|||||+++|+|...++.|+|.+++..... ....+.+++++|...+++. .+..++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCC-Cchhhh
Confidence 566677788999999999999999999999999999999999997754321 2234679999999887753 455555
Q ss_pred HH
Q psy10858 187 NF 188 (457)
Q Consensus 187 ~~ 188 (457)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 44
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.21 E-value=4.2e-06 Score=87.26 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW 149 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~ 149 (457)
-+.+|+++.|.|++|+|||||+..++.......|.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~Vl 114 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVL 114 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5899999999999999999999999887765545553
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=3.4e-06 Score=87.92 Aligned_cols=72 Identities=28% Similarity=0.413 Sum_probs=54.0
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..++++.++.+++|++++|+||||+|||||+..|++......| ..+|+++..+.. .....
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----------------~~~V~lit~D~~---R~ga~ 183 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG-----------------ASKVALLTTDSY---RIGGH 183 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CCeEEEEecccc---cccHH
Confidence 4567888899999999999999999999999999986521111 135788876554 23677
Q ss_pred HHHHHhhhhcCC
Q psy10858 184 ETLNFFGMIYGM 195 (457)
Q Consensus 184 EnL~~~~~l~g~ 195 (457)
|.|..++...+.
T Consensus 184 EqL~~~a~~~gv 195 (374)
T PRK14722 184 EQLRIFGKILGV 195 (374)
T ss_pred HHHHHHHHHcCC
Confidence 888877766654
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.3e-06 Score=92.33 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=44.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY 193 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~ 193 (457)
+++|++++|+||||+|||||++.|+|...-.. | ...+|++..+..- ....|.+.+++.+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~------~-----------~~~v~~i~~d~~r---igalEQL~~~a~il 247 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRH------G-----------ADKVALLTTDSYR---IGGHEQLRIYGKLL 247 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhc------C-----------CCeEEEEecCCcc---hhHHHHHHHHHHHc
Confidence 47899999999999999999999999531100 0 1235666555422 35677788888877
Q ss_pred CCCH
Q psy10858 194 GMDE 197 (457)
Q Consensus 194 g~~~ 197 (457)
|++.
T Consensus 248 Gvp~ 251 (420)
T PRK14721 248 GVSV 251 (420)
T ss_pred CCce
Confidence 7653
Done!