Query psy10858
Match_columns 457
No_of_seqs 530 out of 1964
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:14:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.2E-57 7.6E-62 465.5 31.3 229 86-314 21-257 (366)
2 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-57 1.1E-61 443.8 30.1 235 88-325 14-250 (256)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 3.2E-57 1.1E-61 463.5 28.9 224 88-313 3-231 (359)
4 2olj_A Amino acid ABC transpor 100.0 1E-56 3.6E-61 441.8 30.1 223 88-312 23-250 (263)
5 3rlf_A Maltose/maltodextrin im 100.0 9.5E-57 3.3E-61 463.1 30.0 221 89-313 3-226 (381)
6 3gfo_A Cobalt import ATP-bindi 100.0 4.1E-57 1.4E-61 447.5 25.3 224 87-311 5-234 (275)
7 1b0u_A Histidine permease; ABC 100.0 1.3E-56 4.5E-61 440.2 27.9 223 88-312 5-244 (262)
8 2pcj_A ABC transporter, lipopr 100.0 2.2E-56 7.5E-61 428.8 28.6 215 88-304 3-222 (224)
9 3tif_A Uncharacterized ABC tra 100.0 1.3E-56 4.4E-61 433.5 26.6 221 89-309 1-233 (235)
10 1z47_A CYSA, putative ABC-tran 100.0 6.2E-56 2.1E-60 453.6 28.4 224 86-313 11-238 (355)
11 4g1u_C Hemin import ATP-bindin 100.0 4.9E-56 1.7E-60 437.4 26.0 227 88-321 10-245 (266)
12 1ji0_A ABC transporter; ATP bi 100.0 9.3E-56 3.2E-60 428.5 27.3 220 88-310 5-228 (240)
13 2yyz_A Sugar ABC transporter, 100.0 7.2E-56 2.5E-60 453.8 27.9 221 89-313 3-226 (359)
14 2it1_A 362AA long hypothetical 100.0 1.2E-55 4.1E-60 452.6 29.5 221 89-313 3-226 (362)
15 1g6h_A High-affinity branched- 100.0 4E-56 1.4E-60 435.2 24.2 218 88-307 6-239 (257)
16 1oxx_K GLCV, glucose, ABC tran 100.0 6.7E-56 2.3E-60 453.1 25.9 223 89-313 3-233 (353)
17 1g29_1 MALK, maltose transport 100.0 1.8E-55 6.2E-60 452.8 28.8 221 89-313 3-232 (372)
18 1v43_A Sugar-binding transport 100.0 2.1E-55 7.3E-60 452.2 27.9 221 89-313 11-234 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 4.3E-55 1.5E-59 446.4 27.4 217 89-313 1-220 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 8.9E-55 3E-59 422.5 23.6 215 89-312 1-218 (240)
21 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-54 5E-59 429.8 22.6 230 87-321 19-260 (279)
22 2yz2_A Putative ABC transporte 100.0 3.6E-54 1.2E-58 423.5 24.6 219 89-311 2-228 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 4.7E-53 1.6E-57 411.9 24.2 217 89-307 3-230 (250)
24 2zu0_C Probable ATP-dependent 100.0 1E-52 3.5E-57 413.6 26.5 221 87-309 18-253 (267)
25 2ff7_A Alpha-hemolysin translo 100.0 1.1E-52 3.8E-57 409.0 25.3 213 89-311 7-233 (247)
26 2nq2_C Hypothetical ABC transp 100.0 2.3E-52 7.9E-57 408.3 27.5 207 88-310 3-217 (253)
27 2ixe_A Antigen peptide transpo 100.0 5.4E-53 1.9E-57 416.6 23.1 222 88-311 15-246 (271)
28 1mv5_A LMRA, multidrug resista 100.0 9.1E-53 3.1E-57 408.0 17.1 214 89-311 1-227 (243)
29 3nh6_A ATP-binding cassette SU 100.0 7.8E-52 2.7E-56 415.6 24.4 219 88-311 52-278 (306)
30 2qi9_C Vitamin B12 import ATP- 100.0 4.8E-52 1.7E-56 405.5 22.0 211 88-310 3-222 (249)
31 2ghi_A Transport protein; mult 100.0 4.8E-51 1.6E-55 400.3 24.0 215 88-311 16-243 (260)
32 3gd7_A Fusion complex of cysti 100.0 5.1E-51 1.7E-55 422.0 19.9 216 88-313 18-245 (390)
33 1sgw_A Putative ABC transporte 100.0 3.2E-51 1.1E-55 391.5 17.0 202 87-299 8-210 (214)
34 2pjz_A Hypothetical protein ST 100.0 1.2E-50 4.1E-55 398.7 21.3 209 89-311 1-216 (263)
35 2pze_A Cystic fibrosis transme 100.0 5.6E-50 1.9E-54 385.4 22.3 202 88-311 5-219 (229)
36 2cbz_A Multidrug resistance-as 100.0 6E-50 2E-54 387.3 20.9 204 89-311 3-218 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 2.6E-48 9E-53 420.1 23.9 229 88-322 340-576 (587)
38 3b5x_A Lipid A export ATP-bind 100.0 3.2E-48 1.1E-52 418.6 23.3 217 88-311 340-568 (582)
39 4a82_A Cystic fibrosis transme 100.0 6.3E-48 2.1E-52 416.2 24.7 216 88-311 338-565 (578)
40 3b60_A Lipid A export ATP-bind 100.0 1.4E-47 4.8E-52 413.6 27.1 217 88-311 340-568 (582)
41 2yl4_A ATP-binding cassette SU 100.0 1.2E-47 4.2E-52 415.0 25.5 215 90-310 342-570 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 1.9E-47 6.7E-52 414.0 20.5 215 88-311 353-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.3E-46 4.3E-51 375.0 18.2 197 87-310 38-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.8E-44 9.6E-49 419.3 21.6 218 88-311 1075-1305(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 1.9E-43 6.6E-48 411.3 22.9 223 88-312 1029-1260(1284)
46 3g5u_A MCG1178, multidrug resi 100.0 4.6E-43 1.6E-47 408.2 24.2 220 88-311 386-614 (1284)
47 3bk7_A ABC transporter ATP-bin 100.0 6.7E-43 2.3E-47 379.5 22.8 203 87-310 355-563 (607)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 7E-43 2.4E-47 374.5 21.0 204 87-310 285-493 (538)
49 4f4c_A Multidrug resistance pr 100.0 2.2E-42 7.6E-47 403.3 26.5 219 88-312 414-643 (1321)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.8E-42 9.7E-47 369.9 20.4 206 87-310 267-477 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2E-40 6.9E-45 360.0 19.2 201 93-311 350-560 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 5E-41 1.7E-45 364.8 12.2 197 89-297 83-304 (607)
53 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-40 9.4E-45 362.0 17.5 212 104-322 31-308 (670)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 8.3E-41 2.8E-45 358.4 12.2 196 90-297 21-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 1E-38 3.5E-43 360.3 23.7 196 89-310 435-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.9E-39 6.5E-44 366.3 16.4 204 87-304 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 5.7E-38 1.9E-42 343.6 19.1 201 104-311 335-641 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 2.4E-37 8.3E-42 335.8 12.5 197 94-299 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-36 8E-41 324.0 11.5 194 93-298 3-214 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 2.4E-35 8.2E-40 331.2 18.9 211 88-311 628-943 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 2.2E-35 7.4E-40 329.8 17.3 212 87-311 500-828 (842)
62 3pih_A Uvrabc system protein A 100.0 6.1E-34 2.1E-38 320.5 25.9 211 104-322 597-912 (916)
63 2ygr_A Uvrabc system protein A 100.0 1.9E-34 6.6E-39 324.8 18.4 221 88-323 646-971 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 9.8E-38 3.3E-42 329.0 -15.8 196 87-309 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 6.8E-33 2.3E-37 284.6 19.3 197 104-303 48-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 4.8E-30 1.7E-34 262.5 14.9 85 217-301 274-364 (365)
67 3b85_A Phosphate starvation-in 100.0 1.5E-33 5.1E-38 267.9 -13.9 151 97-287 8-163 (208)
68 4gp7_A Metallophosphoesterase; 100.0 1.9E-30 6.4E-35 237.4 3.3 151 109-291 1-168 (171)
69 1e69_A Chromosome segregation 100.0 4E-29 1.4E-33 250.6 12.8 189 109-299 17-301 (322)
70 1znw_A Guanylate kinase, GMP k 99.9 6.2E-32 2.1E-36 253.6 -15.3 175 104-295 9-202 (207)
71 1tq4_A IIGP1, interferon-induc 99.9 4.9E-31 1.7E-35 274.4 -12.7 175 104-298 36-255 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 1.5E-28 5.1E-33 227.7 0.9 147 119-301 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 6.9E-31 2.4E-35 263.4 -21.6 162 89-308 101-264 (305)
74 2dpy_A FLII, flagellum-specifi 99.9 1.9E-29 6.5E-34 264.3 -12.5 198 87-310 129-344 (438)
75 3b9q_A Chloroplast SRP recepto 99.9 6.2E-28 2.1E-32 241.4 -1.9 184 95-299 80-284 (302)
76 1z6g_A Guanylate kinase; struc 99.9 1.8E-29 6.2E-34 239.9 -20.3 177 104-291 10-204 (218)
77 2og2_A Putative signal recogni 99.9 2.3E-26 7.8E-31 235.4 -0.2 174 108-299 148-341 (359)
78 2obl_A ESCN; ATPase, hydrolase 99.9 5.4E-26 1.9E-30 231.5 0.3 197 87-310 43-255 (347)
79 3aez_A Pantothenate kinase; tr 99.9 2.2E-28 7.4E-33 245.7 -18.6 190 88-311 42-256 (312)
80 2o5v_A DNA replication and rep 99.9 5.1E-24 1.7E-28 218.0 13.4 86 217-308 259-354 (359)
81 3sop_A Neuronal-specific septi 99.9 7.7E-27 2.6E-31 229.8 -8.1 150 119-285 4-153 (270)
82 3qkt_A DNA double-strand break 99.9 3.8E-23 1.3E-27 208.7 17.7 79 217-295 243-327 (339)
83 2o8b_B DNA mismatch repair pro 99.9 3.8E-25 1.3E-29 252.2 3.4 171 87-306 748-938 (1022)
84 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.4E-25 5E-30 226.6 -0.1 133 106-299 160-292 (330)
85 1cr0_A DNA primase/helicase; R 99.9 7.2E-25 2.5E-29 215.7 2.2 183 104-299 22-237 (296)
86 1tf7_A KAIC; homohexamer, hexa 99.9 3E-27 1E-31 251.9 -16.0 182 88-298 11-211 (525)
87 1tf7_A KAIC; homohexamer, hexa 99.9 4.9E-24 1.7E-28 227.2 6.0 153 111-298 275-444 (525)
88 3pih_A Uvrabc system protein A 99.9 8.3E-24 2.8E-28 238.3 7.7 169 132-322 383-571 (916)
89 2jeo_A Uridine-cytidine kinase 99.9 5.7E-25 1.9E-29 211.5 -2.0 173 104-311 12-188 (245)
90 4ad8_A DNA repair protein RECN 99.9 6.9E-23 2.4E-27 217.9 13.8 79 218-297 392-473 (517)
91 2ehv_A Hypothetical protein PH 99.9 3.3E-25 1.1E-29 210.0 -4.2 182 89-296 6-207 (251)
92 3thx_A DNA mismatch repair pro 99.9 4.6E-23 1.6E-27 233.0 6.4 152 104-309 649-812 (934)
93 2r6f_A Excinuclease ABC subuni 99.9 8.1E-22 2.8E-26 221.9 15.6 132 178-311 450-601 (972)
94 2vf7_A UVRA2, excinuclease ABC 99.9 3.5E-22 1.2E-26 223.4 10.4 181 125-311 270-476 (842)
95 2ygr_A Uvrabc system protein A 99.9 1.2E-21 4E-26 221.1 12.5 135 175-311 464-618 (993)
96 2qnr_A Septin-2, protein NEDD5 99.8 6.5E-24 2.2E-28 211.6 -6.6 164 93-283 2-168 (301)
97 4a74_A DNA repair and recombin 99.8 8E-23 2.7E-27 191.2 1.1 148 113-298 21-201 (231)
98 1ewq_A DNA mismatch repair pro 99.8 2.3E-22 7.8E-27 223.4 2.8 160 88-304 549-718 (765)
99 1w1w_A Structural maintenance 99.8 2.2E-20 7.6E-25 193.9 16.1 78 218-295 329-410 (430)
100 2eyu_A Twitching motility prot 99.8 3.8E-22 1.3E-26 195.4 1.2 132 105-296 15-147 (261)
101 3szr_A Interferon-induced GTP- 99.8 1.2E-23 4E-28 228.5 -10.5 193 88-309 9-236 (608)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.8E-20 6.3E-25 169.1 11.0 84 216-299 51-142 (148)
103 3thx_B DNA mismatch repair pro 99.8 4.3E-21 1.5E-25 216.5 7.8 154 104-301 660-816 (918)
104 3asz_A Uridine kinase; cytidin 99.8 2.2E-23 7.5E-28 194.3 -11.0 146 113-283 2-162 (211)
105 2w0m_A SSO2452; RECA, SSPF, un 99.8 7.2E-22 2.4E-26 184.2 -1.7 170 104-298 9-193 (235)
106 1wb9_A DNA mismatch repair pro 99.8 4E-21 1.4E-25 214.4 2.4 156 104-305 595-753 (800)
107 1rj9_A FTSY, signal recognitio 99.8 6.9E-21 2.4E-25 190.6 2.6 154 116-285 101-261 (304)
108 1s96_A Guanylate kinase, GMP k 99.8 1.2E-21 4E-26 187.3 -4.0 148 109-311 8-161 (219)
109 2i3b_A HCR-ntpase, human cance 99.8 1E-21 3.5E-26 183.7 -6.7 158 117-303 1-169 (189)
110 1pzn_A RAD51, DNA repair and r 99.8 1.2E-20 4.2E-25 191.8 -0.9 164 105-305 118-310 (349)
111 1pui_A ENGB, probable GTP-bind 99.8 1.1E-21 3.7E-26 181.2 -8.9 171 89-274 3-202 (210)
112 3jvv_A Twitching mobility prot 99.8 5.4E-20 1.8E-24 188.0 2.2 147 93-297 92-246 (356)
113 2bdt_A BH3686; alpha-beta prot 99.8 1.6E-23 5.3E-28 192.4 -23.0 172 117-309 2-183 (189)
114 2qag_C Septin-7; cell cycle, c 99.8 1.8E-20 6.2E-25 195.3 -3.0 165 88-283 10-178 (418)
115 1nlf_A Regulatory protein REPA 99.7 2.5E-18 8.6E-23 168.0 9.9 153 113-286 26-185 (279)
116 1lw7_A Transcriptional regulat 99.7 2.3E-22 7.8E-27 204.6 -24.9 177 107-310 158-355 (365)
117 2qm8_A GTPase/ATPase; G protei 99.7 3.2E-21 1.1E-25 195.2 -17.7 175 89-269 29-259 (337)
118 2qag_B Septin-6, protein NEDD5 99.7 5.2E-19 1.8E-23 184.6 -3.3 179 88-281 15-218 (427)
119 1zp6_A Hypothetical protein AT 99.7 4.5E-20 1.5E-24 168.7 -10.8 151 113-279 5-158 (191)
120 2bbw_A Adenylate kinase 4, AK4 99.7 3.5E-20 1.2E-24 177.7 -12.9 143 116-271 26-199 (246)
121 1n0w_A DNA repair protein RAD5 99.7 1.7E-17 5.7E-22 156.4 3.9 146 113-297 20-209 (243)
122 3kta_B Chromosome segregation 99.7 2.6E-16 8.9E-21 145.4 11.2 83 216-299 58-146 (173)
123 2gza_A Type IV secretion syste 99.7 3.8E-18 1.3E-22 174.1 -2.0 154 91-298 137-303 (361)
124 1htw_A HI0065; nucleotide-bind 99.7 4.3E-19 1.5E-23 161.5 -8.1 92 90-190 8-99 (158)
125 2ewv_A Twitching motility prot 99.7 1.2E-17 4E-22 171.3 1.2 129 106-294 127-256 (372)
126 2cvh_A DNA repair and recombin 99.6 1.5E-15 5.1E-20 140.9 13.6 153 104-297 6-185 (220)
127 2yhs_A FTSY, cell division pro 99.6 8.9E-18 3E-22 177.9 -1.9 183 107-308 283-477 (503)
128 1nij_A Hypothetical protein YJ 99.6 8.4E-20 2.9E-24 183.0 -17.4 157 118-286 5-193 (318)
129 2rcn_A Probable GTPase ENGC; Y 99.6 1.4E-16 4.7E-21 163.0 4.2 121 106-237 205-328 (358)
130 3e70_C DPA, signal recognition 99.6 4.8E-16 1.6E-20 157.1 1.6 164 113-299 125-306 (328)
131 2oap_1 GSPE-2, type II secreti 99.5 9.3E-18 3.2E-22 178.9 -12.7 171 104-289 247-458 (511)
132 2yv5_A YJEQ protein; hydrolase 99.5 1.7E-16 5.9E-21 158.0 -2.9 122 112-235 160-300 (302)
133 3ec2_A DNA replication protein 99.5 5.6E-15 1.9E-19 134.4 7.3 113 111-284 32-145 (180)
134 3auy_A DNA double-strand break 99.5 2E-14 6.9E-19 146.5 12.0 77 218-295 276-359 (371)
135 1udx_A The GTP-binding protein 99.5 6.2E-16 2.1E-20 161.0 -1.0 155 107-280 147-306 (416)
136 1in4_A RUVB, holliday junction 99.5 5.1E-18 1.7E-22 170.6 -17.3 178 88-290 17-211 (334)
137 2kjq_A DNAA-related protein; s 99.5 1E-14 3.4E-19 130.9 5.9 92 106-281 30-124 (149)
138 1p9r_A General secretion pathw 99.5 8.3E-18 2.8E-22 175.2 -16.7 150 89-246 143-315 (418)
139 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 3E-17 1E-21 169.7 -12.8 169 113-305 16-208 (392)
140 1sxj_E Activator 1 40 kDa subu 99.5 3E-14 1E-18 142.1 8.6 137 120-285 39-177 (354)
141 2f1r_A Molybdopterin-guanine d 99.5 8.9E-17 3E-21 148.1 -9.4 110 118-244 3-125 (171)
142 1sq5_A Pantothenate kinase; P- 99.5 1.9E-16 6.5E-21 157.8 -10.4 140 88-255 36-199 (308)
143 3lda_A DNA repair protein RAD5 99.4 2E-14 6.8E-19 149.0 3.1 147 113-298 174-364 (400)
144 2x8a_A Nuclear valosin-contain 99.4 1.6E-17 5.6E-22 163.2 -20.3 144 104-265 33-190 (274)
145 1u0l_A Probable GTPase ENGC; p 99.4 1.5E-15 5E-20 151.0 -7.0 110 112-225 164-294 (301)
146 1odf_A YGR205W, hypothetical 3 99.4 3.9E-15 1.3E-19 147.8 -4.1 125 115-256 29-168 (290)
147 1lvg_A Guanylate kinase, GMP k 99.4 4.7E-17 1.6E-21 151.9 -18.8 153 114-295 1-172 (198)
148 3tr0_A Guanylate kinase, GMP k 99.3 1.2E-14 4.3E-19 133.7 -5.4 123 111-249 1-127 (205)
149 2px0_A Flagellar biosynthesis 99.3 9.5E-13 3.2E-17 131.0 7.5 140 115-302 103-247 (296)
150 3c8u_A Fructokinase; YP_612366 99.3 3.8E-15 1.3E-19 139.3 -9.6 152 114-311 19-182 (208)
151 3lnc_A Guanylate kinase, GMP k 99.3 2.3E-16 8E-21 149.5 -20.1 179 104-292 14-206 (231)
152 1t9h_A YLOQ, probable GTPase E 99.3 3.1E-14 1.1E-18 142.7 -6.0 117 112-230 168-303 (307)
153 2dr3_A UPF0273 protein PH0284; 99.3 3E-13 1E-17 127.3 0.1 170 105-296 10-196 (247)
154 1ls1_A Signal recognition part 99.3 4E-12 1.4E-16 126.3 7.5 132 90-268 77-209 (295)
155 1vma_A Cell division protein F 99.2 3.6E-12 1.2E-16 127.6 4.5 112 109-267 96-210 (306)
156 1iy2_A ATP-dependent metallopr 99.2 5.4E-16 1.8E-20 151.1 -23.6 141 89-249 49-194 (278)
157 1ixz_A ATP-dependent metallopr 99.2 4.1E-16 1.4E-20 149.4 -24.5 156 89-264 25-197 (254)
158 3euj_A Chromosome partition pr 99.2 1.2E-11 4E-16 131.0 4.3 52 104-156 17-68 (483)
159 2zr9_A Protein RECA, recombina 99.1 4E-11 1.4E-15 121.9 7.3 145 113-304 57-237 (349)
160 3k1j_A LON protease, ATP-depen 99.1 2.1E-12 7.2E-17 139.8 -6.9 168 90-267 35-227 (604)
161 2ius_A DNA translocase FTSK; n 99.0 4E-12 1.4E-16 135.5 -5.1 164 109-283 159-343 (512)
162 1qhl_A Protein (cell division 99.0 6.3E-12 2.1E-16 120.8 -3.8 76 88-173 8-91 (227)
163 2r6a_A DNAB helicase, replicat 99.0 3.9E-11 1.3E-15 125.5 1.8 178 104-299 190-401 (454)
164 1oix_A RAS-related protein RAB 98.9 8E-11 2.7E-15 107.8 -1.2 35 230-266 153-187 (191)
165 2f9l_A RAB11B, member RAS onco 98.8 1.3E-10 4.3E-15 106.6 -3.5 34 231-266 130-163 (199)
166 1svm_A Large T antigen; AAA+ f 98.8 1.3E-11 4.4E-16 126.9 -11.8 135 104-251 156-312 (377)
167 4eun_A Thermoresistant glucoki 98.7 4.1E-10 1.4E-14 104.2 -3.1 75 107-186 19-93 (200)
168 2dhr_A FTSH; AAA+ protein, hex 98.7 1.6E-11 5.4E-16 130.6 -14.8 156 89-264 40-212 (499)
169 1jjv_A Dephospho-COA kinase; P 98.7 3.7E-09 1.3E-13 97.6 2.8 125 119-295 4-131 (206)
170 3kta_A Chromosome segregation 98.7 5.8E-09 2E-13 94.3 2.9 120 108-232 18-152 (182)
171 2qtf_A Protein HFLX, GTP-bindi 98.7 2.2E-09 7.5E-14 109.6 -0.3 139 119-268 181-351 (364)
172 3hr8_A Protein RECA; alpha and 98.6 2.2E-08 7.5E-13 102.2 6.3 72 113-187 57-129 (356)
173 4e22_A Cytidylate kinase; P-lo 98.6 2.4E-09 8.1E-14 103.3 -1.2 67 105-174 18-96 (252)
174 2j41_A Guanylate kinase; GMP, 98.6 1.1E-08 3.8E-13 93.7 2.9 60 112-175 1-61 (207)
175 2xau_A PRE-mRNA-splicing facto 98.6 3.5E-08 1.2E-12 110.0 7.4 73 217-289 185-260 (773)
176 3nwj_A ATSK2; P loop, shikimat 98.6 2E-09 6.8E-14 104.7 -2.3 52 88-141 16-72 (250)
177 2ce7_A Cell division protein F 98.6 5.5E-08 1.9E-12 102.8 8.5 116 104-285 38-167 (476)
178 2e87_A Hypothetical protein PH 98.6 7E-08 2.4E-12 97.6 8.2 124 116-283 166-293 (357)
179 1zu4_A FTSY; GTPase, signal re 98.6 8.2E-09 2.8E-13 103.7 1.1 80 107-186 95-184 (320)
180 3uie_A Adenylyl-sulfate kinase 98.6 1.5E-09 5E-14 100.4 -4.2 60 93-155 3-64 (200)
181 3a00_A Guanylate kinase, GMP k 98.6 1.3E-08 4.6E-13 93.0 2.1 33 117-149 1-33 (186)
182 2dy1_A Elongation factor G; tr 98.5 1.5E-08 5E-13 111.2 1.3 134 111-284 3-138 (665)
183 2www_A Methylmalonic aciduria 98.5 1.2E-08 4E-13 103.5 0.1 42 115-156 72-113 (349)
184 3t34_A Dynamin-related protein 98.5 1.1E-07 3.7E-12 96.0 7.0 173 104-280 24-212 (360)
185 4a1f_A DNAB helicase, replicat 98.4 2.6E-07 8.9E-12 93.6 5.9 129 104-280 33-164 (338)
186 1fnn_A CDC6P, cell division co 98.4 1E-06 3.4E-11 87.9 9.9 46 239-285 124-172 (389)
187 1kgd_A CASK, peripheral plasma 98.3 2.4E-07 8.4E-12 84.2 2.4 36 115-150 3-39 (180)
188 2vp4_A Deoxynucleoside kinase; 98.2 3.4E-07 1.2E-11 86.6 2.5 41 111-155 14-54 (230)
189 3vaa_A Shikimate kinase, SK; s 98.2 5.3E-07 1.8E-11 83.1 3.3 38 104-141 12-49 (199)
190 1rz3_A Hypothetical protein rb 98.2 2.8E-07 9.7E-12 85.3 1.2 43 114-156 19-61 (201)
191 3kl4_A SRP54, signal recogniti 98.2 3.5E-06 1.2E-10 88.1 9.3 39 116-154 96-134 (433)
192 3tqc_A Pantothenate kinase; bi 98.2 4.4E-08 1.5E-12 98.6 -5.5 56 93-150 64-127 (321)
193 2p67_A LAO/AO transport system 98.1 2.4E-08 8.2E-13 100.6 -7.8 65 89-155 30-94 (341)
194 3cni_A Putative ABC type-2 tra 98.1 1.1E-06 3.7E-11 78.7 3.3 62 368-457 3-66 (156)
195 1sxj_C Activator 1 40 kDa subu 98.1 2E-09 6.9E-14 107.5 -16.4 55 94-150 23-79 (340)
196 3tau_A Guanylate kinase, GMP k 98.1 1.5E-06 5.2E-11 80.8 4.0 29 115-143 6-34 (208)
197 2ffh_A Protein (FFH); SRP54, s 98.1 4.7E-07 1.6E-11 94.4 0.4 60 92-157 79-138 (425)
198 2qby_A CDC6 homolog 1, cell di 98.1 1.2E-06 4E-11 86.8 3.1 30 115-144 43-72 (386)
199 1knq_A Gluconate kinase; ALFA/ 98.1 9.4E-07 3.2E-11 79.1 2.1 38 115-156 6-43 (175)
200 3m6a_A ATP-dependent protease 98.1 7.9E-08 2.7E-12 102.9 -6.2 81 90-173 84-164 (543)
201 3cr8_A Sulfate adenylyltranfer 98.0 9.6E-07 3.3E-11 94.9 1.3 43 113-155 365-409 (552)
202 3ney_A 55 kDa erythrocyte memb 98.0 1.8E-06 6E-11 81.2 2.9 32 111-142 13-44 (197)
203 1ega_A Protein (GTP-binding pr 98.0 2.3E-07 8E-12 91.8 -3.8 139 115-285 6-162 (301)
204 1cke_A CK, MSSA, protein (cyti 98.0 2.1E-07 7.2E-12 86.6 -4.1 59 116-174 4-74 (227)
205 2z4s_A Chromosomal replication 98.0 7.6E-06 2.6E-10 85.2 6.9 68 239-306 193-264 (440)
206 1v5w_A DMC1, meiotic recombina 98.0 2.8E-05 9.5E-10 78.3 10.9 138 113-283 118-275 (343)
207 2qt1_A Nicotinamide riboside k 98.0 4.2E-06 1.4E-10 77.1 4.0 33 110-142 14-46 (207)
208 3b9p_A CG5977-PA, isoform A; A 97.9 2.9E-05 9.8E-10 75.2 8.8 61 224-284 97-171 (297)
209 3bh0_A DNAB-like replicative h 97.9 2.4E-05 8.3E-10 77.7 8.2 132 104-281 55-190 (315)
210 3lxx_A GTPase IMAP family memb 97.8 5.7E-05 1.9E-09 71.1 9.9 42 239-280 111-154 (239)
211 2z43_A DNA repair and recombin 97.8 8.3E-06 2.8E-10 81.3 3.3 139 113-283 103-259 (324)
212 1kag_A SKI, shikimate kinase I 97.8 7.5E-06 2.6E-10 72.8 2.6 33 116-152 3-35 (173)
213 1ypw_A Transitional endoplasmi 97.7 1.9E-05 6.5E-10 88.3 5.5 32 112-143 233-264 (806)
214 1mky_A Probable GTP-binding pr 97.7 1.5E-05 5.2E-10 82.6 4.3 69 119-187 182-262 (439)
215 3cf0_A Transitional endoplasmi 97.7 5.9E-05 2E-09 74.1 8.2 30 112-141 44-73 (301)
216 2wji_A Ferrous iron transport 97.7 0.00013 4.6E-09 64.1 9.5 24 119-142 5-28 (165)
217 2pez_A Bifunctional 3'-phospho 97.7 1E-05 3.4E-10 72.8 1.4 39 115-154 3-43 (179)
218 1u94_A RECA protein, recombina 97.6 0.0001 3.6E-09 74.9 8.4 35 105-140 49-86 (356)
219 4eaq_A DTMP kinase, thymidylat 97.6 2.2E-05 7.6E-10 74.6 3.2 45 106-151 12-59 (229)
220 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.9E-05 1.3E-09 68.1 3.9 31 108-139 15-45 (149)
221 1lv7_A FTSH; alpha/beta domain 97.5 0.00031 1E-08 66.7 9.6 34 107-142 37-70 (257)
222 1m7g_A Adenylylsulfate kinase; 97.5 1.6E-05 5.6E-10 73.7 0.3 42 112-153 20-63 (211)
223 1j8m_F SRP54, signal recogniti 97.5 3.9E-06 1.3E-10 83.2 -4.1 60 91-155 76-136 (297)
224 3bos_A Putative DNA replicatio 97.5 6.2E-05 2.1E-09 69.3 3.9 27 116-142 51-77 (242)
225 1l8q_A Chromosomal replication 97.5 0.00028 9.5E-09 69.4 8.8 43 239-281 97-140 (324)
226 4fcw_A Chaperone protein CLPB; 97.4 4.4E-05 1.5E-09 74.1 2.5 31 118-148 48-78 (311)
227 2w58_A DNAI, primosome compone 97.4 8.5E-05 2.9E-09 67.8 4.2 25 118-142 55-79 (202)
228 2qag_A Septin-2, protein NEDD5 97.4 1.2E-05 4E-10 81.7 -2.0 57 88-152 16-72 (361)
229 1m2o_B GTP-binding protein SAR 97.4 0.00013 4.3E-09 66.1 4.6 35 105-140 12-46 (190)
230 3ice_A Transcription terminati 97.3 3.1E-05 1.1E-09 80.0 -0.0 53 88-141 132-198 (422)
231 3llm_A ATP-dependent RNA helic 97.3 5.4E-05 1.8E-09 71.4 1.4 120 114-264 73-201 (235)
232 3qks_A DNA double-strand break 97.3 0.00021 7.3E-09 66.4 5.4 30 108-138 15-44 (203)
233 1sxj_D Activator 1 41 kDa subu 97.3 1.7E-06 5.7E-11 85.4 -9.7 44 240-285 133-176 (353)
234 2gj8_A MNME, tRNA modification 97.3 0.00019 6.6E-09 63.9 4.7 28 115-142 2-29 (172)
235 2q6t_A DNAB replication FORK h 97.3 0.001 3.5E-08 69.0 10.7 131 104-280 187-318 (444)
236 3h4m_A Proteasome-activating n 97.3 0.00068 2.3E-08 64.9 8.7 53 233-285 103-169 (285)
237 2yvu_A Probable adenylyl-sulfa 97.3 7.5E-05 2.6E-09 67.5 1.6 39 112-150 8-46 (186)
238 1f6b_A SAR1; gtpases, N-termin 97.2 5E-05 1.7E-09 69.3 0.2 41 98-140 8-48 (198)
239 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.9E-09 65.9 2.9 32 109-140 2-33 (184)
240 3auy_A DNA double-strand break 97.2 0.00046 1.6E-08 69.8 6.7 44 89-138 2-46 (371)
241 2if2_A Dephospho-COA kinase; a 97.1 0.00018 6.1E-09 65.7 2.9 21 119-139 3-23 (204)
242 1njg_A DNA polymerase III subu 97.1 0.00016 5.5E-09 65.6 2.5 45 239-285 125-169 (250)
243 2v1u_A Cell division control p 97.1 0.00047 1.6E-08 68.1 5.8 28 115-142 42-69 (387)
244 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00023 8E-09 73.5 3.7 41 113-153 18-69 (396)
245 2qor_A Guanylate kinase; phosp 97.1 0.0002 7E-09 65.8 2.7 30 113-142 8-37 (204)
246 2wjg_A FEOB, ferrous iron tran 97.1 0.00033 1.1E-08 62.2 3.9 23 119-141 9-31 (188)
247 2r8r_A Sensor protein; KDPD, P 97.0 7.2E-05 2.5E-09 71.8 -1.2 48 233-280 77-125 (228)
248 3t61_A Gluconokinase; PSI-biol 97.0 0.00017 5.9E-09 65.9 1.2 34 117-154 18-51 (202)
249 2zej_A Dardarin, leucine-rich 96.9 0.00045 1.5E-08 61.8 3.0 25 119-143 4-28 (184)
250 3cm0_A Adenylate kinase; ATP-b 96.8 0.00049 1.7E-08 61.6 3.0 25 115-139 2-26 (186)
251 1xp8_A RECA protein, recombina 96.8 0.0017 5.9E-08 66.2 7.4 27 113-139 70-96 (366)
252 2i1q_A DNA repair and recombin 96.8 0.0046 1.6E-07 60.9 10.1 27 113-139 94-120 (322)
253 1np6_A Molybdopterin-guanine d 96.8 0.00045 1.5E-08 63.2 2.4 37 117-153 6-45 (174)
254 1ypw_A Transitional endoplasmi 96.8 0.00013 4.4E-09 81.6 -1.6 32 110-141 504-535 (806)
255 1q3t_A Cytidylate kinase; nucl 96.7 0.00069 2.3E-08 63.8 3.2 28 114-141 13-40 (236)
256 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00015 5.3E-09 73.8 -1.5 38 105-142 10-49 (359)
257 2p5t_B PEZT; postsegregational 96.7 0.00057 1.9E-08 65.3 2.4 40 113-154 28-67 (253)
258 4ag6_A VIRB4 ATPase, type IV s 96.6 0.00063 2.2E-08 69.0 2.4 47 239-285 261-310 (392)
259 3d8b_A Fidgetin-like protein 1 96.6 0.0095 3.2E-07 59.8 11.0 26 116-141 116-141 (357)
260 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.4E-08 57.6 3.2 23 119-141 3-25 (173)
261 3cmw_A Protein RECA, recombina 96.5 0.0031 1E-07 75.6 7.3 35 113-147 728-762 (1706)
262 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.015 5.2E-07 54.4 10.9 27 115-141 37-63 (262)
263 3n70_A Transport activator; si 96.5 0.0098 3.3E-07 51.6 8.8 28 116-143 23-50 (145)
264 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0048 1.7E-07 62.2 7.3 28 112-139 118-145 (331)
265 1gtv_A TMK, thymidylate kinase 96.4 0.00059 2E-08 62.3 0.3 30 119-148 2-31 (214)
266 1vht_A Dephospho-COA kinase; s 96.4 0.0017 5.9E-08 59.9 3.3 24 116-139 3-26 (218)
267 2b8t_A Thymidine kinase; deoxy 96.4 0.0031 1.1E-07 60.0 5.1 52 239-295 88-150 (223)
268 1qhx_A CPT, protein (chloramph 96.4 0.002 6.8E-08 57.1 3.5 27 116-142 2-28 (178)
269 1kht_A Adenylate kinase; phosp 96.3 0.0019 6.6E-08 57.5 3.4 26 116-141 2-27 (192)
270 3r20_A Cytidylate kinase; stru 96.3 0.0007 2.4E-08 64.9 0.5 26 116-141 8-33 (233)
271 2rhm_A Putative kinase; P-loop 96.3 0.0018 6E-08 58.0 3.1 27 115-141 3-29 (193)
272 3lw7_A Adenylate kinase relate 96.3 0.0019 6.5E-08 56.1 3.1 19 119-137 3-21 (179)
273 1q57_A DNA primase/helicase; d 96.3 0.025 8.6E-07 59.2 11.9 34 106-139 231-264 (503)
274 3dm5_A SRP54, signal recogniti 96.2 0.028 9.4E-07 58.8 11.9 35 116-150 99-133 (443)
275 3io5_A Recombination and repai 96.2 0.012 4.2E-07 59.2 8.8 27 114-141 26-53 (333)
276 1jal_A YCHF protein; nucleotid 96.2 0.0032 1.1E-07 64.2 4.5 36 117-152 2-48 (363)
277 3k53_A Ferrous iron transport 96.2 0.0021 7.2E-08 61.8 3.0 44 249-292 144-189 (271)
278 3bgw_A DNAB-like replicative h 96.2 0.011 3.7E-07 61.7 8.4 130 105-280 185-318 (444)
279 1uf9_A TT1252 protein; P-loop, 96.2 0.0024 8.1E-08 57.6 3.0 31 117-152 8-38 (203)
280 2v54_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 57.5 3.3 27 115-141 2-28 (204)
281 2jaq_A Deoxyguanosine kinase; 96.1 0.0027 9.3E-08 57.1 3.2 23 119-141 2-24 (205)
282 3ihw_A Centg3; RAS, centaurin, 96.1 0.0045 1.5E-07 55.5 4.4 27 120-146 23-54 (184)
283 1nn5_A Similar to deoxythymidy 96.1 0.0032 1.1E-07 57.3 3.4 27 114-140 6-32 (215)
284 2plr_A DTMP kinase, probable t 96.0 0.0038 1.3E-07 56.5 3.5 28 116-143 3-30 (213)
285 3trf_A Shikimate kinase, SK; a 96.0 0.0038 1.3E-07 55.7 3.4 26 116-141 4-29 (185)
286 2wwf_A Thymidilate kinase, put 96.0 0.0038 1.3E-07 56.7 3.4 26 115-140 8-33 (212)
287 3iij_A Coilin-interacting nucl 96.0 0.0033 1.1E-07 56.1 2.9 26 115-140 9-34 (180)
288 1ly1_A Polynucleotide kinase; 95.9 0.0038 1.3E-07 55.0 3.2 22 118-139 3-24 (181)
289 1ex7_A Guanylate kinase; subst 95.9 0.0034 1.2E-07 58.1 3.0 22 120-141 4-25 (186)
290 2ze6_A Isopentenyl transferase 95.9 0.0034 1.2E-07 60.2 3.0 23 119-141 3-25 (253)
291 2c95_A Adenylate kinase 1; tra 95.9 0.0042 1.4E-07 55.7 3.4 27 115-141 7-33 (196)
292 1tev_A UMP-CMP kinase; ploop, 95.9 0.0043 1.5E-07 55.2 3.4 25 116-140 2-26 (196)
293 1via_A Shikimate kinase; struc 95.9 0.0034 1.2E-07 55.8 2.7 23 119-141 6-28 (175)
294 3co5_A Putative two-component 95.8 0.011 3.9E-07 51.1 5.8 40 240-280 75-114 (143)
295 1gvn_B Zeta; postsegregational 95.8 0.0039 1.3E-07 61.0 2.9 36 115-152 31-66 (287)
296 3zvl_A Bifunctional polynucleo 95.8 0.046 1.6E-06 56.2 11.1 29 113-141 254-282 (416)
297 2vli_A Antibiotic resistance p 95.8 0.0036 1.2E-07 55.6 2.3 27 115-141 3-29 (183)
298 3cmu_A Protein RECA, recombina 95.7 0.022 7.4E-07 69.3 9.4 28 114-141 380-407 (2050)
299 3syl_A Protein CBBX; photosynt 95.7 0.054 1.8E-06 52.1 10.6 26 116-141 66-91 (309)
300 1nks_A Adenylate kinase; therm 95.7 0.0054 1.8E-07 54.5 3.2 24 119-142 3-26 (194)
301 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.08 2.7E-06 52.3 12.0 26 116-141 44-69 (322)
302 2z0h_A DTMP kinase, thymidylat 95.7 0.0055 1.9E-07 54.9 3.2 23 119-141 2-24 (197)
303 2ged_A SR-beta, signal recogni 95.6 0.005 1.7E-07 54.8 2.8 24 119-142 50-73 (193)
304 3ake_A Cytidylate kinase; CMP 95.6 0.0055 1.9E-07 55.4 2.9 23 119-141 4-26 (208)
305 2bwj_A Adenylate kinase 5; pho 95.6 0.0051 1.7E-07 55.2 2.6 28 114-141 9-36 (199)
306 3q72_A GTP-binding protein RAD 95.5 0.0055 1.9E-07 52.8 2.6 23 120-142 5-27 (166)
307 1xjc_A MOBB protein homolog; s 95.5 0.0062 2.1E-07 55.6 3.0 26 118-143 5-30 (169)
308 2nzj_A GTP-binding protein REM 95.5 0.0067 2.3E-07 52.6 3.1 22 120-141 7-28 (175)
309 3b1v_A Ferrous iron uptake tra 95.5 0.0067 2.3E-07 59.0 3.3 23 119-141 5-27 (272)
310 1fzq_A ADP-ribosylation factor 95.5 0.0056 1.9E-07 54.5 2.6 22 119-140 18-39 (181)
311 1aky_A Adenylate kinase; ATP:A 95.5 0.0078 2.7E-07 55.6 3.5 27 115-141 2-28 (220)
312 2erx_A GTP-binding protein DI- 95.5 0.0071 2.4E-07 52.0 3.1 21 120-140 6-26 (172)
313 2ce2_X GTPase HRAS; signaling 95.5 0.0062 2.1E-07 51.8 2.7 22 120-141 6-27 (166)
314 1zd8_A GTP:AMP phosphotransfer 95.5 0.0075 2.6E-07 56.1 3.4 27 115-141 5-31 (227)
315 1z2a_A RAS-related protein RAB 95.5 0.0064 2.2E-07 52.2 2.7 22 120-141 8-29 (168)
316 1ko7_A HPR kinase/phosphatase; 95.5 0.014 4.8E-07 58.4 5.5 35 104-139 132-166 (314)
317 3q85_A GTP-binding protein REM 95.4 0.0076 2.6E-07 52.0 3.0 23 120-142 5-27 (169)
318 1kao_A RAP2A; GTP-binding prot 95.4 0.0071 2.4E-07 51.6 2.8 22 120-141 6-27 (167)
319 1u8z_A RAS-related protein RAL 95.4 0.0071 2.4E-07 51.7 2.7 22 120-141 7-28 (168)
320 2dyk_A GTP-binding protein; GT 95.4 0.0072 2.5E-07 51.6 2.8 22 120-141 4-25 (161)
321 3tw8_B RAS-related protein RAB 95.4 0.007 2.4E-07 52.6 2.7 22 120-141 12-33 (181)
322 1z0j_A RAB-22, RAS-related pro 95.3 0.0076 2.6E-07 51.8 2.8 22 120-141 9-30 (170)
323 1svi_A GTP-binding protein YSX 95.3 0.0076 2.6E-07 53.5 2.8 23 119-141 25-47 (195)
324 3pqc_A Probable GTP-binding pr 95.3 0.0077 2.6E-07 53.2 2.8 23 119-141 25-47 (195)
325 2pbr_A DTMP kinase, thymidylat 95.3 0.0089 3E-07 53.2 3.2 23 119-141 2-24 (195)
326 1z08_A RAS-related protein RAB 95.3 0.0079 2.7E-07 51.8 2.8 22 120-141 9-30 (170)
327 2lkc_A Translation initiation 95.3 0.011 3.7E-07 51.5 3.6 26 116-141 7-32 (178)
328 1g16_A RAS-related protein SEC 95.3 0.0078 2.7E-07 51.8 2.7 22 120-141 6-27 (170)
329 2fn4_A P23, RAS-related protei 95.3 0.0079 2.7E-07 52.3 2.7 22 119-140 11-32 (181)
330 1c1y_A RAS-related protein RAP 95.3 0.008 2.7E-07 51.5 2.7 21 120-140 6-26 (167)
331 1ky3_A GTP-binding protein YPT 95.3 0.0081 2.8E-07 52.3 2.8 22 120-141 11-32 (182)
332 1ek0_A Protein (GTP-binding pr 95.3 0.0081 2.8E-07 51.6 2.7 22 120-141 6-27 (170)
333 3fb4_A Adenylate kinase; psych 95.3 0.0092 3.1E-07 54.7 3.2 22 119-140 2-23 (216)
334 1moz_A ARL1, ADP-ribosylation 95.3 0.0055 1.9E-07 53.8 1.6 22 118-139 19-40 (183)
335 2cdn_A Adenylate kinase; phosp 95.2 0.01 3.6E-07 53.8 3.5 27 115-141 18-44 (201)
336 2cxx_A Probable GTP-binding pr 95.2 0.0084 2.9E-07 52.8 2.8 22 120-141 4-25 (190)
337 1qf9_A UMP/CMP kinase, protein 95.2 0.01 3.4E-07 52.7 3.3 24 117-140 6-29 (194)
338 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.0085 2.9E-07 52.1 2.8 22 120-141 10-31 (177)
339 3cmw_A Protein RECA, recombina 95.2 0.033 1.1E-06 66.8 8.4 36 105-140 369-406 (1706)
340 1ukz_A Uridylate kinase; trans 95.2 0.01 3.4E-07 53.9 3.2 26 116-141 14-39 (203)
341 1zak_A Adenylate kinase; ATP:A 95.2 0.0087 3E-07 55.3 2.8 26 116-141 4-29 (222)
342 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.011 3.8E-07 56.6 3.5 26 115-140 2-27 (260)
343 1zuh_A Shikimate kinase; alpha 95.1 0.011 3.9E-07 51.9 3.3 24 117-140 7-30 (168)
344 1e6c_A Shikimate kinase; phosp 95.1 0.0091 3.1E-07 52.4 2.7 24 118-141 3-26 (173)
345 4dsu_A GTPase KRAS, isoform 2B 95.1 0.0095 3.3E-07 52.3 2.8 22 120-141 7-28 (189)
346 1r2q_A RAS-related protein RAB 95.1 0.0097 3.3E-07 51.1 2.7 21 120-140 9-29 (170)
347 3clv_A RAB5 protein, putative; 95.1 0.0098 3.3E-07 52.4 2.8 22 120-141 10-31 (208)
348 3dl0_A Adenylate kinase; phosp 95.1 0.011 3.8E-07 54.2 3.2 23 119-141 2-24 (216)
349 2pt5_A Shikimate kinase, SK; a 95.1 0.012 4.1E-07 51.5 3.2 23 119-141 2-24 (168)
350 3t1o_A Gliding protein MGLA; G 95.1 0.0099 3.4E-07 52.5 2.7 23 120-142 17-39 (198)
351 2hxs_A RAB-26, RAS-related pro 95.1 0.011 3.9E-07 51.4 3.0 22 120-141 9-30 (178)
352 3lxw_A GTPase IMAP family memb 95.1 0.01 3.6E-07 56.3 3.0 25 119-143 23-47 (247)
353 3bc1_A RAS-related protein RAB 95.1 0.01 3.4E-07 52.2 2.7 22 120-141 14-35 (195)
354 2oil_A CATX-8, RAS-related pro 95.0 0.01 3.5E-07 52.8 2.7 22 120-141 28-49 (193)
355 1upt_A ARL1, ADP-ribosylation 95.0 0.01 3.6E-07 51.1 2.7 22 119-140 9-30 (171)
356 3cmu_A Protein RECA, recombina 95.0 0.028 9.6E-07 68.3 7.1 89 363-451 1763-1858(2050)
357 1r8s_A ADP-ribosylation factor 95.0 0.011 3.8E-07 50.7 2.7 21 120-140 3-23 (164)
358 2y8e_A RAB-protein 6, GH09086P 94.9 0.011 3.8E-07 51.2 2.7 21 120-140 17-37 (179)
359 1z0f_A RAB14, member RAS oncog 94.9 0.012 4E-07 51.1 2.7 22 120-141 18-39 (179)
360 2a9k_A RAS-related protein RAL 94.9 0.012 4E-07 51.5 2.7 22 120-141 21-42 (187)
361 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.8E-07 52.7 2.6 23 118-140 3-25 (184)
362 2g6b_A RAS-related protein RAB 94.9 0.012 4E-07 51.3 2.7 22 120-141 13-34 (180)
363 3iby_A Ferrous iron transport 94.9 0.012 4.2E-07 56.4 3.0 23 119-141 3-25 (256)
364 3con_A GTPase NRAS; structural 94.9 0.012 4.2E-07 52.1 2.7 23 119-141 23-45 (190)
365 2bme_A RAB4A, RAS-related prot 94.8 0.013 4.3E-07 51.6 2.7 22 120-141 13-34 (186)
366 4dhe_A Probable GTP-binding pr 94.8 0.0096 3.3E-07 54.3 1.9 23 119-141 31-53 (223)
367 2efe_B Small GTP-binding prote 94.8 0.014 4.6E-07 51.0 2.8 22 120-141 15-36 (181)
368 3tlx_A Adenylate kinase 2; str 94.8 0.016 5.4E-07 55.0 3.4 25 116-140 28-52 (243)
369 2bov_A RAla, RAS-related prote 94.7 0.013 4.6E-07 52.3 2.7 22 120-141 17-38 (206)
370 1nrj_B SR-beta, signal recogni 94.7 0.013 4.5E-07 53.2 2.7 23 119-141 14-36 (218)
371 2gf0_A GTP-binding protein DI- 94.7 0.014 4.6E-07 51.9 2.7 22 119-140 10-31 (199)
372 1vg8_A RAS-related protein RAB 94.7 0.014 4.7E-07 52.4 2.8 23 119-141 10-32 (207)
373 2dby_A GTP-binding protein; GD 94.7 0.013 4.3E-07 59.8 2.8 21 120-140 4-24 (368)
374 3cbq_A GTP-binding protein REM 94.7 0.011 3.8E-07 53.5 2.1 22 119-140 25-46 (195)
375 2xb4_A Adenylate kinase; ATP-b 94.7 0.016 5.5E-07 54.0 3.2 23 119-141 2-24 (223)
376 2xtp_A GTPase IMAP family memb 94.7 0.015 5E-07 55.0 3.0 23 119-141 24-46 (260)
377 1m7b_A RND3/RHOE small GTP-bin 94.7 0.014 4.7E-07 51.8 2.7 22 120-141 10-31 (184)
378 1wf3_A GTP-binding protein; GT 94.7 0.016 5.3E-07 57.2 3.3 23 119-141 9-31 (301)
379 3u61_B DNA polymerase accessor 94.7 0.15 5.1E-06 49.5 10.3 44 240-285 105-149 (324)
380 1ksh_A ARF-like protein 2; sma 94.7 0.015 5.1E-07 51.3 2.8 25 117-141 18-42 (186)
381 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.015 5E-07 50.9 2.7 21 120-140 8-28 (186)
382 1uj2_A Uridine-cytidine kinase 94.7 0.016 5.5E-07 54.9 3.2 24 118-141 23-46 (252)
383 2gf9_A RAS-related protein RAB 94.6 0.015 5.1E-07 51.6 2.7 22 120-141 25-46 (189)
384 2grj_A Dephospho-COA kinase; T 94.6 0.017 5.9E-07 53.3 3.2 24 117-140 12-35 (192)
385 3a1s_A Iron(II) transport prot 94.6 0.016 5.5E-07 55.6 3.1 23 119-141 7-29 (258)
386 3t5d_A Septin-7; GTP-binding p 94.6 0.014 4.9E-07 56.0 2.7 23 120-142 11-33 (274)
387 2wsm_A Hydrogenase expression/ 94.6 0.017 5.6E-07 52.8 3.0 23 119-141 32-54 (221)
388 2fg5_A RAB-22B, RAS-related pr 94.6 0.016 5.3E-07 51.9 2.7 22 120-141 26-47 (192)
389 3tkl_A RAS-related protein RAB 94.6 0.02 6.7E-07 50.7 3.4 22 120-141 19-40 (196)
390 1zbd_A Rabphilin-3A; G protein 94.5 0.018 6.1E-07 51.7 3.0 22 120-141 11-32 (203)
391 3kkq_A RAS-related protein M-R 94.5 0.021 7E-07 50.1 3.4 21 120-140 21-41 (183)
392 3i8s_A Ferrous iron transport 94.5 0.017 5.8E-07 55.8 3.0 23 119-141 5-27 (274)
393 3v9p_A DTMP kinase, thymidylat 94.5 0.015 5.1E-07 55.3 2.6 29 114-142 22-50 (227)
394 3oes_A GTPase rhebl1; small GT 94.5 0.016 5.5E-07 52.2 2.7 23 119-141 26-48 (201)
395 3be4_A Adenylate kinase; malar 94.5 0.02 6.9E-07 52.9 3.4 26 116-141 4-29 (217)
396 1qvr_A CLPB protein; coiled co 94.5 0.036 1.2E-06 62.1 6.0 28 118-145 589-616 (854)
397 3t5g_A GTP-binding protein RHE 94.5 0.017 5.7E-07 50.7 2.7 21 119-139 8-28 (181)
398 2h57_A ADP-ribosylation factor 94.5 0.014 4.7E-07 51.9 2.1 23 119-141 23-45 (190)
399 3iev_A GTP-binding protein ERA 94.5 0.019 6.4E-07 56.5 3.3 23 119-141 12-34 (308)
400 1zj6_A ADP-ribosylation factor 94.5 0.019 6.3E-07 50.9 3.0 22 119-140 18-39 (187)
401 3dz8_A RAS-related protein RAB 94.5 0.017 5.7E-07 51.5 2.7 22 120-141 26-47 (191)
402 2o52_A RAS-related protein RAB 94.5 0.018 6.3E-07 51.9 3.0 22 120-141 28-49 (200)
403 2f6r_A COA synthase, bifunctio 94.5 0.019 6.4E-07 55.9 3.2 23 117-139 75-97 (281)
404 4edh_A DTMP kinase, thymidylat 94.5 0.021 7.2E-07 53.5 3.4 29 115-143 4-32 (213)
405 3vfd_A Spastin; ATPase, microt 94.5 0.16 5.5E-06 51.1 10.2 26 116-141 147-172 (389)
406 3bwd_D RAC-like GTP-binding pr 94.5 0.017 6E-07 50.3 2.7 23 119-141 10-32 (182)
407 3cnl_A YLQF, putative uncharac 94.5 0.022 7.4E-07 55.1 3.6 31 118-148 100-130 (262)
408 2cjw_A GTP-binding protein GEM 94.5 0.017 5.8E-07 52.1 2.7 21 120-140 9-29 (192)
409 2iwr_A Centaurin gamma 1; ANK 94.4 0.015 5.3E-07 50.7 2.3 21 120-140 10-30 (178)
410 4bas_A ADP-ribosylation factor 94.4 0.018 6.1E-07 51.2 2.7 23 119-141 19-41 (199)
411 1sky_E F1-ATPase, F1-ATP synth 94.4 0.0093 3.2E-07 62.8 0.9 45 104-149 139-183 (473)
412 2a5j_A RAS-related protein RAB 94.4 0.018 6.1E-07 51.3 2.7 22 120-141 24-45 (191)
413 2il1_A RAB12; G-protein, GDP, 94.4 0.017 6E-07 51.7 2.6 22 120-141 29-50 (192)
414 1z06_A RAS-related protein RAB 94.4 0.018 6.3E-07 51.1 2.8 21 120-140 23-43 (189)
415 3reg_A RHO-like small GTPase; 94.4 0.018 6.2E-07 51.3 2.7 22 120-141 26-47 (194)
416 1jbk_A CLPB protein; beta barr 94.4 0.024 8.2E-07 49.3 3.4 26 116-141 42-67 (195)
417 2bcg_Y Protein YP2, GTP-bindin 94.4 0.018 6.2E-07 51.8 2.7 22 120-141 11-32 (206)
418 3llu_A RAS-related GTP-binding 94.3 0.022 7.6E-07 51.1 3.2 24 119-142 22-45 (196)
419 1x3s_A RAS-related protein RAB 94.3 0.019 6.6E-07 50.7 2.7 23 119-141 17-39 (195)
420 2h17_A ADP-ribosylation factor 94.3 0.018 6.1E-07 50.9 2.5 23 119-141 23-45 (181)
421 2ew1_A RAS-related protein RAB 94.3 0.019 6.3E-07 52.5 2.7 21 120-140 29-49 (201)
422 1e4v_A Adenylate kinase; trans 94.3 0.022 7.4E-07 52.4 3.1 23 119-141 2-24 (214)
423 2atv_A RERG, RAS-like estrogen 94.3 0.02 6.7E-07 51.3 2.8 22 119-140 30-51 (196)
424 1zd9_A ADP-ribosylation factor 94.3 0.02 6.8E-07 51.0 2.7 22 120-141 25-46 (188)
425 2f7s_A C25KG, RAS-related prot 94.3 0.023 7.7E-07 51.6 3.1 23 120-142 28-50 (217)
426 2qu8_A Putative nucleolar GTP- 94.2 0.02 7E-07 52.8 2.8 23 119-141 31-53 (228)
427 1a7j_A Phosphoribulokinase; tr 94.2 0.012 4.1E-07 57.7 1.3 26 116-141 4-29 (290)
428 2q3h_A RAS homolog gene family 94.2 0.023 8E-07 50.8 3.0 23 119-141 22-44 (201)
429 2p5s_A RAS and EF-hand domain 94.2 0.021 7.1E-07 51.3 2.7 23 119-141 30-52 (199)
430 3cph_A RAS-related protein SEC 94.2 0.021 7.2E-07 51.4 2.7 23 119-141 22-44 (213)
431 2orv_A Thymidine kinase; TP4A 94.2 0.098 3.4E-06 50.2 7.5 51 239-295 89-150 (234)
432 4tmk_A Protein (thymidylate ki 94.2 0.027 9.2E-07 52.9 3.5 27 116-142 2-28 (213)
433 1jwy_B Dynamin A GTPase domain 94.2 0.024 8.2E-07 54.9 3.3 24 119-142 26-49 (315)
434 3lv8_A DTMP kinase, thymidylat 94.2 0.026 9E-07 53.9 3.5 27 116-142 26-52 (236)
435 2j1l_A RHO-related GTP-binding 94.1 0.024 8.2E-07 51.8 3.0 21 120-140 37-57 (214)
436 1ak2_A Adenylate kinase isoenz 94.1 0.028 9.7E-07 52.5 3.5 27 115-141 14-40 (233)
437 2fv8_A H6, RHO-related GTP-bin 94.1 0.022 7.7E-07 51.6 2.7 23 119-141 27-49 (207)
438 1ltq_A Polynucleotide kinase; 94.1 0.025 8.7E-07 54.5 3.2 22 118-139 3-24 (301)
439 1gwn_A RHO-related GTP-binding 94.0 0.023 7.8E-07 52.0 2.7 22 120-141 31-52 (205)
440 3c5c_A RAS-like protein 12; GD 94.0 0.025 8.5E-07 50.5 2.8 21 120-140 24-44 (187)
441 2ocp_A DGK, deoxyguanosine kin 94.0 0.03 1E-06 52.4 3.4 27 116-142 1-27 (241)
442 2fh5_B SR-beta, signal recogni 94.0 0.032 1.1E-06 50.5 3.5 23 119-141 9-31 (214)
443 2h92_A Cytidylate kinase; ross 94.0 0.026 8.8E-07 51.7 2.9 25 117-141 3-27 (219)
444 2fu5_C RAS-related protein RAB 93.9 0.017 5.7E-07 50.7 1.5 21 120-140 11-31 (183)
445 3tmk_A Thymidylate kinase; pho 93.9 0.031 1.1E-06 52.7 3.4 34 115-149 3-36 (216)
446 2qmh_A HPR kinase/phosphorylas 93.9 0.047 1.6E-06 51.4 4.6 37 104-141 22-58 (205)
447 2atx_A Small GTP binding prote 93.9 0.026 9.1E-07 50.1 2.7 21 120-140 21-41 (194)
448 2b6h_A ADP-ribosylation factor 93.9 0.026 8.7E-07 50.7 2.6 22 119-140 31-52 (192)
449 3def_A T7I23.11 protein; chlor 93.9 0.028 9.6E-07 53.6 3.0 22 120-141 39-60 (262)
450 2gco_A H9, RHO-related GTP-bin 93.9 0.026 9E-07 50.8 2.7 22 120-141 28-49 (201)
451 2aka_B Dynamin-1; fusion prote 93.8 0.026 9E-07 54.0 2.8 24 119-142 28-51 (299)
452 2p65_A Hypothetical protein PF 93.7 0.033 1.1E-06 48.6 2.9 26 117-142 43-68 (187)
453 1h65_A Chloroplast outer envel 93.6 0.032 1.1E-06 53.4 3.0 22 120-141 42-63 (270)
454 2hf9_A Probable hydrogenase ni 93.6 0.034 1.2E-06 50.9 2.9 23 119-141 40-62 (226)
455 3ld9_A DTMP kinase, thymidylat 93.6 0.039 1.3E-06 52.3 3.4 28 115-142 19-46 (223)
456 2g3y_A GTP-binding protein GEM 93.5 0.037 1.3E-06 51.4 3.1 22 120-141 40-61 (211)
457 2yc2_C IFT27, small RAB-relate 93.5 0.015 5.3E-07 51.8 0.4 22 119-140 22-43 (208)
458 4djt_A GTP-binding nuclear pro 93.5 0.016 5.5E-07 52.6 0.5 22 120-141 14-35 (218)
459 2hup_A RAS-related protein RAB 93.4 0.035 1.2E-06 50.2 2.7 22 120-141 32-53 (201)
460 1p5z_B DCK, deoxycytidine kina 93.4 0.026 8.8E-07 53.8 1.8 28 115-142 22-49 (263)
461 2x77_A ADP-ribosylation factor 93.4 0.025 8.6E-07 50.1 1.6 21 119-139 24-44 (189)
462 3cpj_B GTP-binding protein YPT 93.3 0.037 1.3E-06 50.7 2.8 22 120-141 16-37 (223)
463 3umf_A Adenylate kinase; rossm 93.3 0.044 1.5E-06 51.7 3.2 28 113-140 25-52 (217)
464 4gzl_A RAS-related C3 botulinu 93.3 0.037 1.3E-06 50.1 2.7 22 119-140 32-53 (204)
465 3pxi_A Negative regulator of g 93.3 0.19 6.4E-06 55.4 8.7 23 119-141 523-545 (758)
466 3d3q_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 55.5 3.2 25 118-142 8-32 (340)
467 2j0v_A RAC-like GTP-binding pr 93.2 0.038 1.3E-06 49.9 2.7 22 120-141 12-33 (212)
468 4dcu_A GTP-binding protein ENG 93.2 0.035 1.2E-06 57.6 2.6 56 226-285 88-144 (456)
469 2v3c_C SRP54, signal recogniti 93.2 0.011 3.7E-07 61.6 -1.4 44 112-155 92-137 (432)
470 2zts_A Putative uncharacterize 93.1 0.062 2.1E-06 49.5 3.9 26 113-138 26-51 (251)
471 3q3j_B RHO-related GTP-binding 93.1 0.041 1.4E-06 50.4 2.7 21 120-140 30-50 (214)
472 3euj_A Chromosome partition pr 93.1 0.14 4.8E-06 54.0 7.0 74 217-295 374-464 (483)
473 3exa_A TRNA delta(2)-isopenten 92.9 0.056 1.9E-06 54.2 3.5 25 117-141 3-27 (322)
474 2orw_A Thymidine kinase; TMTK, 92.8 0.064 2.2E-06 48.8 3.4 40 239-283 75-114 (184)
475 3a8t_A Adenylate isopentenyltr 92.7 0.067 2.3E-06 54.0 3.8 27 116-142 39-65 (339)
476 3crm_A TRNA delta(2)-isopenten 92.7 0.057 2E-06 54.1 3.2 25 118-142 6-30 (323)
477 2r62_A Cell division protease 92.6 0.017 5.7E-07 54.7 -0.8 31 108-140 37-67 (268)
478 3sr0_A Adenylate kinase; phosp 92.5 0.067 2.3E-06 49.8 3.2 23 119-141 2-24 (206)
479 4hlc_A DTMP kinase, thymidylat 92.4 0.073 2.5E-06 49.4 3.4 26 117-142 2-27 (205)
480 3p32_A Probable GTPase RV1496/ 92.4 0.044 1.5E-06 54.9 1.9 26 117-142 79-104 (355)
481 1puj_A YLQF, conserved hypothe 92.3 0.088 3E-06 51.3 3.9 30 117-146 120-149 (282)
482 2chg_A Replication factor C sm 92.3 0.069 2.4E-06 47.5 2.9 44 239-284 101-144 (226)
483 1wxq_A GTP-binding protein; st 92.2 0.065 2.2E-06 54.9 3.0 69 204-282 182-253 (397)
484 3gj0_A GTP-binding nuclear pro 92.1 0.047 1.6E-06 49.8 1.7 21 120-140 18-39 (221)
485 3th5_A RAS-related C3 botulinu 91.3 0.027 9.4E-07 50.6 0.0 22 119-140 32-53 (204)
486 3foz_A TRNA delta(2)-isopenten 91.6 0.098 3.4E-06 52.3 3.4 25 117-141 10-34 (316)
487 1lw7_A Transcriptional regulat 91.6 0.084 2.9E-06 52.9 3.0 30 221-250 295-329 (365)
488 3r7w_A Gtpase1, GTP-binding pr 91.5 0.11 3.7E-06 50.9 3.6 23 119-141 5-27 (307)
489 2hjg_A GTP-binding protein ENG 91.4 0.079 2.7E-06 54.5 2.6 22 119-140 5-26 (436)
490 3pvs_A Replication-associated 91.3 0.055 1.9E-06 56.3 1.3 35 110-144 41-77 (447)
491 3l0i_B RAS-related protein RAB 91.2 0.019 6.5E-07 51.6 -2.1 22 120-141 36-57 (199)
492 3gmt_A Adenylate kinase; ssgci 91.0 0.11 3.8E-06 49.6 3.0 23 118-140 9-31 (230)
493 3uk6_A RUVB-like 2; hexameric 91.0 0.11 3.9E-06 51.1 3.2 37 116-152 69-105 (368)
494 3tqf_A HPR(Ser) kinase; transf 90.9 0.26 8.8E-06 45.5 5.2 35 104-139 4-38 (181)
495 2qby_B CDC6 homolog 3, cell di 90.7 0.13 4.6E-06 50.6 3.4 26 116-141 44-69 (384)
496 2x2e_A Dynamin-1; nitration, h 90.7 0.074 2.5E-06 53.1 1.6 23 119-141 33-55 (353)
497 3sjy_A Translation initiation 90.7 0.12 4E-06 52.6 3.0 24 119-142 10-33 (403)
498 3eph_A TRNA isopentenyltransfe 90.6 0.14 4.7E-06 53.0 3.4 24 118-141 3-26 (409)
499 3geh_A MNME, tRNA modification 90.6 0.11 3.7E-06 54.4 2.7 24 117-140 224-247 (462)
500 1ofh_A ATP-dependent HSL prote 90.5 0.13 4.3E-06 49.1 2.9 25 117-141 50-74 (310)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.2e-57 Score=465.50 Aligned_cols=229 Identities=21% Similarity=0.301 Sum_probs=208.1
Q ss_pred ccCceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh--
Q psy10858 86 EEEADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-- 161 (457)
Q Consensus 86 ~~~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-- 161 (457)
..++|+++||+|+|+++ ...||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 34689999999999752 25799999999999999999999999999999999999999999999999998754432
Q ss_pred -hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 162 -TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 162 -~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
..|++|||+||++.+++.+||+||+.+....++.++++..+++.++++.++|.. .++++.+|||||||||+|||||++
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 236789999999999999999999999988888888888889999999999965 799999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
+|++||||||||||||..++.++++++.++ +.|+|||+|||||+++.. ||||++|++|++++.|++++++.....
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~ 257 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 257 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCS
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 999999999999999999999999987765 459999999999999975 999999999999999999999876543
No 2
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-57 Score=443.80 Aligned_cols=235 Identities=25% Similarity=0.379 Sum_probs=211.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++||+++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....+++|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 58999999999987 889999999999999999999999999999999999999999999999988754 223456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
||+||++.+++.+||+||+.++...++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999877677766666677888999999965 7899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~~ 325 (457)
||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.+.+....++++|....
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~~~~ 250 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV 250 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhhHHHHHHHHh
Confidence 99999999999999999988877779999999999999976 99999999999999999999987655566778776543
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.2e-57 Score=463.51 Aligned_cols=224 Identities=26% Similarity=0.355 Sum_probs=203.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGS 165 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~ 165 (457)
++|+++||+|+|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++... .....++
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 47999999999998 8999999999999999999999999999999999999999999999999887321 1123357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 89999999999999999999999887777777778888999999999965 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||||||||||+..+..+++. .+..++.|+|||+||||++++.. ||||++|++|+|++.|+|+++.+...
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 99999999999999999987 45556679999999999999975 99999999999999999999987643
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-56 Score=441.83 Aligned_cols=223 Identities=20% Similarity=0.324 Sum_probs=201.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CCchhhhcC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKTAGS 165 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~~~~~~r~ 165 (457)
++|+++||+++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++. .......++
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999987 88999999999999999999999999999999999999999999999998874 112223456
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+|||+||++.+++.+||+||+.++. ..++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 7999999999999999999999864 4556666666678889999999964 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||||||+||||.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+..
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999988876679999999999999975 9999999999999999999987653
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.5e-57 Score=463.14 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=206.1
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++||+|+|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~--~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH--HHCCEE
Confidence 6999999999998 899999999999999999999999999999999999999999999999998865433 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||||++.+|+.+||+||+.|+.+.++.++++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999988888888888899999999999965 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+..+..+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999877754 49999999999999975 99999999999999999999987654
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.1e-57 Score=447.50 Aligned_cols=224 Identities=21% Similarity=0.280 Sum_probs=201.3
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAG 164 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r 164 (457)
+++|+++||+++|++. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... .....+
T Consensus 5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 3589999999999752 4699999999999999999999999999999999999999999999999987421 122346
Q ss_pred CcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 165 SKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 165 ~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
++|||+||++. .+..+||+||+.+....++.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+++|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999973 3447899999999888788888888888999999999965 799999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|||||||+||||.+++.++++++.++ ++|+|||+||||++++.. ||||++|++|++++.|+++++++.
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999988775 559999999999999975 999999999999999999998764
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-56 Score=440.24 Aligned_cols=223 Identities=22% Similarity=0.324 Sum_probs=200.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----------
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS---------- 157 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~---------- 157 (457)
++|+++||+++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 58999999999987 889999999999999999999999999999999999999999999999988741
Q ss_pred Cch---hhhcCcEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858 158 IYH---KTAGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL 231 (457)
Q Consensus 158 ~~~---~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl 231 (457)
... ...+++|||+||++.+++.+||+||+.+.. ..++.+..+..+++.++++.+++.. +++++.+|||||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH
Confidence 111 123567999999999999999999999854 4556666666678889999999964 6899999999999999
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999988877679999999999999975 99999999999999999999876
Q ss_pred cC
Q psy10858 311 KY 312 (457)
Q Consensus 311 ~~ 312 (457)
..
T Consensus 243 ~~ 244 (262)
T 1b0u_A 243 NP 244 (262)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.2e-56 Score=428.76 Aligned_cols=215 Identities=26% Similarity=0.305 Sum_probs=194.9
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh-
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA- 163 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~- 163 (457)
++|+++|++++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...... ..
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999987 8899999999999999999999999999999999999999999999999987643321 12
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+++|||+||++.+++.+||+||+.+....++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2579999999999999999999998776667666666677889999999965 789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs 304 (457)
+|||||||+|||+.+++.++++++.++++|+|||++|||++++..||++++|++|++++.|+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999998887767999999999999986699999999999999875
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-56 Score=433.51 Aligned_cols=221 Identities=23% Similarity=0.355 Sum_probs=194.1
Q ss_pred ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh----
Q psy10858 89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---- 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---- 162 (457)
+|+++||+++|+++. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.......
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 589999999997422 46999999999999999999999999999999999999999999999999886544322
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHh
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~AL 237 (457)
.++.|||+||++.+++.+||+||+.+..... +.+.++..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2346999999999999999999999876543 4556667778889999999964 4899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
+++|++|||||||+|||+.+++.++++++.++++ |+|||+||||++.+..||||++|++|+++..++++++.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999998877554 99999999999977679999999999999999887653
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.2e-56 Score=453.56 Aligned_cols=224 Identities=25% Similarity=0.375 Sum_probs=205.2
Q ss_pred ccCceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 86 EEEADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 86 ~~~~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
...+|+++|++|+| ++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+
T Consensus 11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--PQK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC--GGG
T ss_pred CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC--hhh
Confidence 45689999999999 76 78999999999999999999999999999999999999999999999999876432 235
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 789999999999999999999999887777777777888999999999965 7999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|+|++.|+++++.+...
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999999877654 49999999999999965 99999999999999999999987643
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.9e-56 Score=437.44 Aligned_cols=227 Identities=21% Similarity=0.307 Sum_probs=202.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++|+++|++++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........++.+
T Consensus 10 ~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 58999999999998 8999999999999999999999999999999999999999999999999998765544556789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------C
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------K 240 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------~ 240 (457)
||++|++.+++.+||+||+.++...+. .....+++.++++.+++.. .++++.+|||||||||+|||||++ +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 999999999889999999998765442 2334567888999999965 789999999999999999999999 9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~ 318 (457)
|++|||||||+||||.++..++++++.++++ |+|||++|||++++.. ||||++|++|++++.|+++++.+. ..+.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~---~~l~ 242 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA---ETLT 242 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH---HHHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc---HHHH
Confidence 9999999999999999999999998777544 6899999999999975 999999999999999999998753 4555
Q ss_pred HHH
Q psy10858 319 DVF 321 (457)
Q Consensus 319 ~~f 321 (457)
+.|
T Consensus 243 ~~~ 245 (266)
T 4g1u_C 243 QWY 245 (266)
T ss_dssp HHC
T ss_pred HHh
Confidence 555
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.3e-56 Score=428.51 Aligned_cols=220 Identities=24% Similarity=0.315 Sum_probs=195.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~ 166 (457)
++|+++|++++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... .+++
T Consensus 5 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 58999999999987 88999999999999999999999999999999999999999999999999876443222 3456
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CC-CCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LP-NLERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
|||+||++.+++.+||+||+.++.. ...+.++..++++++++.++ +. ..++++.+|||||||||+|||||+++|++|
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999988642 22333445567788888884 84 478999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999988876679999999999999864 99999999999999999998865
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-56 Score=453.75 Aligned_cols=221 Identities=26% Similarity=0.332 Sum_probs=202.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++|+|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEE
Confidence 6999999999987 889999999999999999999999999999999999999999999999998865432 247899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||||++.+|+.+||+||+.|+.+.++.+.++..+++.++++.++|.. +++++++|||||||||+|||||+.+|++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999877667666666678899999999965 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999877654 49999999999999965 99999999999999999999987643
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-55 Score=452.60 Aligned_cols=221 Identities=27% Similarity=0.369 Sum_probs=203.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcEE
Confidence 6999999999987 889999999999999999999999999999999999999999999999998865432 246899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||||++.+|+.+||+||+.|....++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999887777777777888999999999965 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+..+..+++.++.+.+ .|+|||+||||++++.. ||||++|++|+|++.|+++++.++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999877654 49999999999999965 99999999999999999999987643
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4e-56 Score=435.19 Aligned_cols=218 Identities=21% Similarity=0.303 Sum_probs=195.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~ 166 (457)
++|+++|++++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..... ...++.
T Consensus 6 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 6 EILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred cEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 47999999999987 889999999999999999999999999999999999999999999999988754322 223567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhh--cC-----------CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMI--YG-----------MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--~g-----------~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRls 232 (457)
|||+||++.+++.+||+||+.+.... .+ .+..+..+++.++++.+++.. .++++.+|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999986543 23 233445667888999999964 79999999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~ 307 (457)
|||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|++++
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999988877779999999999999865 99999999999999999988
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.7e-56 Score=453.06 Aligned_cols=223 Identities=26% Similarity=0.349 Sum_probs=202.5
Q ss_pred ceEEEeeEEEeCCCCce--eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhhh
Q psy10858 89 ADEGKNTEKEELKPSNV--VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~--aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~~ 163 (457)
+|+++|++++|++ +. +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 6999999999987 77 999999999999999999999999999999999999999999999998764310 1123
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
+++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999877777777777788999999999965 799999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
+|||||||+|||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 233 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999999877654 49999999999999965 99999999999999999999987643
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-55 Score=452.76 Aligned_cols=221 Identities=29% Similarity=0.377 Sum_probs=202.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC------Cchhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------IYHKT 162 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~------~~~~~ 162 (457)
+|+++|++++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. .. .
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~--~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP--P 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC--G
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC--H
Confidence 5899999999987 889999999999999999999999999999999999999999999999987643 21 2
Q ss_pred hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
.+++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 24689999999999999999999999888778887777888999999999965 79999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
++|||||||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999877654 49999999999999965 99999999999999999999987643
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-55 Score=452.16 Aligned_cols=221 Identities=25% Similarity=0.340 Sum_probs=195.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEE
Confidence 5999999999987 889999999999999999999999999999999999999999999999998865432 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999877777777777788999999999965 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.++..
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999877654 49999999999999965 99999999999999999999987643
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.3e-55 Score=446.35 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=197.2
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++|++ + +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++||
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 5899999999987 7 9999999999999999999999999999999999999999999999998764322 346799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
||||++.+|+.+||+||+.|+...++.+.. +++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999998776665443 67888999999965 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
|||+|||+..++.+++.++.+. +.|+|||+||||++++.. ||||++|++|++++.|+++++.++..
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 9999999999999999987764 459999999999999965 99999999999999999999987644
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.9e-55 Score=422.50 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=191.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
||+++|++++|++ +|+||||+|++ |++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..+++||
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 5889999999975 39999999999 999999999999999999999999999999999998875422 2356899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD 247 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD 247 (457)
|+||++.+++.+||+||+.+....++.+ ...+++.++++.+++.. .++++.+|||||||||+|||||+++|++||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 151 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999865544322 22567888999999965 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
|||+|||+.+++.++++++.+++ .|+|||++|||++++.. |||+++|++|++++.|+++++.+..
T Consensus 152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999877654 49999999999999865 9999999999999999999987654
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-54 Score=429.77 Aligned_cols=230 Identities=21% Similarity=0.357 Sum_probs=195.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CCchhhhc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKTAG 164 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~~~~~~r 164 (457)
.++|+++||+++|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. .......+
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 357999999999987 88999999999999999999999999999999999999999999999998875 33333456
Q ss_pred CcEEEEcCCCCCC--CCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 165 SKVGYMPQELAMF--GELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 165 ~~IGyvpQ~~~L~--~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++|||+||++.++ ..+||+||+.+... +++...++..+++.++++.+++.. +++++.+|||||||||+|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 7899999997643 35699999987532 122223344567888999999964 7899999999999999999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV--IMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM 314 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TI--IisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~ 314 (457)
+.+|++|||||||+|||+.+++.++++++.++++|+|| |++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--- 253 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS--- 253 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH---
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc---
Confidence 99999999999999999999999999987776569999 999999999864 999999999999999999988643
Q ss_pred ccHHHHH
Q psy10858 315 PKLSDVF 321 (457)
Q Consensus 315 ~~l~~~f 321 (457)
..+.++|
T Consensus 254 ~~~~~~~ 260 (279)
T 2ihy_A 254 ENMSRFF 260 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344444
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-54 Score=423.53 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=193.2
Q ss_pred ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
+|+++|++++|+.++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 689999999997222 4799999999999999999999999999999999999999999999999877431 3467
Q ss_pred cEEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--C-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 166 KVGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--N-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 166 ~IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
+|||+||++ .+++.+||+||+.++...+ .+..+..+++.++++.+++. . .++++.+|||||||||+|||||+++|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 899999996 5667799999999865433 33333346678899999997 6 78999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999988876669999999999999975 999999999999999999988754
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.7e-53 Score=411.86 Aligned_cols=217 Identities=23% Similarity=0.268 Sum_probs=186.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhh-hcC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKT-AGS 165 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~-~r~ 165 (457)
+|+++|++++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++....... .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 6999999999987 8899999999999999999999999999999999999 7899999999999876543222 245
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhh-hcC--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCC-CChhHHHHHHHHHHhhc
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGM-IYG--MDESIWLFQMRKYSHVLKLP-N-LERPVKY-LSGGQKRRLSFTIAILH 239 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~-LSGGqkQRlsLA~ALl~ 239 (457)
.+||+||++.+++.+||+||+.+... ..+ .+..+..+++.++++.+++. . .++++++ |||||||||+|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 69999999999999999999987653 223 23344556788899999994 4 6899999 99999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhh
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDG 307 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~ 307 (457)
+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999988876679999999999999875 59999999999999999873
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1e-52 Score=413.60 Aligned_cols=221 Identities=24% Similarity=0.263 Sum_probs=191.4
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhh-
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTA- 163 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~- 163 (457)
.++|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+ .+|++|+|+++|+++........
T Consensus 18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 358999999999987 8899999999999999999999999999999999999 47899999999988754332222
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhh-h---cC---CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHH
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGM-I---YG---MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSF 233 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l---~g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsL 233 (457)
++.|||+||++.+++.+||.||+.+... . ++ .+.++..+++.++++.+++. . .++++. +|||||||||+|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 3459999999999999999999987531 1 22 34445566788899999995 3 688887 599999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhh
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~ 309 (457)
||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999988876679999999999999864 8999999999999999988764
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-52 Score=409.00 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=183.5
Q ss_pred ceEEEeeEEEe--CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 89 ADEGKNTEKEE--LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~y--g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
-|+++||+++| ++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++........+++
T Consensus 7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 48999999999 34 789999999999999999999999999999999999999999999999998865444445678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA 234 (457)
|||+||++.+|+ .||+||+.++.. ..+. +++.++++.+++. ..++++.+|||||||||+||
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANP--GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCT--TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccCC--CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 999999999886 699999987531 2222 2334444544442 13567799999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999987774 59999999999999877999999999999999999998764
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.3e-52 Score=408.30 Aligned_cols=207 Identities=22% Similarity=0.247 Sum_probs=185.8
Q ss_pred CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
++|+++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +++
T Consensus 3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQS 67 (253)
T ss_dssp EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSC
T ss_pred ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------ecc
Confidence 3799999999998 6 78999999999999999999999999999999999999999999981 357
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhc-C---CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIY-G---MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP 241 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g---~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P 241 (457)
|||+||++.+++.+||+||+.++...+ + .......+++.++++.+++.. .++++.+|||||||||+|||||+++|
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999998999999999865322 2 223344567888999999965 78999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
++|||||||+|||+.+++.++++++.++++ |+|||++|||++++. .|||+++|++|+ ++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999999998877666 999999999999996 599999999999 99999998864
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.4e-53 Score=416.60 Aligned_cols=222 Identities=20% Similarity=0.250 Sum_probs=188.9
Q ss_pred CceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+|+++||+++|++ .++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++........+++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999975 22579999999999999999999999999999999999999999999999988754333345668
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHH-----HHHHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-----LFQMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~-----~~~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
|||+||++.+|+ .||+||+.++..... ..+.. ...+.++++.+ ++.. .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999887 599999988643221 11111 12234566666 5643 68899999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
++|+||||||||+|||+.+++.++++++.+.+ +|+|||+|||+++++..||||++|++|++++.|+++++.+.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999887653 59999999999999877999999999999999999998764
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.1e-53 Score=407.99 Aligned_cols=214 Identities=21% Similarity=0.315 Sum_probs=185.1
Q ss_pred ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
||+++|++++| ++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++........+++|
T Consensus 1 ml~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE
Confidence 58999999999 55 7899999999999999999999999999999999999999999999999887654333456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-C-----------CCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-L-----------ERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~-----------~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+ .||+||+.++.. .+... +++.++++.+++.. . ++++.+|||||||||+|||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE-GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT-SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc-CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence 99999999887 599999987522 12222 33556677777643 2 3456899999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 153 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999999988776 69999999999998877999999999999999999998764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.8e-52 Score=415.60 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=186.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+++|++. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+....|+.|
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 469999999999642 6899999999999999999999999999999999999999999999999998776666677889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+ .||+||+.++.... ..++..+..+ +.++.+ ++. ..++.+.+|||||||||+|||||++
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 99999999985 59999998764322 2222222111 112222 221 1467788999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|+||||||||||||+.+++.|++.++.+. +++|||+|||+++.+..||||++|++|+|++.|+++++++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999987765 47999999999999988999999999999999999999875
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.8e-52 Score=405.49 Aligned_cols=211 Identities=20% Similarity=0.269 Sum_probs=187.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++|++++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++........++++
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 37999999987 4799999999999999999999999999999999999999 9999999887543334456689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc----
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ---- 242 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~---- 242 (457)
||+||++.+++.+||+||+.++.. .+.+ .+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred EEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 999999999999999999987532 2222 456778899999965 789999999999999999999999999
Q ss_pred ---eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858 243 ---LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 243 ---lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+|||||||+|||+.+++.++++++.+.++|+|||++|||++++. .|||+++|++|++++.|+++++.+
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999998887666999999999999985 599999999999999999998864
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.8e-51 Score=400.29 Aligned_cols=215 Identities=20% Similarity=0.337 Sum_probs=182.5
Q ss_pred CceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.+|+++||+++|++.. +.+|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++........++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 5799999999998621 4699999999999999999999999999999999999987 8999999988754433445678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA 234 (457)
|||+||++.+|+ .||+||+.+... ....+ ++.++++.+++ +. .++++.+|||||||||+||
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKL--DATDE----EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCT--TCCHH----HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCC--CCCHH----HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 999999999886 699999987431 12222 23344444443 21 2467899999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999988775 48999999999999877999999999999999999998764
No 32
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-51 Score=422.01 Aligned_cols=216 Identities=24% Similarity=0.282 Sum_probs=190.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++||+|+|+++++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++........++.|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 5799999999994323789999999999999999999999999999999999998 999999999998765554556789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCC-----------CChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKY-----------LSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~-----------LSGGqkQRlsLA~ 235 (457)
|||||++.+|+ +||+||+.++. ... .+++.++++.++|.. .++++.+ |||||||||+|||
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 99999999997 69999996432 122 245677888899854 6888887 9999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYS 313 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~ 313 (457)
||+.+|++|||||||||||+..+..+++.++.. ..++|||++||+++.+..||||++|++|+|++.|+|+++.+...
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999999999999999999998765 45899999999997766799999999999999999999988754
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-51 Score=391.45 Aligned_cols=202 Identities=19% Similarity=0.290 Sum_probs=176.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+|+++|++++|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..++.
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 358999999999974 7999999999999999999999999999999999999999999999998764 23578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|||+||++.+++.+||+||+.++...++. ..+ .+++.++++.+++...++++.+|||||||||+|||||+.+|++|||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999987665553 222 4567888999999533888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+++++ .|+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999988776668999999999999976 7776644 5554
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-50 Score=398.69 Aligned_cols=209 Identities=25% Similarity=0.329 Sum_probs=184.3
Q ss_pred ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
||+++|++++|++. .+.+|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++... .. +++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhh
Confidence 58999999999641 1469999999999 9999999999999999999999999 9999999999876432 22 578
Q ss_pred EE-EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 167 VG-YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 167 IG-yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+| |+||++.+ .+||+||+.++...++.. .+++.++++.+++. . .++++.+|||||||||+|||||+++|++
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 149 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI 149 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99 99999987 889999999876544322 34577888999997 6 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccC-eEEEEeCCeEEEecChhhhhhc
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DAS-EVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~d-ri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||||||+|||+.+++.++++++.+.+ |||++|||++++. .|| ++++|++|++++.|+++++.+.
T Consensus 150 llLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 150 VGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999999877643 9999999999986 499 9999999999999999988653
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.6e-50 Score=385.43 Aligned_cols=202 Identities=25% Similarity=0.305 Sum_probs=170.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|+++++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 47999999999963237899999999999999999999999999999999999999999999987 39
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-----CCCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-----NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-----~~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+++. ||+||+.++.. ..... ..++++.+++ + ..++++.+|||||||||+|||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSC---CCHHH----HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCC---cChHH----HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 999999999885 99999987532 11111 1112222222 1 124567899999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++|||||||+|||+.+++.+++. ++... +|+|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999997 44443 48999999999999877999999999999999999998754
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6e-50 Score=387.33 Aligned_cols=204 Identities=21% Similarity=0.336 Sum_probs=172.5
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++|++++|++.++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +||
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 6999999999983226899999999999999999999999999999999999999999999987 399
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH---HHhHcCC-C-----CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKL-P-----NLERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~---ll~~l~L-~-----~~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|+||++.+ +.+||+||+.++... ..+.. +++.+ +.+.+++ + ..++++.+|||||||||+|||||+.
T Consensus 70 ~v~Q~~~~-~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 70 YVPQQAWI-QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp EECSSCCC-CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCcC-CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999875 578999999875432 11111 12222 1223333 1 1468899999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQ---VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~---~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+|++|||||||+|||+.+++.+++.+. .+ ++|+|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999973 33 358999999999999877999999999999999999998764
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-48 Score=420.12 Aligned_cols=229 Identities=26% Similarity=0.363 Sum_probs=191.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 47999999999965447899999999999999999999999999999999999999999999999998766656677899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH 239 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~ 239 (457)
|||||++.+|+. ||+||+.++... .+.++..+..+ +.++.+ ++.. .++++.+||||||||++|||||++
T Consensus 420 ~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 999999999865 999999865321 22333222221 112222 2222 467889999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~ 319 (457)
+|++||||||||+||+.+++.+++.++.+ .+|+|+|++||+++.+..||||++|++|++++.|+++++.++. ....+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~--~~~~~ 573 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC--KPYRE 573 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHC--HHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCC--cHHHH
Confidence 99999999999999999999999998776 4589999999999999889999999999999999999998652 23444
Q ss_pred HHH
Q psy10858 320 VFY 322 (457)
Q Consensus 320 ~f~ 322 (457)
.|.
T Consensus 574 ~~~ 576 (587)
T 3qf4_A 574 IYE 576 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.2e-48 Score=418.59 Aligned_cols=217 Identities=18% Similarity=0.282 Sum_probs=187.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 47999999999975335799999999999999999999999999999999999999999999999988665555667899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+. ||+||+.++.. .+.+. +++.++++.+++.+ .++...+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 420 ALVSQNVHLFND-TIANNIAYAAE-GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred EEEcCCCccccc-cHHHHHhccCC-CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999999999875 99999987531 12232 23444555554421 34567899999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++|||||||||||+.+++.+++.++.+. +|+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999987765 49999999999999988999999999999999999999764
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.3e-48 Score=416.21 Aligned_cols=216 Identities=21% Similarity=0.342 Sum_probs=185.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..++++|++++|++++..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999976446799999999999999999999999999999999999999999999999998766656677889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-----CCCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-----NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-----~~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+. ||+||+.++.. ..+.++ +.++++..++ + ..++...+|||||||||+|||
T Consensus 418 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr 490 (578)
T 4a82_A 418 GLVQQDNILFSD-TVKENILLGRP--TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490 (578)
T ss_dssp EEECSSCCCCSS-BHHHHHGGGCS--SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 999999999876 99999987532 122322 2233333322 1 134566799999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++|||||||||||+.+++.+++.++.+. +|+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus 491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 491 IFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999987764 57999999999999988999999999999999999999875
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-47 Score=413.61 Aligned_cols=217 Identities=19% Similarity=0.280 Sum_probs=187.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++|++++|+++++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....++++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 47999999999974225799999999999999999999999999999999999999999999999998765555567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+. ||+||+.++.. .+.+++ ++.++++.+++. ..++.+.+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~----~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYART-EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTT-SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred eEEccCCcCCCC-CHHHHHhccCC-CCCCHH----HHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987531 123332 344445554442 135677899999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++|||||||||||+.+++.+++.++.+.+ |+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999887754 9999999999999888999999999999999999999765
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-47 Score=415.03 Aligned_cols=215 Identities=24% Similarity=0.332 Sum_probs=183.3
Q ss_pred eEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 90 DEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
|+++|++++|++. +..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....+++||
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999752 257999999999999999999999999999999999999999999999999987655555677899
Q ss_pred EEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHHH
Q psy10858 169 YMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA~ 235 (457)
|+||++.+|+ .||+||+.++.... +.++ +++.++++.+++ +. .++.+.+|||||||||+|||
T Consensus 422 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 422 TVSQEPILFS-CSIAENIAYGADDPSSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp EECSSCCCCS-SBHHHHHHTTSSSTTTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred EEccCCcccC-CCHHHHHhhcCCCccccCH----HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 9999999987 59999998764321 1233 334455555554 21 23456899999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
||+++|++|||||||||||+.+++.+++.++.+.+ |+|+|++||+++.++.||||++|++|++++.|+++++.+
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999887755 899999999999998899999999999999999999875
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-47 Score=414.03 Aligned_cols=215 Identities=25% Similarity=0.351 Sum_probs=185.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
..|+++|++++|++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....|+++
T Consensus 353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 469999999999742 6799999999999999999999999999999999999999999999999998766666677899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHH
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~ 235 (457)
||+||++.+|+ .||+||+.++.. +.++++ +.++++..++.. .++...+||||||||++|||
T Consensus 432 ~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 432 GIVLQDTILFS-TTVKENLKYGNP--GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEECTTCCCCS-SBHHHHHHSSST--TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred EEEeCCCcccc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 99999999986 599999987532 222222 333444444321 12334789999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
||+++|++||||||||+||+.+++.+.+.++.+. +|+|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999987764 59999999999999988999999999999999999999875
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-46 Score=374.99 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=153.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+++++|+++. . +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +
T Consensus 38 ~~~l~~~~l~~~--~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLL--G--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp --------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEc--C--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 357999999985 3 5689999999999999999999999999999999999999999999976 4
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA 234 (457)
|||+||++.+|+. ||+||+. ... ..... ..++++.+++. ..++.+.+|||||||||+||
T Consensus 101 i~~v~Q~~~l~~~-tv~enl~-~~~---~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 101 ISFCSQNSWIMPG-TIKENII-GVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEEECSSCCCCSS-BHHHHHH-TTC---CCHHH----HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEEeCCCccCcc-cHHHHhh-Ccc---cchHH----HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 9999999998875 9999997 321 12211 12222222321 12445789999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
|||+++|++|||||||+|||+.+++.+++. ++.+. +|+|||++||+++++..||++++|++|++++.|+++++..
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999999999997 44443 5899999999999987799999999999999999999864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-44 Score=419.26 Aligned_cols=218 Identities=22% Similarity=0.310 Sum_probs=189.2
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..|+++||+++|..+ +..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+....|++
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 369999999999642 3579999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-------CCC-CC----CCCCCCChhHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-------LPN-LE----RPVKYLSGGQKRRLSFT 234 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-------L~~-~~----~~~~~LSGGqkQRlsLA 234 (457)
||||||++.||+. |++|||.|+......+++++. ++++..+ |+. .| ....+||||||||++||
T Consensus 1155 i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~----~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVE----EAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHH----HHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred eEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHH----HHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 9999999999976 999999865332333444433 3333333 222 33 44567999999999999
Q ss_pred HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
|||+++|+|||||||||+||+.+.+.|.+.++.. .+|+|+|+++|.++.+..||||++|++|+|++.|+|++|+++
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~-~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT-SSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998765 358999999999999999999999999999999999999986
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-43 Score=411.26 Aligned_cols=223 Identities=20% Similarity=0.296 Sum_probs=188.3
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..++++||+++|++. +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....|++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 469999999999752 2469999999999999999999999999999999999999999999999999887666677889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--HhHc-CCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--SHVL-KLPN-----LERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l~~l-~L~~-----~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
||||||++.+|+ .||+||+.++......+.++..+..+.. .+.. .++. ......+|||||||||+|||||+
T Consensus 1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp CEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 999999998875 6999999875433334444443333221 1111 1221 24456789999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
++|+||||||||+|||+.+++.+++.++.. .+|+|||++||+++++..||||++|++|+|++.|+++++.++.
T Consensus 1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1188 RQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp HCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999998775 4699999999999999889999999999999999999998763
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.6e-43 Score=408.16 Aligned_cols=220 Identities=22% Similarity=0.272 Sum_probs=187.7
Q ss_pred CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..|+++|++++|++. +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....|++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 469999999999752 2579999999999999999999999999999999999999999999999999877666677889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHcC--CC-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVLK--LP-NLERPVKYLSGGQKRRLSFTIAIL 238 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l~--L~-~~~~~~~~LSGGqkQRlsLA~ALl 238 (457)
||||||++.+|+. ||+||+.++.. ..+.++..+..+ +.++.+. +. ..++...+|||||||||+|||||+
T Consensus 466 i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 9999999999876 99999988643 233333333322 2222221 11 145677899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+|+|||||||||+||+.+.+.+.+.++... +|+|+|++||+++.+..||+|++|++|+|++.|+++++.++
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999987754 59999999999999988999999999999999999999865
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.7e-43 Score=379.48 Aligned_cols=203 Identities=21% Similarity=0.247 Sum_probs=178.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..+++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ..+
T Consensus 355 ~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~ 418 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLT 418 (607)
T ss_dssp CEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCC
T ss_pred ceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeE
Confidence 458999999999986 4 699999999999999999999999999999999999999999975 146
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHh-hhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFF-GMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~-~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
|||+||++.+++.+||.|++... ...+ ...+++.++++.+++.. .++++.+|||||||||+||+||+++|++|
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred EEEEecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999888889999988654 1111 11345677889999964 78999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS 310 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~ 310 (457)
||||||+|||+.++..++++++.+. +.|+|||+||||++++.. |||+++|++ |++.+.|+|+++.+
T Consensus 494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999987764 569999999999999975 999999986 88889999988865
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7e-43 Score=374.50 Aligned_cols=204 Identities=21% Similarity=0.258 Sum_probs=178.0
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++|+++.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ..+
T Consensus 285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~ 348 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLT 348 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCC
T ss_pred CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------Cce
Confidence 457999999999986 4699999999999999999999999999999999999999999975 136
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|||+||++.+++.+||.|++...... +.. ..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999887889999988653111 011 1245677888999854 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.++..++++++.+. +.|.|||++|||++++.. ||||++|++ |++.+.|+|+++.+
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999987765 469999999999999975 999999986 78999999988764
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-42 Score=403.29 Aligned_cols=219 Identities=22% Similarity=0.323 Sum_probs=188.6
Q ss_pred CceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 88 EADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 88 ~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
..|+++|++++|.+ .+..+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|.++...+....|++
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 36999999999964 23689999999999999999999999999999999999999999999999999988887788899
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHcCCCC-----CCCCCCCCChhHHHHHHHHHH
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVLKLPN-----LERPVKYLSGGQKRRLSFTIA 236 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA~A 236 (457)
||||+|++.+|.. ||+||+.|+.. ..+.++..+.++. .++. |+. ......+||||||||++||||
T Consensus 494 i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~--lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 494 VAVVSQEPALFNC-TIEENISLGKE--GITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHH--STTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred ccccCCcceeeCC-chhHHHhhhcc--cchHHHHHHHHHHccchhHHHc--CCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 9999999999865 99999987632 2334443333222 1222 222 245677899999999999999
Q ss_pred hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312 (457)
Q Consensus 237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~ 312 (457)
++++|+|||||||||+||+.+.+.+.+.++.+. +|+|+|++||++..+..||+|++|++|+|++.|+.++|.++.
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 999999999999999999999998888887764 589999999999999999999999999999999999998753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-42 Score=369.85 Aligned_cols=206 Identities=18% Similarity=0.185 Sum_probs=176.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++++++++++.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..
T Consensus 267 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred cceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 467999999999986 468888999999999999999999999999999999999999998643 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
++|+||+......+||.||+.+..... ... ....+.++++.+++.. .++++.+|||||||||+|||||+++|++||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred eEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 899999987777899999998742211 111 1234677888888854 799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~ 310 (457)
|||||+|||+.++..++++++.+. +.|+|||+||||++++.. ||||++|++ |.+...++|.++..
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 999999999999999999987765 469999999999999975 999999986 66777777776543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=359.95 Aligned_cols=201 Identities=19% Similarity=0.233 Sum_probs=170.7
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRR-----EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~G-----ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
++++++|.+. ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. + .+..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~-------~~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I-------PKLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C-------CSCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c-------cCCcE
Confidence 6677888752 46899999999999 7899999999999999999999999999962 1 12469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
+|+||+.......||+|++... ..+... ....+.++++.+++.. +++++.+|||||||||+|||||+++|+||||
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlL 491 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLI 491 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999998777778999987532 222111 1234567788899965 7999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhhc
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKSK 311 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~~ 311 (457)
||||+|||+.++..++++++.+. +.|+|||++|||++++.. ||||++|++ |++++.|+|+++++.
T Consensus 492 DEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 492 DEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999987764 569999999999999975 999999996 999999999999874
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5e-41 Score=364.79 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=163.6
Q ss_pred ceEE--------EeeEEEeCCCCc-eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EE
Q psy10858 89 ADEG--------KNTEKEELKPSN-VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---------WV 150 (457)
Q Consensus 89 ~Iei--------~nlsk~yg~~~~-~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---------~i 150 (457)
+|++ +|++++|++ . .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 6888 899999987 5 5999999 999999999999999999999999999999999995 34
Q ss_pred cCccCCCCch--hhhcCcEEEEcCCCCCCC---CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCC
Q psy10858 151 LGGHPASIYH--KTAGSKVGYMPQELAMFG---ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLS 224 (457)
Q Consensus 151 ~G~~~~~~~~--~~~r~~IGyvpQ~~~L~~---~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LS 224 (457)
.|.++..... ...+..+++++|...+++ ..||.|++... . ..+++.++++.++|.. +++++.+||
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~~~~~~~~~~LS 230 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELENVLDRELHQLS 230 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCTTGGGSBGGGCC
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCCchhCCChhhCC
Confidence 4543321100 112356899999754322 23899998631 1 1234677889999965 799999999
Q ss_pred hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG 297 (457)
Q Consensus 225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G 297 (457)
|||||||+||+||+++|++|||||||+|||+.++..++++++.+.++|+|||+||||++++.. ||||++|+++
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999999999999999999999999999999999999999988877779999999999999875 9999999864
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.7e-40 Score=361.97 Aligned_cols=212 Identities=21% Similarity=0.293 Sum_probs=147.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCCc-------eEEEEcCccC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL---------------------KAIVGLKNISQ-------GEIWVLGGHP 155 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL---------------------k~L~Gll~p~s-------G~I~i~G~~~ 155 (457)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+. |.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 6789999999999999999999999999998 99999999984 4555555443
Q ss_pred CCCchhhhcCcEEEEcCCCC-------------------CCCCCCHHHHHHHhhhhcC--CCHHH-------HHHHHHHH
Q psy10858 156 ASIYHKTAGSKVGYMPQELA-------------------MFGELTIKETLNFFGMIYG--MDESI-------WLFQMRKY 207 (457)
Q Consensus 156 ~~~~~~~~r~~IGyvpQ~~~-------------------L~~~lTV~EnL~~~~~l~g--~~~~~-------~~~~~~~l 207 (457)
.. ..++.+||++|... .++.+||.||+.++..+.. ..... ..++ ..+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 185 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGF 185 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHH
Confidence 21 12344555555433 3467899999987543211 11100 1111 235
Q ss_pred HhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858 208 SHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 208 l~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ 283 (457)
++.++|.. +++++.+|||||||||+|||||+++|+ +|||||||+||||..++.++++++.++++|+|||+||||++
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 77888864 589999999999999999999999998 99999999999999999999998888878999999999999
Q ss_pred HHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 284 EANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 284 ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
++..||||++| ++|++++.|+++++.+.. ..+...|.
T Consensus 266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~--~~~~~~~~ 308 (670)
T 3ux8_A 266 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP--NSLTGQYL 308 (670)
T ss_dssp HHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCT--TCHHHHHH
T ss_pred HHhhCCEEEEecccccccCCEEEEecCHHHHhcCc--hhHHHHHh
Confidence 88779999999 899999999999987653 34555555
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.3e-41 Score=358.44 Aligned_cols=196 Identities=20% Similarity=0.246 Sum_probs=160.0
Q ss_pred eEE-EeeEEEeCCCCc-eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcCccCCCC
Q psy10858 90 DEG-KNTEKEELKPSN-VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---------WVLGGHPASI 158 (457)
Q Consensus 90 Iei-~nlsk~yg~~~~-~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---------~i~G~~~~~~ 158 (457)
.++ +||+|+|++ . .+|++|| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 444 699999987 5 5999999 999999999999999999999999999999999995 3445433210
Q ss_pred ch--hhhcCcEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHH
Q psy10858 159 YH--KTAGSKVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS 232 (457)
Q Consensus 159 ~~--~~~r~~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRls 232 (457)
.. ...+..+++++|...+++. .|+.|++... . ..+++.++++.+++.. .++++.+|||||||||+
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~ 168 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVA 168 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH
Confidence 00 1123468999998654432 3898887531 1 1234677899999965 78999999999999999
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG 297 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G 297 (457)
||+||+.+|++|||||||++||+.+++.++++++.++++|+|||+||||++++.. ||||++|++|
T Consensus 169 iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999988877789999999999999975 9999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-38 Score=360.30 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=168.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
.+...|++++|++ +.+|+|+||+|++||++||+||||||||||||+|+| |+| .|.+.. . ..+++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TSCEE
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ceeEE
Confidence 5677799999998 899999999999999999999999999999999995 544 343321 1 13479
Q ss_pred EEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 169 YMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 169 yvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|++|+. .+++.+||.||+.+ ...+. .+++.++++.+++. . .++++.+|||||||||+|||||+.+|++||
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred EEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999985 67889999999975 22232 45678889999995 3 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhhh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFKS 310 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~~ 310 (457)
|||||+|||+.+++.++++++. .|+|||++|||++++.. |||+++|++|+++ ..|+++++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999876 58999999999999975 9999999999997 6899988764
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.9e-39 Score=366.27 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=162.6
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~ 166 (457)
.++|+++|++++|++.++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. .+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CC
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cc
Confidence 3589999999999753357999999999999999999999999999999999999999999999752 14
Q ss_pred EEEEcCCCC----CCCCCCHHHHHHHhhh---------------------------------------------------
Q psy10858 167 VGYMPQELA----MFGELTIKETLNFFGM--------------------------------------------------- 191 (457)
Q Consensus 167 IGyvpQ~~~----L~~~lTV~EnL~~~~~--------------------------------------------------- 191 (457)
+||++|++. ...+.|+.+++.+...
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 777777642 1123466666543100
Q ss_pred --------------------------------------------------hcCCCHHHHHHHHHHHHhHcCCCC---CCC
Q psy10858 192 --------------------------------------------------IYGMDESIWLFQMRKYSHVLKLPN---LER 218 (457)
Q Consensus 192 --------------------------------------------------l~g~~~~~~~~~~~~ll~~l~L~~---~~~ 218 (457)
..+.......+++.++++.++|.. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000000011345778899999963 478
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG 297 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G 297 (457)
++.+|||||||||+|||||+++|+||||||||+|||+.++..+++.++.. |.|||++|||++++.. |||+++|++|
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999998887543 6799999999999965 9999999999
Q ss_pred eEEEecC
Q psy10858 298 RIIAQDS 304 (457)
Q Consensus 298 kI~~~gs 304 (457)
+++..|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.7e-38 Score=343.64 Aligned_cols=201 Identities=24% Similarity=0.374 Sum_probs=155.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCceEEEEcCccCCCCchh
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------------------GLKNISQGEIWVLGGHPASIYHK 161 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------------------Gll~p~sG~I~i~G~~~~~~~~~ 161 (457)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ +|.|.++|.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 56899999999999999999999999999998754 44444 46888888765421100
Q ss_pred h-----------------------------------------hcCcEEEEcCCCCCCC----------------------
Q psy10858 162 T-----------------------------------------AGSKVGYMPQELAMFG---------------------- 178 (457)
Q Consensus 162 ~-----------------------------------------~r~~IGyvpQ~~~L~~---------------------- 178 (457)
. .....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 0012344544443322
Q ss_pred ----------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ce
Q psy10858 179 ----------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QL 243 (457)
Q Consensus 179 ----------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~l 243 (457)
.+||.||+.++.... ..++..+.+..+++.. .++++.+|||||||||+|||||+++| +|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIP------KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCH------HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhh------hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 479999998764321 1234456677888853 58999999999999999999999887 59
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~ 311 (457)
|||||||+||||..+..++++++.++++|+|||+||||++++..||||++| ++|+|++.|+++++.+.
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 999999999999999999999888877899999999999998779999999 89999999999999754
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=335.82 Aligned_cols=197 Identities=18% Similarity=0.267 Sum_probs=149.9
Q ss_pred eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchhh
Q psy10858 94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHKT 162 (457)
Q Consensus 94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~~ 162 (457)
|++++|+.. ..+|++++ ++++||++||+||||||||||||+|+|+++|++|+|. +.|..+.......
T Consensus 82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 457888763 34677777 6999999999999999999999999999999999982 2232211100001
Q ss_pred hcCc--EEEEcCCCCCC------CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHH
Q psy10858 163 AGSK--VGYMPQELAMF------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 163 ~r~~--IGyvpQ~~~L~------~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsL 233 (457)
.... ..+.+|..... +..++.+++... .. ...+++.++++.+++.. .++++.+|||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---ME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH---CC----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh---hh----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 1122 23444433211 123555555321 11 12345778899999965 799999999999999999
Q ss_pred HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI 299 (457)
|+||+++|++|||||||+|||+..+..++++++.++++|+|||+|||+++++.. ||||++|++|..
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999998887889999999999999975 999999987653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-36 Score=324.04 Aligned_cols=194 Identities=19% Similarity=0.187 Sum_probs=148.9
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE-----------EEcCccCCCCchh
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-----------WVLGGHPASIYHK 161 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I-----------~i~G~~~~~~~~~ 161 (457)
++.+.+||.+.+ .|.++. .+++||++||+||||||||||||+|+|+++|++|+| .+.|.++......
T Consensus 3 ~~~~~~~~~~~f-~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVNGF-KLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTTSC-EEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCCce-eecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 357889997432 333333 245999999999999999999999999999999998 5666554211001
Q ss_pred --hhcCcEEEEcCCCCCC---CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858 162 --TAGSKVGYMPQELAMF---GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 162 --~~r~~IGyvpQ~~~L~---~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ 235 (457)
.....+...+|..... ...++.+++... ...++++++++.+++.. .++++.+|||||||||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~ 151 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAA 151 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1122355555554322 234788766421 11224567788999954 79999999999999999999
Q ss_pred HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR 298 (457)
Q Consensus 236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk 298 (457)
||+.+|++|||||||++||+..+..++++++.+++ |+|||+||||++++.. ||+|++|++|.
T Consensus 152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999888765 9999999999999975 99999998754
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.4e-35 Score=331.20 Aligned_cols=211 Identities=23% Similarity=0.328 Sum_probs=167.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCce-------------
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLK-------NISQG------------- 146 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll-------~p~sG------------- 146 (457)
..+++++++. .+|+||||+|++||++||+|+||||||||+++|. |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5799999862 3599999999999999999999999999999854 221 12233
Q ss_pred EEEEcCccCCCCch---h-------h---------hcCcEEEEcCCCCCCC-----------------------------
Q psy10858 147 EIWVLGGHPASIYH---K-------T---------AGSKVGYMPQELAMFG----------------------------- 178 (457)
Q Consensus 147 ~I~i~G~~~~~~~~---~-------~---------~r~~IGyvpQ~~~L~~----------------------------- 178 (457)
.|.++|.++..... . . ..+.+||++|.+++..
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 47788776642110 0 0 0134688888655421
Q ss_pred -------------------------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858 179 -------------------------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL 231 (457)
Q Consensus 179 -------------------------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl 231 (457)
.+||.|++.|+... .. ..+..++++.++|.. +++++.+|||||||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----hh--HHHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 35788888765432 11 223467889999954 6899999999999999
Q ss_pred HHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEe
Q psy10858 232 SFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQ 302 (457)
Q Consensus 232 sLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~ 302 (457)
+||+||+++| +||||||||+|||+..++.++++++.++++|.|||++|||++++..||||++| ++|+|++.
T Consensus 855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 9999999875 99999999999999999999999888888899999999999998779999999 79999999
Q ss_pred cChhhhhhc
Q psy10858 303 DSPDGFKSK 311 (457)
Q Consensus 303 gs~~~l~~~ 311 (457)
|+++++...
T Consensus 935 g~~~el~~~ 943 (972)
T 2r6f_A 935 GTPEEVAEV 943 (972)
T ss_dssp ESHHHHHTC
T ss_pred cCHHHHHhC
Confidence 999999764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.2e-35 Score=329.85 Aligned_cols=212 Identities=23% Similarity=0.297 Sum_probs=163.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC---------------
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA-IVGLK-------NI--------------- 143 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~-L~Gll-------~p--------------- 143 (457)
...|+++|+++ . +|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~--~-----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 500 AGWLELNGVTR--N-----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp SCEEEEEEEEE--T-----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred CceEEEEeeee--c-----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35799999975 1 4999999999999999999999999999997 77553 23
Q ss_pred ---Cce-------EEEEcCccCCCCchh----------hh---------cCcEEEEcCCCCC------------------
Q psy10858 144 ---SQG-------EIWVLGGHPASIYHK----------TA---------GSKVGYMPQELAM------------------ 176 (457)
Q Consensus 144 ---~sG-------~I~i~G~~~~~~~~~----------~~---------r~~IGyvpQ~~~L------------------ 176 (457)
.+| .|.++|.++...... .. .+.+||.++.+++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 688888766432110 00 0122343332211
Q ss_pred ----C------------------------CC--------CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCC
Q psy10858 177 ----F------------------------GE--------LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LER 218 (457)
Q Consensus 177 ----~------------------------~~--------lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~ 218 (457)
+ .. +|+.|++.++.. .. ..+++.++++.++|.. +++
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~----~~--~~~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD----ES--AIFRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT----SH--HHHHHHHHHHHTTCTTSBTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc----ch--HHHHHHHHHHHcCCCcccccC
Confidence 1 12 345555444321 11 1246778899999964 589
Q ss_pred CCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE-
Q psy10858 219 PVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL- 294 (457)
Q Consensus 219 ~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im- 294 (457)
++.+|||||||||+||+||+++ |+||||||||+|||+..++.++++++.++++|.|||++|||++++..||||++|
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 9999999999999999999996 799999999999999999999999888888899999999999999679999999
Q ss_pred -----eCCeEEEecChhhhhhc
Q psy10858 295 -----YKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 295 -----~~GkI~~~gs~~~l~~~ 311 (457)
++|+|++.|+++++.+.
T Consensus 807 p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 807 PGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp SSSGGGCCSEEEEECHHHHTTC
T ss_pred CCCCCCCCEEEEEcCHHHHHhC
Confidence 79999999999998765
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-34 Score=320.50 Aligned_cols=211 Identities=24% Similarity=0.356 Sum_probs=163.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCCc------e------EEEEcCccCCCCch--
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL---------KAIVGLKNISQ------G------EIWVLGGHPASIYH-- 160 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL---------k~L~Gll~p~s------G------~I~i~G~~~~~~~~-- 160 (457)
..+|+||||+|++|+++||+|+||||||||+ +++.|...+.. | .+.++..++.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3469999999999999999999999999997 45555443332 2 24444333321100
Q ss_pred ---------------------------------------hhhcCcEEEEcCCCCCCC-----------------------
Q psy10858 161 ---------------------------------------KTAGSKVGYMPQELAMFG----------------------- 178 (457)
Q Consensus 161 ---------------------------------------~~~r~~IGyvpQ~~~L~~----------------------- 178 (457)
-......||++|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 001134678888776654
Q ss_pred ---------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ceE
Q psy10858 179 ---------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QLI 244 (457)
Q Consensus 179 ---------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~lL 244 (457)
.+||.|++.|+.... ...+..++++.++|.. +++++.+|||||||||+|||||+++| +||
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~~------~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNIP------SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTCH------HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcch------hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 368888888764321 2345667889999953 68999999999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHH
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLS 318 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~ 318 (457)
||||||+|||+..++.++++++.++++|.|||+||||++++..||+|++| ++|+|++.|+|+++.+.. ....
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~--~syt 908 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP--HSYT 908 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT--TCHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC--chHH
Confidence 99999999999999999999888888899999999999999889999999 899999999999998753 3344
Q ss_pred HHHH
Q psy10858 319 DVFY 322 (457)
Q Consensus 319 ~~f~ 322 (457)
..|+
T Consensus 909 ~~~l 912 (916)
T 3pih_A 909 GRFL 912 (916)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.9e-34 Score=324.78 Aligned_cols=221 Identities=20% Similarity=0.299 Sum_probs=168.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-c----CCC---CCceE------------
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV-G----LKN---ISQGE------------ 147 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-G----ll~---p~sG~------------ 147 (457)
..+++++++. .+|+||||+|++||++||+|+||||||||+++|. | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 5799999852 2599999999999999999999999999999853 2 221 23443
Q ss_pred -EEEcCccCCCCch---h-------h---------hcCcEEEEcCCCCCCC-----------------------------
Q psy10858 148 -IWVLGGHPASIYH---K-------T---------AGSKVGYMPQELAMFG----------------------------- 178 (457)
Q Consensus 148 -I~i~G~~~~~~~~---~-------~---------~r~~IGyvpQ~~~L~~----------------------------- 178 (457)
|.+++.++..... . . ..+.+||++|.+++..
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 4455544421100 0 0 0134688888654321
Q ss_pred -------------------------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858 179 -------------------------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL 231 (457)
Q Consensus 179 -------------------------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl 231 (457)
.+||.|++.|+... .. ..+..++++.++|.. +++++.+|||||||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv 872 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI----AG--VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRV 872 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC----HH--HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc----hH--HHHHHHHHHHcCCCcccccCccccCCHHHHHHH
Confidence 35777777765432 11 233467889999953 6899999999999999
Q ss_pred HHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEe
Q psy10858 232 SFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQ 302 (457)
Q Consensus 232 sLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~ 302 (457)
+||+||+++| +||||||||+|||+..++.++++++.++++|.|||++|||++++..||||++| ++|+|++.
T Consensus 873 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 873 KLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp HHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 9999999875 99999999999999999999999888878899999999999998779999999 79999999
Q ss_pred cChhhhhhcCCcccHHHHHHh
Q psy10858 303 DSPDGFKSKYSMPKLSDVFYK 323 (457)
Q Consensus 303 gs~~~l~~~~~~~~l~~~f~~ 323 (457)
|+++++.... ......|+.
T Consensus 953 G~~~el~~~~--~~~t~~~l~ 971 (993)
T 2ygr_A 953 GTPEDVAAVP--ASYTGKFLA 971 (993)
T ss_dssp ECHHHHHHCT--TCHHHHHHG
T ss_pred cCHHHHHhCC--HHHHHHHHH
Confidence 9999997653 244555553
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-38 Score=328.97 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=161.5
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-E-EEEcCccCCCCchhhhc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-E-IWVLGGHPASIYHKTAG 164 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~-I~i~G~~~~~~~~~~~r 164 (457)
.++++++|++++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .+
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQ 178 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TT
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------cc
Confidence 46899999999986 69999999999999999999999999999999999999 9 999872 24
Q ss_pred CcEEEEcCCCC---CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH--hh
Q psy10858 165 SKVGYMPQELA---MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA--IL 238 (457)
Q Consensus 165 ~~IGyvpQ~~~---L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A--Ll 238 (457)
+.++|+||+.. ++..+|++||+ ++... .+... .+++..+++.+++..... +.+|||||||||++||| |+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc
Confidence 67999999985 34567999998 65432 22111 123445677778755322 88999999999999999 99
Q ss_pred cCCce----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh------HHhc-cCe-----EEEEe-CCeEE
Q psy10858 239 HKPQL----IILDE-PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE------EAND-ASE-----VAFLY-KGRII 300 (457)
Q Consensus 239 ~~P~l----LILDE-PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~------ea~~-~dr-----i~im~-~GkI~ 300 (457)
.+|++ ||||| ||++||+. ++.++++++. .|+|+|++||+.+ ++.. ||| |++|+ +|+++
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 99999 99999 99999999 6666666543 4789999999988 7754 899 99999 99999
Q ss_pred EecChhhhh
Q psy10858 301 AQDSPDGFK 309 (457)
Q Consensus 301 ~~gs~~~l~ 309 (457)
.|+++++.
T Consensus 330 -~g~~~~~~ 337 (460)
T 2npi_A 330 -AVDDVYKR 337 (460)
T ss_dssp -CCCHHHHH
T ss_pred -ECCHHHHh
Confidence 99998874
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=6.8e-33 Score=284.60 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=147.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--------------------------------------ISQ 145 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--------------------------------------p~s 145 (457)
+.++++++|++.+| +++|+|||||||||||++|.++.. +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45699999999999 999999999999999999987764 457
Q ss_pred eEEEEcCccCCCCchhhh-cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-----------------------------
Q psy10858 146 GEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGELTIKETLNFFGMIYGM----------------------------- 195 (457)
Q Consensus 146 G~I~i~G~~~~~~~~~~~-r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~----------------------------- 195 (457)
|+++++|+++........ +..+++++|+..++.. +..++..+.-.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999988753222222 3458999999876543 554444332111000
Q ss_pred -C------------------------------HHHHHHHHHHHHhHcCCCCC----------------------------
Q psy10858 196 -D------------------------------ESIWLFQMRKYSHVLKLPNL---------------------------- 216 (457)
Q Consensus 196 -~------------------------------~~~~~~~~~~ll~~l~L~~~---------------------------- 216 (457)
. .......+.+.++.++++..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 00112233444555544210
Q ss_pred ---CCCCCC-CChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 217 ---ERPVKY-LSGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 217 ---~~~~~~-LSGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
.+++.. |||||||||+||++|+.+| ++|||||||+|||+..+..++++++.+. +|.|||+|||+++.+..|||
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~ 364 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHH 364 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCe
Confidence 033333 5999999999999999999 9999999999999999999999988876 59999999999988877999
Q ss_pred EEEE----eCCeEEEec
Q psy10858 291 VAFL----YKGRIIAQD 303 (457)
Q Consensus 291 i~im----~~GkI~~~g 303 (457)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 9999 999987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=4.8e-30 Score=262.47 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=79.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhh------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAIL------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~ALl------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
++++.+|||||||||+||+||+ ++|++|||||||+||||..++.++++++.+.+.|.|||+|||+++++..|||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 5788999999999999999999 7999999999999999999999999988887789999999999999777999
Q ss_pred EEEEeCCeEEE
Q psy10858 291 VAFLYKGRIIA 301 (457)
Q Consensus 291 i~im~~GkI~~ 301 (457)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999875
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=1.5e-33 Score=267.91 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=105.6
Q ss_pred EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176 (457)
Q Consensus 97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L 176 (457)
|+|++ +.+|+|| ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. .....++.+||+||++
T Consensus 8 k~~g~--~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQ--KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHH--HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC----
T ss_pred CCHhH--HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH--
Confidence 34665 7799996 89999999999999999999999999 999999943 22211 1112457899999986
Q ss_pred CCCCCHHHHH-HHhh----hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 177 FGELTIKETL-NFFG----MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 177 ~~~lTV~EnL-~~~~----~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
+||+ .+.. .+.+... .+++.++++. ++ ||||||+|||||+++|++|||||||+
T Consensus 76 ------~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ----------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred ------HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3444 2211 1111110 1234444443 22 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858 252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287 (457)
Q Consensus 252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~ 287 (457)
| +++.++++++.+ ++|+||| +|||+++++.
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 9 899999998777 6799999 9999987764
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=1.9e-30 Score=237.36 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=105.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC-CCCCHHHHHH
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF-GELTIKETLN 187 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~-~~lTV~EnL~ 187 (457)
||||+|++||+++|+||||||||||+|++.+ |...+.+ ... .|+++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~--------d~~---~g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS--------DFC---RGLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH--------HHH---HHHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc--------HHH---HHHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999998653 2111211 111 26777765311 0011222221
Q ss_pred HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH-----------
Q psy10858 188 FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----------- 256 (457)
Q Consensus 188 ~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~----------- 256 (457)
......+ ..+...........|||||||++||+|++.+|++|+|||||++||+.
T Consensus 64 --------------~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~ 128 (171)
T 4gp7_A 64 --------------YIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE 128 (171)
T ss_dssp --------------HHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred --------------HHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence 1111111 23332221234556999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 257 -----VRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 257 -----~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
.++.+++.++.++++|.|+|++|||++++..++++
T Consensus 129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66888988766666699999999999999876554
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=4e-29 Score=250.63 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=126.0
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----------------------------------------------
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----------------------------------------------- 141 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll----------------------------------------------- 141 (457)
+++|++.+| +.+|+||||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999999554
Q ss_pred ---CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh------------hcCC-CHHHHHH---
Q psy10858 142 ---NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM------------IYGM-DESIWLF--- 202 (457)
Q Consensus 142 ---~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~------------l~g~-~~~~~~~--- 202 (457)
.+.+|.++++|.+............+|+.||+..++..-++.+++..... +... ..+.+.+
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 23357888888765322222333456666665554432233333211000 0000 0000111
Q ss_pred ------------------HHHHHHhH-cCC----CC-CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCC
Q psy10858 203 ------------------QMRKYSHV-LKL----PN-LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVD 254 (457)
Q Consensus 203 ------------------~~~~ll~~-l~L----~~-~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLD 254 (457)
+...+++. +++ +. .++++.+||||||||++||+||+ .+|++|||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 11112221 111 12 46778999999999999999997 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE--EEEeCCeE
Q psy10858 255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV--AFLYKGRI 299 (457)
Q Consensus 255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri--~im~~GkI 299 (457)
+..++.++++++.+ .+|.|||+|||+++....||++ ++|.+|..
T Consensus 256 ~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 256 DYNAERFKRLLKEN-SKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHHHHHHHHHH-TTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 99999999998876 4589999999997656679986 78888764
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.95 E-value=6.2e-32 Score=253.58 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=124.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..+++| .+|++||+++|+||||||||||+|+|+|+++. |.+.+...........++.+||+||++.+|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 567888 79999999999999999999999999999963 444332111111112346799999999888888888
Q ss_pred HHHHHh----h--hhcCCCHHHHHHHHHHH------HhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858 184 ETLNFF----G--MIYGMDESIWLFQMRKY------SHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC 250 (457)
Q Consensus 184 EnL~~~----~--~l~g~~~~~~~~~~~~l------l~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT 250 (457)
+++..+ . ..++.+.++..+++.+. ++.+++.. .++++.+|| ||+.+|++++|||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 876432 2 34566666666666665 44555532 466778888 999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858 251 VGV----DPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY 295 (457)
Q Consensus 251 sGL----Dp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~ 295 (457)
+|+ |+..++.++++++.+. +.|.|||++|||++++.. ||||++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 8899999999977765 458999999999999975 99999884
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=4.9e-31 Score=274.43 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=141.2
Q ss_pred ceeEeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh
Q psy10858 104 NVVLNNCSLVVKRRE--------------------FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 104 ~~aL~~vs~~I~~Ge--------------------i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~ 163 (457)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 568999999999999 99999999999999999999999999999999876432
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh--HHHHHHHHHHhhc--
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG--QKRRLSFTIAILH-- 239 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG--qkQRlsLA~ALl~-- 239 (457)
+ .+|++|++ .++.+|+.|++.++.. ..++.++++.+++...+..+. ||+| ||||++||+||++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~ 175 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMK 175 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred e--eEEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcC
Confidence 1 27899985 5778899988755421 123567788888865444444 9999 9999999999999
Q ss_pred --------CCceEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEcCChhH--Hhc-cCeEE-EEeCCe
Q psy10858 240 --------KPQLIILDEPCVGVDPLVRKRMWDLLQVFV-----GK----GRTVIMTTQYIEE--AND-ASEVA-FLYKGR 298 (457)
Q Consensus 240 --------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-----~~----g~TIIisTH~~~e--a~~-~dri~-im~~Gk 298 (457)
+|++++|||||+||||..++++++.++.+. +. ..+|+++||++++ ++. ||++. .|..|+
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 999999999999999999999999976653 33 3678999999987 665 78764 444443
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=1.5e-28 Score=227.73 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=106.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES 198 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~ 198 (457)
.++|+||||||||||+|+|+|++. |.++|...........++++||++|+. ++.+++ .+.+ +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~-~~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK-FFTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET-TCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh-cCCc-
Confidence 589999999999999999999985 445554431111012356899999986 222222 1111 1000
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH-----hhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHHhC
Q psy10858 199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA-----ILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFVGK 271 (457)
Q Consensus 199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A-----Ll~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~~~ 271 (457)
-...++++.+||||||||++||+| |+.+|++||||| ||++||+..++.++++++. .
T Consensus 67 --------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~ 129 (178)
T 1ye8_A 67 --------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---P 129 (178)
T ss_dssp --------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---T
T ss_pred --------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---C
Confidence 012577889999999999999996 999999999999 9999999999999988754 5
Q ss_pred CcEEEEEc---CChhHHhc-cCeEEEEeCCeEEE
Q psy10858 272 GRTVIMTT---QYIEEAND-ASEVAFLYKGRIIA 301 (457)
Q Consensus 272 g~TIIisT---H~~~ea~~-~dri~im~~GkI~~ 301 (457)
+.|+|++| |++++++. |+| .+|+++.
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 77788888 58888875 787 4566655
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=6.9e-31 Score=263.44 Aligned_cols=162 Identities=12% Similarity=0.151 Sum_probs=127.8
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+|+++||+++|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------S 156 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------C
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------E
Confidence 588999999997 46899999999999999999999999999999999999 79884 3
Q ss_pred EEcCCCCCCCCCCHHH-HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858 169 YMPQELAMFGELTIKE-TLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 169 yvpQ~~~L~~~lTV~E-nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL 246 (457)
|++|++.+|.. |+++ |+.+... .+. .+.+.++.+ |+. ++ +.+|||||||| ||||+.+|+|||
T Consensus 157 ~v~q~~~lf~~-ti~~~ni~~~~~---~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl- 220 (305)
T 2v9p_A 157 FANHKSHFWLA-SLADTRAALVDD---ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV- 220 (305)
T ss_dssp GGGTTSGGGGG-GGTTCSCEEEEE---ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred EecCccccccc-cHHHHhhccCcc---ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence 45666666653 6665 6654311 111 223334432 332 34 78999999999 999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l 308 (457)
||+||+.+++.++. .||+++.+..||+| +|++|++++.|+++++
T Consensus 221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 ---TSNIDVQAEDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---EESSCSTTCGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ---ECCCCHHHHHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999999988762 19999888789999 9999999999999987
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-29 Score=264.33 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=159.9
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCC-----
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASI----- 158 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~----- 158 (457)
.++++++++++.|+.+ ..||+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.+.|+ ++...
T Consensus 129 ~~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 3579999999999732 6799999 999999999999999999999999999999999999999997 33221
Q ss_pred chhhhcCcEEEEcCC-CCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy10858 159 YHKTAGSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 159 ~~~~~r~~IGyvpQ~-~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL 237 (457)
.....++.++|++|+ ..+++.+|+.+|+.+.+..++... ..++.. ++ .+..||+|| |||+||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~~v~~~-----ld-~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------QHVLLI-----MD-SLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------CEEEEE-----EE-CHHHHHHHH-HHHHHH---
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCHHHH-----HH-hHHHHHHHH-HHHHHH---
Confidence 112356789999995 566778899999987665432100 001111 12 267799999 999999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---K-GR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~---~-g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l 308 (457)
+.+|++ |+||||..+..++++++.+.+ + |. ||+++|||++ ...||++++|.+|+|+.+++++++
T Consensus 270 l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 270 IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHc
Confidence 889998 999999999999999877655 3 74 9999999999 555999999999999999998887
Q ss_pred hh
Q psy10858 309 KS 310 (457)
Q Consensus 309 ~~ 310 (457)
..
T Consensus 343 ~~ 344 (438)
T 2dpy_A 343 GH 344 (438)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=6.2e-28 Score=241.36 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=139.1
Q ss_pred eEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEE
Q psy10858 95 TEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVG 168 (457)
Q Consensus 95 lsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IG 168 (457)
+.+.++. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .. .+..|+
T Consensus 80 l~~~l~~--~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~ 157 (302)
T 3b9q_A 80 VLEMLAK--KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE 157 (302)
T ss_dssp HHHHHCC----CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhCC--cccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce
Confidence 3344444 334568999999999999999999999999999999999999999999988754210 11 134699
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc--eE
Q psy10858 169 YMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ--LI 244 (457)
Q Consensus 169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~--lL 244 (457)
|++|++. +++.+|++|++.+... .+.. ..+++.+++.+ .++++.+|| |||++||+||+++|+ +|
T Consensus 158 ~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 158 IVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp EECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred EEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE
Confidence 9999998 8888999999986432 2211 12355666643 467788999 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcC---------ChhHHhc-cCeEEEEeCCeE
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQ---------YIEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH---------~~~ea~~-~dri~im~~GkI 299 (457)
+|| ||+|||+..+. +.+. +.|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 226 vLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 99999998653 2222 45899999999 3344433 578999999874
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=1.8e-29 Score=239.86 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=114.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
...|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+...... ...+..++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 34699999999999999999999999999999999999 5 99999 876543211 1234679999999877665431
Q ss_pred -HHHHH---HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHH-----HHHhhcCCceEEEeCCCCCC
Q psy10858 183 -KETLN---FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF-----TIAILHKPQLIILDEPCVGV 253 (457)
Q Consensus 183 -~EnL~---~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsL-----A~ALl~~P~lLILDEPTsGL 253 (457)
.+++. +....+|.+.. .++++++...+...+ .+|||||+||+++ |++++..|++++|||||+++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~----~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKS----EYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHH----HHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred ccchhhhhhcccccCCCcHH----HHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 12221 22233444433 234444433321122 5799999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-------CCcEEEEEcCChhHHhc-cCeE
Q psy10858 254 DPLVRKRMWDLLQVFVG-------KGRTVIMTTQYIEEAND-ASEV 291 (457)
Q Consensus 254 Dp~~r~~i~~~i~~~~~-------~g~TIIisTH~~~ea~~-~dri 291 (457)
|......+.+.+....+ .+.+.|+++|+++++.. ++++
T Consensus 159 d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 99888888877655432 34556666677666532 4443
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.91 E-value=2.3e-26 Score=235.40 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=136.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEEEEcCCCC-CCCCC
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVGYMPQELA-MFGEL 180 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IGyvpQ~~~-L~~~l 180 (457)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .. .+..|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 57899999999999999999999999999999999999999999988754210 11 2357999999998 88889
Q ss_pred CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHH
Q psy10858 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLV 257 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~ 257 (457)
|+++++.+... .+.. ..+++.+++.+ .++++.+|| |||++|||||+++|+ +|+|| ||+|+|+..
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999986532 2211 12355666644 467788899 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHHHhCCcEEEEEcCC---------hhHHhc-cCeEEEEeCCeE
Q psy10858 258 RKRMWDLLQVFVGKGRTVIMTTQY---------IEEAND-ASEVAFLYKGRI 299 (457)
Q Consensus 258 r~~i~~~i~~~~~~g~TIIisTH~---------~~ea~~-~dri~im~~GkI 299 (457)
+.. ....+.|.|+|++||. ++.+.. ...|.++..|+.
T Consensus 295 ~~~-----~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QAR-----EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHH-----HHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH-----HHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 532 1222458999999993 334433 578999988864
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.91 E-value=5.4e-26 Score=231.52 Aligned_cols=197 Identities=15% Similarity=0.103 Sum_probs=147.1
Q ss_pred cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC-------Cc
Q psy10858 87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-------IY 159 (457)
Q Consensus 87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~-------~~ 159 (457)
.++++++++++.|+.+ ..||+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|++... ..
T Consensus 43 ~~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp SCSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 3579999999999832 7899999 9999999999999999999999999999999999999998865211 01
Q ss_pred hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHHHHh
Q psy10858 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA~AL 237 (457)
.....+.+++++|... +..+.+...... ..+.+.....+-. ..-..+..||+|| |||++|
T Consensus 121 ~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp HHHHTTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hhhhhceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 1123466888887532 233333211000 0011111111100 0114578899999 899999
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~--~g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
+++|++ |+|+||..+..++++++.+.+ .|. ||+++|||++ ...||++++|.+|+|+.+++++++..
T Consensus 183 l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 183 SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 688888 999999999999999888753 587 9999999999 34599999999999999999887653
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=2.2e-28 Score=245.71 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=140.0
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLV-----------------------VKRREFFVLLGASSAGKTTLLKAIVGLKNIS 144 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~-----------------------I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~ 144 (457)
.+|++++|++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 4689999999995 355666654 8999999999999999999999999999997
Q ss_pred ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCC
Q psy10858 145 QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS 224 (457)
Q Consensus 145 sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LS 224 (457)
.|. ++++|++|++.+++. |++||+.+.. .++.+.....+++.++++.++-...+.++.+||
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS 178 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred CCC-----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCC
Confidence 552 469999999998888 9999986532 235544333455667777776322457788999
Q ss_pred hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-c-cCeEEEEeCCeEEEe
Q psy10858 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-D-ASEVAFLYKGRIIAQ 302 (457)
Q Consensus 225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~-~dri~im~~GkI~~~ 302 (457)
|||+||+++|+|++.+|+|||||||++.+|+.. .. +.. .-+. +|+++|+.+.+. . .+|...|++|+-
T Consensus 179 ~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~--~~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~~--- 247 (312)
T 3aez_A 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSD--LFDF-SLYVDARIEDIEQWYVSRFLAMRTTAF--- 247 (312)
T ss_dssp TTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGG--GCSE-EEEEEECHHHHHHHHHHHHHHHTTTGG---
T ss_pred hhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHH--hcCc-EEEEECCHHHHHHHHHHHHHHHHhccc---
Confidence 999999999999999999999999999998621 11 111 1234 466677777653 3 677666666652
Q ss_pred cChhhhhhc
Q psy10858 303 DSPDGFKSK 311 (457)
Q Consensus 303 gs~~~l~~~ 311 (457)
.+|+..+.+
T Consensus 248 r~~~~~~~~ 256 (312)
T 3aez_A 248 ADPESHFHH 256 (312)
T ss_dssp GSTTSTTGG
T ss_pred cCcchhhhc
Confidence 344444443
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=5.1e-24 Score=218.00 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=77.8
Q ss_pred CCCCC-CCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858 217 ERPVK-YLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 217 ~~~~~-~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~ 286 (457)
+++++ .||||||||++||++|+ ++|+||||||||++||+..+..+++.+..+. .|+|++|| +++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc--
Confidence 45677 79999999999999999 8999999999999999999999999987652 79999999 454
Q ss_pred ccCeEEEEeCCeEEEecChhhh
Q psy10858 287 DASEVAFLYKGRIIAQDSPDGF 308 (457)
Q Consensus 287 ~~dri~im~~GkI~~~gs~~~l 308 (457)
.||++++|++|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999999876
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.90 E-value=7.7e-27 Score=229.78 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=98.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES 198 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~ 198 (457)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+||++|++.+++.+||.||+.|+....+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence 378999999999999999999999999999999987643 234578999999999999999999998865544321
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy10858 199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278 (457)
Q Consensus 199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIis 278 (457)
..+.+.+++.. ...+..+.+||||||||+++|||++. +++||||++|||+.. +++++.+.+. ++||++
T Consensus 79 -~~~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~V 146 (270)
T 3sop_A 79 -CWEPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPV 146 (270)
T ss_dssp -CSHHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEE
T ss_pred -HHHHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEE
Confidence 11122222210 11345678999999999999999886 999999999999987 3444444455 888888
Q ss_pred cCChhHH
Q psy10858 279 TQYIEEA 285 (457)
Q Consensus 279 TH~~~ea 285 (457)
.|..+.+
T Consensus 147 i~K~D~l 153 (270)
T 3sop_A 147 IAKADTM 153 (270)
T ss_dssp ETTGGGS
T ss_pred EeccccC
Confidence 8876543
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.90 E-value=3.8e-23 Score=208.73 Aligned_cols=79 Identities=29% Similarity=0.489 Sum_probs=71.1
Q ss_pred CCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 217 ~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
++++.+||||||| |+++|+||+.+|++|||||||+||||..+..++++++.+.++|.|||+|||+.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5688999999999 6788889999999999999999999999999999988776778999999999765566999
Q ss_pred EEEEe
Q psy10858 291 VAFLY 295 (457)
Q Consensus 291 i~im~ 295 (457)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.90 E-value=3.8e-25 Score=252.24 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=125.9
Q ss_pred cCceEEEe-----eEEEe-CCCCceeEeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc
Q psy10858 87 EEADEGKN-----TEKEE-LKPSNVVLNNCSLVVKR-------REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG 153 (457)
Q Consensus 87 ~~~Iei~n-----lsk~y-g~~~~~aL~~vs~~I~~-------Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~ 153 (457)
..+|++++ |++.| ++ ..+++|++|++++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred CceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 35799999 99999 55 7899999999987 999999999999999999999 99863
Q ss_pred cCCCCchhhhcCcEE-EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHH
Q psy10858 154 HPASIYHKTAGSKVG-YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRL 231 (457)
Q Consensus 154 ~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRl 231 (457)
..++| ||||+.. .+||.+++. . .+++. ...+..+++|+++++ +
T Consensus 815 ----------~aqiG~~Vpq~~~---~l~v~d~I~--~-------------------rig~~d~~~~~~stf~~em~~-~ 859 (1022)
T 2o8b_B 815 ----------MAQMGCYVPAEVC---RLTPIDRVF--T-------------------RLGASDRIMSGESTFFVELSE-T 859 (1022)
T ss_dssp ----------HHTTTCCEESSEE---EECCCSBEE--E-------------------ECC---------CHHHHHHHH-H
T ss_pred ----------HhheeEEeccCcC---CCCHHHHHH--H-------------------HcCCHHHHhhchhhhHHHHHH-H
Confidence 12356 9999863 456655541 1 12221 123345678888876 9
Q ss_pred HHHHHhhcCCceEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEE--EecChh
Q psy10858 232 SFTIAILHKPQLIILDEPCVGVDPLVR-KRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRII--AQDSPD 306 (457)
Q Consensus 232 sLA~ALl~~P~lLILDEPTsGLDp~~r-~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~--~~gs~~ 306 (457)
++|++++++|+++||||||+|+|+... ..+|.+++.+.++ |.++|++||+++++.. +|++.++ +|++. ..|+++
T Consensus 860 a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 860 ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC------
T ss_pred HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCcc
Confidence 999999999999999999999999985 5578888887766 9999999999999975 8998886 58887 445543
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=1.4e-25 Score=226.62 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=110.8
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET 185 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En 185 (457)
+++++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|.+.... ...++.++|++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KHHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SSCSSEEEEECB-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--ccchhEEEEEeC-------------
Confidence 78999999999999999999999999999999999999999999998642211 113455666641
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858 186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265 (457)
Q Consensus 186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i 265 (457)
|||+||++||+||..+|++|||||||+ .++++++
T Consensus 225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l 258 (330)
T 2pt7_A 225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY 258 (330)
T ss_dssp ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence 899999999999999999999999998 2466777
Q ss_pred HHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858 266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299 (457)
Q Consensus 266 ~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI 299 (457)
+.+...+.|+|+|||+++....|||+++|.+|..
T Consensus 259 ~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 7665545689999999995566999999988753
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=7.2e-25 Score=215.66 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=124.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ....++++.++.|...+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---VEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---HHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---HHHHHHHHHHHHcCCCh----hh
Confidence 4579999999999999999999999999999999999999888 7766554432 22233445555554332 22
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH-HHHHHHHHHhhcCCceEEEeCCCC---C---CCH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ-KRRLSFTIAILHKPQLIILDEPCV---G---VDP 255 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq-kQRlsLA~ALl~~P~lLILDEPTs---G---LDp 255 (457)
.+++... . ++.++..+.+.++++...+. ....+.++|.++ +||+. |+|+.++|++||+||||+ + +|+
T Consensus 95 ~~~l~~~-~---~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~ 168 (296)
T 1cr0_A 95 SDSLKRE-I---IENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE 168 (296)
T ss_dssp CHHHHHH-H---HHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred ccccccC-C---CCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence 3344322 1 12233344444444332321 233456789998 66776 999999999999999999 5 565
Q ss_pred -HHHHHHHHHHHHHH-hCCcEEEEEcCCh--h--------------------HHhc-cCeEEEEeCCeE
Q psy10858 256 -LVRKRMWDLLQVFV-GKGRTVIMTTQYI--E--------------------EAND-ASEVAFLYKGRI 299 (457)
Q Consensus 256 -~~r~~i~~~i~~~~-~~g~TIIisTH~~--~--------------------ea~~-~dri~im~~GkI 299 (457)
.....+++.++.++ +.|+|||++||+. + .++. ||+|++|++|+.
T Consensus 169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 66778888876664 4599999999995 5 5554 999999999875
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=3e-27 Score=251.94 Aligned_cols=182 Identities=18% Similarity=0.128 Sum_probs=128.6
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKA--IVGLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~--L~Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
.+++.+++.+..++ ..+|++||| .|++||+++|+||||||||||+++ ++|+++|++|.|+++|.+... .....+
T Consensus 11 ~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~-~~~~~~ 87 (525)
T 1tf7_A 11 NNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ-DIIKNA 87 (525)
T ss_dssp ---CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred CCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHH
Confidence 35666667666666 789999999 999999999999999999999999 789999999999999977321 122334
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCCce
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKPQL 243 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P~l 243 (457)
+.+||++|++...+. +.+ ..... .. ........+..++ +.-.++.+|. .+|++
T Consensus 88 ~~~g~~~q~~~~~~~------l~~-~~~~~-~~-----------------~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~ 141 (525)
T 1tf7_A 88 RSFGWDLAKLVDEGK------LFI-LDASP-DP-----------------EGQEVVGGFDLSA-LIERINYAIQKYRARR 141 (525)
T ss_dssp GGGTCCHHHHHHTTS------EEE-EECCC-CS-----------------SCCSCCSSHHHHH-HHHHHHHHHHHHTCSE
T ss_pred HHcCCChHHhhccCc------EEE-EecCc-cc-----------------chhhhhcccCHHH-HHHHHHHHHHHcCCCE
Confidence 678999998653211 110 00000 00 0001112222222 2333344442 46899
Q ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH---------hc-cCeEEEEeCCe
Q psy10858 244 IILDEPCV-----GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA---------ND-ASEVAFLYKGR 298 (457)
Q Consensus 244 LILDEPTs-----GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea---------~~-~dri~im~~Gk 298 (457)
++|||||+ ++|+..++.++++++.+++.|+|||++||+++++ +. ||+|++|++|+
T Consensus 142 lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 142 VSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp EEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred EEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 99999998 4699999999999888877899999999999984 45 99999999843
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=4.9e-24 Score=227.20 Aligned_cols=153 Identities=14% Similarity=0.053 Sum_probs=120.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
+..|++|++++|+|+||||||||+++++|+..++ |+ +-+.|.+|++. .++.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~----~~l~~~~---- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR----AQLLRNA---- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH----HHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH----HHHHHHH----
Confidence 4589999999999999999999999999998874 43 11445566541 1222322
Q ss_pred hhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH-----HHHHHHHH
Q psy10858 191 MIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-----VRKRMWDL 264 (457)
Q Consensus 191 ~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~-----~r~~i~~~ 264 (457)
..++++.+ ++ ...++. ..+..+.+|||||+||+++|+++..+|++||+| ||+|||+. .++.++++
T Consensus 329 ~~~g~~~~-------~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 329 YSWGMDFE-------EM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp HTTSCCHH-------HH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred HHcCCCHH-------HH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 12344321 11 123442 257788999999999999999999999999999 99999999 99999999
Q ss_pred HHHHHhCCcEEEEEcCCh----------hHHhc-cCeEEEEeCCe
Q psy10858 265 LQVFVGKGRTVIMTTQYI----------EEAND-ASEVAFLYKGR 298 (457)
Q Consensus 265 i~~~~~~g~TIIisTH~~----------~ea~~-~dri~im~~Gk 298 (457)
++.+++.|+|||++||++ +++.. ||+|++|++|+
T Consensus 400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 888888899999999999 66765 89999999887
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=8.3e-24 Score=238.34 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=131.8
Q ss_pred HHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC----------HHHHH
Q psy10858 132 TLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----------ESIWL 201 (457)
Q Consensus 132 TLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~----------~~~~~ 201 (457)
|...|..+.+.|.+|+|.++|+++.. +..+|+.+++.+...+ +++ .++..
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~-------------------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~ 442 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE-------------------FTELSISEELEFLKNL-NLTEREREIVGELLKEIE 442 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH-------------------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH-------------------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHH
Confidence 34456677789999999999876522 2335666666653322 111 11222
Q ss_pred HHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858 202 FQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277 (457)
Q Consensus 202 ~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi 277 (457)
+ ..+.+..++|.. +++++.+|||||||||+||+||+.+|+ +|||||||+||||..++.++++++.++++|.|||+
T Consensus 443 ~-~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 443 K-RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp H-HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred H-HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2 345677788864 689999999999999999999999887 99999999999999999999999888888999999
Q ss_pred EcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858 278 TTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY 322 (457)
Q Consensus 278 sTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~ 322 (457)
||||++++..||+|++| ++|++++.|+++++.+.... .+...|.
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~-~~~~~~l 571 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDS-SLTGEYL 571 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCTT-CHHHHHH
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCchh-cchhhhh
Confidence 99999998889999999 99999999999999865321 3444444
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=5.7e-25 Score=211.49 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=114.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCHh
Confidence 78999999999999999999999999999999999976 444332 2357899999995 78889999
Q ss_pred HHHHHhhhhcCCCH--HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261 (457)
Q Consensus 184 EnL~~~~~l~g~~~--~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i 261 (457)
+++.+....++... ....+.+.+.++.+. ...++++..||+||+||+++ ++++.+|+++|||||....|+. +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l 150 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I 150 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H
Confidence 99877654443321 111223333444331 23567889999999999988 5888999999999999888864 2
Q ss_pred HHHHHHHHhCCcEEEEEcCChhHH-hc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 262 WDLLQVFVGKGRTVIMTTQYIEEA-ND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 262 ~~~i~~~~~~g~TIIisTH~~~ea-~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+++ .+.+|+++||+...+ +. ++++ ++|+ +++++.+.
T Consensus 151 ~~~------~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 151 RDM------FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp HTT------CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred HHh------cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 211 378999999985444 44 4444 6664 56666543
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.88 E-value=6.9e-23 Score=217.94 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCCCCC-ChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 218 RPVKYL-SGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 218 ~~~~~L-SGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..|+++++.+.+ |.|||+|||+++.+..|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 467788 999999999999999999 99999999999999999999999888776 89999999999988889999999
Q ss_pred eCC
Q psy10858 295 YKG 297 (457)
Q Consensus 295 ~~G 297 (457)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.88 E-value=3.3e-25 Score=210.02 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=116.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeE--EEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSL--VVKRREFFVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~--~I~~Gei~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r 164 (457)
++++++++..+.. |+.+ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++.+..... ......
T Consensus 6 ~~~~~~i~tg~~~-----lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-----FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp --CCCEECCSCTT-----TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred ccccceeecCCHh-----HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 4555555555443 4444 2 78999999999999999999999999 7756777888887754321 111223
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+.+||.+|+...++.+++.++....... .. . . ........+.++.++...+..-.++|+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~----~---~---------~~~~~~~~~~~~~~~~~~~~l~~~~p~~l 139 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVGL---PS----E---E---------KFVLEDRFNVDNFLRYIYRVVKAINAKRL 139 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC--------------------------------------CCHHHHHHHHHHHHHHTTCSEE
T ss_pred HHcCCChHHHhhcCCEEEEEcccccccc---cc----c---c---------ceeccCcccHHHHHHHHHHHHHhhCCCEE
Confidence 4577877766555555554433211100 00 0 0 00111223445555555555556899999
Q ss_pred EEeCCCCCCC-----HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH---------h-cc-CeEEEEeC
Q psy10858 245 ILDEPCVGVD-----PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA---------N-DA-SEVAFLYK 296 (457)
Q Consensus 245 ILDEPTsGLD-----p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea---------~-~~-dri~im~~ 296 (457)
+|||||+++| +..++.++++++.+++.|+|||++||+++++ + .| |+|++|+.
T Consensus 140 ilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 140 VIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 9999999998 7777779999888877899999999999997 4 47 99999963
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.87 E-value=4.6e-23 Score=232.99 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=115.2
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI--------VGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L--------~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~ 175 (457)
..+++|++|++++|++++|+|||||||||+||++ .|..-|.++.. ++++ .
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~---d- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIV---D- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECC---S-
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHH---H-
Confidence 5789999999999999999999999999999999 55444433211 1110 0
Q ss_pred CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCCceEEEeCCCCCC
Q psy10858 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKPQLIILDEPCVGV 253 (457)
Q Consensus 176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P~lLILDEPTsGL 253 (457)
.++..+++ .+.....+|+|+++++.+|+++ +++|+++||||||+|+
T Consensus 707 ------------------------------~i~~~ig~--~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 707 ------------------------------CILARVGA--GDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ------------------------------EEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ------------------------------HHHHhcCc--hhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 01111222 1233456888888888888888 9999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858 254 DPLVRKRM-WDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 254 Dp~~r~~i-~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~ 309 (457)
||..+..+ |.+++.+.+ .|.|+|++||+.+.+..||++..|++|++.+.++++++.
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999888 777887765 599999999998888889999999999999988887764
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=8.1e-22 Score=221.88 Aligned_cols=132 Identities=22% Similarity=0.354 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHhhhhcCCCH----------HHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ce
Q psy10858 178 GELTIKETLNFFGMIYGMDE----------SIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QL 243 (457)
Q Consensus 178 ~~lTV~EnL~~~~~l~g~~~----------~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~l 243 (457)
..+||.|++.|+..+ +++. +++.+++ +.+..+||.. +++.+.+|||||||||+||+||..+| ++
T Consensus 450 ~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 450 TAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 458999999996554 4555 3455565 3578899964 69999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~ 311 (457)
|||||||+||||..++.++++++.+++.|.|||+|+||++++..||||++| ++|++++.|+++++...
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999999999999998888899999999999998889999999 89999999999998763
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=3.5e-22 Score=223.45 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=132.3
Q ss_pred CCCccHHHHHHHHHcC---------CCCCceEEEEcCccCCCC---chhhhcCcEEEEcCCCCCCC----CCCHHHHHHH
Q psy10858 125 ASSAGKTTLLKAIVGL---------KNISQGEIWVLGGHPASI---YHKTAGSKVGYMPQELAMFG----ELTIKETLNF 188 (457)
Q Consensus 125 pNGaGKTTLLk~L~Gl---------l~p~sG~I~i~G~~~~~~---~~~~~r~~IGyvpQ~~~L~~----~lTV~EnL~~ 188 (457)
.+..||+|+.+.+... +.+.+|+|.++|+++... ........++-+||++.... .++. ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4667999999988874 456778888888766431 11111111111222211000 0110 01111
Q ss_pred hhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHH
Q psy10858 189 FGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDL 264 (457)
Q Consensus 189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~ 264 (457)
...+ .+++.++++ .+..++|.. +++.+.+|||||||||+||+||+.+| ++|||||||+||||..++.++++
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~ 423 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA 423 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH
Confidence 1111 234566666 577899964 69999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 265 i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~ 311 (457)
++.+++.|.|||+|+|+++++..||+|++| ++|++++.|+++++...
T Consensus 424 l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 424 LENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 988888899999999999988789999999 79999999999998764
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=1.2e-21 Score=221.14 Aligned_cols=135 Identities=22% Similarity=0.317 Sum_probs=116.8
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCH----------HHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC--
Q psy10858 175 AMFGELTIKETLNFFGMIYGMDE----------SIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK-- 240 (457)
Q Consensus 175 ~L~~~lTV~EnL~~~~~l~g~~~----------~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~-- 240 (457)
.-+..+||.|.+.|+.. .+++. +++.+++ +.+..+||.. +++.+.+|||||||||+||+||..+
T Consensus 464 ~q~~~ltV~e~l~f~en-l~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~ 541 (993)
T 2ygr_A 464 AEVCELSIADCADFLNA-LTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLV 541 (993)
T ss_dssp GCSSHHHHHHHHHTTTT-TTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHhhCCHHHHHHHHHh-cCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 34556899999998543 35655 3455555 3478889963 6999999999999999999999998
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~ 311 (457)
|++|||||||+||||..++.++++++.+++.|.|||+|+||++++..||||++| ++|++++.|+++++...
T Consensus 542 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 542 GVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 599999999999999999999999988888999999999999998889999999 79999999999998764
No 96
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.85 E-value=6.5e-24 Score=211.61 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=88.2
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl-l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp 171 (457)
.||+++|++ +.++++++|+| +|+|+||||||||+++|.|. +.|++| |.++|.++... ...+.++|++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t---~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT---VQIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc---ceEeeEEEEe
Confidence 578999998 89999999998 99999999999999999998 889999 88888765431 1135689999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251 (457)
Q Consensus 172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs 251 (457)
|...++..+|+.|+..++..... .+........+.+. .++++.++|||||||+.+|||++ +|++||||+
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~~-----~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDEQ-----FERYLHDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHHHHHH-----HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred cCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHHH-----HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 99888888999998876433210 01111111112111 24678899999999999999986 999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChh
Q psy10858 252 -GVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIE 283 (457)
Q Consensus 252 -GLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ 283 (457)
|||+... ++++.+.+ .++++|+++||+.
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999874 44444433 3789999999984
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=8e-23 Score=191.22 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=97.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNI-------SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET 185 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-------~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En 185 (457)
.|++|++++|+||||||||||+++|+|+..+ ..|.+++++..... ..++++++|...++++ |+.||
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~-~~~~~ 93 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPD-EVLKH 93 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHH-HHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHH-HHhhc
Confidence 6899999999999999999999999996554 44577777654211 1245666776665544 56665
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh-HHHHHHHHHHhh-------cCCceEEEeCCCCCCCHH-
Q psy10858 186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG-QKRRLSFTIAIL-------HKPQLIILDEPCVGVDPL- 256 (457)
Q Consensus 186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG-qkQRlsLA~ALl-------~~P~lLILDEPTsGLDp~- 256 (457)
+.+... ++++ +++.+..+.+++ .+|++|+|||||+++|+.
T Consensus 94 ~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~ 142 (231)
T 4a74_A 94 IYVARA-------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 142 (231)
T ss_dssp EEEEEC-------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred EEEEec-------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence 533211 1222 222233333333 499999999999999983
Q ss_pred ------HH-----HHHHHHHH-HHHhCCcEEEEEcCChhH----Hhc-cCeEEEEeCCe
Q psy10858 257 ------VR-----KRMWDLLQ-VFVGKGRTVIMTTQYIEE----AND-ASEVAFLYKGR 298 (457)
Q Consensus 257 ------~r-----~~i~~~i~-~~~~~g~TIIisTH~~~e----a~~-~dri~im~~Gk 298 (457)
.+ ..+++.+. ..++.|+|||++||.+++ +.. ||++++|++|+
T Consensus 143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 22 25666644 444569999999997665 655 89999998753
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.84 E-value=2.3e-22 Score=223.39 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=117.6
Q ss_pred CceEEEeeEEEe---CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhh
Q psy10858 88 EADEGKNTEKEE---LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 88 ~~Iei~nlsk~y---g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~ 163 (457)
..+++++...-. ++ ..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+. + ..
T Consensus 549 ~~i~i~~~rHP~le~~~--~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----p------a~ 612 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRT--EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----P------AE 612 (765)
T ss_dssp SSEEEEEECCTTGGGTS--CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----S------SS
T ss_pred CcEEEEEeECceEccCC--ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----e------hh
Confidence 456677663333 33 6789999999 99999999999999999999999874 6777642 1 11
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCC
Q psy10858 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKP 241 (457)
Q Consensus 164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P 241 (457)
+..+|+++| ++..+++.||+.. .+|+||+|++.+|+++ +++|
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p 656 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATEN 656 (765)
T ss_dssp EEEECCCSE---EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred ccceeeHHH---hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCC
Confidence 346888877 5666777776532 3689999999999999 9999
Q ss_pred ceEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858 242 QLIILDEP---CVGVDPLVR-KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 242 ~lLILDEP---TsGLDp~~r-~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs 304 (457)
+++||||| |++||+.+. ..+++.+.. .|.|+|++||+.+.+..+ .-.+.++++.+...
T Consensus 657 ~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 657 SLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp EEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECC
T ss_pred CEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEc
Confidence 99999999 999999876 456666543 589999999999887655 22344555555433
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.84 E-value=2.2e-20 Score=193.92 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858 218 RPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293 (457)
Q Consensus 218 ~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i 293 (457)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+++++....++|.++|+|||+......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 345569999999999999999 5899999999999999999999999988765568999999999777777999998
Q ss_pred Ee
Q psy10858 294 LY 295 (457)
Q Consensus 294 m~ 295 (457)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.83 E-value=3.8e-22 Score=195.41 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=100.7
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... .+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeHH----------
Confidence 4789999 9999999999999999999999999999998 99999988665321 11122333331
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
.+++.. .+| |++||+||..+|++|+||||| |+.....+
T Consensus 79 --------------------------~~gl~~-----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~-- 116 (261)
T 2eyu_A 79 --------------------------EVGEDT-----KSF------ADALRAALREDPDVIFVGEMR---DLETVETA-- 116 (261)
T ss_dssp --------------------------EBTTTB-----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH--
T ss_pred --------------------------HhCCCH-----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH--
Confidence 223211 222 899999999999999999999 98886544
Q ss_pred HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858 264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296 (457)
Q Consensus 264 ~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~ 296 (457)
++.. +.|.+|+++||+.+.+..+||++.|..
T Consensus 117 -l~~~-~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 -LRAA-ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp -HHHH-HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred -HHHH-ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 3333 569999999999885556899887753
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.83 E-value=1.2e-23 Score=228.51 Aligned_cols=193 Identities=13% Similarity=0.190 Sum_probs=122.7
Q ss_pred CceEEEeeEEEeCCCCceeEeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNC----------SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPA 156 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~v----------s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~ 156 (457)
.+++++|+++.|+...+.+++.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46889999999975212344444 466665 999999999999999999999988 8999999998752
Q ss_pred C---CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHH
Q psy10858 157 S---IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233 (457)
Q Consensus 157 ~---~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsL 233 (457)
. ......++++||++|++.+++.+||.+|+.+.....+. .. ..+| ++++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~------------------~~-----~~~s---~~~i~l 139 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG------------------EG-----MGIS---HELITL 139 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC------------------SS-----SCCC---SCCEEE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC------------------Cc-----cccc---hHHHHH
Confidence 1 11123467899999999999999999999764332110 00 0011 122344
Q ss_pred HHHhhcCCceEEEeCC------CCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEcCChhHH--------hc-----cCeEE
Q psy10858 234 TIAILHKPQLIILDEP------CVGVDPLVRKRMWDLLQVFV-G-KGRTVIMTTQYIEEA--------ND-----ASEVA 292 (457)
Q Consensus 234 A~ALl~~P~lLILDEP------TsGLDp~~r~~i~~~i~~~~-~-~g~TIIisTH~~~ea--------~~-----~dri~ 292 (457)
+++..+.|+++|+||| |+|||+..++.++++++.+. + .+.+++++||+++.+ .. ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 4555678999999999 99999999999999977743 3 378899999998632 11 24588
Q ss_pred EEeCCeEEEecChhhhh
Q psy10858 293 FLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 293 im~~GkI~~~gs~~~l~ 309 (457)
++.++.++..|+.+++.
T Consensus 220 VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp EEECGGGSSSSSTTCCC
T ss_pred EecchhhcCcccHHHHH
Confidence 99999888888765544
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.83 E-value=1.8e-20 Score=169.08 Aligned_cols=84 Identities=27% Similarity=0.444 Sum_probs=74.2
Q ss_pred CCCCCCCCChhHHHHHHHH------HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858 216 LERPVKYLSGGQKRRLSFT------IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA------~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d 289 (457)
.++++.+||||||||++|| +||+++|++|||||||+|||+..++.+++.+..+.++|+|||++||+++....||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 4678999999999999886 8999999999999999999999999999998887667999999999995445699
Q ss_pred eEEEE--eCCeE
Q psy10858 290 EVAFL--YKGRI 299 (457)
Q Consensus 290 ri~im--~~GkI 299 (457)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
No 103
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.82 E-value=4.3e-21 Score=216.46 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=104.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
..|++||||++++|++++|+||||||||||||+|+++.-... .|..+.. ....++++ ..++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----~g~~vpa-----~~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-----IGSYVPA-----EEATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-----HTCCBSS-----SEEEEECC---SEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-----cCccccc-----hhhhhhHH---HHHHHhCChH
Confidence 679999999999999999999999999999999986532110 0100000 00112211 1111111111
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW- 262 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~- 262 (457)
+ ...+..+++|+||+|++.++++ +++|+++||||||+|+||..+..+.
T Consensus 727 d------------------------------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~ 775 (918)
T 3thx_B 727 D------------------------------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAY 775 (918)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHH
T ss_pred H------------------------------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1 1344567899999999999999 8999999999999999999998886
Q ss_pred HHHHHHHh-CCcEEEEEcCChhHHhccCeEE-EEeCCeEEE
Q psy10858 263 DLLQVFVG-KGRTVIMTTQYIEEANDASEVA-FLYKGRIIA 301 (457)
Q Consensus 263 ~~i~~~~~-~g~TIIisTH~~~ea~~~dri~-im~~GkI~~ 301 (457)
.+++.+.+ .|.|||++||+++.++.+|+.- .+.++.+.+
T Consensus 776 ~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 776 ATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEEE
Confidence 66777654 6999999999998876665532 134444443
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=2.2e-23 Score=194.30 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=114.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC--CCCCHHHHHHHhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF--GELTIKETLNFFG 190 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~--~~lTV~EnL~~~~ 190 (457)
..++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+..
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999998764 489999998776 5689998876532
Q ss_pred hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhH----HHHHHHHHHhhcCCceEEEeCCCCC-------CCHHHH
Q psy10858 191 MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ----KRRLSFTIAILHKPQLIILDEPCVG-------VDPLVR 258 (457)
Q Consensus 191 ~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGq----kQRlsLA~ALl~~P~lLILDEPTsG-------LDp~~r 258 (457)
+.+.....+++.++++.+++.. .++++.++|+|| +||+++|++++.+|.++++||||++ ||+...
T Consensus 60 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 60 ---DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp ---TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred ---CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 2222222344556667776643 566788999997 4788999999999999999999999 999999
Q ss_pred HHHHHHHHH-HHhCCcEEEEEcCChh
Q psy10858 259 KRMWDLLQV-FVGKGRTVIMTTQYIE 283 (457)
Q Consensus 259 ~~i~~~i~~-~~~~g~TIIisTH~~~ 283 (457)
..+++.+.. ..+.|.|++.++|++.
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999998654 4567999999999853
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.81 E-value=7.2e-22 Score=184.20 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=114.7
Q ss_pred ceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
...|+++.. .+++|++++|+||||||||||+++|++...+++|.|.+.+.+............+|+.+|..... .+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 567888888 89999999999999999999999999988888888877665432111001111233333321100 0000
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCC--CHHHH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGV--DPLVR 258 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGL--Dp~~r 258 (457)
+..... .++ . .......|.++.++...+.+..++|+ +|++||||+++ |+..+
T Consensus 88 ---------~~~~~~------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~ 143 (235)
T 2w0m_A 88 ---------IDALMK------------EKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA 143 (235)
T ss_dssp ---------EECCC-----------------C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH
T ss_pred ---------Eecccc------------ccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH
Confidence 000000 000 0 01123449999999888888888999 99999999887 99999
Q ss_pred HHHHHHHHHH-HhCCcEEEEEcCCh--------hHHhc-cCeEEEEeCCe
Q psy10858 259 KRMWDLLQVF-VGKGRTVIMTTQYI--------EEAND-ASEVAFLYKGR 298 (457)
Q Consensus 259 ~~i~~~i~~~-~~~g~TIIisTH~~--------~ea~~-~dri~im~~Gk 298 (457)
+.+++.+..+ ++.|+|||++||++ ..++. ||+|++|+...
T Consensus 144 ~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 144 RKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999986665 45699999999999 44655 99999998653
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.81 E-value=4e-21 Score=214.42 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=112.7
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
..+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+.. ....+|+++| ++..+++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence 6799999999 99999999999999999999999997432 222 11111 1234666665 5556666
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM- 261 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i- 261 (457)
.|++.. ..+++|+||++ ++.+...+++|+++|||||++|+|+.....+
T Consensus 660 ~d~l~~------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~ 708 (800)
T 1wb9_A 660 ADDLAS------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLA 708 (800)
T ss_dssp ----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred HHHHHh------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHH
Confidence 666531 12346777765 4555567899999999999999999888776
Q ss_pred HHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858 262 WDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 262 ~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~ 305 (457)
|.+++.+.+ .|.++|++||+++.+..||++..+++|++.+....
T Consensus 709 ~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 709 WACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcC
Confidence 788888776 49999999999988777888877888888765443
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.80 E-value=6.9e-21 Score=190.56 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=107.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEEEEcCCCCCCCCCCHHHHHHHh
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVGYMPQELAMFGELTIKETLNFF 189 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IGyvpQ~~~L~~~lTV~EnL~~~ 189 (457)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .. .+..++|++|++.+++.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999988754221 11 135699999999998889999998753
Q ss_pred hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858 190 GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 190 ~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~ 269 (457)
.. .+.. ..+++..++ .+.....++...+||++||||++.+|+.++| .||+.+...+++.++...
T Consensus 181 ~~-~~~d--------~~llDt~G~--~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KA-RGYD--------LLFVDTAGR--LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HH-HTCS--------EEEECCCCC--CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred Hh-CCCC--------EEEecCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 21 1110 001222232 2222233455569999999999999994333 344444444555544443
Q ss_pred h-CCcEEEEEcCChhHH
Q psy10858 270 G-KGRTVIMTTQYIEEA 285 (457)
Q Consensus 270 ~-~g~TIIisTH~~~ea 285 (457)
+ .|.|+|++||+.+.+
T Consensus 245 ~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHCCSEEEEECTTSSC
T ss_pred HHcCCcEEEEECCcccc
Confidence 3 489999999986543
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.79 E-value=1.2e-21 Score=187.27 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=107.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH----
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI---- 182 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV---- 182 (457)
+-.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+.++.. ..+..++|+||++.+|+.+++
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f 83 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAF 83 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHH
Confidence 34456899999999999999999999999999986 68999888765432 124579999999887777776
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
.|++.+++..+|.+.+ .+.++ +..++++||| ||+.+++.++
T Consensus 84 ~E~~~~~~~~yg~~~~----~v~~~------------------------------l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 84 LEHAEVFGNYYGTSRE----AIEQV------------------------------LATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp EEEEEETTEEEEEEHH----HHHHH------------------------------HTTTCEEEEE-----CCHHHHHHHH
T ss_pred HHHHHHHhccCCCCHH----HHHHH------------------------------HhcCCeEEEE-----ECHHHHHHHH
Confidence 5655554444444322 12222 2236999999 9999999999
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858 263 DLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 263 ~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
+.+. +++|||++||++++++. |+ +..| .++++++..+
T Consensus 125 ~~l~----~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 125 QKMP----HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHCT----TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHcc----CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 9864 58999999999999864 32 5667 5778877654
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=1e-21 Score=183.74 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~ 196 (457)
|++++|+||||||||||+++|+|+++ ++| |.++|...... ...++++||++|+. .... +++ +++ +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~--~g~~---~~l---~~~-~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL--SGTR---GPL---SRV-GLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET--TSCE---EEE---EEC-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec--ccce---ehh---hcc-ccc
Confidence 78999999999999999999999999 999 99988776432 23568899999986 2211 111 111 000
Q ss_pred HHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHH-HHHH---HhhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHH
Q psy10858 197 ESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRL-SFTI---AILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 197 ~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRl-sLA~---ALl~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~ 269 (457)
.. ...- +...++...+|+|||+++ ++++ |++++|++||||| |+..+|+...+.++++++
T Consensus 68 ~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~--- 133 (189)
T 2i3b_A 68 PP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS--- 133 (189)
T ss_dssp CC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---
T ss_pred CC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh---
Confidence 00 0000 013456667999999988 4454 6899999999999 899999976666655543
Q ss_pred hCCcEEEE----EcCChhHHhccCeEEEEeCCeEEEec
Q psy10858 270 GKGRTVIM----TTQYIEEANDASEVAFLYKGRIIAQD 303 (457)
Q Consensus 270 ~~g~TIIi----sTH~~~ea~~~dri~im~~GkI~~~g 303 (457)
...++|+ ++|+.+ ...+|||..+.+|+|+...
T Consensus 134 -~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 -TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred -CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3445553 349864 2335666666788887643
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=1.2e-20 Score=191.83 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=109.4
Q ss_pred eeEeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----eE-EEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858 105 VVLNNC-SLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQ----GE-IWVLGGHPASIYHKTAGSKVGYMPQELAM 176 (457)
Q Consensus 105 ~aL~~v-s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~s----G~-I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L 176 (457)
..||.+ ++.|++|++++|+||||||||||+++|+|.. +|++ |. |++++.+.. .++++++++|...+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 457776 7899999999999999999999999999998 6776 67 888886541 12457788888766
Q ss_pred CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-------cCCceEEEeCC
Q psy10858 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-------HKPQLIILDEP 249 (457)
Q Consensus 177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-------~~P~lLILDEP 249 (457)
++. ++.+|+.+... . -|.+++|++.++++++ .+|++||+|||
T Consensus 192 ~~~-~v~~ni~~~~~---~---------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 192 DPD-EVLKHIYVARA---F---------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp CHH-HHGGGEEEEEC---C---------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred CHH-HHhhCEEEEec---C---------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 544 55555433210 0 1456677777777776 78999999999
Q ss_pred CCCCCHHH------------HHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858 250 CVGVDPLV------------RKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305 (457)
Q Consensus 250 TsGLDp~~------------r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~ 305 (457)
|+++|+.. ..+++..+.. .++.|+|||+++|....... .+....+..|++++.+..
T Consensus 241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 99999852 3444544443 34569999999999876643 344555667776655543
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-21 Score=181.20 Aligned_cols=171 Identities=12% Similarity=0.024 Sum_probs=99.3
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCccCCCCchhhh
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-----NISQGEIWVLGGHPASIYHKTA 163 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-----~p~sG~I~i~G~~~~~~~~~~~ 163 (457)
+|+++|++++|+. .++++ |++++|+.++|+|+||||||||++.|+|.. .|+.|.+.+.+....
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~------- 70 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV------- 70 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-------
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-------
Confidence 5899999999973 56777 899999999999999999999999999998 788887754321000
Q ss_pred cCcEEEEcCCCCCC----CCCC---HHHHHHHhhh---h-----------cCCCHHHHHHHHHHHHhHcCCCC--CCCCC
Q psy10858 164 GSKVGYMPQELAMF----GELT---IKETLNFFGM---I-----------YGMDESIWLFQMRKYSHVLKLPN--LERPV 220 (457)
Q Consensus 164 r~~IGyvpQ~~~L~----~~lT---V~EnL~~~~~---l-----------~g~~~~~~~~~~~~ll~~l~L~~--~~~~~ 220 (457)
...+-+ .+.+... +.-. .+..+..+.. . .+.+ .....+..++...+++. ...++
T Consensus 71 ~~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 71 ADGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp ETTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEEEEECG
T ss_pred cCCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEEEEecc
Confidence 000111 1111110 0000 1111211111 0 0111 12223445556667753 35567
Q ss_pred CCCChhHHHH-HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy10858 221 KYLSGGQKRR-LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274 (457)
Q Consensus 221 ~~LSGGqkQR-lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~T 274 (457)
..+|+||+|| +..|++++.+|+++++|||||++|+...+.+++.+....++|.|
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 8899999999 89999999999999999999999999999999997666555543
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.77 E-value=5.4e-20 Score=187.95 Aligned_cols=147 Identities=17% Similarity=0.180 Sum_probs=105.4
Q ss_pred EeeEEEeCCCCceeEeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhc
Q psy10858 93 KNTEKEELKPSNVVLNNCSL-------VVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAG 164 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~-------~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r 164 (457)
..++.+|-......|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ... ..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 45555654323456667666 77899999999999999999999999999987 57776544333 221 22
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
...++++|.......++..+ +||+||.++|++|
T Consensus 168 ~~~~~v~q~~~~~~~~~~~~-----------------------------------------------~La~aL~~~Pdvi 200 (356)
T 3jvv_A 168 SKKCLVNQREVHRDTLGFSE-----------------------------------------------ALRSALREDPDII 200 (356)
T ss_dssp CSSSEEEEEEBTTTBSCHHH-----------------------------------------------HHHHHTTSCCSEE
T ss_pred ccccceeeeeeccccCCHHH-----------------------------------------------HHHHHhhhCcCEE
Confidence 34556666543332233322 9999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKG 297 (457)
Q Consensus 245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~G 297 (457)
++|||| |+.. ++.+....+.|.|||+|||+.+.+..+||++.|..|
T Consensus 201 llDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 201 LVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp EESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred ecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999 6555 444223346799999999999988779999888544
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.76 E-value=1.6e-23 Score=192.39 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~ 196 (457)
|++++|+||||||||||+++|++ +.+|.++++|.++.. ...+|+++|....+..+++++++.+.+..+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999998 678999998865422 124577787665555568888887654322100
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCCCC--ChhHHHHHHHHH------HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858 197 ESIWLFQMRKYSHVLKLPNLERPVKYL--SGGQKRRLSFTI------AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 197 ~~~~~~~~~~ll~~l~L~~~~~~~~~L--SGGqkQRlsLA~------ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~ 268 (457)
. ...+++.+......+...++ |+||+|++.++. +++.+|+...+|+ ++|+..++. |+.+...
T Consensus 73 ~------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 73 Q------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp T------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred C------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 0 00011111000000112234 889999988888 9999999988884 899999888 8887776
Q ss_pred HhCCcEEEEEcCC-hhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858 269 VGKGRTVIMTTQY-IEEAND-ASEVAFLYKGRIIAQDSPDGFK 309 (457)
Q Consensus 269 ~~~g~TIIisTH~-~~ea~~-~dri~im~~GkI~~~gs~~~l~ 309 (457)
.+.+.+||.+||. +++++. ||+|+ ++|++++.|+++-+.
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 6668899999999 999976 89998 999999999987654
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-20 Score=195.26 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=101.1
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I 167 (457)
.+|+++||+++|++ +.+++++||+| +|+|+||||||||+++|+|+..++.| .+|..+... .......+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 47999999999988 88999999998 99999999999999999999986655 122222111 11123568
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc---eE
Q psy10858 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ---LI 244 (457)
Q Consensus 168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~---lL 244 (457)
+|++|+..++..+||.||+.+.....+ ......+...++ ..++.+++||++||||++.+|+ +|
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred EEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 999999988888999999877543221 111111111111 1345677889999999999999 99
Q ss_pred EEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858 245 ILDEPC-VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 245 ILDEPT-sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ 283 (457)
++|||| .|||+... ++++.+. .+++||++.|-.+
T Consensus 144 ~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 144 YFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp EECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred EEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 999999 69999874 3333443 3788888877654
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.74 E-value=2.5e-18 Score=167.96 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=104.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l 192 (457)
.+++|++++|+||||||||||++.++|... .|.++ .|..+. ....+.|+..+.... .+.+.+.-..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~------~~~~v~~~~~e~~~~---~~~~r~~~~g-- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL------PTGPVIYLPAEDPPT---AIHHRLHALG-- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC------CCCCEEEEESSSCHH---HHHHHHHHHH--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC------CCccEEEEECCCCHH---HHHHHHHHHH--
Confidence 478999999999999999999999999664 57763 354331 124688887654320 1222221111
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC--CCCHHHH---HHHHHHHH
Q psy10858 193 YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV--GVDPLVR---KRMWDLLQ 266 (457)
Q Consensus 193 ~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs--GLDp~~r---~~i~~~i~ 266 (457)
..... .....+++.+.+.. .++.+..||+||+|++ ++++.+|++||+||||+ ++|+... ..+++.+.
T Consensus 92 ~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 92 AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 12222 22344566777643 5778999999998765 68888999999999999 9998544 77777766
Q ss_pred HH-HhCCcEEEEEcCChhHHh
Q psy10858 267 VF-VGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 267 ~~-~~~g~TIIisTH~~~ea~ 286 (457)
.+ ++.|+|||++||+...+.
T Consensus 165 ~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHCCEEEEEEEC-----
T ss_pred HHHHHcCCEEEEEecCCCccc
Confidence 65 456999999999987653
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.71 E-value=2.3e-22 Score=204.63 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=111.0
Q ss_pred EeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----eEEEEcC----ccCCCCchhhhcCcEEEEcCCCCC
Q psy10858 107 LNNCSLVVKR--REFFVLLGASSAGKTTLLKAIVGLKNISQ----GEIWVLG----GHPASIYHKTAGSKVGYMPQELAM 176 (457)
Q Consensus 107 L~~vs~~I~~--Gei~gLlGpNGaGKTTLLk~L~Gll~p~s----G~I~i~G----~~~~~~~~~~~r~~IGyvpQ~~~L 176 (457)
.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |+|++++ .+. ....... ..|+|++|+..+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH
Confidence 5679999999 99999999999999999999999999999 8877642 221 1111111 224444443322
Q ss_pred CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCCceEEEeC---CC--
Q psy10858 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKPQLIILDE---PC-- 250 (457)
Q Consensus 177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P~lLILDE---PT-- 250 (457)
+ ..|+.+|+.++ +....++.+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 236 ~-~~t~~~nl~~~----------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 236 Y-AVRHSHKIAFI----------------------DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp H-HHHHCSSEEEE----------------------SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred H-HHhccCCEEEE----------------------eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 1 12333332211 000011223345667788888888774 6999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858 251 ----VGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS 310 (457)
Q Consensus 251 ----sGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~ 310 (457)
.++|+..|..+++.+..+ ++.|.+|+++||.-.+.+.++++.+|++ ++..++++++.+
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 589999999999996554 4458999999986333333666655543 444555555543
No 117
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.70 E-value=3.2e-21 Score=195.25 Aligned_cols=175 Identities=12% Similarity=0.152 Sum_probs=125.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhhc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~r 164 (457)
++++++++++|+. ..+|+++||++++|++++|+|+||||||||+++|+|++.|++|+|.+.|.++..... ...+
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 6889999999987 789999999999999999999999999999999999999999999999987643211 1235
Q ss_pred CcEEEEcCCCCCCCCCC------------HHHHHHH-----------------------------hhhhcCCC-HHHH--
Q psy10858 165 SKVGYMPQELAMFGELT------------IKETLNF-----------------------------FGMIYGMD-ESIW-- 200 (457)
Q Consensus 165 ~~IGyvpQ~~~L~~~lT------------V~EnL~~-----------------------------~~~l~g~~-~~~~-- 200 (457)
.++||++|++.+|...+ +.|.+.. ...+.... .++.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 67999999998875321 2222211 00111110 0110
Q ss_pred -HHHHHHHHhHcCCCCCCC-CCCCCChhHHHHHHHHHHhhc------CCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858 201 -LFQMRKYSHVLKLPNLER-PVKYLSGGQKRRLSFTIAILH------KPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 201 -~~~~~~ll~~l~L~~~~~-~~~~LSGGqkQRlsLA~ALl~------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~ 269 (457)
.+.+.+....+.+...|. ....+|+|++|++..|++++. .|++++ ||++|+...+.+|+.+....
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 011112222333333453 335689999999999999987 688887 89999999999999976643
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=5.2e-19 Score=184.56 Aligned_cols=179 Identities=15% Similarity=0.036 Sum_probs=117.3
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~ 165 (457)
..+++++ ++.|++ .. |+++||+|++|++ +||+||||||||||+++|+|+. ++|.++........++
T Consensus 15 ~~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 15 RTVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp --CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred ceEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 4567777 899987 66 9999999999999 9999999999999999999994 2333332211122345
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCH----HHHHHHHHHHHhHc-CCC----C-CCCCC-----------CCC
Q psy10858 166 KVGYMPQELAMFGELTIKETLNFFGMIYG-MDE----SIWLFQMRKYSHVL-KLP----N-LERPV-----------KYL 223 (457)
Q Consensus 166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~----~~~~~~~~~ll~~l-~L~----~-~~~~~-----------~~L 223 (457)
.+||++|++.+++.+||.||+.++..... ... +.+..+...++... ++. . .+.++ ..|
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 79999999999888999999876532110 000 11233444444443 332 0 12221 245
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCC
Q psy10858 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQY 281 (457)
Q Consensus 224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~ 281 (457)
+-.. +.++++|..+++++++|||+..|.+.....+.+.++. +...|++|+.+|.+
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 5554 7999999999999999999999999999999888664 77789999988865
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.69 E-value=4.5e-20 Score=168.73 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=98.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l 192 (457)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.++.... ..++.++|++|+.. +.++|.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 78899999987642111 11244678887654 356888988765432
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858 193 YGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 193 ~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~ 269 (457)
...... ...++.++..+++.. .+..+..+|+|++||+.+||++..+|+++ +|+..++.+++.++.+.
T Consensus 79 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 79 YAKEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HhccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 100000 000000011111111 13456789999999999999999999887 69988888888765443
Q ss_pred hCCcEEEEEc
Q psy10858 270 GKGRTVIMTT 279 (457)
Q Consensus 270 ~~g~TIIisT 279 (457)
+.+..+|.++
T Consensus 149 ~~~~~~i~t~ 158 (191)
T 1zp6_A 149 AFEHHVLPVS 158 (191)
T ss_dssp GGGGGEEECT
T ss_pred cccccEEECC
Confidence 3233344443
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.68 E-value=3.5e-20 Score=177.71 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM- 191 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~---Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~- 191 (457)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+... ..+..+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST----EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 9999999999887754321 123345667888888888899999876321
Q ss_pred -------hcCCCHHHHHHHHHHHHh--HcC------------CCC-CCCCCCCCChhHHHHHHHHHHh-hcCCceEEEe-
Q psy10858 192 -------IYGMDESIWLFQMRKYSH--VLK------------LPN-LERPVKYLSGGQKRRLSFTIAI-LHKPQLIILD- 247 (457)
Q Consensus 192 -------l~g~~~~~~~~~~~~ll~--~l~------------L~~-~~~~~~~LSGGqkQRlsLA~AL-l~~P~lLILD- 247 (457)
+.+.+... .++..+.. .++ +.. .++++.+||| |+ +|+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 22333222 12222221 122 111 3677889999 66 778 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHhC
Q psy10858 248 ---EPCVGVDPLVRKRMWDLLQVFVGK 271 (457)
Q Consensus 248 ---EPTsGLDp~~r~~i~~~i~~~~~~ 271 (457)
|||+|+|+..++.+++.++.+.++
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999987776554
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=1.7e-17 Score=156.43 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=84.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CceEEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVG--LKNI-----SQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKE 184 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p-----~sG~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~E 184 (457)
.|++|++++|+||||||||||++.|++ +.++ ..|.+++++....... .....+++|+.+|+ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 489999999999999999999999999 5655 5678888775421110 01111223333221 111
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHH-HHHHHHhh--cCCceEEEeCCCCCCCHH-----
Q psy10858 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR-LSFTIAIL--HKPQLIILDEPCVGVDPL----- 256 (457)
Q Consensus 185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQR-lsLA~ALl--~~P~lLILDEPTsGLDp~----- 256 (457)
|+ .+ ...++..+... +.-+.+++ ++|+++++|||++.+|+.
T Consensus 92 ~~-------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~ 140 (243)
T 1n0w_A 92 NV-------------------------AY------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRG 140 (243)
T ss_dssp TE-------------------------EE------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------
T ss_pred Ce-------------------------EE------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCc
Confidence 11 00 11233333222 22222333 689999999999999985
Q ss_pred --H-----HHHHHHHH-HHHHhCCcEEEEEcCChhHHh--------------------ccCeEEEEeCC
Q psy10858 257 --V-----RKRMWDLL-QVFVGKGRTVIMTTQYIEEAN--------------------DASEVAFLYKG 297 (457)
Q Consensus 257 --~-----r~~i~~~i-~~~~~~g~TIIisTH~~~ea~--------------------~~dri~im~~G 297 (457)
. ...++..+ +..++.|+|||+++|...+.. .||++++|+.|
T Consensus 141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 23444443 334455999999999766532 47999999865
No 122
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.66 E-value=2.6e-16 Score=145.40 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=71.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858 216 LERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291 (457)
Q Consensus 216 ~~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri 291 (457)
..+.+..||||||||++||+||+. .|+++||||||+|||+..++.++++++...+ +.++|++||+......||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 356788999999999999999974 4699999999999999999999999877644 57899999998877789998
Q ss_pred EEE--eCCeE
Q psy10858 292 AFL--YKGRI 299 (457)
Q Consensus 292 ~im--~~GkI 299 (457)
+.+ .+|..
T Consensus 137 ~~v~~~~g~s 146 (173)
T 3kta_B 137 IGVSMRDGVS 146 (173)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 855 46653
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.66 E-value=3.8e-18 Score=174.12 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=111.7
Q ss_pred EEEeeEEE---eCCCCceeE---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC
Q psy10858 91 EGKNTEKE---ELKPSNVVL---------NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158 (457)
Q Consensus 91 ei~nlsk~---yg~~~~~aL---------~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~ 158 (457)
++++++++ |...+..+| +++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|.. ..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 56666666 642112344 99999999999999999999999999999999999999999998743 21
Q ss_pred chhhhcCcEEEEc-CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy10858 159 YHKTAGSKVGYMP-QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 159 ~~~~~r~~IGyvp-Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL 237 (457)
.....++.++|++ |+..+ .++++..+|..|+.++
T Consensus 215 ~~~~~~~~v~~v~~q~~~~---------------------------------------------~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE---------------------------------------------EENAPVTAATLLRSCL 249 (361)
T ss_dssp CCTTCSSEEEEECC-------------------------------------------------------CCHHHHHHHHT
T ss_pred CccccCCEEEEeecCcccc---------------------------------------------ccccccCHHHHHHHHH
Confidence 1122456799999 65431 0123334677888899
Q ss_pred hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298 (457)
Q Consensus 238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk 298 (457)
..+|+.+++||+.. ..+++.++.+.....|++.++|..+....++|+..|..|.
T Consensus 250 ~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 250 RMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp TSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred hcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999986 3456666665444567899999977445689999887764
No 124
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.66 E-value=4.3e-19 Score=161.54 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=77.2
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
++.++++++|++ +.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ... .+ |
T Consensus 8 ~~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~-~~--~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNI-AG--K 79 (158)
T ss_dssp ECSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEE-TT--E
T ss_pred cCCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccC-CC--c
Confidence 344567888887 78999999999999999999999999999999999999 9999999999876421 111 22 8
Q ss_pred EcCCCCCCCCCCHHHHHHHhh
Q psy10858 170 MPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~ 190 (457)
++|++.+| .+||.||+.+.+
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMG 99 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHST
T ss_pred ceeccccc-cCCcHHHHHHcC
Confidence 99999999 899999997643
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.65 E-value=1.2e-17 Score=171.31 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E 184 (457)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. . ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence 456655 7999999999999999999999999999998 899987776543 1 2356788999841
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH
Q psy10858 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264 (457)
Q Consensus 185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~ 264 (457)
+++. +..| +.+|++||..+|++|++|||+ |+.. ++..
T Consensus 191 --------------------------~g~~-----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~~~ 227 (372)
T 2ewv_A 191 --------------------------VGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLET---VETA 227 (372)
T ss_dssp --------------------------BTTT-----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HHHH
T ss_pred --------------------------cCCC-----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HHHH
Confidence 2221 2334 469999999999999999999 7665 3444
Q ss_pred HHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFL 294 (457)
Q Consensus 265 i~~~~~~g~TIIisTH~~~ea~~~dri~im 294 (457)
++.. ..|.+|+.|+|+.+....+||++.|
T Consensus 228 l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 228 LRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 5443 5689999999996633446776544
No 126
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.64 E-value=1.5e-15 Score=140.94 Aligned_cols=153 Identities=15% Similarity=0.022 Sum_probs=97.2
Q ss_pred ceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 104 NVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
...|+.+.. .+++|++++|+||||||||||++.|++ .+..+.+++.. +.. ++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~----~~~ 59 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGG----FSP 59 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCC----CCH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCC----CCH
Confidence 345666665 689999999999999999999999999 33333333322 211 111
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH--HHHHHHHHHhhcC-CceEEEeCCCCCCCHHHH-
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ--KRRLSFTIAILHK-PQLIILDEPCVGVDPLVR- 258 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq--kQRlsLA~ALl~~-P~lLILDEPTsGLDp~~r- 258 (457)
+.+.-.....+...+. +++.+ .+.++|+++ +|+++.+++++.+ |+++|+||||+++|+...
T Consensus 60 -~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 60 -ERLVQMAETRGLNPEE-------ALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp -HHHHHHHHTTTCCHHH-------HHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred -HHHHHHHHhcCCChHH-------HhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 1111111112332211 12222 123445554 5688888999986 999999999999997432
Q ss_pred -------HHHHHHHHHH-HhCCcEEEEEcCChh-------------HHh-ccCeEEEEeCC
Q psy10858 259 -------KRMWDLLQVF-VGKGRTVIMTTQYIE-------------EAN-DASEVAFLYKG 297 (457)
Q Consensus 259 -------~~i~~~i~~~-~~~g~TIIisTH~~~-------------ea~-~~dri~im~~G 297 (457)
..+++.++.+ ++.|+|||+++|... .++ .||++++|+..
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3344444444 345899999999876 344 48999999754
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.64 E-value=8.9e-18 Score=177.92 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=119.2
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc------hhhhcCcEEEEcCCCCCCCCC
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY------HKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~------~~~~r~~IGyvpQ~~~L~~~l 180 (457)
.+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.|.+..... ....+++|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764321 111356799999999888889
Q ss_pred CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCC-ceEEEeCCCCCCCHHHH
Q psy10858 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKP-QLIILDEPCVGVDPLVR 258 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P-~lLILDEPTsGLDp~~r 258 (457)
++++|+.+... .+.+- -+++..|.. +.. ..|-.-.+|++.+++++. ..| ++||...||+|.|....
T Consensus 363 tV~e~l~~a~~-~~~Dv--------VLIDTaGrl--~~~-~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ 430 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNIDV--------LIADTAGRL--QNK-SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ 430 (503)
T ss_dssp HHHHHHHHHHH-TTCSE--------EEECCCCSC--CCH-HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred HHHHHHHHHHh-cCCCE--------EEEeCCCcc--chh-hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence 99999987532 22110 011111211 110 112223357888888774 457 45555559999765522
Q ss_pred HHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChhhh
Q psy10858 259 KRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPDGF 308 (457)
Q Consensus 259 ~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~~l 308 (457)
++.+. .-|.|.||+|| ++.... ...+.++. +..|.+.|+.+.+
T Consensus 431 ------ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 431 ------AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp ------HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred ------HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 22222 34889999999 555322 33333333 3345555555444
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=8.4e-20 Score=182.99 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=106.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCceEEEEcCccCCCCc---------------hhhhcCcEEEE---c
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLK--------NISQGEIWVLGGHPASIY---------------HKTAGSKVGYM---P 171 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll--------~p~sG~I~i~G~~~~~~~---------------~~~~r~~IGyv---p 171 (457)
++++|+|+||||||||+|+|.|+. .|+.|+|.++|..+.... ....++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 789999999998765421 11233457877 6
Q ss_pred CCCCCCCCCCHHHHHHHhh--hh----cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858 172 QELAMFGELTIKETLNFFG--MI----YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLII 245 (457)
Q Consensus 172 Q~~~L~~~lTV~EnL~~~~--~l----~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI 245 (457)
|+..++++.++.||..+.. .+ +..+......++..++..+++....+...+||+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 8877767778888765421 10 0000000000111223344443321222379999999999999999999988
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286 (457)
Q Consensus 246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~ 286 (457)
||| +.+++.++.+ ..+.||+++||+..+++
T Consensus 164 -de~---------~~l~~~l~~l-~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 164 -GEA---------EKLHERLARI-NARAPVYTVTHGDIDLG 193 (318)
T ss_dssp -SCT---------HHHHHHHHHH-CSSSCEEECCSSCCCGG
T ss_pred -CHH---------HHHHHHHHHh-CCCCeEEEecccCCCHH
Confidence 999 6777777665 46899999999754443
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.61 E-value=1.4e-16 Score=162.96 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=93.3
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEc-CccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVL-GGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~-G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
-++++++. .+|++++|+||||||||||+++|+|+.. |++|+|.+. |.... ....+.++|++|+..+++..+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777775 4899999999999999999999999999 999999986 54432 12356799999999999888998
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI 237 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL 237 (457)
++ .+++++.++...++.++++.+++.. .+..+.+|| ||+||++||+++
T Consensus 280 e~-----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EF-----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TC-----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hh-----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 84 2346677777777888899999854 789999999 999999999875
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.56 E-value=4.8e-16 Score=157.11 Aligned_cols=164 Identities=10% Similarity=0.048 Sum_probs=110.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh------hhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK------TAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~------~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+..+.|++|...+++.++|++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999887543211 1223466999999999999999999
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i 265 (457)
.+.... +.+. -+++..+... ....+.+|| .+++++..++.+++||.+| |. .+.+.+
T Consensus 205 ~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~~------~~~~~~ 261 (328)
T 3e70_C 205 QHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-GN------AIVEQA 261 (328)
T ss_dssp HHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-TT------HHHHHH
T ss_pred HHHHhc-cchh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-HH------HHHHHH
Confidence 764221 1100 0122223211 122233333 4899999999999999555 43 344443
Q ss_pred HHHH-hCCcEEEEEcCChhHHh---------c-cCeEEEEeCCeE
Q psy10858 266 QVFV-GKGRTVIMTTQYIEEAN---------D-ASEVAFLYKGRI 299 (457)
Q Consensus 266 ~~~~-~~g~TIIisTH~~~ea~---------~-~dri~im~~GkI 299 (457)
+.+. +.+.|+|++||.-+.+. . .-.|.++..|+-
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 4433 45899999999543211 1 235777776664
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.54 E-value=9.3e-18 Score=178.92 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=113.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC--------
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-------- 175 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-------- 175 (457)
..+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.|..-.... ....+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999999999999886421111 1233555544322
Q ss_pred --------------CCCCCCHHHHHHHhhhhc-CCC------HHHHHHHHHHHHhH-cCCCC-----CC---CCCCCCCh
Q psy10858 176 --------------MFGELTIKETLNFFGMIY-GMD------ESIWLFQMRKYSHV-LKLPN-----LE---RPVKYLSG 225 (457)
Q Consensus 176 --------------L~~~lTV~EnL~~~~~l~-g~~------~~~~~~~~~~ll~~-l~L~~-----~~---~~~~~LSG 225 (457)
++.+++..|++.++.... |.. .....+.+..+... ++++. .+ .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 234666666665543332 310 01112222222211 22211 12 23446899
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EcCChhHHhc-cC
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM--TTQYIEEAND-AS 289 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi--sTH~~~ea~~-~d 289 (457)
||+||+++|. + | |+||||..++.+|+.+..+.+.|.|+++ +||+++++.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987652 1 7 9999999988888876555566889985 9999999864 53
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=1.7e-16 Score=158.03 Aligned_cols=122 Identities=10% Similarity=0.004 Sum_probs=87.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCCC-----CCCCHH
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAMF-----GELTIK 183 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~-----~~lTV~ 183 (457)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++.+........+.+||++|.|.+. +.+|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 345679999999999999999999999 99999999999 888775432211224689999998653 67899
Q ss_pred HHH--HHh------hhhcC-CCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHH
Q psy10858 184 ETL--NFF------GMIYG-MDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTI 235 (457)
Q Consensus 184 EnL--~~~------~~l~g-~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ 235 (457)
|++ .|. .++.+ ....+...++.++++.++|.. .+++++.|||.++|++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887 332 12333 223334566888999999963 57889999999999999986
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.54 E-value=5.6e-15 Score=134.36 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=78.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
+|++++|+.++|.||||+|||||+++|+|.+.|++|.. +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~----------~~~~~~~~~~- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF----------FDTKDLIFRL- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE----------EEHHHHHHHH-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE----------EEHHHHHHHH-
Confidence 35677899999999999999999999999987655521 111 2333332211
Q ss_pred hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q psy10858 191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFV 269 (457)
Q Consensus 191 ~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~ 269 (457)
........ .. -+...+.+|++||||||++ ++|+..+..+++++....
T Consensus 83 --------------~~~~~~~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~ 130 (180)
T 3ec2_A 83 --------------KHLMDEGK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY 130 (180)
T ss_dssp --------------HHHHHHTC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHhcCch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence 01010000 00 1122344899999999985 999999999999988777
Q ss_pred hCCcEEEEEcCChhH
Q psy10858 270 GKGRTVIMTTQYIEE 284 (457)
Q Consensus 270 ~~g~TIIisTH~~~e 284 (457)
++|+++|++||...+
T Consensus 131 ~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 131 NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTTCEEEEECCCCSC
T ss_pred HcCCCEEEEcCCChh
Confidence 789999999998643
No 134
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=2e-14 Score=146.54 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=67.4
Q ss_pred CCCCCCChhHHHHH------HHHHHhhcC-CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858 218 RPVKYLSGGQKRRL------SFTIAILHK-PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290 (457)
Q Consensus 218 ~~~~~LSGGqkQRl------sLA~ALl~~-P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr 290 (457)
+++.+||||||||+ ++|+||+.+ |++|||||||+|||+..+..+++.+..+. .+.+||+|||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHHHhhCCE
Confidence 55679999999988 567889999 99999999999999999999999987753 45789999999875556999
Q ss_pred EEEEe
Q psy10858 291 VAFLY 295 (457)
Q Consensus 291 i~im~ 295 (457)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=6.2e-16 Score=161.03 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=98.3
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
-++++|+++.|++++|+|+|||||||||++|+|..+ .+.+.+... ....+|+++++.. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999854 233433221 2234666665430 111111111
Q ss_pred HHh---hhhcCCCHHHHH--HHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH
Q psy10858 187 NFF---GMIYGMDESIWL--FQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261 (457)
Q Consensus 187 ~~~---~~l~g~~~~~~~--~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i 261 (457)
.+. ....++.....+ ++++.++..+++. ++++.+||+|++|++++|++|+..|.+|+| +.+|+..+..+
T Consensus 214 Gli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~ 287 (416)
T 1udx_A 214 GIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAV 287 (416)
T ss_dssp CCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHH
Confidence 100 011122221111 1122233344443 567788999999999999999999999999 99999877444
Q ss_pred HHHHHHHHhCCcEEEEEcC
Q psy10858 262 WDLLQVFVGKGRTVIMTTQ 280 (457)
Q Consensus 262 ~~~i~~~~~~g~TIIisTH 280 (457)
.++.+.+.+.|.++|++|.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 4445555556777766553
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=5.1e-18 Score=170.59 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=120.7
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCccCC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRR-------EFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPA 156 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~G-------ei~gLlGpNGaGKTTLLk~L~Gll----~p~sG~I~i~G~~~~ 156 (457)
.+++.++++..||. ..+++++++.|++| +.++|.||||+|||||+++|+|.+ .+++|.+...+.++.
T Consensus 17 ~~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 17 QFLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CTTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred HHcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 35667788888887 78999999999887 899999999999999999999998 677777766554432
Q ss_pred CCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC----HHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHH
Q psy10858 157 SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----ESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS 232 (457)
Q Consensus 157 ~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~----~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRls 232 (457)
.......+..|+|++|.+.+.+ ++.|++......++.. .....+.+...+..+.+..+.+.+..||+|++||+.
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCS
T ss_pred HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcC
Confidence 1101112457999999888765 7888885433333321 112223344445555553356778899999999986
Q ss_pred HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCe
Q psy10858 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASE 290 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dr 290 (457)
++ .+|||...+.++++++... ..+ ++|+.+.+.. +++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 54 7889999999999976654 334 3688776654 443
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.51 E-value=1e-14 Score=130.88 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=72.6
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
+|+++ +|+.++|+||||+|||||+++|+|...+ +| .+++.+.+... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------~----------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------T----------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------C-----------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------H-----------------
Confidence 45555 8999999999999999999999999876 46 55555433211 0
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
+++.+|++|+||||++ +|+..++.+++
T Consensus 79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~ 105 (149)
T 2kjq_A 79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS 105 (149)
T ss_dssp ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence 2356899999999998 66666889999
Q ss_pred HHHHHHhCCcE-EEEEcCC
Q psy10858 264 LLQVFVGKGRT-VIMTTQY 281 (457)
Q Consensus 264 ~i~~~~~~g~T-IIisTH~ 281 (457)
++....++|++ +|++||.
T Consensus 106 li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 106 IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHcCCcEEEEECCC
Confidence 98887777888 8889885
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.51 E-value=8.3e-18 Score=175.22 Aligned_cols=150 Identities=11% Similarity=0.007 Sum_probs=104.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhc
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAG 164 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r 164 (457)
.++++++.+.|+. ..+|+++ + .++|++++|+|||||||||||++|+|+++|++|+|.+.|.++.... ....+
T Consensus 143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 4556666666655 5678888 5 3899999999999999999999999999999999999887763211 11223
Q ss_pred CcEEEEc---------CCCCC--CCC----CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCCCCCCCCCCCh
Q psy10858 165 SKVGYMP---------QELAM--FGE----LTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225 (457)
Q Consensus 165 ~~IGyvp---------Q~~~L--~~~----lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSG 225 (457)
+.+|+.+ |++.+ +.+ .|+.+++.+...-+ .+........+. .+..+++... ..+.+|||
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~-~~~~~LSg 296 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPF-LISSSLLG 296 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHH-HHHHHEEE
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHH-HHHHHHHH
Confidence 4566655 88865 344 68888887643210 011111122222 3456677542 36788999
Q ss_pred hHHHHHHHHHHhhcCCceEEE
Q psy10858 226 GQKRRLSFTIAILHKPQLIIL 246 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLIL 246 (457)
||+|| ||+||+.+|++..-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999999763
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=3e-17 Score=169.66 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=123.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCceEEEEcCccCCCCc-hhhhcCcE---EEEcCCCCC
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVG------------LKNISQGEIWVLGGHPASIY-HKTAGSKV---GYMPQELAM 176 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G------------ll~p~sG~I~i~G~~~~~~~-~~~~r~~I---GyvpQ~~~L 176 (457)
++++|+.+||+|+||||||||+++|+| .+.|++|.|.+.|..+.... ....++.+ .++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 66799999999875431100 01112233 478899998
Q ss_pred CCCCCHHHHH--HHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCC--ceEEEeCCCCC
Q psy10858 177 FGELTIKETL--NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP--QLIILDEPCVG 252 (457)
Q Consensus 177 ~~~lTV~EnL--~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P--~lLILDEPTsG 252 (457)
+...+..|++ .|...+++.+ .++..++.. .+..+..+||++ +| +++++|||+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 8888876655 4444333221 122222221 245555677764 89 99999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEE-EEeCC-eEEEecCh
Q psy10858 253 VDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVA-FLYKG-RIIAQDSP 305 (457)
Q Consensus 253 LDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~-im~~G-kI~~~gs~ 305 (457)
+|+..+++.|+.++.. .+.|.||+ +|++.++.. |+++. +|++| +++..|+.
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999998776 66677764 999999865 99998 99999 88776654
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3e-14 Score=142.10 Aligned_cols=137 Identities=11% Similarity=0.126 Sum_probs=78.9
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CH
Q psy10858 120 FVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DE 197 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~ 197 (457)
+.|.||||+||||++++|+| +..|+.|.+.++|.+..... ..+..+++++|...+.-..+- .+. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD----------MGNNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC--------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh----------cCCcch
Confidence 89999999999999999999 88999999999887654321 124678999987654211110 011 11
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858 198 SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277 (457)
Q Consensus 198 ~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi 277 (457)
...++.+.++.....+ +... +||| +..+|+++|+|||++ ||+.++..+++.++.. ..++++|+
T Consensus 107 ~~~~~~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~~~~~~Il 169 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIM 169 (354)
T ss_dssp HHHHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEE
T ss_pred HHHHHHHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-cCCCEEEE
Confidence 1223333333222222 2222 5676 788999999999999 9999999999998775 35789999
Q ss_pred EcCChhHH
Q psy10858 278 TTQYIEEA 285 (457)
Q Consensus 278 sTH~~~ea 285 (457)
+||+++.+
T Consensus 170 ~t~~~~~l 177 (354)
T 1sxj_E 170 VCDSMSPI 177 (354)
T ss_dssp EESCSCSS
T ss_pred EeCCHHHH
Confidence 99998754
No 141
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.49 E-value=8.9e-17 Score=148.09 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=69.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCc---hhhhc-CcEE----EEcCCCCCCCCCCHHHHH
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIY---HKTAG-SKVG----YMPQELAMFGELTIKETL 186 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~---~~~~r-~~IG----yvpQ~~~L~~~lTV~EnL 186 (457)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++...+ ....| +.+| +++|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999998 899999998754322 22233 3466 889987655 110
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhH-cCCCCCCCC-CCCCChhHHHHHHHHHHhhcCCceE
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHV-LKLPNLERP-VKYLSGGQKRRLSFTIAILHKPQLI 244 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~-l~L~~~~~~-~~~LSGGqkQRlsLA~ALl~~P~lL 244 (457)
+ ..+ ....+.++++. +. ..|.. ...|||||+||++||||++.+|++.
T Consensus 77 -------~-~~~-~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -------V-SEE-EGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -------C-CHH-HHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred -------C-Chh-hhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCccC
Confidence 0 011 11123333333 32 12221 2249999999999999999999873
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.46 E-value=1.9e-16 Score=157.80 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=103.2
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCce
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVV-------------------KRREFFVLLGASSAGKTTLLKAIVGLKN--ISQG 146 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I-------------------~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p~sG 146 (457)
.+|++++|++.|+ .+++++++.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4789999999994 4789999988 9999999999999999999999999988 9999
Q ss_pred EEEE---cCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCC
Q psy10858 147 EIWV---LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223 (457)
Q Consensus 147 ~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~L 223 (457)
+|.+ +|.... . ..++.+|++ |...+++.+|+.+++.+...++.-.. .+..+..+ .
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------~i~~P~~~-----~ 169 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------NVTAPVYS-----H 169 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------CEEECCEE-----T
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------ceeccccc-----c
Confidence 9999 876542 1 223568888 88888888999999987765543110 01112111 1
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp 255 (457)
+.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 170 ~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 170 LIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 211 233333345678999999999998874
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.44 E-value=2e-14 Score=148.95 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=85.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCce-----EEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLK--AIVGLKNISQG-----EIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKE 184 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk--~L~Gll~p~sG-----~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~E 184 (457)
-|++|++++|+||||||||||++ ++.++.+++.| .+++++....... .....+++|+.+| ++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle 245 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN 245 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence 68999999999999999999999 45677776544 7777765421110 0111122333222 2222
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCCh-hHHHHHHHHHHh--hcCCceEEEeCCCCCCCHHHH---
Q psy10858 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG-GQKRRLSFTIAI--LHKPQLIILDEPCVGVDPLVR--- 258 (457)
Q Consensus 185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSG-GqkQRlsLA~AL--l~~P~lLILDEPTsGLDp~~r--- 258 (457)
|+.+. ...++ .+.+.+.-+.++ ..+|+++++|||++.+|+...
T Consensus 246 ni~~~-------------------------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g 294 (400)
T 3lda_A 246 NVAYA-------------------------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRG 294 (400)
T ss_dssp TEEEE-------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------C
T ss_pred cEEEe-------------------------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCcc
Confidence 22110 01111 122222223333 257999999999999997532
Q ss_pred ---------HHHHHHHHHH-HhCCcEEEEEcCChh-------------------HHhc-cCeEEEEeCCe
Q psy10858 259 ---------KRMWDLLQVF-VGKGRTVIMTTQYIE-------------------EAND-ASEVAFLYKGR 298 (457)
Q Consensus 259 ---------~~i~~~i~~~-~~~g~TIIisTH~~~-------------------ea~~-~dri~im~~Gk 298 (457)
..+++.+..+ ++.|+|||+|+|... .+.. +|.+++|+.++
T Consensus 295 ~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 295 ELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4556665544 445999999999831 1233 78888887653
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.43 E-value=1.6e-17 Score=163.17 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=105.3
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-CCCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-AMFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~-~L~~~lTV 182 (457)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++.........+.+++++|.. ..++.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 56899999999999 999999999999999999999877 79999998775432223345688888875 45566667
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC----------
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV---------- 251 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs---------- 251 (457)
.|++...+..++.. ... .+.. .++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~------~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 109 FDEVDALCPRRSDR------ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eehhhhhhcccCCC------cch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 77765433221110 000 0111 35567789999999999999999999985 99863
Q ss_pred --CCCHHHHHHHHHHH
Q psy10858 252 --GVDPLVRKRMWDLL 265 (457)
Q Consensus 252 --GLDp~~r~~i~~~i 265 (457)
--|...|..+|+.+
T Consensus 175 ~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 175 VGLPPPADRLAILKTI 190 (274)
T ss_dssp CCSCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHH
Confidence 34788888888763
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.42 E-value=1.5e-15 Score=151.01 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=75.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCC-------------
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELA------------- 175 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~------------- 175 (457)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|+++.........+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 556789999999999999999999999999999999999 8887754322222246899999985
Q ss_pred ---CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCCh
Q psy10858 176 ---MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSG 225 (457)
Q Consensus 176 ---L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSG 225 (457)
+|+++|+ +|+.|..... ..+...++.++++.++|+ . .+++++.||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9888753211 122345678889999995 3 5777888874
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.42 E-value=3.9e-15 Score=147.82 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=87.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh----
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG---- 190 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~---- 190 (457)
+++.++||.|++|||||||.+.|.+++.+. | . .++.+.+|+|+..+++. ++++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 468899999999999999999999998763 2 0 02345666999987754 8888987642
Q ss_pred --hhcCCCHHHHHHHHHHHHhHcCCC------C---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858 191 --MIYGMDESIWLFQMRKYSHVLKLP------N---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256 (457)
Q Consensus 191 --~l~g~~~~~~~~~~~~ll~~l~L~------~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~ 256 (457)
..+|.+.......+.+.++.+... . ...+..++||||+||+++|++...+|+|||+||||+++|+.
T Consensus 92 l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 112333222223344444444322 1 23455789999999999973333389999999999999985
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.39 E-value=4.7e-17 Score=151.88 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=84.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKN-------------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-------------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l 180 (457)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.+....+....++.+ +|+..++ ..
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~ 74 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HA 74 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-ee
Confidence 35899999999999999999999999875 55565 345433222222222222 3333222 12
Q ss_pred CHHHHHHHhhhhcCCCHHHHHHHHHHH-HhHcCCCCCCCCCCCCChhHHH----HHHHHH-HhhcCCceEEEeCCCCCCC
Q psy10858 181 TIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNLERPVKYLSGGQKR----RLSFTI-AILHKPQLIILDEPCVGVD 254 (457)
Q Consensus 181 TV~EnL~~~~~l~g~~~~~~~~~~~~l-l~~l~L~~~~~~~~~LSGGqkQ----RlsLA~-ALl~~P~lLILDEPTsGLD 254 (457)
++.+| ++|.+.++..+.++.. ...+.+. ..|-++ ++ .|+ +++.+|++++|||+|+++|
T Consensus 75 ~~~~n------~~g~~~~~i~~~~~~~~~~~~~~~---------~~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 75 EFSGN------LYGTSKEAVRAVQAMNRICVLDVD---------LQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp EETTE------EEEEEHHHHHHHHHTTCEEEEECC---------HHHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred eecCc------cCCCCHHHHHHHHHcCCcEEEECC---------HHHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 22222 3444444433332210 0001110 011111 12 455 7888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858 255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295 (457)
Q Consensus 255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~ 295 (457)
..+.+.|.+.+....++ +..+| .. ..+|+|++++
T Consensus 139 ~~~e~~i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD----MESSK--EP-GLFDLVIIND 172 (198)
T ss_dssp CSCHHHHHHHHHHHHHH----TTGGG--ST-TTCSEEEECS
T ss_pred CCCHHHHHHHHHHHHHH----HHHhh--cc-CCceEEEECC
Confidence 98888888876655432 23345 11 5589887765
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.35 E-value=1.2e-14 Score=133.69 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=75.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
|+++++|+++||+||||||||||+++|+|+++ .+.+.+...........+..++|+||++.+++.+++.+++.+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 67889999999999999999999999999974 57777765543322223457899999988888777777664433
Q ss_pred hh----cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 191 MI----YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 191 ~l----~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
.. ++.+.+. +.++++.-...-.+ +..|-+..++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~----i~~~l~~g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDW----VLRQLKAGRDVLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHH----HHHHHHTTCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHH----HHHHHHcCCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 32 3333332 22333221000011 233334445555667777888777
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.34 E-value=9.5e-13 Score=130.96 Aligned_cols=140 Identities=14% Similarity=0.240 Sum_probs=94.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG 194 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g 194 (457)
++|++++|+|+||+||||+++.|++.+.+++| ++|+++.++.. ..++.|++..++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~---r~~a~eqL~~~~~~-- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY---RIAAVEQLKTYAEL-- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence 57999999999999999999999999988777 23555555542 24566666543332
Q ss_pred CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH---hC
Q psy10858 195 MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV---GK 271 (457)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~---~~ 271 (457)
.+++... ..+ +..-+.+++ .+.+|+++|+| |+|+|+..+..++++.+.+. ..
T Consensus 160 ----------------~gl~~~~----~~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~ 214 (296)
T 2px0_A 160 ----------------LQAPLEV----CYT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI 214 (296)
T ss_dssp ----------------TTCCCCB----CSS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred ----------------cCCCeEe----cCC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence 2332110 012 233344555 45999999999 99999988877777765543 22
Q ss_pred CcEEEE-EcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858 272 GRTVIM-TTQYIEEAND-ASEVAFLYKGRIIAQ 302 (457)
Q Consensus 272 g~TIIi-sTH~~~ea~~-~dri~im~~GkI~~~ 302 (457)
++++++ +||..+++.. ++++..+..+.++..
T Consensus 215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 344555 5999888765 777666666777653
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.34 E-value=3.8e-15 Score=139.30 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=87.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
.++|+++||+||||||||||+++|+|+++|+ .|.|.++|..... +..+++....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~-----------------------~~~~~~~~~~ 75 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN-----------------------RLLEPRGLLP 75 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH-----------------------HHHGGGTCGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH-----------------------HHHHHhcccc
Confidence 4789999999999999999999999999864 5666655543321 1111110000
Q ss_pred hhcCC----CHHHHHHHHHHHHhH--cCCCCCCCCCCCCChhHHHHHHHH-HHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 191 MIYGM----DESIWLFQMRKYSHV--LKLPNLERPVKYLSGGQKRRLSFT-IAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 191 ~l~g~----~~~~~~~~~~~ll~~--l~L~~~~~~~~~LSGGqkQRlsLA-~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
..+. ......+.+..+... +.++..++ ...+|+||+||+++| ++++.++.++++|||. |.
T Consensus 76 -~~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~ 142 (208)
T 3c8u_A 76 -RKGAPETFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR 142 (208)
T ss_dssp -GTTSGGGBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG
T ss_pred -cCCCCchhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH
Confidence 0011 111111122222111 11121222 335799999999998 8888888888888884 21
Q ss_pred HHHHHHhCCcEEEEEcCChhHH-hc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858 264 LLQVFVGKGRTVIMTTQYIEEA-ND-ASEVAFLYKGRIIAQDSPDGFKSK 311 (457)
Q Consensus 264 ~i~~~~~~g~TIIisTH~~~ea-~~-~dri~im~~GkI~~~gs~~~l~~~ 311 (457)
.+ .+.--.+++++++.+.. ++ +.|. +..|. +++++...
T Consensus 143 ~l---~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 143 DL---TAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp GG---GGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred HH---HHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 11 12223678888888763 33 5552 34454 55665544
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.31 E-value=2.3e-16 Score=149.47 Aligned_cols=179 Identities=15% Similarity=0.056 Sum_probs=74.3
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCceEEEEcCccCCCCchh-hhcCcEEEEcCCCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLKNISQGEIWVLGGHPASIYHK-TAGSKVGYMPQELAMFGELT 181 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll~p~sG~I~i~G~~~~~~~~~-~~r~~IGyvpQ~~~L~~~lT 181 (457)
.+..+++||++++|+++||+||||||||||+++|+ |++++. .++......... .....++|.+++...|..++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 34678999999999999999999999999999999 998652 233322211100 01123457777665555444
Q ss_pred HHHHHH----HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHH-HHH-HHhhcCCceEEEeCCCCCCCH
Q psy10858 182 IKETLN----FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL-SFT-IAILHKPQLIILDEPCVGVDP 255 (457)
Q Consensus 182 V~EnL~----~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRl-sLA-~ALl~~P~lLILDEPTsGLDp 255 (457)
+.+++. ++...++.+.+.+.+. ++.-.....+-.+. -....++++ .-+ ..++..|+..+++|++.+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~ 163 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRKNLEDN----VDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA 163 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECTTHHHH----HHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred hcCceehhhhhccccCCCCHHHHHHH----HHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence 444433 2222333332222222 22211000110000 011123333 111 234567788888999999987
Q ss_pred HHHHHHHHHHHHHH-----hCCcEEEEEcCChhHHh-ccCeEE
Q psy10858 256 LVRKRMWDLLQVFV-----GKGRTVIMTTQYIEEAN-DASEVA 292 (457)
Q Consensus 256 ~~r~~i~~~i~~~~-----~~g~TIIisTH~~~ea~-~~dri~ 292 (457)
.+...+.+.+.... .....+++++|+++++. .+++++
T Consensus 164 ~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 164 DDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp --------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 77776665443321 12456778888888774 355544
No 152
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.30 E-value=3.1e-14 Score=142.68 Aligned_cols=117 Identities=19% Similarity=0.131 Sum_probs=68.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCCCC----CCCHHH
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAMFG----ELTIKE 184 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~~----~lTV~E 184 (457)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ .|+..+... ...+..+||++|.+.+.. .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 556789999999999999999999999999999999998 787665322 111222799999997755 6899 8
Q ss_pred HHH-Hhhhh---------cC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858 185 TLN-FFGMI---------YG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR 230 (457)
Q Consensus 185 nL~-~~~~l---------~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR 230 (457)
++. ++..+ .+ ....+...++.++++.+++.. ..+...+|+.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 883 22221 12 122223456788899999864 334455677777773
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.28 E-value=3e-13 Score=127.27 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=90.2
Q ss_pred eeEeee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858 105 VVLNNC-SLVVKRREFFVLLGASSAGKTTLL-KAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182 (457)
Q Consensus 105 ~aL~~v-s~~I~~Gei~gLlGpNGaGKTTLL-k~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV 182 (457)
..||.+ .--+++|++++|.||||||||||+ +++.+..+...+.+++.+... ..........+|+.+|+......+++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 346666 567899999999999999999995 455555554445555544321 10101111123333332110001111
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCC--CHHH
Q psy10858 183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGV--DPLV 257 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGL--Dp~~ 257 (457)
.+. + . ..++. ...+.....-+....+.+..++.++ .+|+++++|+|++.+ |+..
T Consensus 89 ~~~-------~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~ 147 (247)
T 2dr3_A 89 VDA-------F---T-----------AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAM 147 (247)
T ss_dssp EEC-------S---T-----------TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGG
T ss_pred Eec-------c---h-----------hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHH
Confidence 000 0 0 00000 0001111111222333333444443 579999999999988 6644
Q ss_pred HHH-HHHHHHHHHhCCcEEEEEcCChhH--------Hh-ccCeEEEEeC
Q psy10858 258 RKR-MWDLLQVFVGKGRTVIMTTQYIEE--------AN-DASEVAFLYK 296 (457)
Q Consensus 258 r~~-i~~~i~~~~~~g~TIIisTH~~~e--------a~-~~dri~im~~ 296 (457)
+++ +..+.+.+++.|+|||+++|...+ ++ .||.|+.|+.
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 444 444466666789999999998876 33 3899999864
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.27 E-value=4e-12 Score=126.26 Aligned_cols=132 Identities=18% Similarity=0.122 Sum_probs=94.7
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
+..+++++.|+. .. ++++|+ +|++++++|+||+||||++..|+|++.+..|+|.+.+.++.... ..
T Consensus 77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~--~~------ 142 (295)
T 1ls1_A 77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA--AR------ 142 (295)
T ss_dssp HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH--HH------
T ss_pred HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh--HH------
Confidence 456677888876 32 788998 99999999999999999999999999999999999876653210 00
Q ss_pred EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249 (457)
Q Consensus 170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP 249 (457)
+.+. .+.+..+++..... ...+..+.+|.+++.+...+++++|+|||
T Consensus 143 --------------~ql~------------------~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 143 --------------EQLR------------------LLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTA 189 (295)
T ss_dssp --------------HHHH------------------HHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred --------------HHHH------------------HhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 0110 01122344321000 01233455788999998899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHH
Q psy10858 250 -CVGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 250 -TsGLDp~~r~~i~~~i~~~ 268 (457)
++++|......++++.+..
T Consensus 190 p~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 190 GRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CCSSCCHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHhhhc
Confidence 9999998888888876654
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.23 E-value=3.6e-12 Score=127.57 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=81.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF 188 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~ 188 (457)
.++++.++|++++|+|+|||||||+++.|+|.+.++.|+|.+.+.+.... + ..+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~-------------a~eqL-- 151 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A-------------AIEQL-- 151 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H-------------HHHHH--
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H-------------HHHHH--
Confidence 45677789999999999999999999999999999889998877654210 0 11222
Q ss_pred hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHH---HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858 189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL---SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265 (457)
Q Consensus 189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRl---sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i 265 (457)
..+.+.++++. +..+|+|+.|++ ++++|+..+|+++|+|||.. ......+++.+
T Consensus 152 ----------------~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL 208 (306)
T 1vma_A 152 ----------------KIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL 208 (306)
T ss_dssp ----------------HHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred ----------------HHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence 22334455532 335789999999 89999999999999999974 33444555544
Q ss_pred HH
Q psy10858 266 QV 267 (457)
Q Consensus 266 ~~ 267 (457)
..
T Consensus 209 ~~ 210 (306)
T 1vma_A 209 RK 210 (306)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.21 E-value=5.4e-16 Score=151.14 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=98.4
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
..+++++.+.|+. ..+++++++++++| ++|+||||||||||+++|+|... .|.|.+++.++.........+.++
T Consensus 49 ~~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 49 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 3456677777876 77899999999999 89999999999999999999985 789999886543211112234577
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELA-MFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+++|... ..+.+++.|++.......+. ...+....+..+ +.+|||||+||+.+++|+.++|++
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH------------HHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH------------HHHHhCCCCCCCEEEEEecCCchh
Confidence 8888753 55667777887543322111 112222233332 245899999999999999999987
Q ss_pred EEEeCC
Q psy10858 244 IILDEP 249 (457)
Q Consensus 244 LILDEP 249 (457)
||++
T Consensus 191 --ld~~ 194 (278)
T 1iy2_A 191 --LDPA 194 (278)
T ss_dssp --SCHH
T ss_pred --CCHh
Confidence 5544
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.20 E-value=4.1e-16 Score=149.43 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=106.0
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
..+++++++.|++ ..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++.........+.++
T Consensus 25 ~~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 25 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 3445677777776 67899999999999 89999999999999999999885 789999886542211112234577
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELA-MFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+++|... ..+.+++.|++...+...+. ..++..+.+..++ ..|||||+||+.+++|+.++|++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7888753 45667777777543322211 1122222233332 35789999999999999999987
Q ss_pred EEEeCCCC------------CCCHHHHHHHHHH
Q psy10858 244 IILDEPCV------------GVDPLVRKRMWDL 264 (457)
Q Consensus 244 LILDEPTs------------GLDp~~r~~i~~~ 264 (457)
||++.. -.|...|..+|+.
T Consensus 167 --ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 197 (254)
T 1ixz_A 167 --LDPALLRPGRFDRQIAIDAPDVKGREQILRI 197 (254)
T ss_dssp --SCGGGGSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred --CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHH
Confidence 677643 2356666666654
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=1.2e-11 Score=131.00 Aligned_cols=52 Identities=15% Similarity=0.001 Sum_probs=49.3
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~ 156 (457)
..+|+++||+|++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4579999999999 999999999999999999999999999999999998775
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.14 E-value=4e-11 Score=121.90 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=83.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l 192 (457)
-+++|+++.|.||||+|||||+..++.......|.+.+ +.-+..+.+ . .+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly-------------------i~~E~~~~~---~------~a~~ 108 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF-------------------IDAEHALDP---E------YAKK 108 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-------------------EESSCCCCH---H------HHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE-------------------EECCCCcCH---H------HHHH
Confidence 57899999999999999999988887654333333332 222211100 0 0111
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcC--CceEEEeCCCCCC----------CH---HH
Q psy10858 193 YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK--PQLIILDEPCVGV----------DP---LV 257 (457)
Q Consensus 193 ~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLILDEPTsGL----------Dp---~~ 257 (457)
.|++.+ .+-+ . ...+. .|-+.++++++.+ |+++++|||++.+ |+ ..
T Consensus 109 lG~~~~-----------~l~i---~---~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q 169 (349)
T 2zr9_A 109 LGVDTD-----------SLLV---S---QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ 169 (349)
T ss_dssp TTCCGG-----------GCEE---E---CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred cCCCHH-----------HeEE---e---cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence 122110 0000 0 01122 2345677777654 9999999999998 43 12
Q ss_pred ----HHHHHHHHHHHHhCCcEEEEEcCChhH----------------Hhc-cCeEEEEeCCeEEEecC
Q psy10858 258 ----RKRMWDLLQVFVGKGRTVIMTTQYIEE----------------AND-ASEVAFLYKGRIIAQDS 304 (457)
Q Consensus 258 ----r~~i~~~i~~~~~~g~TIIisTH~~~e----------------a~~-~dri~im~~GkI~~~gs 304 (457)
.+.+.++...+++.|+|||+++|.... ++. ||.++.++.++++..|+
T Consensus 170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 222333333345679999999996531 333 78888888877665543
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.06 E-value=2.1e-12 Score=139.79 Aligned_cols=168 Identities=11% Similarity=0.035 Sum_probs=109.3
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcCcEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~~IG 168 (457)
+.-++++.-||. ..+++++++.+.+|+.++|+||||+|||||+++|+|++++.. |.+.+++..... ....++
T Consensus 35 ~rp~~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~ 107 (604)
T 3k1j_A 35 VPEKLIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIK 107 (604)
T ss_dssp CCSSHHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEE
T ss_pred ccccccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEE
Confidence 334555666777 789999999999999999999999999999999999999887 888887765532 235689
Q ss_pred EEcCCCC----------------------CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCC
Q psy10858 169 YMPQELA----------------------MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKL-PNLERPVKYLS 224 (457)
Q Consensus 169 yvpQ~~~----------------------L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LS 224 (457)
|+|+... .+..+++.+|+.....- .+.+. .........+.++. .......+.+|
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~ 185 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLG 185 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CC
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCcc
Confidence 9987541 11222222222110000 00000 00000001122332 11223346799
Q ss_pred hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10858 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267 (457)
Q Consensus 225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~ 267 (457)
+|++|++..++....++.+|+|||... |++..+..+.+.++.
T Consensus 186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 186 TPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999999999988 899998888888764
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.05 E-value=4e-12 Score=135.48 Aligned_cols=164 Identities=10% Similarity=0.057 Sum_probs=98.9
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
.+++++.++..+.|.|++||||||+++.|.. +..++.|++.+.+.+......... . .-+.+.. +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~------~lPhl~~--~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-E------GIPHLLT--EVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-T------TCTTBSS--SCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-c------cCCcccc--eeecCH
Confidence 4778889999999999999999999998876 566667877776665543211111 0 0111111 111122
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhHcCCCCC---C-CCCCCCChhHHHHH----------HHHHHhhcCCc-eEEEeCCCC
Q psy10858 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNL---E-RPVKYLSGGQKRRL----------SFTIAILHKPQ-LIILDEPCV 251 (457)
Q Consensus 187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~---~-~~~~~LSGGqkQRl----------sLA~ALl~~P~-lLILDEPTs 251 (457)
.......+....+..+|. +++...++... + +....+|+||+|+. .+|+++...|. ++++||+++
T Consensus 230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ 308 (512)
T 2ius_A 230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD 308 (512)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence 111111111134455554 56666776432 1 12245788888753 35666778898 899999999
Q ss_pred CCCHHHHHHHHHHHH----HHHhCCcEEEEEcCChh
Q psy10858 252 GVDPLVRKRMWDLLQ----VFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 252 GLDp~~r~~i~~~i~----~~~~~g~TIIisTH~~~ 283 (457)
-+|.. ...+.+.+. .-++-|.++|++||.+.
T Consensus 309 ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 309 LMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88833 233444433 33444889999999987
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.04 E-value=6.3e-12 Score=120.82 Aligned_cols=76 Identities=17% Similarity=0.056 Sum_probs=52.5
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------c
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--------Y 159 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--------~ 159 (457)
..|+++|+...|+. +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++... .
T Consensus 8 ~~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 8 RSLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred eEEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 35788888665531 466666 89999999999999999999999999999999999876221 1
Q ss_pred hhhhcCcEEEEcCC
Q psy10858 160 HKTAGSKVGYMPQE 173 (457)
Q Consensus 160 ~~~~r~~IGyvpQ~ 173 (457)
....+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 12235679999984
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.03 E-value=3.9e-11 Score=125.50 Aligned_cols=178 Identities=12% Similarity=0.060 Sum_probs=107.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcE-EEEcCCCCCCCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKV-GYMPQELAMFGELT 181 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~I-GyvpQ~~~L~~~lT 181 (457)
...|+++...+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+... .....++ +... ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~---~~l~~r~~~~~~-------~~~ 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA---QQLVMRMLCAEG-------NIN 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH---HHHHHHHHHHHH-------TCC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHHHHc-------CCC
Confidence 4578888888999999999999999999999999987765444 45554433221 1111110 0000 001
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCCCH---
Q psy10858 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGVDP--- 255 (457)
Q Consensus 182 V~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGLDp--- 255 (457)
. +.+. ...+...+ ..++.+.++.+.... .-.....+|.++.+ +.|++++ ++|+++++|+++...++
T Consensus 260 ~-~~l~----~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 260 A-QNLR----TGKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp H-HHHH----TSCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred H-HHHh----cCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 1 1110 01133332 233444444443321 11124579999987 5666665 78999999999987743
Q ss_pred -----HHHHHHHHHHHHHH-hCCcEEEEEcC---------C--hh--------HHhc-cCeEEEEeCCeE
Q psy10858 256 -----LVRKRMWDLLQVFV-GKGRTVIMTTQ---------Y--IE--------EAND-ASEVAFLYKGRI 299 (457)
Q Consensus 256 -----~~r~~i~~~i~~~~-~~g~TIIisTH---------~--~~--------ea~~-~dri~im~~GkI 299 (457)
.....+.+.++.+. +.|++||+++| + +. .+++ ||.|++|+.++.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23345555555544 55999999999 2 22 3444 899999987654
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=8e-11 Score=107.78 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266 (457)
Q Consensus 230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~ 266 (457)
.+.+|++++.+|+++++| ||++|+...+++++.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 467899999999999999 99999999999999854
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.82 E-value=1.3e-10 Score=106.62 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266 (457)
Q Consensus 231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~ 266 (457)
...|++++.+|+++++| ||++|+...+.+++.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999999998843
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.81 E-value=1.3e-11 Score=126.95 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=86.6
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCCCH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGELTI 182 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~lTV 182 (457)
..+++++++++++|++++|+||||||||||+++|+|. .+|++...+ ..... ....+|++||... ++++++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~~---~~~~lg~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLDR---LNFELGVAIDQFLVVFEDVKG 227 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTTT---HHHHHGGGTTCSCEEETTCCC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccchh---HHHHHHHhcchhHHHHHHHHH
Confidence 3689999999999999999999999999999999995 468776511 11111 1123667777764 3344433
Q ss_pred HHHHHHhhhhcCCCH-HH--HHHHHHHHHh---------------HcCCC--CCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858 183 KETLNFFGMIYGMDE-SI--WLFQMRKYSH---------------VLKLP--NLERPVKYLSGGQKRRLSFTIAILHKPQ 242 (457)
Q Consensus 183 ~EnL~~~~~l~g~~~-~~--~~~~~~~ll~---------------~l~L~--~~~~~~~~LSGGqkQRlsLA~ALl~~P~ 242 (457)
...+ ..+... .. ....+...++ ..-+. ..+.....+++|++||+..+.+++..|+
T Consensus 228 ~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 228 TGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp STTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 2211 001100 00 0111222222 11111 1356677899999999999988999999
Q ss_pred eEE-EeCCCC
Q psy10858 243 LII-LDEPCV 251 (457)
Q Consensus 243 lLI-LDEPTs 251 (457)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 998 999997
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.73 E-value=4.1e-10 Score=104.18 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=48.0
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
+-+..++.++|++++|+|||||||||++++|+|.+ |.++++|.++.... ...+..+|+++|+..+++.+++.+++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHH
Confidence 33344677899999999999999999999999987 89999987764321 11223467888875544444444443
No 168
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.72 E-value=1.6e-11 Score=130.58 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.7
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG 168 (457)
..+++++...|.+ ..+++++++.+++| +.|+||||+|||||+++|+|... .|.+.++|.++.........++++
T Consensus 40 k~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 40 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 3445566656665 56789999999999 89999999999999999999875 788999887764322122234566
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhhhhcC----CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858 169 YMPQELA-MFGELTIKETLNFFGMIYG----MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243 (457)
Q Consensus 169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g----~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l 243 (457)
+++|... ..+.+.+.|++.......+ ...++....+..++. .||||++|+..+++|..++|++
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~ 181 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI 181 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh
Confidence 7777753 3455556666643322111 112233333444433 4788999999999999999988
Q ss_pred EEEeCCCCC------------CCHHHHHHHHHH
Q psy10858 244 IILDEPCVG------------VDPLVRKRMWDL 264 (457)
Q Consensus 244 LILDEPTsG------------LDp~~r~~i~~~ 264 (457)
|||+..- -|...|..|++.
T Consensus 182 --LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 182 --LDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp --SCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred --cCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 8998653 466677776654
No 169
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.71 E-value=3.7e-09 Score=97.57 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=77.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES 198 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~ 198 (457)
++||+|+|||||||+.++|+++ |...+++..+. + .+. .+ . +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~-------~-~~~-~~-------~-~----------------- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA-------R-EVV-AK-------D-S----------------- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH-------H-HTT-CS-------S-C-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH-------H-HHc-cC-------C-h-----------------
Confidence 6899999999999999999993 55555443221 0 000 00 0 0
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy10858 199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278 (457)
Q Consensus 199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIis 278 (457)
..+.++.+.+|.... .+.|+.+|..++..+..+|+.+..+ .+.++|..++.+++.+... .+.+||+.
T Consensus 45 ---~~~~~i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~ 111 (206)
T 1jjv_A 45 ---PLLSKIVEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFV 111 (206)
T ss_dssp ---HHHHHHHHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEE
T ss_pred ---HHHHHHHHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEE
Confidence 012233344443211 3678899999999888888754433 4567888888887765432 35689999
Q ss_pred cCChhHH--h-ccCeEEEEe
Q psy10858 279 TQYIEEA--N-DASEVAFLY 295 (457)
Q Consensus 279 TH~~~ea--~-~~dri~im~ 295 (457)
+|.+.+. . .||++++++
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEE
T ss_pred echhhhcCcHhhCCEEEEEE
Confidence 9998876 3 489888874
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.68 E-value=5.8e-09 Score=94.26 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=69.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc--cCCCCch----hhhcCcEEEEcCCCCC-C-C-
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYH----KTAGSKVGYMPQELAM-F-G- 178 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~--~~~~~~~----~~~r~~IGyvpQ~~~L-~-~- 178 (457)
+++++++.+| +++|+||||||||||+++|.+++.++.|...-.+. +...... ......|.+++|++.- + +
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6899999999 99999999999999999999999887765432221 1111000 0123468999998632 1 1
Q ss_pred --CCCHHHHHHHh----hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHH
Q psy10858 179 --ELTIKETLNFF----GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS 232 (457)
Q Consensus 179 --~lTV~EnL~~~----~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRls 232 (457)
.+++...+.-. ..+.+.. .....+.+++..+++...+ +.-++.|+.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~ 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG--YNIVLQGDITKFI 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence 12322211000 0011111 1134566777778874321 2346777776654
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.67 E-value=2.2e-09 Score=109.64 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=81.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN-----------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~-----------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~ 187 (457)
+++|+|++|||||||++.|+|... ++.|.|.++|.++. .....|++.+.+.-.-+ ..+..+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve-~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVD-AFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHH-HHHHHHH
Confidence 389999999999999999999876 57788888775431 11224444442211000 0111111
Q ss_pred Hhh------hhcCCC--H---HHHHHHHHHHHhHcCCCC-C----CCCCCCCChhHHHHHHHH----HHh-hcCCceEEE
Q psy10858 188 FFG------MIYGMD--E---SIWLFQMRKYSHVLKLPN-L----ERPVKYLSGGQKRRLSFT----IAI-LHKPQLIIL 246 (457)
Q Consensus 188 ~~~------~l~g~~--~---~~~~~~~~~ll~~l~L~~-~----~~~~~~LSGGqkQRlsLA----~AL-l~~P~lLIL 246 (457)
... .....+ . ....+.+.++++.+++.. . ..++..+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 110 011111 1 112223455666665532 1 344667898999988877 555 444554
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q psy10858 247 DEPCVGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 247 DEPTsGLDp~~r~~i~~~i~~~ 268 (457)
+|+|++|....+.+++.+...
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHH
Confidence 899999999999999986543
No 172
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.64 E-value=2.2e-08 Score=102.20 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=52.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE-EEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I-~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~ 187 (457)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++..... ....+++|+.+|+..+....++.+.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHHHH
Confidence 488999999999999999999999999887777765 565543322 123356777777765555556665543
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=2.4e-09 Score=103.27 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=51.1
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---cCCCCCceEEE--------EcCccCCC-CchhhhcCcEEEEcC
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV---GLKNISQGEIW--------VLGGHPAS-IYHKTAGSKVGYMPQ 172 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~---Gll~p~sG~I~--------i~G~~~~~-~~~~~~r~~IGyvpQ 172 (457)
.++++.+ ++|++++|+|||||||||++++|+ |+..+++|.++ .+|.++.. ......++.+|+++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999998 88877632 223345677999997
Q ss_pred CC
Q psy10858 173 EL 174 (457)
Q Consensus 173 ~~ 174 (457)
..
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.62 E-value=1.1e-08 Score=93.68 Aligned_cols=60 Identities=22% Similarity=0.152 Sum_probs=40.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCC
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELA 175 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~ 175 (457)
++|++|++++|+|||||||||++++|++++.|+.| .+....... .. ....+++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQM---RE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCC---CT-TCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCC---CC-CccCCCceEEcCHH
Confidence 47899999999999999999999999999977666 332111111 10 11234778888654
No 175
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.62 E-value=3.5e-08 Score=109.96 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-cCChhHHh-ccC
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMT-TQYIEEAN-DAS 289 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIis-TH~~~ea~-~~d 289 (457)
+..+.-+|.|+.+|..++.+++.++++||+|||.. +||......+++.+...+.+..+|++| ||+.+.+. .++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 44566789999999999999999999999999996 999887777766654444456778885 99988764 344
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=2e-09 Score=104.66 Aligned_cols=52 Identities=21% Similarity=0.120 Sum_probs=36.5
Q ss_pred CceEEEee-EEEe-CCCCceeEeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 88 EADEGKNT-EKEE-LKPSNVVLNNCSLVVKR---REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 88 ~~Iei~nl-sk~y-g~~~~~aL~~vs~~I~~---Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++++|+ +++| +. ..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999 9999 55 7899999999999 9999999999999999999999865
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.61 E-value=5.5e-08 Score=102.80 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=77.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
...++++++.+++| +.|.||+|+|||||+++|++.... .+-++.-. .+. .
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is~~-~~~-~---- 87 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHISGS-DFV-E---- 87 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEEGG-GTT-T----
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCCHH-HHH-H----
Confidence 44577788888888 789999999999999999984310 01111000 000 0
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC----------CCCC
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP----------CVGV 253 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP----------TsGL 253 (457)
..++ .|++++|..+++|....|.+|++||+ +.|.
T Consensus 88 ----------------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 88 ----------------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp ----------------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred ----------------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 0000 26778888999999999999999999 4477
Q ss_pred CHHHHHHHHHHHHHHH----hCCcEEEEEcCChhHH
Q psy10858 254 DPLVRKRMWDLLQVFV----GKGRTVIMTTQYIEEA 285 (457)
Q Consensus 254 Dp~~r~~i~~~i~~~~----~~g~TIIisTH~~~ea 285 (457)
|+...+.+.+++..+. ..++.||.+||..+.+
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 7777776666665542 3578999999998654
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.59 E-value=7e-08 Score=97.56 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM 195 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~ 195 (457)
..-.++++|++|+|||||++.|+|... . +.+.+... ....++.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t-----~~~~~~~~~~~~~-------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT-----RGINVGQFEDGYF-------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS-----SCEEEEEEEETTE--------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee-----eceeEEEEEecCc--------------------
Confidence 344789999999999999999999752 1 21211111 1123444443211
Q ss_pred CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy10858 196 DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD-EPCVGVDPLVRKRMWDLLQVFVGKGR 273 (457)
Q Consensus 196 ~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD-EPTsGLDp~~r~~i~~~i~~~~~~g~ 273 (457)
.+..++.+. .+..+..+|+|++|++. +.+...++-++++| +|++|+|......+++.+..... ++
T Consensus 215 -----------~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~ 281 (357)
T 2e87_A 215 -----------RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DL 281 (357)
T ss_dssp -----------EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TS
T ss_pred -----------eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CC
Confidence 012223322 34567789999998876 66666788899999 99999999988887777554333 77
Q ss_pred EEEEEc--CChh
Q psy10858 274 TVIMTT--QYIE 283 (457)
Q Consensus 274 TIIisT--H~~~ 283 (457)
.+|++. ||+.
T Consensus 282 piilV~NK~Dl~ 293 (357)
T 2e87_A 282 PFLVVINKIDVA 293 (357)
T ss_dssp CEEEEECCTTTC
T ss_pred CEEEEEECcccC
Confidence 788777 8874
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.59 E-value=8.2e-09 Score=103.69 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=60.7
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhh-----cCcEEEE-cCCCCC
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTA-----GSKVGYM-PQELAM 176 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~-----r~~IGyv-pQ~~~L 176 (457)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.++..... ... +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 378999999999999999999999999999999999999999998877643210 111 5679999 676554
Q ss_pred CCCCCHHHHH
Q psy10858 177 FGELTIKETL 186 (457)
Q Consensus 177 ~~~lTV~EnL 186 (457)
.+..++++++
T Consensus 175 ~p~~~~~~~l 184 (320)
T 1zu4_A 175 DPASVVFDAI 184 (320)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4433344443
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=1.5e-09 Score=100.44 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=47.7
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE--EEcCccC
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI--WVLGGHP 155 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I--~i~G~~~ 155 (457)
+|++..++. ..+.+.+++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 467777777 778889999999999999999999999999999999997 67988 8887654
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=1.3e-08 Score=93.04 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIW 149 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~ 149 (457)
|++++|+||||||||||+++|+|+++++.|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 678999999999999999999999986655443
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.53 E-value=1.5e-08 Score=111.17 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=84.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF 188 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~ 188 (457)
|+++++|..++|+|+||+|||||++.|+|...+ ..|+| .+|..+........++.+++.+|...++.. ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl-- 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL-- 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence 467889999999999999999999999977654 67888 566655544444445677777776554332 111111
Q ss_pred hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858 189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268 (457)
Q Consensus 189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~ 268 (457)
++.+... .++ .......-..+..++++| |+.|+++..++ +|+.+
T Consensus 79 ----------------------iDTpG~~----~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~--- 122 (665)
T 2dy1_A 79 ----------------------LDAPGYG----DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVA--- 122 (665)
T ss_dssp ----------------------EECCCSG----GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHH---
T ss_pred ----------------------EeCCCcc----chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHH---
Confidence 1111000 011 112222234678899999 99999988773 44443
Q ss_pred HhCCcEEEEEcCChhH
Q psy10858 269 VGKGRTVIMTTQYIEE 284 (457)
Q Consensus 269 ~~~g~TIIisTH~~~e 284 (457)
.+.+..+|++.|.++.
T Consensus 123 ~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 123 ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHTTCCEEEEEECGGG
T ss_pred HHccCCEEEEecCCch
Confidence 3457889999998875
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.52 E-value=1.2e-08 Score=103.46 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=36.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~ 156 (457)
+++.+++|+|++|||||||++.|+|.+.+++|+|.+.+.++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 467899999999999999999999999888899888776654
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.51 E-value=1.1e-07 Score=96.04 Aligned_cols=173 Identities=15% Similarity=0.109 Sum_probs=89.1
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGEL 180 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~l 180 (457)
..+|++++++++ .++|+|++|||||||++.|+| +++..+|.+......+............+..++.+. .+.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999999 899999999999999999999 567777765432221110000001123444443332 11111
Q ss_pred -CHHHHH-----HHhhhhcCCCHHHHHHHH----HHHHhHcCCCCCCC--CCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858 181 -TIKETL-----NFFGMIYGMDESIWLFQM----RKYSHVLKLPNLER--PVKYLSGGQKRRLSFTIAILHKPQLIILDE 248 (457)
Q Consensus 181 -TV~EnL-----~~~~~l~g~~~~~~~~~~----~~ll~~l~L~~~~~--~~~~LSGGqkQRlsLA~ALl~~P~lLILDE 248 (457)
.+.+.+ ...+...+.+.+.+.-.+ ..-+..++++...+ ..++.++.++++..++++.+.+|+++||.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 122111 111111111100000000 00022334443222 234577899999999999999999888884
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcC
Q psy10858 249 PCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQ 280 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH 280 (457)
..+..|... ...+++++.+...| .+|++.|.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 344455443 33455555554444 57777776
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.38 E-value=2.6e-07 Score=93.63 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=84.1
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
...|+.+.--+.+|+++.|.|++|+|||||+..++....... ..+.|+.= +++..
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------------------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD-------------------RGVAVFSL------EMSAE 87 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------------------CEEEEEES------SSCHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEeC------CCCHH
Confidence 445777776799999999999999999999988875432211 23455432 34544
Q ss_pred HHHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858 184 ETLN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 184 EnL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
+... +.+...+++.. .+ .-+.||.++++|+..|...+.+++++|.|+|...+| .|.
T Consensus 88 ql~~Rlls~~~~v~~~----------------~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~ 144 (338)
T 4a1f_A 88 QLALRALSDLTSINMH----------------DL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIR 144 (338)
T ss_dssp HHHHHHHHHHHCCCHH----------------HH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHH
T ss_pred HHHHHHHHHhhCCCHH----------------HH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHH
Confidence 4322 11111222211 11 114799999999999999999999999999975533 344
Q ss_pred HHHHHH-HhC-CcEEEEEcC
Q psy10858 263 DLLQVF-VGK-GRTVIMTTQ 280 (457)
Q Consensus 263 ~~i~~~-~~~-g~TIIisTH 280 (457)
..++.+ ++. |..+|++-|
T Consensus 145 ~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 145 LQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEec
Confidence 444333 344 788888854
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.37 E-value=1e-06 Score=87.87 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=36.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEcCChhHH
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---KGRTVIMTTQYIEEA 285 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~---~g~TIIisTH~~~ea 285 (457)
.+|.+|++||+... |+.....+.++++.... .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 56889999999876 98888888888655444 588999999998543
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=2.4e-07 Score=84.24 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=30.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEE
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWV 150 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i 150 (457)
.+|++++|+||||||||||+++|+++.++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999999874 4565544
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.22 E-value=3.4e-07 Score=86.58 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=35.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
+.+.++|++++|.|+|||||||++++|+|+ .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 345589999999999999999999999998 78899888654
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=5.3e-07 Score=83.09 Aligned_cols=38 Identities=29% Similarity=0.170 Sum_probs=24.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999866
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.19 E-value=2.8e-07 Score=85.27 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=38.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~ 156 (457)
.++|++++|+|+|||||||++++|++++++..|.|.+.+.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 5789999999999999999999999999888999988766543
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=3.5e-06 Score=88.06 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
++.+++++|+||+||||++..|++.+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 689999999999999999999999998887888775544
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.16 E-value=4.4e-08 Score=98.63 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred EeeEEEeCCCCceeEeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCceEEEE
Q psy10858 93 KNTEKEELKPSNVVLNNCSLVVKRRE------FFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWV 150 (457)
Q Consensus 93 ~nlsk~yg~~~~~aL~~vs~~I~~Ge------i~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i 150 (457)
+.+++.|+. +.+|++++..+.+++ ++||+||||||||||+++|.|++. |++|.+.+
T Consensus 64 rll~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 64 RLLSFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 455666777 788999999998887 999999999999999999999987 45555443
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.14 E-value=2.4e-08 Score=100.62 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=57.6
Q ss_pred ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
+++.+++.++|+. ..+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+.+.++
T Consensus 30 ~ie~~~~~~~~~~--~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALS--TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHH--HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHH--HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 5777888888877 7889999999999999999999999999999999999988888888766655
No 194
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=98.11 E-value=1.1e-06 Score=78.65 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=45.5
Q ss_pred hcCCCCCCCeEEEEeccCCcccccCCCCCCCCCCCCCcccCCcCchhhhHHHHhhccCccccc--CCCCHHHHHHHhhcC
Q psy10858 368 TMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLK--YFPDEESAEEALKNE 445 (457)
Q Consensus 368 ~i~~d~~~l~~av~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g 445 (457)
.+..|++++++||||+|.+. +||++++.|+ |..+. ++.|.+||.++|++|
T Consensus 3 ~~~~~~~~~~vaVvd~D~s~--------------------------~s~~l~~~l~--~~~~~~~~~~s~~ea~~~l~~g 54 (156)
T 3cni_A 3 TVEKSTVGQKVAIVREDTGT--------------------------IAELAEKALG--NMVDIVYAGSDLKEAEEAVKKE 54 (156)
T ss_dssp --------CEEEEEECCCSH--------------------------HHHHHHHHHH--TSSEEEEEESCHHHHHHHHHHH
T ss_pred hhcCCCCCCcEEEEECCCCH--------------------------HHHHHHHHhc--CcEEEEecCCCHHHHHHHHHcC
Confidence 35689999999999999754 7899999997 42222 247999999999999
Q ss_pred ceEEEEEcCCCC
Q psy10858 446 SLSLLLEGSPDL 457 (457)
Q Consensus 446 ~~~~~~~~~~~~ 457 (457)
+++++|.||+|+
T Consensus 55 ~~~~~l~IP~~F 66 (156)
T 3cni_A 55 KAPAIIVIPKGF 66 (156)
T ss_dssp TCSEEEEECTTH
T ss_pred CeeEEEEECcch
Confidence 999999999984
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=2e-09 Score=107.48 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=44.8
Q ss_pred eeEEEeCCCCceeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858 94 NTEKEELKPSNVVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150 (457)
Q Consensus 94 nlsk~yg~~~~~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i 150 (457)
+++..+|. ..+++.++..|+.|++ +.|.||+|+||||+++++++.+.+..+.+.+
T Consensus 23 ~~~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 23 TLDEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred cHHHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 34445566 7789999999999999 9999999999999999999988766654333
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=1.5e-06 Score=80.83 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
++|++++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.09 E-value=4.7e-07 Score=94.38 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=50.7
Q ss_pred EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858 92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157 (457)
Q Consensus 92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~ 157 (457)
.+++++.|+. .. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus 79 ~~~L~~~~~~--~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 79 YEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHhCC--Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 3457777876 33 678888 999999999999999999999999999999999998876643
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=1.2e-06 Score=86.81 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNIS 144 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~ 144 (457)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999877543
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.08 E-value=9.4e-07 Score=79.12 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~ 156 (457)
.+|++++|+|+|||||||++++|++.+ |.+++++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 469999999999999999999999975 78888876553
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.07 E-value=7.9e-08 Score=102.88 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=52.4
Q ss_pred eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858 90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY 169 (457)
Q Consensus 90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy 169 (457)
+-++++.+.|+. ..+++++++++ +|++++|+||||+|||||+++|++.+.+..|.|.+.|...........++.+|+
T Consensus 84 ~G~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 84 HGLEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp SSCHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred ccHHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 345566667766 67888999988 899999999999999999999999999999999887643221111122345676
Q ss_pred EcCC
Q psy10858 170 MPQE 173 (457)
Q Consensus 170 vpQ~ 173 (457)
++|.
T Consensus 161 ~~~~ 164 (543)
T 3m6a_A 161 MPGR 164 (543)
T ss_dssp ---C
T ss_pred CchH
Confidence 6654
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.03 E-value=9.6e-07 Score=94.91 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=37.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEE-EcCccC
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIW-VLGGHP 155 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~-i~G~~~ 155 (457)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 775 777543
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=1.8e-06 Score=81.18 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=27.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556999999999999999999999999875
No 203
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.00 E-value=2.3e-07 Score=91.81 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=76.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC---CCCCCCHHHHHHHhhh
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA---MFGELTIKETLNFFGM 191 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~---L~~~lTV~EnL~~~~~ 191 (457)
.++.+++|+|++|||||||++.|+|... .+-...+.. ...+..|+++++.. +++ |.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~t----Tr~~~~gi~~~~~~~i~~iD--Tp--------- 64 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQT----TRHRIVGIHTEGAYQAIYVD--TP--------- 64 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSC----CSSCEEEEEEETTEEEEEES--SS---------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCc----ceeeEEEEEEECCeeEEEEE--Cc---------
Confidence 3445899999999999999999999732 121111111 12345677777542 111 11
Q ss_pred hcCCC-HH--HHHHH----HHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCCCHHH-HH
Q psy10858 192 IYGMD-ES--IWLFQ----MRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGVDPLV-RK 259 (457)
Q Consensus 192 l~g~~-~~--~~~~~----~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGLDp~~-r~ 259 (457)
|.. .. ...+. +...++..++.. .|. ..+|+|++ .++.++. ..|.++++ +.+|... +.
T Consensus 65 --G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 65 --GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp --SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred --CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 111 00 00000 001111111100 122 22898886 4566666 78999999 8999876 66
Q ss_pred HHHHHHHHHHhC-Cc--EEEEEcCChhHH
Q psy10858 260 RMWDLLQVFVGK-GR--TVIMTTQYIEEA 285 (457)
Q Consensus 260 ~i~~~i~~~~~~-g~--TIIisTH~~~ea 285 (457)
.+.+.++.+.+. |. .+.+++|+-+.+
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 777777666543 43 566677765433
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.99 E-value=2.1e-07 Score=86.61 Aligned_cols=59 Identities=24% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEE--------cCccCCC-CchhhhcCcEEEEcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK---NISQGEIWV--------LGGHPAS-IYHKTAGSKVGYMPQEL 174 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll---~p~sG~I~i--------~G~~~~~-~~~~~~r~~IGyvpQ~~ 174 (457)
.+.+++|+|++||||||+.++|++.+ .++.|+++. .|.++.. ......++.+|+++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35789999999999999999999866 678899876 5655432 11223456788888864
No 205
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.98 E-value=7.6e-06 Score=85.19 Aligned_cols=68 Identities=10% Similarity=0.308 Sum_probs=46.4
Q ss_pred cCCceEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEcCCh-hHHhc-cCeEEE-EeCCeEEEecChh
Q psy10858 239 HKPQLIILDEPCVGVDP-LVRKRMWDLLQVFVGKGRTVIMTTQYI-EEAND-ASEVAF-LYKGRIIAQDSPD 306 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp-~~r~~i~~~i~~~~~~g~TIIisTH~~-~ea~~-~dri~i-m~~GkI~~~gs~~ 306 (457)
.+|++|++||+..-.+. ..+..++..+....+.|+.||++||+. .++.. .+++.- +..|.++....|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999876654 678888888877777899999999983 33221 222221 3456666555553
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.98 E-value=2.8e-05 Score=78.27 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=74.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~ 190 (457)
-+++|+++.|.||+|+|||||+..++.. .++..| | ....+.|+.-+..+ .... +.-.+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g----------~~~~vlyi~~E~~~----~~~~-l~~~~ 177 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y----------PGGKIIFIDTENTF----RPDR-LRDIA 177 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B----------CCCEEEEEESSSCC----CHHH-HHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C----------CCCeEEEEECCCCC----CHHH-HHHHH
Confidence 5889999999999999999999988874 322211 0 01234455433321 1211 11112
Q ss_pred hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH-HHHHHHHHHhh----cCCceEEEeCCCCCCCHH--------H
Q psy10858 191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ-KRRLSFTIAIL----HKPQLIILDEPCVGVDPL--------V 257 (457)
Q Consensus 191 ~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq-kQRlsLA~ALl----~~P~lLILDEPTsGLDp~--------~ 257 (457)
...+++.+. +++.+.+ ....++.+ .+.+..++.++ .+++++++|+.++-.... .
T Consensus 178 ~~~g~~~~~-------~l~~l~~------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~ 244 (343)
T 1v5w_A 178 DRFNVDHDA-------VLDNVLY------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE 244 (343)
T ss_dssp HHTTCCHHH-------HHHTEEE------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHH
T ss_pred HHcCCCHHH-------HHhceeE------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHH
Confidence 223443321 2222211 11123332 24455555665 679999999999866442 1
Q ss_pred ----HHHHHHHH-HHHHhCCcEEEEEcCChh
Q psy10858 258 ----RKRMWDLL-QVFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 258 ----r~~i~~~i-~~~~~~g~TIIisTH~~~ 283 (457)
..+++..+ ...++.|.+||+++|-..
T Consensus 245 r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 245 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 12333333 333456999999999754
No 207
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.95 E-value=4.2e-06 Score=77.14 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=29.0
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+-=++++|++++|+|++||||||+.++|++.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334678899999999999999999999999874
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=2.9e-05 Score=75.22 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCcEEEEEcCChhH
Q psy10858 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----------LVRKRMWDLLQVFVG----KGRTVIMTTQYIEE 284 (457)
Q Consensus 224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp----------~~r~~i~~~i~~~~~----~g~TIIisTH~~~e 284 (457)
+++++.|..++.|...+|.+|++||+.+.++. .....++..++.... .+..||.+|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 35677777888888889999999999776553 222233433333211 34678889997654
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=2.4e-05 Score=77.71 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=82.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
...|+.+.--+++|+++.|.|++|+|||||+..++.-.-- . | ..+.|+.- +++..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g------------~~vl~~sl------E~s~~ 109 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D------------DVVNLHSL------EMGKK 109 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T------------CEEEEEES------SSCHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C------------CeEEEEEC------CCCHH
Confidence 4567887767999999999999999999998887743210 0 0 23555542 24554
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCC-CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~-~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~ 262 (457)
+... ++......+++... +.. ..||.++++|+..|...+.++++++.|+|...+ ..+.
T Consensus 110 ~l~~---------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~ 168 (315)
T 3bh0_A 110 ENIK---------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIW 168 (315)
T ss_dssp HHHH---------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHH
T ss_pred HHHH---------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHH
Confidence 4332 11111111111111 111 238999999999999999999999999987443 2344
Q ss_pred HHHHHHH-hCCcE--EEEEcCC
Q psy10858 263 DLLQVFV-GKGRT--VIMTTQY 281 (457)
Q Consensus 263 ~~i~~~~-~~g~T--IIisTH~ 281 (457)
..++.+. +.|.. +|++-|-
T Consensus 169 ~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 169 SKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHhcCCCCeEEEEeCc
Confidence 4444433 34666 8877664
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.85 E-value=5.7e-05 Score=71.12 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEcC
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGRTVIMTTQ 280 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~--~g~TIIisTH 280 (457)
.+|+++|+..+.+.++......++.+.+.... ...+||+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999989988777777666554322 1358888888
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.80 E-value=8.3e-06 Score=81.28 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=75.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM 191 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~ 191 (457)
-+++|+++.|.|++|+|||||+..++... .+.+ +.| ...++.|+.-+..+ ... .+.-.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~----~gg----------~~~~vlyi~~e~~~----~~~-~l~~~~~ 163 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE----KGG----------LSGKAVYIDTEGTF----RWE-RIENMAK 163 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG----GTC----------CSCEEEEEESSSCC----CHH-HHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc----cCC----------CCCeEEEEECCCCC----CHH-HHHHHHH
Confidence 58999999999999999999999887642 3311 000 01234454433321 111 1211122
Q ss_pred hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh-HHHHHHHHHHhh---cCCceEEEeCCCCCCCH--------HHH-
Q psy10858 192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG-QKRRLSFTIAIL---HKPQLIILDEPCVGVDP--------LVR- 258 (457)
Q Consensus 192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG-qkQRlsLA~ALl---~~P~lLILDEPTsGLDp--------~~r- 258 (457)
..+.+.++ +++.+-+ ....+.. +.+.+..+++++ .+|+++++|+.++-... ..+
T Consensus 164 ~~g~~~~~-------~~~~l~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~ 230 (324)
T 2z43_A 164 ALGLDIDN-------VMNNIYY------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQ 230 (324)
T ss_dssp HTTCCHHH-------HHHTEEE------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHH
T ss_pred HhCCCHHH-------HhccEEE------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHH
Confidence 23443322 1121111 1112333 335677777777 67999999999876532 122
Q ss_pred ---HHHHHHHH-HHHhCCcEEEEEcCChh
Q psy10858 259 ---KRMWDLLQ-VFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 259 ---~~i~~~i~-~~~~~g~TIIisTH~~~ 283 (457)
.+++..+. ..++.+++||++.|-..
T Consensus 231 ~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 231 QKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 23333333 33455999999988654
No 212
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.79 E-value=7.5e-06 Score=72.77 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G 152 (457)
.|++++|+|+|||||||+.++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998754 45554
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=1.9e-05 Score=88.30 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=29.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
|.+++|+.+.|+||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998753
No 214
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.74 E-value=1.5e-05 Score=82.63 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=40.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN------------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~------------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL 186 (457)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++.-.+..-.++..++.+|....|..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 689999999999999999999864 67899999987542111111233445555655555555555555
Q ss_pred H
Q psy10858 187 N 187 (457)
Q Consensus 187 ~ 187 (457)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.73 E-value=5.9e-05 Score=74.06 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.+.++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788889999999999999999999876
No 216
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.71 E-value=0.00013 Score=64.13 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 217
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.66 E-value=1e-05 Score=72.84 Aligned_cols=39 Identities=31% Similarity=0.209 Sum_probs=32.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCcc
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGGH 154 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~~ 154 (457)
++|++++|.|++||||||+.++|++.+++ .| .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47999999999999999999999998866 56 66666543
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.62 E-value=0.0001 Score=74.86 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.3
Q ss_pred eeEeeeeE---EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 105 VVLNNCSL---VVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 105 ~aL~~vs~---~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
..||.+ + -+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345554 3 3889999999999999999999877754
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.62 E-value=2.2e-05 Score=74.58 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=32.9
Q ss_pred eEeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q psy10858 106 VLNNCSLVVK---RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL 151 (457)
Q Consensus 106 aL~~vs~~I~---~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~ 151 (457)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4778888887 9999999999999999999999999887 6666543
No 220
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.57 E-value=3.9e-05 Score=68.14 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=25.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666655 999999999999999999874
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.52 E-value=0.00031 Score=66.68 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=24.9
Q ss_pred EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44556666666 88999999999999999998764
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.50 E-value=1.6e-05 Score=73.67 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=36.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCc
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGG 153 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~ 153 (457)
+.+++|.+++|.|++||||||+.+.|++.+.|+.| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34678999999999999999999999999988888 7888654
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.49 E-value=3.9e-06 Score=83.23 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=49.3
Q ss_pred EEEeeEEEeCCCCceeEee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 91 EGKNTEKEELKPSNVVLNN-CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 91 ei~nlsk~yg~~~~~aL~~-vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
..+++.+.|+. .. ++ ++++++ |++++++|+||+||||++..|++.+.+..|+|.+.+.++
T Consensus 76 ~~~~l~~~~~~--~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGG--DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTC--SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHhcc--cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34566677776 32 56 888876 999999999999999999999999988888898877655
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.47 E-value=6.2e-05 Score=69.34 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987654
No 225
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.47 E-value=0.00028 Score=69.41 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=31.7
Q ss_pred cCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy10858 239 HKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281 (457)
Q Consensus 239 ~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIisTH~ 281 (457)
.++.+|++||+-. .-+...+..++..+....+.|..+|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5699999999855 335577888888877766677767666653
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=4.4e-05 Score=74.06 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I 148 (457)
..+.|.||+|+||||+.++|++.+....|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766644
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=8.5e-05 Score=67.77 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999997654
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.41 E-value=1.2e-05 Score=81.72 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=38.8
Q ss_pred CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858 88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G 152 (457)
..+.+.++++.|++ +.++++++|+| +|+|++|+|||||++.|.|...+..|.+...+
T Consensus 16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 35888999999987 88899999987 89999999999999999998766666554444
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.37 E-value=0.00013 Score=66.08 Aligned_cols=35 Identities=37% Similarity=0.400 Sum_probs=20.7
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.+++++++..++. .++++|++|+|||||++.+++-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4688999998888 5689999999999999999973
No 230
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.32 E-value=3.1e-05 Score=80.01 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=47.5
Q ss_pred CceEEEeeEEEeCCCCceeEe--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 88 EADEGKNTEKEELKPSNVVLN--------------NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 88 ~~Iei~nlsk~yg~~~~~aL~--------------~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.-+.++|++..|... +.+|+ |+++.|.+|+..+|+||+|+|||||+++|++.+
T Consensus 132 ~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 357789999999763 66888 899999999999999999999999999999875
No 231
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.31 E-value=5.4e-05 Score=71.41 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=64.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY 193 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~ 193 (457)
+.+|+.+.+.||+||||||++.++........| ....++++.+.+......++.+++... .
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----------------~~~~~~~l~~~p~~~la~q~~~~~~~~---~ 133 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----------------RAAECNIVVTQPRRISAVSVAERVAFE---R 133 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----------------CGGGCEEEEEESSHHHHHHHHHHHHHT---T
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----------------CCCceEEEEeccchHHHHHHHHHHHHH---h
Confidence 357999999999999999998876432111100 012356666666443333455554321 1
Q ss_pred CCCHHHHHHHHHHHHhHcCC--CC------CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHH
Q psy10858 194 GMDESIWLFQMRKYSHVLKL--PN------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDL 264 (457)
Q Consensus 194 g~~~~~~~~~~~~ll~~l~L--~~------~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~ 264 (457)
+..- ....+. .. .+..+--.+.|.-.+.. .+.+.+-+++|+||.-. ++|.......++.
T Consensus 134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1000 000010 00 00011113456665553 34688999999999966 6777666444444
No 232
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.30 E-value=0.00021 Score=66.42 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=24.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIV 138 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~ 138 (457)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999875
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=1.7e-06 Score=85.40 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=33.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
++.+|++|| ...|++..+..+++.++... ....+|++|++....
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhC
Confidence 678999999 78899999988888877643 345567777776643
No 234
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.29 E-value=0.00019 Score=63.89 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|..++|+|++|+|||||++.|+|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999999753
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.27 E-value=0.001 Score=68.98 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=79.4
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~ 183 (457)
...|+.+.--+++|+++.|.|++|+|||||...++.......| ..+.|+.= +++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~sl------E~~~~ 242 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSL------EMPAA 242 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEES------SSCHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEEC------CCCHH
Confidence 3457777656999999999999999999999888764322111 23455432 24433
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
+.. .++... ..+++...-.-+.||..+.+|+.-|...+.+.++.+.|+|... +. ++..
T Consensus 243 ~l~---------------~R~~~~--~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~~---~l~~ 300 (444)
T 2q6t_A 243 QLT---------------LRMMCS--EARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--LM---EVRA 300 (444)
T ss_dssp HHH---------------HHHHHH--HTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--HH---HHHH
T ss_pred HHH---------------HHHHHH--HcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--HH---HHHH
Confidence 222 122111 2233211112246999999999998888888889999887443 32 2333
Q ss_pred HHHHH-HhCCcEEEEEcC
Q psy10858 264 LLQVF-VGKGRTVIMTTQ 280 (457)
Q Consensus 264 ~i~~~-~~~g~TIIisTH 280 (457)
.++.+ ++.|..+|++-+
T Consensus 301 ~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 301 RARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEcC
Confidence 33332 345677777644
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.27 E-value=0.00068 Score=64.94 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHhhcCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hCCcEEEEEcCChhHH
Q psy10858 233 FTIAILHKPQLIILDEPCV----------GVDPLVRKRMWDLLQVFV----GKGRTVIMTTQYIEEA 285 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTs----------GLDp~~r~~i~~~i~~~~----~~g~TIIisTH~~~ea 285 (457)
+..|....|.+|++||--. +-+...+..+.+++.... ..+..||.+|+..+.+
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3444456789999999733 236666777777766542 2356788899887654
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.25 E-value=7.5e-05 Score=67.47 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i 150 (457)
+...+|.+++|.|++||||||+.+.|++.+.+..|.+.+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 344689999999999999999999999998877776643
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.23 E-value=5e-05 Score=69.30 Aligned_cols=41 Identities=34% Similarity=0.297 Sum_probs=31.4
Q ss_pred EeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 98 ~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
+|++- ..+++++|+..+++. ++++|++|+|||||++.+++-
T Consensus 8 ~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 8 IYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 44442 357889999988886 679999999999999999873
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00014 Score=65.88 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999875
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.17 E-value=0.00046 Score=69.84 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=34.0
Q ss_pred ceEEEeeEEE-eCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858 89 ADEGKNTEKE-ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV 138 (457)
Q Consensus 89 ~Iei~nlsk~-yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~ 138 (457)
|..++.|+.. |+. +++..+++.+| +++|.|+|||||||++..|.
T Consensus 2 ~M~l~~L~l~nFr~-----~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 2 SMILKEIRMNNFKS-----HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CEEEEEEEEEEETT-----EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred CcEEeEEEEEcccc-----ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3456666643 444 57788888775 99999999999999999876
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00018 Score=65.71 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10858 119 FFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~G 139 (457)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.12 E-value=0.00016 Score=65.63 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=33.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
.+|.+|++||.-. +|+.....+.+.++.. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 4688999999755 7888777777666432 3467889999887654
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.00047 Score=68.13 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566789999999999999999987653
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.10 E-value=0.00023 Score=73.46 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=33.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCceEEEEcCc
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGL-----------KNISQGEIWVLGG 153 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl-----------l~p~sG~I~i~G~ 153 (457)
.+..|..+||+|+||+|||||++.|+|. +.|+.|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4467788999999999999999999998 6788898887664
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.08 E-value=0.0002 Score=65.83 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 246
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.06 E-value=0.00033 Score=62.20 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|++|+|||||++.|+|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 247
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.99 E-value=7.2e-05 Score=71.79 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=33.0
Q ss_pred HHHHhhcCCceEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858 233 FTIAILHKPQLIILDEPCVG-VDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280 (457)
Q Consensus 233 LA~ALl~~P~lLILDEPTsG-LDp~~r~~i~~~i~~~~~~g~TIIisTH 280 (457)
+..++..+|+++|+||+-.- .+.......|+.+......|..|+.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33334468999999998642 4433344456665556678999999999
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00017 Score=65.89 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
..+++|.|++||||||+.+.|++.+ |...+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999999875 445555433
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.88 E-value=0.00045 Score=61.85 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
-++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 3789999999999999999997544
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.84 E-value=0.00049 Score=61.60 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.84 E-value=0.0017 Score=66.15 Aligned_cols=27 Identities=41% Similarity=0.477 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
-+++|+++.|.|+.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999876654
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.82 E-value=0.0046 Score=60.85 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999999988775
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.79 E-value=0.00045 Score=63.21 Aligned_cols=37 Identities=27% Similarity=0.217 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCc
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGG 153 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~ 153 (457)
-.+++|+|++|||||||++.|.+.+++. -|.|..+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3589999999999999999999876543 366666543
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00013 Score=81.61 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=29.1
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++.+.+|+.+.|.||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 36678899999999999999999999999876
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.73 E-value=0.00069 Score=63.78 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
=.+|.+++|+|++||||||+.++|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999999743
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.71 E-value=0.00015 Score=73.84 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=33.9
Q ss_pred eeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 105 VVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 467788888999999 99999999999999999998753
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.00057 Score=65.29 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=32.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH 154 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~ 154 (457)
..+++.++.|+|++||||||+.+.|+..+. .|.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 456788999999999999999999998764 3567776643
No 258
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.63 E-value=0.00063 Score=68.97 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=40.0
Q ss_pred cCCceEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 239 HKPQLIILDEPCVGV---DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 239 ~~P~lLILDEPTsGL---Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
..|.++++||-=.=+ +|...+.+.++++..++.|..++++||+++.+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 358999999997777 47788888888888899999999999999765
No 259
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.63 E-value=0.0095 Score=59.76 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
...-+.|.||.|+|||||.+.|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45668899999999999999998764
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.51 E-value=0.0013 Score=57.62 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.51 E-value=0.0031 Score=75.56 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE 147 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~ 147 (457)
-+++|+++.|.||+|+|||||+..++.......|.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~ 762 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 762 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC
Confidence 38999999999999999999999998765433333
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.51 E-value=0.015 Score=54.40 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
....-+.|.||.|+||||+.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334457899999999999999998754
No 263
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.49 E-value=0.0098 Score=51.64 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
.+.-+.|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3445789999999999999999876543
No 264
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.44 E-value=0.0048 Score=62.15 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 112 LVVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
-.+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999998875
No 265
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.00059 Score=62.32 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEI 148 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I 148 (457)
+++|.|++||||||+++.|...+......+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876543344
No 266
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.37 E-value=0.0017 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
++-+++|.|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 267
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0031 Score=60.01 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=35.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh----------hHH-hccCeEEEEe
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI----------EEA-NDASEVAFLY 295 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~----------~ea-~~~dri~im~ 295 (457)
.+|+++++||--. |++. +.+.+..+.+.|++||++-|+. ..+ ..||+|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999954 6643 3334444455699999999932 222 4588888875
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.36 E-value=0.002 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.35 E-value=0.0019 Score=57.46 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998643
No 270
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.33 E-value=0.0007 Score=64.93 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.33 E-value=0.0018 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997543
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.31 E-value=0.0019 Score=56.11 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q psy10858 119 FFVLLGASSAGKTTLLKAI 137 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L 137 (457)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 273
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.25 E-value=0.025 Score=59.23 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.2
Q ss_pred eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
.|+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3555443589999999999999999999776654
No 274
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.23 E-value=0.028 Score=58.80 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i 150 (457)
++.++.++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 57899999999999999999999876543334433
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.22 E-value=0.012 Score=59.18 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.5
Q ss_pred EeCCcEEEEEcCCCccHHHHH-HHHHcCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLL-KAIVGLK 141 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLL-k~L~Gll 141 (457)
+++| ++-|.||.|+|||||. .+++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789 8999999999999994 4444433
No 276
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.20 E-value=0.0032 Score=64.24 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCceEEEEcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVG-----------LKNISQGEIWVLG 152 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~G-----------ll~p~sG~I~i~G 152 (457)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999 3467788887765
No 277
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.20 E-value=0.0021 Score=61.78 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEE
Q psy10858 249 PCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVA 292 (457)
Q Consensus 249 PTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~ 292 (457)
|||+.+......+++.+... .+.+.++.+.+|+.++++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 89999999999999885444 4445566778888888765 56543
No 278
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.16 E-value=0.011 Score=61.66 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=75.4
Q ss_pred eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184 (457)
Q Consensus 105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E 184 (457)
..|+.+.--+++|+++.|.|+.|+|||||.--++.-.--. ...+.|+.=+ ++..+
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------------------g~~vl~fSlE------ms~~q 239 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------------------DDVVNLHSLE------MGKKE 239 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------------------TCEEEEECSS------SCTTH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------------------CCEEEEEECC------CCHHH
Confidence 3455555468999999999999999999987776521100 1245555432 33333
Q ss_pred HHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858 185 TLN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263 (457)
Q Consensus 185 nL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~ 263 (457)
... +.+...+++..... . .+ ..|+..+.+|+.-|...+.+.+++|.|+|. +++.. +..
T Consensus 240 l~~R~~~~~~~i~~~~l~-------~-------g~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~ 298 (444)
T 3bgw_A 240 NIKRLIVTAGSINAQKIK-------A-------AR--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWS 298 (444)
T ss_dssp HHHHHHHHHSCCCHHHHH-------H-------TG--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHH
T ss_pred HHHHHHHHHcCCCHHHHh-------c-------cc--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHH
Confidence 221 11112233321110 0 00 127888899999888888888999999874 55443 333
Q ss_pred HHHHH-HhCCcE--EEEEcC
Q psy10858 264 LLQVF-VGKGRT--VIMTTQ 280 (457)
Q Consensus 264 ~i~~~-~~~g~T--IIisTH 280 (457)
.++.+ ++.|.. +|++-+
T Consensus 299 ~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 299 KTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEEec
Confidence 33332 334666 777654
No 279
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0024 Score=57.62 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G 152 (457)
..+++|.|++||||||+.+.|+.. |-.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6556644
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.15 E-value=0.0026 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 281
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.13 E-value=0.0027 Score=57.10 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999855
No 282
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.08 E-value=0.0045 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC-----CCCCce
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL-----KNISQG 146 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl-----l~p~sG 146 (457)
++|+|++|+|||||++.+++- ..|+.|
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 789999999999999765543 345655
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.06 E-value=0.0032 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999854
No 284
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.98 E-value=0.0038 Score=56.47 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
+|.+++|.|+.||||||+.+.|+-.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999876543
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.97 E-value=0.0038 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+.++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997544
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.96 E-value=0.0038 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999854
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.96 E-value=0.0033 Score=56.08 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++.++.|.|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999843
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.95 E-value=0.0038 Score=54.98 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~G 139 (457)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.94 E-value=0.0034 Score=58.05 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.92 E-value=0.0034 Score=60.15 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.92 E-value=0.0042 Score=55.66 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0043 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++.+++|.|+.||||||+.+.|+-.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.89 E-value=0.0034 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.82 E-value=0.011 Score=51.15 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=28.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280 (457)
Q Consensus 240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH 280 (457)
+..+|++||. ..+++..+..+.+.++.....+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3578999996 467888888888887664334455666554
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.80 E-value=0.0039 Score=61.04 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G 152 (457)
.+|.++.|.||+||||||+.+.|...++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4578899999999999999999987553 35566654
No 296
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.79 E-value=0.046 Score=56.17 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.-.+..++.|+|++||||||+.+.|+..+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999987643
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.77 E-value=0.0036 Score=55.55 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=18.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999999999998544
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.72 E-value=0.022 Score=69.30 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|+++.|.||+|+|||||...++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988776543
No 299
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.70 E-value=0.054 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+.-+.|.||.|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999888765
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.70 E-value=0.0054 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++.|.|+.||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987543
No 301
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.08 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.67 E-value=0.0055 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 303
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.005 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++++|+.|+|||||++.++|...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999998653
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.60 E-value=0.0055 Score=55.38 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|++||||||+.++|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.59 E-value=0.0051 Score=55.22 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++.+++|.|+.||||||+.+.|+-.+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998644
No 306
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.55 E-value=0.0055 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|+|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 78999999999999999988643
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.54 E-value=0.0062 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
.+++|.|++|||||||+..|...++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 308
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.53 E-value=0.0067 Score=52.60 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.++|-.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 7899999999999999999864
No 309
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.51 E-value=0.0067 Score=58.99 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
No 310
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.51 E-value=0.0056 Score=54.51 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.49 E-value=0.0078 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|-+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998644
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0071 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+++-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999984
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.48 E-value=0.0062 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.47 E-value=0.0075 Score=56.05 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.47 E-value=0.0064 Score=52.23 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
No 316
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.46 E-value=0.014 Score=58.41 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=31.8
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
...+++..+.+ .|.-+.|.|+||+|||||...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 56889988888 788999999999999999999987
No 317
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.42 E-value=0.0076 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++++|+.|+|||||++.++|...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 68999999999999999987643
No 318
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.39 E-value=0.0071 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999988643
No 319
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.38 E-value=0.0071 Score=51.68 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 320
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.38 E-value=0.0072 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999764
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.38 E-value=0.007 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.++|-.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 322
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.34 E-value=0.0076 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998865
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.31 E-value=0.0076 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.|+|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 324
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.31 E-value=0.0077 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.+.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 47899999999999999999864
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.30 E-value=0.0089 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 326
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.30 E-value=0.0079 Score=51.85 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998763
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.28 E-value=0.011 Score=51.52 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.-.++|+|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44568999999999999999998854
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.28 E-value=0.0078 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 329
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.28 E-value=0.0079 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999876
No 330
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.28 E-value=0.008 Score=51.53 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
No 331
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.27 E-value=0.0081 Score=52.28 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
No 332
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.27 E-value=0.0081 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.26 E-value=0.0092 Score=54.65 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 334
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.25 E-value=0.0055 Score=53.80 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~G 139 (457)
=-++++|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999875
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.25 E-value=0.01 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
..+-+++|.|+.||||||+.+.|+-.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999997643
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.24 E-value=0.0084 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.23 E-value=0.01 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
+.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.23 E-value=0.0085 Score=52.13 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 339
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.19 E-value=0.033 Score=66.77 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=28.0
Q ss_pred eeEeeeeE--EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 105 VVLNNCSL--VVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 105 ~aL~~vs~--~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
..||.+-= -+++|+++-|.||+|+|||||.-.++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34555521 3899999999999999999998776643
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.18 E-value=0.01 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+..+++|.|+.||||||+.+.|+-.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999998543
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.16 E-value=0.0087 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++.++.|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998544
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.15 E-value=0.011 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++.++.|.|++||||||+.+.|+-.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999865
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.14 E-value=0.011 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
=++++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.13 E-value=0.0091 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.12 E-value=0.0095 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.|++-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.11 E-value=0.0097 Score=51.05 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+++-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 347
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.09 E-value=0.0098 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.++|-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999864
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.09 E-value=0.011 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.07 E-value=0.012 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998643
No 350
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.06 E-value=0.0099 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|+|+.|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998754
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.06 E-value=0.011 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+++-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 352
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.05 E-value=0.01 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
.++|+|.+|+|||||++.|+|....
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 3789999999999999999997543
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.05 E-value=0.01 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998743
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.03 E-value=0.01 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998853
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.03 E-value=0.01 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.00 E-value=0.028 Score=68.34 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=49.8
Q ss_pred hhhhhhcCCCCCCCeEEEEeccCCcccccCCCCC-CCCCCCCCcccCCcCchhhhHHHHhhccC----cccccCC--CCH
Q psy10858 363 AIFNATMGSPPAGLKMGVVNYELRGEFERSGNNS-PYCPVNHDCLIKSPKARKSCTLLSCLDKD----TIKLKYF--PDE 435 (457)
Q Consensus 363 ~~~~~~i~~d~~~l~~av~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~--~~~ 435 (457)
+=..+|||+=|.+==+-|.-.|.++-.--...-. ..+..-..|-|-.+...+--.|...|-=. .+-||.. .-.
T Consensus 1763 ~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 1842 (2050)
T 3cmu_A 1763 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 1842 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHH
T ss_pred HHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHHhhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHH
Confidence 5577899999999888888877655110000000 00022333666555556667788876322 4555543 223
Q ss_pred HHHHHHhhcCceEEEE
Q psy10858 436 ESAEEALKNESLSLLL 451 (457)
Q Consensus 436 ~~~~~~~~~g~~~~~~ 451 (457)
+=++.-+|+|.+-+++
T Consensus 1843 ~~~~~~~~~~~~~~~~ 1858 (2050)
T 3cmu_A 1843 EICDALARSGAVDVIV 1858 (2050)
T ss_dssp HHHHHHHHHTCCSEEE
T ss_pred HHHHHHHhcCCCcEEE
Confidence 3355667888765543
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.97 E-value=0.011 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.95 E-value=0.011 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+++-
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 359
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.91 E-value=0.012 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 360
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.91 E-value=0.012 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7899999999999999998753
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.91 E-value=0.011 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.012 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+.+-.
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 363
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.88 E-value=0.012 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 364
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.85 E-value=0.012 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++++|+.|+|||||++.|++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.80 E-value=0.013 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
No 366
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.79 E-value=0.0096 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.77 E-value=0.014 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+++-.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.76 E-value=0.016 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++-+++|.|+.||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999743
No 369
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=52.28 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998653
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.013 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.|++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 371
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.014 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++|+|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999874
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.73 E-value=0.014 Score=52.36 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 373
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.72 E-value=0.013 Score=59.80 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
+||+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 374
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.71 E-value=0.011 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999865
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.71 E-value=0.016 Score=53.97 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 376
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.71 E-value=0.015 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.70 E-value=0.014 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|+.|+|||||++.+++-.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 378
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.70 E-value=0.016 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|.+|+|||||++.|+|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 379
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.69 E-value=0.15 Score=49.51 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=32.1
Q ss_pred CCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 240 KPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 240 ~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
+++++++||.- .|. ...+..+.+.++.. ..+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAY-SSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCcccc
Confidence 78999999984 444 66777777777664 3467888888887654
No 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.68 E-value=0.015 Score=51.31 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.=-++++|+.|+|||||++.+++-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357899999999999999999754
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.66 E-value=0.015 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+++-
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 382
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.66 E-value=0.016 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++||.|+.||||||+.+.|+-.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.63 E-value=0.015 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 384
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.63 E-value=0.017 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.-++||.|+.||||||+.++|.-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 385
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.61 E-value=0.016 Score=55.58 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|..|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999864
No 386
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.59 E-value=0.014 Score=56.05 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|+|.+|+|||||++.|.|.-.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 78999999999999999987643
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.58 E-value=0.017 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.016 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 389
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.58 E-value=0.02 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999999754
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.55 E-value=0.018 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 391
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.54 E-value=0.021 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999865
No 392
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.53 E-value=0.017 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 393
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.52 E-value=0.015 Score=55.32 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 114 VKRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
..+|-++.|.|+.||||||+.+.|.-.+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999987654
No 394
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.51 E-value=0.016 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999999864
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.51 E-value=0.02 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+|-++.|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999997644
No 396
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.51 E-value=0.036 Score=62.05 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNISQ 145 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p~s 145 (457)
..+.|.||+|+|||++.+.|+.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~ 616 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE 616 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4788999999999999999998875433
No 397
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.50 E-value=0.017 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10858 119 FFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~G 139 (457)
-++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999984
No 398
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.49 E-value=0.014 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.++|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 399
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.49 E-value=0.019 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.767 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+++|+|..|+|||||++.|+|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999863
No 400
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.019 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999964
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.017 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 402
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.018 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.696 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC--
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998753
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.47 E-value=0.019 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.47 E-value=0.021 Score=53.53 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNI 143 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p 143 (457)
.+|-++.|.|+.||||||+.+.|.-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876643
No 405
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.47 E-value=0.16 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++.-+.|.||.|+|||||.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999998763
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.46 E-value=0.017 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 407
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.46 E-value=0.022 Score=55.08 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I 148 (457)
-.++++|.+|+|||||++.|.|......|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 4789999999999999999999876554443
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.46 E-value=0.017 Score=52.08 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|.+|+|||||++.++|.
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999974
No 409
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.45 E-value=0.015 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+++-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999874
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.43 E-value=0.018 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 411
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.42 E-value=0.0093 Score=62.85 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=35.0
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW 149 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~ 149 (457)
..+++.+ +.+-+|+..+|+|++|+|||||++.|++......|.+.
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 3466666 77889999999999999999999999876543334443
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.41 E-value=0.018 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 413
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.41 E-value=0.017 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.40 E-value=0.018 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 415
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.39 E-value=0.018 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 416
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.38 E-value=0.024 Score=49.31 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+..+.|.||.|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998764
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.36 E-value=0.018 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 418
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.35 E-value=0.022 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
-++|+|..|+|||||++.+.|-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998644
No 419
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.019 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 420
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.33 E-value=0.018 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999853
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.019 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+++-
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.32 E-value=0.022 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.02 Score=51.29 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++|+|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.29 E-value=0.02 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998743
No 425
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.26 E-value=0.023 Score=51.63 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++|+|+.|+|||||++.+++-..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998643
No 426
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.25 E-value=0.02 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.++|-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.23 E-value=0.012 Score=57.67 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++-++||-|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.21 E-value=0.023 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 429
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.21 E-value=0.021 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.19 E-value=0.021 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+++-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 431
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.19 E-value=0.098 Score=50.17 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=39.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC----------hhH-HhccCeEEEEe
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY----------IEE-ANDASEVAFLY 295 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~----------~~e-a~~~dri~im~ 295 (457)
.+.+++++||----.| ++++++.+.+.|+.||++-++ +.+ +..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 677776666789999999999 222 35589888775
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.18 E-value=0.027 Score=52.88 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+|.++.|-|+.||||||+++.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 433
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.18 E-value=0.024 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++|+|..|||||||++.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 434
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.17 E-value=0.026 Score=53.92 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+|.++.|.|++||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987664
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.15 E-value=0.024 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+++-
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999874
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.11 E-value=0.028 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++..+.|.|+.||||||+.+.|+-.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998654
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.022 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.10 E-value=0.025 Score=54.47 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~G 139 (457)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.05 E-value=0.023 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999864
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.00 E-value=0.025 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+++-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 789999999999999988764
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.03 Score=52.44 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+|.+++|-|+.||||||+.+.|+-.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999997664
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.98 E-value=0.032 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.98 E-value=0.026 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.95 E-value=0.017 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=8.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+++-
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998864
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.93 E-value=0.031 Score=52.66 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW 149 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~ 149 (457)
.+|.++.+.|+.||||||+.+.|.-.+.. .+.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~ 36 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLL 36 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEE
Confidence 47999999999999999999999988765 45443
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.93 E-value=0.047 Score=51.40 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.5
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
...++..-+.+ .|..+.|+||+|+|||||...|+...
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 44566666554 68889999999999999999998653
No 447
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.026 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++++|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.87 E-value=0.026 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.87 E-value=0.028 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|..|+|||||++.|+|-.
T Consensus 39 I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999854
No 450
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.85 E-value=0.026 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999754
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.84 E-value=0.026 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 452
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.72 E-value=0.033 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999987654
No 453
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.64 E-value=0.032 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++++|..|+|||||++.|+|-.
T Consensus 42 I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 454
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.57 E-value=0.034 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|..|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888653
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.56 E-value=0.039 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.+|-++.|-|+.||||||+.+.|.-.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999987664
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.037 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|.+|+|||||++.++|..
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999999753
No 457
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.47 E-value=0.015 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=4.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998875
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.45 E-value=0.016 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.++|-.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988654
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.44 E-value=0.035 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 7899999999999999998754
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.40 E-value=0.026 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 115 KRREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
+++-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987763
No 461
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.37 E-value=0.025 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10858 119 FFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~G 139 (457)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999965
No 462
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.037 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.29 E-value=0.044 Score=51.69 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.+++..++.|+||.||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999999843
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.29 E-value=0.037 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+++-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999988853
No 465
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.26 E-value=0.19 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+.|.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 466
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.25 E-value=0.042 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.25 E-value=0.038 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+.+-.
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
No 468
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.23 E-value=0.035 Score=57.55 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858 226 GQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA 285 (457)
Q Consensus 226 GqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea 285 (457)
.+++....+...+.+++++|+..... ++.+.. ..+++.+ ++.++.+|++-+-++..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEECccch
Confidence 46666677777777888877765543 455443 3444443 34677777777766543
No 469
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.16 E-value=0.011 Score=61.56 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred EEEeCC--cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858 112 LVVKRR--EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155 (457)
Q Consensus 112 ~~I~~G--ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~ 155 (457)
|.+.++ .+++++|++|+|||||...|++.+.....+|.+-..++
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 334434 58999999999999999999998765444565544443
No 470
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.13 E-value=0.062 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858 113 VVKRREFFVLLGASSAGKTTLLKAIV 138 (457)
Q Consensus 113 ~I~~Gei~gLlGpNGaGKTTLLk~L~ 138 (457)
-+++|+++.|.|+.|+|||||.--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999999976543
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.12 E-value=0.041 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gl 140 (457)
++|+|+.|+|||||++.+++-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.11 E-value=0.14 Score=54.04 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCCCCCCChhHHHHHHHHHHh--hc---------------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy10858 217 ERPVKYLSGGQKRRLSFTIAI--LH---------------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279 (457)
Q Consensus 217 ~~~~~~LSGGqkQRlsLA~AL--l~---------------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisT 279 (457)
++..+.+||||+|-.-+|++- ++ .=.+++|||. +-+|....+..+++++. -|.=+|++|
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~---lglQliiat 449 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER---LDMQLLIAA 449 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH---cCCEEEEEC
Confidence 455788999999965544433 22 1257999999 99999999998888764 478888888
Q ss_pred CChhHHhccCeEEEEe
Q psy10858 280 QYIEEANDASEVAFLY 295 (457)
Q Consensus 280 H~~~ea~~~dri~im~ 295 (457)
=+ ......|.++.+.
T Consensus 450 P~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE-NISPERGTTYKLV 464 (483)
T ss_dssp SS-SCCCSSSEEEECC
T ss_pred cc-hhhhccCceEEEE
Confidence 87 2234467766553
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.91 E-value=0.056 Score=54.19 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.+++|.||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998765
No 474
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.78 E-value=0.064 Score=48.82 Aligned_cols=40 Identities=13% Similarity=0.338 Sum_probs=27.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ 283 (457)
.+++++++||-=- +++. +++.+..+.+.|..||++.++.+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccc
Confidence 3578999999643 5443 44455544566999999988655
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.75 E-value=0.067 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
++.++.|+||.|||||||-..|+-.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567999999999999999999998763
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.71 E-value=0.057 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++.|+||+|||||||-+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.60 E-value=0.017 Score=54.71 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=24.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++.+..++| +.|.||+|+|||||.+.|+..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3344455666 779999999999999999974
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.46 E-value=0.067 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999998543
No 479
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.42 E-value=0.073 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
|.+++|=|+-||||||+.+.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998764
No 480
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.37 E-value=0.044 Score=54.92 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987654
No 481
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.31 E-value=0.088 Score=51.33 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCce
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLKNISQG 146 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG 146 (457)
+-.++++|.+|+|||||++.|.|......|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999997644333
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.30 E-value=0.069 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=31.7
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q psy10858 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE 284 (457)
Q Consensus 239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e 284 (457)
.++.+|++||. ..+++.....+.++++.. ..+..+|++|+..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhh
Confidence 46899999995 557777777777776653 345677888877654
No 483
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.24 E-value=0.065 Score=54.93 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE---eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858 204 MRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL---DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280 (457)
Q Consensus 204 ~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL---DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH 280 (457)
+.++++.++... ...++|.++..++.-...+...|-++++ |.+ ....+.++.+...+.|..+|.+|=
T Consensus 182 ~~~~l~~l~~~~---~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-------~~~~l~~l~~~~~~~~~~vv~iSA 251 (397)
T 1wxq_A 182 VWEAMHKLNLPE---DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-------SDEQIKRLVREEEKRGYIVIPTSA 251 (397)
T ss_dssp HHHHHHHTTCCS---CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-------CHHHHHHHHHHHHHTTCEEEEECH
T ss_pred HHHHHHHhccCC---ccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-------chHHHHHHHHHHhhcCCcEEEEec
Confidence 444555555422 2457899998888777777778999987 443 122333333333334655665554
Q ss_pred Ch
Q psy10858 281 YI 282 (457)
Q Consensus 281 ~~ 282 (457)
..
T Consensus 252 ~~ 253 (397)
T 1wxq_A 252 AA 253 (397)
T ss_dssp HH
T ss_pred cc
Confidence 33
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.13 E-value=0.047 Score=49.80 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHH-HHcC
Q psy10858 120 FVLLGASSAGKTTLLKA-IVGL 140 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~-L~Gl 140 (457)
++|+|+.|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
No 485
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.32 E-value=0.027 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
-++++|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4789999999999999888653
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.64 E-value=0.098 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
..++.|.||+|||||||...|+-..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998664
No 487
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.61 E-value=0.084 Score=52.89 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCChhHHHHHHHHHHh---hc--CCceEEEeCCC
Q psy10858 221 KYLSGGQKRRLSFTIAI---LH--KPQLIILDEPC 250 (457)
Q Consensus 221 ~~LSGGqkQRlsLA~AL---l~--~P~lLILDEPT 250 (457)
..+|+|++||..++++| .. ++.++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 66 89999999997
No 488
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.53 E-value=0.11 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988763
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.44 E-value=0.079 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gl 140 (457)
.++|+|..|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 490
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.34 E-value=0.055 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=26.7
Q ss_pred eeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858 110 CSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNIS 144 (457)
Q Consensus 110 vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~ 144 (457)
+.-.|..|.+ +.|.||.|+|||||.++|+......
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3333444554 7899999999999999999887543
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.20 E-value=0.019 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10858 120 FVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 120 ~gLlGpNGaGKTTLLk~L~Gll 141 (457)
++|+|+.|+|||||++.+++-.
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988653
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.04 E-value=0.11 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
--.||+|+.||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35799999999999999998643
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.02 E-value=0.11 Score=51.06 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G 152 (457)
+|..+.|.||.|+||||+.+.++..+......+.+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 4668999999999999999999987754333344433
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.87 E-value=0.26 Score=45.47 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.9
Q ss_pred ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139 (457)
Q Consensus 104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G 139 (457)
+..++..-+. -.|.-+.|.|++|+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555544 4588899999999999999987765
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.75 E-value=0.13 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 116 RREFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 116 ~Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998754
No 496
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.75 E-value=0.074 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999964
No 497
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=90.69 E-value=0.12 Score=52.63 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858 119 FFVLLGASSAGKTTLLKAIVGLKN 142 (457)
Q Consensus 119 i~gLlGpNGaGKTTLLk~L~Gll~ 142 (457)
.++++|..|+|||||++.|+|...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 478999999999999999999643
No 498
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.64 E-value=0.14 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 118 EFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 118 ei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
.+++|.||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 499
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.56 E-value=0.11 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGL 140 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gl 140 (457)
|=-++|+|+.|+|||||++.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 334899999999999999999985
No 500
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.51 E-value=0.13 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858 117 REFFVLLGASSAGKTTLLKAIVGLK 141 (457)
Q Consensus 117 Gei~gLlGpNGaGKTTLLk~L~Gll 141 (457)
+.-+.|.||.|+||||+.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999866
Done!