RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10858
(457 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 202 bits (516), Expect = 9e-62
Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 4/249 (1%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
L+ S V+ E F LLG + AGKTTLLK + GL + GEI VLG +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG-YDVVKEP 73
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERP 219
++GY+PQE +++ ELT++E L FF +YG+ + ++ + + L + +
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK 133
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMT 278
V+ LSGG K+RLS +A+LH P+L+ILDEP G+DP R+ +W+LL+ +G T++++
Sbjct: 134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS 193
Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
T +EEA + V L G+IIA+ +P+ K K+ + ++ + G
Sbjct: 194 THILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLV 253
Query: 338 TSKAEEPEV 346
+ E E+
Sbjct: 254 KGEEELAEI 262
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 170 bits (434), Expect = 1e-50
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%)
Query: 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
+N K K + +++ SL V + E F LLG + AGKTT LK + G + G ++
Sbjct: 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI-N 62
Query: 153 GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
G+ K A +GY PQ A+F ELT++E L F+ + G+ +S ++ VL
Sbjct: 63 GYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122
Query: 213 L-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
L + + LSGG KR+LS IA++ P +++LDEP G+DP R+ +WDL+ V K
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL-EVRK 181
Query: 272 GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309
GR++I+TT ++EA +A + G++ SP K
Sbjct: 182 GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 161 bits (409), Expect = 2e-47
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 37/198 (18%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
L++ SL V++ E + LLG + AGKTTL+K I+GL GEI VLG +
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEE 70
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
++GY+P+E +++ LT++E L
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENL-----------------------------------K 95
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGG K+RL+ A+LH P+L+ILDEP G+DP R+ W+LL+ +G+T+++++ +
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 283 EEAND-ASEVAFLYKGRI 299
EEA VA L GRI
Sbjct: 156 EEAERLCDRVAILNNGRI 173
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 142 bits (359), Expect = 8e-40
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 10/213 (4%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ S V+R E F LLG + AGKTT +K + L + G V GH +
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV-AGHDVVREPRE 70
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ER 218
++G + Q+L++ ELT E L +YG+ + + +L L +R
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAER---RERIDELLDFVGLLEAADR 127
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIM 277
VK SGG +RRL +++H+P+++ LDEP +G+DP R +W+ ++ + G T+++
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187
Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309
TT Y+EEA VA + GRIIA+ +P+ K
Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 132 bits (335), Expect = 3e-36
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L+ SL + + LLG + AGKTTL++ + L S G I + G +
Sbjct: 11 GKKRALDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG-QDVLKQPQ 68
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNLE--- 217
++GY+PQE ++ T++E L++ + G+ +++ VL+L NL
Sbjct: 69 KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK----EVKARVDEVLELVNLGDRA 124
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
+ + LSGG +RR+ A++ P ++I+DEP G+DP R R +LL +G+ R VI
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-LGEDRIVI 183
Query: 277 MTTQYIEE-ANDASEVAFLYKGRIIAQ 302
++T +E+ + ++VA L KG+++ +
Sbjct: 184 LSTHIVEDVESLCNQVAVLNKGKLVFE 210
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 132 bits (334), Expect = 3e-35
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSK 166
+ V+ E F LG + AGKTT ++ + L + G V G P +
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRS----- 67
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKY 222
+G +PQ ++ +LT +E L G +YG+ + + +L+L L +RPV
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE---AEERAEELLELFELGEAADRPVGT 124
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
SGG +RRL +++H+P ++ LDEP G+DP R+ +WD ++ +G T+++TT Y+
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 283 EEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311
EEA+ +A + GRIIA+ +P+ K +
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 125 bits (317), Expect = 2e-34
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 51/198 (25%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L+N SL +K E L+G + +GK+TLL+AI GL + GEI + G A + +
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE 69
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
++GY+PQ
Sbjct: 70 ELRRRIGYVPQ------------------------------------------------- 80
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LSGGQ++R++ A+L P L++LDEP G+DP R+R+ +LL+ +GRTVI+ T
Sbjct: 81 -LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 282 IEEANDAS-EVAFLYKGR 298
E A A+ V L G+
Sbjct: 140 PELAELAADRVIVLKDGK 157
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 124 bits (314), Expect = 2e-33
Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
L++ S V++ E F LLG + AGKTT ++ I+G+ GE+ G P I +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-KPLDIAARN 70
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
++GY+P+E ++ ++ + + L + + G+ + ++ ++ L+L + V+
Sbjct: 71 ---RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LS G ++++ F A++H P+L+ILDEP G+DP+ + + D+++ G+TVI++T
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 282 IEEAND-ASEVAFLYKGRIIAQ 302
+E + V L KGR +
Sbjct: 188 MELVEELCDRVLLLNKGRAVLY 209
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 123 bits (311), Expect = 7e-33
Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L++ SL +K+ EF +++G + +GK+TLL+ + GL + GE+ V G + K
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 166 KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNL----ER 218
KVG + Q + F T++E + F G+ E ++ + L+L L +R
Sbjct: 76 KVGLVFQNPD-DQFFGPTVEEEVAFGLENLGLPEE----EIEERVEEALELVGLEGLRDR 130
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
LSGGQK+R++ + P +++LDEP G+DP R+ + +LL+ +G+T+I+
Sbjct: 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIV 190
Query: 279 TQYIEEAND-ASEVAFLYKGR 298
T ++ + A V L G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 121 bits (307), Expect = 7e-32
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 15/215 (6%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+L++ S + + E +LG + +GK+TLLK + GL GE+ + G AS+ K
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 162 TAGSKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKL 213
K+ Y+PQ + LT+ E L FG DE I + + +L L
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI----VEEALELLGL 128
Query: 214 PNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-K 271
+L +RPV LSGG+++R+ A+ + +++LDEP +D + + +LL+ K
Sbjct: 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 272 GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSP 305
G TV+M + A A + L G+I+AQ +P
Sbjct: 189 GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 122 bits (308), Expect = 1e-31
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 17/213 (7%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
VV+N+ S + R E F LLG + AGK+T+ + ++G+ + +G+I VLG P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-EPVPSRARLAR 76
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLER-- 218
+G +PQ + E T++E L FG +GM R+ V L+ LE
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-------STREIEAVIPSLLEFARLESKA 129
Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
V LSGG KRRL+ A+++ PQL+ILDEP G+DP R +W+ L+ + +G+T++
Sbjct: 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308
+TT ++EEA + L GR IA+ P
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 121 bits (305), Expect = 7e-31
Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 17/211 (8%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+N S V E F LLG + AGK+T+ + I+G+ + G+I VLG P + A
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPARARLAR 113
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLER-- 218
+++G +PQ + E T++E L FG +GM R+ V L+ LE
Sbjct: 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-------STREIEAVIPSLLEFARLESKA 166
Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
V LSGG KRRL+ A+++ PQL+ILDEP G+DP R +W+ L+ + +G+T++
Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 226
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+TT ++EEA + L GR IA+ P
Sbjct: 227 LTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 117 bits (296), Expect = 2e-30
Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
+ + S + E LLG + AGKTTLL+ I L G++ + G K
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-DGVDTVRDPSFVRRK 76
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSHVLKLPNLE 217
+G + E ++ LT +E L +F + G+ E Q+ +Y
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------- 128
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
R V S G K++++ A++H P +++LDEP G+D R++ D ++ +GR VI
Sbjct: 129 RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188
Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF-YKITNDDGTS 331
++ ++E V L+KG ++ + S + ++ + L ++F + + ++GT
Sbjct: 189 SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEEGTF 244
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 116 bits (292), Expect = 4e-30
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASI 158
S L++ SL V+ EF LLG S GKTTLL+ I GL+ GEI + G G P
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP-- 69
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
+ +G + Q+ A+F LT+ E + F + G+ ++ ++R+ ++ L L
Sbjct: 70 -ERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN 125
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVI 276
R LSGGQ++R++ A+ +P L++LDEP +D +R+ + + L+ + G T I
Sbjct: 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTI 185
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQD 303
T EEA A +A + +GRI+
Sbjct: 186 YVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 118 bits (297), Expect = 5e-30
Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 11/207 (5%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
+V++ S V+R E F LLG + AGKTT L+ ++GL + G I L G P + A
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRARHAR 79
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLPNLER----P 219
+VG +PQ + + T++E L FG +G+ + R +L+ LE
Sbjct: 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAK 135
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
V LSGG KRRL+ A+++ P +++LDEP G+DP R MW+ L+ + +G+T+++TT
Sbjct: 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTT 195
Query: 280 QYIEEAND-ASEVAFLYKGRIIAQDSP 305
++EEA + + +GR IA+ +P
Sbjct: 196 HFMEEAERLCDRLCVIEEGRKIAEGAP 222
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 112 bits (282), Expect = 7e-29
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ VL + S VK EF ++G + AGK+TLLKAI+GL + G I V G +
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR- 69
Query: 163 AGSKVGYMPQELAM---FGELTIKETLNFFGMIYGMDESIWLF------QMRKYSHVLKL 213
+GY+PQ ++ F +++++ M G+ LF K L+
Sbjct: 70 ----IGYVPQRRSIDRDF-PISVRD---VVLM--GLYGHKGLFRRLSKADKAKVDEALER 119
Query: 214 PNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
L +R + LSGGQ++R+ A++ P L++LDEP GVDP ++ +++LL+
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
+G T+++ T + + + L ++A
Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 112 bits (283), Expect = 9e-29
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
+L SL V E LLG + AGKTTLLK I+GL G I G + H+ A
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHERA 73
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESI-----WLFQMRKYSHVLKLPNLE- 217
+ +GY+P+ +F ELT++E L G ++++ P L+
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENL-LLGAYARRRAKRKARLERVYEL--------FPRLKE 124
Query: 218 ---RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
+ LSGG+++ L+ A++ +P+L++LDEP G+ P + + +++ ++ +G T
Sbjct: 125 RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184
Query: 275 VIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+++ Q A + A L +GR++ + +
Sbjct: 185 ILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 112 bits (283), Expect = 2e-28
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ VL + SL V++ E L+G + AGK+TLLKAI+GL S GEI + G + +
Sbjct: 16 NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP---VRKRR 72
Query: 163 AGSKVGYMPQELAM---FGELTIKETL--------NFFGMIYGMDESIWLFQMRKYSHVL 211
++GY+PQ+ ++ F +T+K+ + +F + D+ K L
Sbjct: 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDK-------EKVDEAL 124
Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+ +E R + LSGGQK+R+ A+ P L++LDEP GVD +K ++DLL+
Sbjct: 125 ERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
+G+TV+M T + V L +IA P+ + L F
Sbjct: 185 LRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPE---EVLTEENLEKAF 235
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 111 bits (279), Expect = 3e-28
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 22/226 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+NN SL V + + LLG + AGK+TLLK I G+ + GEI + GHP + +
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWT---RKDLH 70
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RPVK 221
K+G + + ++ LT +E L + G+ +S + VL + +L + K
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDS-------RIDEVLNIVDLTNTGKKKAK 123
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
S G K+RL IA+L+ P+L+ILDEP G+DP+ + + +L++ F +G TVI+++
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183
Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
+ E A + + +G + Q + ++ L +F ++
Sbjct: 184 LSEVQQLADHIGIISEGVLGYQGKINKSEN------LEKLFVEVVK 223
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 110 bits (278), Expect = 5e-28
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159
L + SL +++ E +L+G + +GK+TLLK + GL + GE+ V G S
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV-DGLDTSSE 71
Query: 160 HKTA--GSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPN 215
KVG + Q T+++ + F G+ ++ + + L+L
Sbjct: 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE----EIEERVAEALELVG 127
Query: 216 L----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-G 270
L +RP LSGGQK+R++ + P++++LDEP G+DP R+ + +LL+
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187
Query: 271 KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
G+T+I+ T +E + A V L G+I+A P
Sbjct: 188 GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 111 bits (279), Expect = 6e-28
Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 7/186 (3%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
VL + +L V++ EF +LG S GK+TLL+ I GL+ + GE+ + G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--- 70
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
G +GY+ QE A+ LT+ + + + G ++ + ++ ++ L E +
Sbjct: 71 --GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP 128
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
LSGG ++R++ A+ +P+L++LDEP +D L R+ + D LL+++ +TV++ T
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188
Query: 280 QYIEEA 285
++EA
Sbjct: 189 HDVDEA 194
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 108 bits (272), Expect = 1e-27
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 35/203 (17%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
VL++ SL ++ E +LG + AGK+TLLK + GL S GEI + G AS+ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
K+ Y+PQ L + G + L +RP
Sbjct: 70 ELARKIAYVPQALELLG-------------------------------LAHL--ADRPFN 96
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQ 280
LSGG+++R+ A+ +P +++LDEP +D + + +LL+ +G+TV+M
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 281 YIEEAND-ASEVAFLYKGRIIAQ 302
+ A A V L GRI+AQ
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQ 179
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 111 bits (281), Expect = 2e-27
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 14/213 (6%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASI 158
+++ SL +K+ EF LLG S GKTTLL+ I G + S GEI + G P
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-- 74
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
K +G + Q A+F +T++E + F + + ++ ++ + ++ L
Sbjct: 75 -EK---RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTV 275
R LSGGQ++R++ A++ +P++++LDEP +D +R++M +L ++ G T
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190
Query: 276 IMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDG 307
+ T EEA + +A + GRI +P+
Sbjct: 191 VYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 110 bits (277), Expect = 3e-27
Identities = 56/203 (27%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
++N S V E F LLG + AGKTT + I+GL ++GEI GG + + +
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLS 224
++GY+P+E ++ ++T+++ L + + GM ++ +++ + L++ + + +K LS
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQ 280
G ++++ F A++H+P+L+ILDEP G+DP L++ +++L + +G T+I ++
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE----EGATIIFSSH 188
Query: 281 YIEEANDASE-VAFLYKGRIIAQ 302
+E + + + L KG+ +
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLY 211
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 108 bits (272), Expect = 3e-27
Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
L + SL V+ EF L+G S GK+TLL+ I GL+ + GE+ ++ G P + G
Sbjct: 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVT----GPG 72
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
GY+ Q+ A+ LT+ + + + G+ ++ + + ++ L E Y
Sbjct: 73 PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN--AYPH 130
Query: 223 -LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQ 280
LSGG ++R++ A+ P +++LDEP +D L R+++ + LL ++ G+TV++ T
Sbjct: 131 QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190
Query: 281 YIEEA 285
I+EA
Sbjct: 191 DIDEA 195
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 106 bits (268), Expect = 6e-27
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG- 164
VL++ SL VK+ E + LG + AGKTT +K I+GL GEI G Y K
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG----KSYQKNIEA 70
Query: 165 -SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RP 219
++G + + + LT +E L + G+ + VL + L+ +
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR---IDE----VLDVVGLKDSAKKK 123
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
VK S G K+RL +A+L P L+ILDEP G+DP K + +L+ +G TV++++
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
Query: 280 QYIEEAND-ASEVAFLYKGRIIAQ 302
+ E A + + KG++I +
Sbjct: 184 HLLSEIQKVADRIGIINKGKLIEE 207
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 107 bits (268), Expect = 7e-27
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
++K + ++ S VK E LLG + AGKTT L+ + GL G V G
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV-DGFDVV 70
Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYS 208
A ++G++ ++ LT +E L +F +YG+ +E M +
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL- 129
Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
L+R V S G +++++ A++H P +++LDEP G+D + + + + ++
Sbjct: 130 -------LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL 182
Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
G+ ++ +T ++E V L++GR++
Sbjct: 183 RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 105 bits (265), Expect = 7e-27
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKT 162
VLN+ SL ++ E LLG S +GK+TLL+ I GL+ G I + G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
++G + Q+ A+F LT+ E N+
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLE------------------------------NIALG--- 100
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
LSGGQ++R++ A+ P +++LDEP +DP+ R+ + LL + G TV++ T
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 282 IEEA-NDASEVAFLYKGR 298
++EA A V L G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 106 bits (266), Expect = 2e-26
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 19/230 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L++ S V+ F LLG + AGK+TL + L +G+I V G H + A +
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG-HDLRRAPRAALA 74
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSHVLKLPNL 216
++G + Q+ + +L++++ L + ++G+ E + + + +
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADD------ 128
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
V+ L+GG +RR+ A+LH+P L++LDEP VG+DP R + ++ G +V
Sbjct: 129 --KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSV 186
Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
+ T ++E + L++GR++A + + L F +T
Sbjct: 187 LWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLALT 236
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 105 bits (265), Expect = 3e-26
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-----GHPAS 157
VL L V+R E ++G S +GK+TLL+ IVGL GE+ + G A
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--------- 208
+Y ++G + Q A+F LT+ E + F L + + S
Sbjct: 72 LYRLRR--RMGMLFQSGALFDSLTVFENVAF-----------PLREHTRLSEEEIREIVL 118
Query: 209 HVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
L+ L LSGG K+R++ A+ P+L++ DEP G+DP+ + DL
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 265 LQVFVG-KGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGFK 309
++ G T IM T ++ A ++ +A LY G+I+A+ +P+ +
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 105 bits (264), Expect = 9e-26
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 50/233 (21%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK- 161
V+L+ L V R E +LG S +GK+TLL+ I+GL +GEI + G + +
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79
Query: 162 --TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV-------LK 212
++G + Q+ A+F LT+ E + F +R+++ + L
Sbjct: 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFP--------------LREHTKLPESLIRELV 125
Query: 213 LPNLE----RPV---KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP------- 255
L LE R Y LSGG ++R++ AI P+L+ LDEP G+DP
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 256 -LVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
L+R +L G TVIM T ++ A VA L G++IA+ +P+
Sbjct: 186 ELIR----ELNDAL---GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 104 bits (261), Expect = 1e-25
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---Y 159
S L++ S +K+ E L+G S +GK+TL +AI+GL + G I G +
Sbjct: 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 160 HKTAGSKVGYMPQELAMF--------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
K ++ + Q+ M GE I E L G + E+ + V
Sbjct: 77 RKIRRKEIQMVFQD-PMSSLNPRMTIGEQ-IAEPLRIHGKLSK-KEARKEAVLLLLVGVG 133
Query: 212 KLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
+ +Y LSGGQ++R++ A+ P+L+I DEP +D V+ ++ DLL+
Sbjct: 134 LPEEVLN--RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 269 -VGKGRTVIMTT------QYIEEANDASEVAFLYKGRIIAQ 302
G T++ T I A VA +Y G+I+ +
Sbjct: 192 QEELGLTLLFITHDLGVVAKI-----ADRVAVMYAGKIVEE 227
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 102 bits (257), Expect = 1e-25
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 40/194 (20%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
VL + SL +K E ++G S +GK+TLLK ++ L + + GEI + G + ++
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLR 75
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS 224
+ Y+PQ+ +F TI+E N+ LS
Sbjct: 76 KNIAYVPQDPFLFSG-TIRE------------------------------NI------LS 98
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE 284
GGQ++R++ A+L P ++ILDE +DP + + L+ KG+TVI+ +
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLST 157
Query: 285 ANDASEVAFLYKGR 298
DA + L GR
Sbjct: 158 IRDADRIIVLDDGR 171
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 110 bits (276), Expect = 1e-25
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL + SL + E ++G S +GK+TLLK ++GL QG I +L G +
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI-LLDGVDLNDIDLA 543
Query: 163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-LER 218
+ +VGY+ Q+ +F +I+E + +E I Q+ +H + LP +
Sbjct: 544 SLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAG-AHEFIENLPMGYDT 601
Query: 219 PV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
PV LSGGQ++RL+ A+L KP++++LDE +DP + L +GRT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRT 660
Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
VI+ + A + L +G+I+ Q S +
Sbjct: 661 VIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 102 bits (256), Expect = 4e-25
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
L + E LLG + AGKTTLL+AI+GL ++G + V G P +GY+P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVP 55
Query: 172 Q--ELAMFGELTIKETLNFFGMIYGMDESIWLFQ------MRKYSHVLKLPNL----ERP 219
Q E A +++ T+ + G I + L+ L +RP
Sbjct: 56 QRHEFAWDFPISVAHTV-----MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP 110
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
V LSGGQ++R+ A+ +P +++LDEP G+D ++ + +L G G ++MTT
Sbjct: 111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPD 306
+ +A + L GR+IA +P
Sbjct: 171 HDLAQAMATCDRVVLLNGRVIADGTPQ 197
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 103 bits (260), Expect = 6e-25
Identities = 63/216 (29%), Positives = 116/216 (53%), Gaps = 15/216 (6%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+++ +L ++ EF VL+G S +GKTT LK I L + GEI + G + +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPVKY-- 222
K+GY+ Q++ +F LT+ E + + G D+ +++K + +L L L+ P +Y
Sbjct: 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE----RIKKRADELLDLVGLD-PSEYAD 130
Query: 223 -----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
LSGGQ++R+ A+ P ++++DEP +DP+ RK++ + ++ + G+T++
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311
T I+EA A +A + G I+ D+PD +
Sbjct: 191 FVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 104 bits (261), Expect = 8e-25
Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIY 159
+ L++ SL +K E LLG S AGK+TLL+ I GL+ G I L G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSN 71
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-- 217
KVG++ Q A+F +T+ + + FG+ + + +L+L LE
Sbjct: 72 LAVRDRKVGFVFQHYALFPHMTVADNIA-FGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM--WDLLQVFVGKGR 273
R LSGGQ++R++ A+ +P++++LDEP +D VRK + W L ++ G
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGV 189
Query: 274 TVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
T + T EEA + A V L +GRI PD
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 101 bits (255), Expect = 8e-25
Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 11/208 (5%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
V+N SL VK+ E LLG + AGKTT IVGL G+I L G + HK A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL-LDGQDITKLPMHKRA 73
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RP 219
+GY+PQE ++F +LT++E + I G+ + K +L+ ++
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKER---EEKLEELLEEFHITHLRKSK 130
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGG++RR+ A+ P+ ++LDEP GVDP+ + + ++++ +G V++T
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITD 190
Query: 280 QYIEEANDASEVAF-LYKGRIIAQDSPD 306
+ E ++ A+ +Y+G+++A+ +P+
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPE 218
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 99.5 bits (249), Expect = 2e-24
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTA 163
+L N S K E ++G S AGK+TLL A+ G + GE+ + G P + ++
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRP--LDKRSF 80
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
+GY+PQ+ + LT++ETL F KL + L
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMF---------------------AAKL-------RGL 112
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
SGG+++R+S + ++ P L+ LDEP G+D ++ LL+ GRT+I +
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 98.5 bits (246), Expect = 3e-24
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL N SL +K+ E LLG S +GK+TLL+ + G QGEI L G P S K
Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKA 72
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
S + + Q +F T++ NL R
Sbjct: 73 LSSLISVLNQRPYLFDT-TLRN------------------------------NLGRR--- 98
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQY 281
SGG+++RL+ +L +++LDEP VG+DP+ +++ L +F V K +T+I T +
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL--LSLIFEVLKDKTLIWITHH 156
Query: 282 IEEANDASEVAFLYKGRIIAQ 302
+ ++ FL G+II Q
Sbjct: 157 LTGIEHMDKILFLENGKIIMQ 177
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 99.5 bits (249), Expect = 6e-24
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHK 161
L SL V+R E LLG + AGKTTLLK I+GL G I G G P H+
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP---HE 74
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLE--- 217
A + Y+P+ +F LT++E L E Q R V +L P L+
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE----AQERDLEEVYELFPRLKERR 130
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
+ LSGG+++ L+ A++ +P+L++LDEP G+ P + + +++ ++ + G T+
Sbjct: 131 NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190
Query: 276 IMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
++ Q A + ++ L GRI+ +
Sbjct: 191 LLVEQNARFALEIADRGYVLENGRIVLSGTAA 222
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 104 bits (260), Expect = 7e-24
Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 25/243 (10%)
Query: 83 KEEEEEADEGKNTEKEELKPSNV---------VLNNCSLVVKRREFFVLLGASSAGKTTL 133
+ E E+ + ++ NV VL + S ++ E ++G S +GK+TL
Sbjct: 312 EPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTL 371
Query: 134 LKAIVGLKNISQGEIWVLGGHPAS-IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192
+K ++ L + + GEI ++ G I + ++G + Q+ +F TI+E + G
Sbjct: 372 IKLLLRLYDPTSGEI-LIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENI-ALGRP 428
Query: 193 YGMDESIWLFQMRKYSH----VLKLPN-LERPVKY----LSGGQKRRLSFTIAILHKPQL 243
DE I + K ++ + LP+ + V LSGGQ++RL+ A+L P +
Sbjct: 429 DATDEEIE--EALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486
Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
+ILDE +D + D L+ + KGRT ++ + +A + L GRI+ +
Sbjct: 487 LILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545
Query: 304 SPD 306
+ +
Sbjct: 546 THE 548
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 98.6 bits (246), Expect = 1e-23
Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 17/209 (8%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
L S +++ E +G + AGKTT LK + GL + GE+ V G P
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK------- 87
Query: 165 SKVGYMPQELAMFGE-------LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL 216
+ ++ + +FG+ L + ++ IY + + + ++ + S +L L L
Sbjct: 88 RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL 147
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTV 275
+ PV+ LS GQ+ R A+LH+P+++ LDEP +G+D + ++ + + L+ + +G TV
Sbjct: 148 DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
Query: 276 IMTTQYIEE-ANDASEVAFLYKGRIIAQD 303
++T+ Y+++ A V + KGR++
Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 96.4 bits (241), Expect = 6e-23
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--GHPASIYHKTA 163
L + +L ++ EF ++G S +GK+TLL + GL + GE+ + G S
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 164 --GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---- 217
K+G++ Q + +LT+ E + +I G + R +L++ LE
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGR---RKRAAEELLEVLGLEDRLL 136
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
+ LSGGQ++R++ A+++ P++I+ DEP +D K + +LL+ + G+T+
Sbjct: 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTI 196
Query: 276 IMTTQYIEEANDASEVAFLYKGRI 299
IM T E A A V L G+I
Sbjct: 197 IMVTHDPELAKYADRVIELKDGKI 220
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 98.5 bits (246), Expect = 7e-23
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
S VL + +L ++ EF VLLG S GK+TLL+ I GL+ + GEI + G +
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL-IDGRDVT---D 69
Query: 162 TAGSK--VGYMPQELAMFGELTIKETLNF-FGM-IYGMDESIWLFQMRKYSHVLKLPN-L 216
K + + Q A++ +T+ E N FG+ + G+ ++ ++++ + +L L + L
Sbjct: 70 LPPEKRGIAMVFQNYALYPHMTVYE--NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLL 127
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR-------KRMWDLLQVFV 269
R LSGGQ++R++ A++ KP++ +LDEP +D +R K++ + L
Sbjct: 128 NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL---- 183
Query: 270 GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
G T I T EA A + + GRI +P
Sbjct: 184 --GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 99.7 bits (249), Expect = 2e-22
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ VL+ SL + E +LG S +GK+TLL + GL + QGE+ + G +S+
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN-LER 218
+V Q+ +F T++E L DE +W L ++ + LP+ L+
Sbjct: 406 EVRRRVSVCAQDAHLFDT-TVRENLR-LARPDATDEELWAALERVGLADWLRALPDGLDT 463
Query: 219 PV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGR 273
+ LSGG+++RL+ A+L +++LDEP +D + DLL GR
Sbjct: 464 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA--ALSGR 521
Query: 274 TVIMTT 279
TV++ T
Sbjct: 522 TVVLIT 527
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 95.3 bits (237), Expect = 2e-22
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 13/211 (6%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
S L++ +L V LLG S +GK+TLL+ I GL+ G I L G A+ H
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR-LNGQDATRVH-A 69
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----R 218
K+G++ Q A+F LT+++ + F I + + +L+L LE R
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK---AKIKARVEELLELVQLEGLGDR 126
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGKGRTVI 276
LSGGQ++R++ A+ +PQ+++LDEP +D VRK R W L ++ T +
Sbjct: 127 YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW-LRKLHDEVHVTTV 185
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
T EEA + A + + G+I SPD
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 94.2 bits (235), Expect = 2e-22
Identities = 55/201 (27%), Positives = 105/201 (52%), Gaps = 5/201 (2%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ L++ +L + EF VLLG S GKTT L+ I GL+ + G I++ G + K
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220
+ + Q A++ +T+ + + F + + + ++R+ + +L++ + L+R
Sbjct: 71 DRD--IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP 128
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTT 279
K LSGGQ++R++ AI+ +P++ ++DEP +D +R +M L+ + G T I T
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188
Query: 280 Q-YIEEANDASEVAFLYKGRI 299
+E A +A + G+I
Sbjct: 189 HDQVEAMTMADRIAVMNDGQI 209
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 94.3 bits (235), Expect = 3e-22
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-----ASIYHKTA 163
+ E + GAS AGK+TLL+ I GL+ G I VL G I
Sbjct: 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPPQ 73
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
K+G + Q+ A+F L ++E L F G+ + + + +L L +L R
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAF-GLKRKRNRED-RISVDELLDLLGLDHLLNRYPAQ 131
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-----GRTVIM 277
LSGG+K+R++ A+ +P+L++LDEP +D +R L + + VI
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALR----LQLLPELKQIKKNLNIPVIF 187
Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQD 303
T + EA A + + GR+
Sbjct: 188 VTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 94.2 bits (235), Expect = 3e-22
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA--- 163
L++ SL +++ EF L G S AGKTTLLK + G S+G++ + G +
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-AGEDVNRLRGRQLPL 76
Query: 164 -GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
++G + Q+ + + T+ E + + G E R+ L+ LE
Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI---QRRVGAALRQVGLEHKADA 133
Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
LSGG+++R++ AI++ P L++ DEP +DP + +R+ DLL+ +G TVI+
Sbjct: 134 FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
Query: 279 T 279
T
Sbjct: 194 T 194
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 94.6 bits (236), Expect = 3e-22
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 20/221 (9%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHK 161
V L+ SL +K EFF LLG S GKTTLL+ I G + + GEI +L G + +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHKR 72
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---- 217
V + Q A+F LT+ E + F + + ++ + + L L LE
Sbjct: 73 ----PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE---IKERVAEALDLVQLEGYAN 125
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVI 276
R LSGGQ++R++ A++++P++++LDEP +D +RK M +L ++ G T +
Sbjct: 126 RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFV 185
Query: 277 MTTQYIEEANDAS-EVAFLYKGRIIAQDSPDGFKSKYSMPK 316
T EEA S +A + KG+I +P + Y P
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGTP---EEIYEEPA 223
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 95.9 bits (239), Expect = 1e-21
Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 18/240 (7%)
Query: 81 GKKEEE--EEADEGKNTEKEELKPSNVVL--NNCSLVVKRREFFVLLGASSAGKTTLLKA 136
GK + + D+GK ++ E LK + +V+ N+ SL V+ E FV++G S +GK+TL++
Sbjct: 15 GKNPKRALKLLDQGK-SKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRL 73
Query: 137 IVGLKNISQGEIWVLGGHPASIYHKT----AGSKVGYMPQELAMFGELTIKETLNFFGMI 192
+ L ++GEI V G A + K+ + Q A+ T+ E + F +
Sbjct: 74 LNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV 133
Query: 193 YGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248
G+ ++ + + L+L LE + LSGG ++R+ A+ + P ++++DE
Sbjct: 134 QGVPKAE---REERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE 190
Query: 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
+DPL+R M D L K +T++ T ++EA +A + G I+ +P+
Sbjct: 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPE 250
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 96.9 bits (242), Expect = 1e-21
Identities = 65/256 (25%), Positives = 110/256 (42%), Gaps = 36/256 (14%)
Query: 72 EEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV---------VLNNCSLVVKRREFFVL 122
E G+K E N E+ N+ L++ +L +K + L
Sbjct: 299 ESPVATPGSGEKAEV------ANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTAL 352
Query: 123 LGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAGSKVGYMPQELAMFGELT 181
+GAS AGK+TLL ++G +QGEI V G + + ++ ++ Q +F T
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRV-NGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410
Query: 182 IKETLNFFG------MIYGMDESIWLFQMRKYSHVLKLPN-LERPV----KYLSGGQKRR 230
I+E + I + L + P+ L+ + LSGGQ +R
Sbjct: 411 IRENILLARPDASDEEIIAALDQAGL------LEFVPKPDGLDTVIGEGGAGLSGGQAQR 464
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
L+ A+L L++LDEP +D + + LQ K +TV++ T +E+A DA
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADR 523
Query: 291 VAFLYKGRIIAQDSPD 306
+ L GR++ Q + +
Sbjct: 524 IVVLDNGRLVEQGTHE 539
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 96.6 bits (241), Expect = 2e-21
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L N +L + + E +LG S +GK+TLL+ + G + QG I + G AS+ +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ 408
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-LFQMRKYSHVLKLPNLERPV 220
+ + Q + +F T+++ L DE +W Q +L P
Sbjct: 409 ALRETISVLTQRVHLFSG-TLRDNL-RLANPDASDEELWAALQQVGLEKLL----ESAPD 462
Query: 221 KY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
LSGG++RRL+ A+LH L +LDEP G+DP+ +++ LL
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HA 521
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+G+T++M T + + L G+II +
Sbjct: 522 EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 92.3 bits (230), Expect = 3e-21
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 17/212 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
V+N+ SL V E LLG + AGKTT IVGL G+I L + HK A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL-LDDEDITKLPMHKRA 77
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR--------KYSHVLKLPN 215
+GY+PQE ++F +LT+++ + I D + +H+
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA 137
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
LSGG++RR+ A+ P+ I+LDEP GVDP+ + +++ +G V
Sbjct: 138 YS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGV 192
Query: 276 IMTTQYIEEANDASEVAFL-YKGRIIAQDSPD 306
++T + E D + A++ G+++A+ SP+
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPE 224
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 91.6 bits (228), Expect = 4e-21
Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 21/214 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+NN +L + + EF VL+G S +GKTT +K I L + GEI++ G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPNLERPVKY- 222
K+GY+ Q++ +F +T++E + + W + + +L L L+ P ++
Sbjct: 76 KIGYVIQQIGLFPHMTVEENIALVPKLLK-----WPKEKIRERADELLALVGLD-PAEFA 129
Query: 223 ------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL---LQVFVGKGR 273
LSGGQ++R+ A+ P L+++DEP +DP+ R ++ + LQ +GK
Sbjct: 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK-- 187
Query: 274 TVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
T++ T I+EA A +A + G I+ +PD
Sbjct: 188 TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 91.1 bits (227), Expect = 6e-21
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 26/212 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---T 162
L + SL + EF L+G S AGK+TLL+ + GL + G + + G + K
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLK-LPNLER- 218
++G + Q+ + L++ E + G + S W LF + + L LER
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVL-SGRLGRR--STWRSLFGLFPKEEKQRALAALERV 132
Query: 219 --------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKRMWDLLQVFV 269
LSGGQ++R++ A++ +P+LI+ DEP +DP R+ M L ++
Sbjct: 133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
+G TVI++ + ++A Y RI+
Sbjct: 193 EEGITVIVSLHQV-------DLAREYADRIVG 217
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 90.9 bits (226), Expect = 7e-21
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V L++ SL + E LLG S +GKTTLL+ I GL+ G I GG A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL-FGGEDAT--DVPVQ 72
Query: 165 SK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPNLE----R 218
+ VG++ Q A+F +T+ + + F + E ++R K +LKL L+ R
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR 132
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGKGRTVI 276
LSGGQ++R++ A+ +P++++LDEP +D VRK R W L ++ T +
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTV 191
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
T EEA + A V + KGRI +PD
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 89.1 bits (222), Expect = 2e-20
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 12/204 (5%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
L SL +++ EF ++G S +GK+TLL + GL + GE+ V G + + K
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELA 77
Query: 165 S----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--- 217
+ +G++ Q + +LT E + ++ G+ + + +L+ L
Sbjct: 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER---RERAEELLERVGLGDRL 134
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
LSGGQ++R++ A+ + P++I+ DEP +D K + +LL+ + G T+
Sbjct: 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTI 194
Query: 276 IMTTQYIEEANDASEVAFLYKGRI 299
++ T E A A + L G+I
Sbjct: 195 VVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 89.2 bits (222), Expect = 2e-20
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 13/208 (6%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
L + S + + EF L G S AGK+TLLK I G + ++G+I V GH S
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV-NGHDLSRLKGREIPF 76
Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
++G + Q+ + + T+ E + + G R+ S VL L L+ +
Sbjct: 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI---RRRVSEVLDLVGLKHKARA 133
Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
LSGG+++R++ AI+++P +++ DEP +DP + + L + G TV+M
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193
Query: 279 TQYIEEANDASE-VAFLYKGRIIAQDSP 305
T +E N V L GR++ +S
Sbjct: 194 THDLELVNRMRHRVLALEDGRLVRDESR 221
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 89.5 bits (223), Expect = 2e-20
Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 32/224 (14%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL SL V++ E V++G S +GK+TLL+ + GL+ G I V G + K
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG---EDVGDKK 70
Query: 163 A----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKLPN 215
KVG + Q+ +F LT+ E + + + ++ K L+L
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENV-----TLAP---VKVKKLSKAEAREKALEL-- 120
Query: 216 LERPV-------KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
LE+ V Y LSGGQ++R++ A+ P++++ DEP +DP + + D++
Sbjct: 121 LEK-VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 266 QVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308
+ +G T+I+ T + A + A V F+ +G+II + P+ F
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 93.0 bits (232), Expect = 3e-20
Identities = 72/317 (22%), Positives = 128/317 (40%), Gaps = 52/317 (16%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL----KNISQGEIWVLGGHPASIY 159
+ + S V+ E ++G S +GK+TL A++GL I+ GE+ +L G
Sbjct: 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLGL 80
Query: 160 HKTA-----GSKVGYMPQE-LAMFGELT-----IKETLNFFGMIYG---MDESIWLFQMR 205
+ G ++ + Q+ + + I+E L G ++ L +
Sbjct: 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQ- 139
Query: 206 KYSHVLKLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
+ LP+ ER +Y LSGG ++R+ +A+ KP+L+I DEP +D + ++
Sbjct: 140 -----VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194
Query: 263 DLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD----GFKSKYSMPK 316
DLL+ + G V+ T + + A V +YKG I+ + + Y+
Sbjct: 195 DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL 254
Query: 317 LSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVA--IFNATMGSPPA 374
L+ V D P EP + + + K + +F G A
Sbjct: 255 LAAV---PRLGDEKIIRLPRRGPLRAEPLLSVRNLS-----KRYGSRKGLFVRERGEVKA 306
Query: 375 GLKMGV--VNYELR-GE 388
V V+++LR GE
Sbjct: 307 -----VDDVSFDLREGE 318
Score = 72.2 bits (178), Expect = 2e-13
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162
+++ S ++ E L+G S +GK+TL + + GL S G I G +
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 163 -AGSKVGYMPQELAMFGELT----IKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN 215
++ + ++ +T + E L G G + + +L+L
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARV--------AELLELVG 417
Query: 216 LERPV--KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L +Y LSGGQ++R++ A+ +P+L+ILDEP +D V+ ++ +LL+
Sbjct: 418 LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477
Query: 271 K-GRTVIMTT------QYIEEANDASEVAFLYKGRIIAQDSPD 306
+ G T + + +YI A VA +Y GRI+ + +
Sbjct: 478 ELGLTYLFISHDLAVVRYI-----ADRVAVMYDGRIVEEGPTE 515
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 87.7 bits (218), Expect = 4e-20
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
K +L++ SL + E L G + AGKTTL K + GL S G I +L G P
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIK--A 66
Query: 161 KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
K +GY+ Q++ +F + +++E L + VLK +L
Sbjct: 67 KERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNE-------QAETVLKDLDLYA 118
Query: 219 PVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
+ LSGGQK+RL+ A+L L+I DEP G+D +R+ +L++ +G+
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 275 VIMTTQYIE 283
VI+ T E
Sbjct: 179 VIVITHDYE 187
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 87.7 bits (218), Expect = 8e-20
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 16/211 (7%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL + + +K E ++G + AGKTTL+ ++ + +G+I + G I K+ S
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPN-----LERP 219
+G + Q+ +F TI E + +E I + ++KLPN L
Sbjct: 78 MIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN 136
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTV 275
LS G+++ L+ A+L P+++ILDE +D L+++ + L+ KGRT
Sbjct: 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-----KGRTS 191
Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
I+ + +A ++ L G+II + + D
Sbjct: 192 IIIAHRLSTIKNADKILVLDDGKIIEEGTHD 222
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 87.5 bits (218), Expect = 9e-20
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 35/226 (15%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
V L++ S V+ E L+G + AGKTTL I G + G + G G P H
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP---H 70
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYS--------H 209
+ A +G Q +F ELT+ E + M+ + L + R+
Sbjct: 71 EIARLGIGRTFQIPRLFPELTVLENV----MVAAQARTGSGLLLARARREEREARERAEE 126
Query: 210 VLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
+L+ L +RP LS GQ+RRL A+ P+L++LDEP G++P + + +L+
Sbjct: 127 LLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 266 QVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
+ +G TV++ +E + A V L +GR+IA+ +PD
Sbjct: 187 RELRERGITVLL----VEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 87.7 bits (218), Expect = 1e-19
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 29/211 (13%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG 164
LNN SL ++R E ++G S +GK+TL + + GL+ S G I + G A K
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 165 SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----- 217
V + Q ++ T+ L+ +G+ +S ++ + +L L
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS-----QQRIAELLDQVGLPPSFLD 136
Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--T 274
RP + LSGGQ++R++ A++ +P+L+ILDEP +D V+ ++ +LL + K R T
Sbjct: 137 RRPHE-LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-LKKERGLT 194
Query: 275 VIMTTQ------YIEEANDASEVAFLYKGRI 299
+ + ++ +A + G+I
Sbjct: 195 YLFISHDLALVEHM-----CDRIAVMDNGQI 220
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 88.1 bits (219), Expect = 1e-19
Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 15/228 (6%)
Query: 91 EGKNTEKEELKPSNVV--LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148
+++E LK + +N+ SL V+ E FV++G S +GK+TLL+ I L + G++
Sbjct: 22 AKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81
Query: 149 WVLGGHPASIYHKTA----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM 204
+ G A++ K K+ + Q A+ T+ E + F + G+ + +
Sbjct: 82 LIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAE---RE 138
Query: 205 RKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
+ + L+L LE + LSGG ++R+ A+ P ++++DE +DPL+R+
Sbjct: 139 ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
Query: 261 MWDLLQVFVGK-GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
M D L + +T++ T ++EA +A + GR++ +P+
Sbjct: 199 MQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 83.5 bits (207), Expect = 1e-19
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGELTIKETLNFF 189
+TLLK I GL + G I + G + + ++G + Q+ +F ELT++E L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 190 GMIYGMDESIWLFQMRKYSHVLKLPNLER--PVKYLSGGQKRRLSFTIAILHKPQLIILD 247
D + + + LP+ PV LSGGQK+R++ A+L KP+L++LD
Sbjct: 61 LRDKEADA-----RAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 248 EP 249
EP
Sbjct: 116 EP 117
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 87.8 bits (218), Expect = 1e-19
Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 42/249 (16%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
LN SL + +F ++G++ AGK+TLL AI G + G+I + G + K+
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG---VDVTKKS 74
Query: 163 AGSKVGYMPQ-----ELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLK--- 212
+ + + ELTI+E L ++ + R S L
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENL-----------ALAESRGKKRGLSSALNERR 123
Query: 213 ---------------LPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV 257
L + LSGGQ++ LS +A LH P++++LDE +DP
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183
Query: 258 RKRMWDLLQVFVGKGR-TVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMP 315
+ + +L V + + T +M T +E+A D + + L+ G+I+ D K+ ++
Sbjct: 184 AEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV-LDVTGEEKASLTVL 242
Query: 316 KLSDVFYKI 324
L +F KI
Sbjct: 243 DLIQMFEKI 251
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 87.0 bits (216), Expect = 2e-19
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
L N +L + EF ++G S AGK+TLL+ I L S G I + G + K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75
Query: 162 TAGSKVGYMPQELAMFGELTIKET-----LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
++G + Q + LT+ E L + L + + L L
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRS-----LLGRFSEEDKERALSAL 130
Query: 217 ER---------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR-MWDLLQ 266
ER LSGGQ++R++ A+ +P LI+ DEP +DP K+ M L +
Sbjct: 131 ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
+ G TVI+ ++ A A + L G I+ +P
Sbjct: 191 INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 91.2 bits (226), Expect = 2e-19
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
LG + AGKTT L + GL + G + V GG +G PQ +F LT
Sbjct: 961 FLGHNGAGKTTTLSILTGLLPPTSGTVLV-GGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019
Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240
+ E + F+ + G +M L + + LSGG +R+LS IA +
Sbjct: 1020 VAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299
++++LDEP GVDP R+ +WDLL + GRT+IM+T +++EA+ +A + +GR+
Sbjct: 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
Query: 300 IAQDSP 305
+P
Sbjct: 1139 YCSGTP 1144
Score = 87.8 bits (217), Expect = 3e-18
Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 29/284 (10%)
Query: 44 LWVLLLYELTLECYTLEKEKE---EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
L +L+ + L + E KE +E+D+ EE + G K + +E
Sbjct: 1892 LTLLIQHHFFLSRWIAEPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTS 1951
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
P+ ++ + V+ E F LLG + AGKTT K + G ++ G+ V G SI
Sbjct: 1952 SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG---KSILT 2005
Query: 161 KTAG--SKVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSH 209
+ +GY PQ A+ LT +E L + + G+ + SI + Y+
Sbjct: 2006 NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA- 2064
Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
+R SGG KR+LS IA++ P L++LDEP G+DP R+ +W+ + +
Sbjct: 2065 -------DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 270 GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312
+GR V++T+ +EE + +A + KG + KSK+
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 86.0 bits (214), Expect = 3e-19
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L + S V R E L+G + AGK+TLL+ + G+ G + V G +S+ G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLGLGGG- 94
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMD--------ESIWLF-QMRKYSHVLKLPNL 216
ELT +E + G + G+ + I F ++ + +
Sbjct: 95 ----------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF--------I 136
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
+ PVK S G K RL+F IA +P ++++DE D +++ L+ + +G+TVI
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196
Query: 277 MTT---QYIEEANDASEVAFLYKGRIIA 301
+ + I+ D L KG+I
Sbjct: 197 LVSHDPSSIKRLCDR--ALVLEKGKIRF 222
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 86.7 bits (215), Expect = 3e-19
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 10/206 (4%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L + SL + E V+LG S GKTTLL I G S+G I L G G+
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIE----GPGA 74
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LS 224
+ G + Q A+ L + + + F + G++++ + ++ L E + LS
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLS 134
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIE 283
GG ++R+ A+ +PQL++LDEP +D L R++M +LL ++ G+ V++ T IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 284 EA-NDASEVAFLY--KGRIIAQDSPD 306
EA A+ + L GR++ + D
Sbjct: 195 EALFLATRLVVLSPGPGRVVERLPLD 220
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 87.4 bits (217), Expect = 5e-19
Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
LGA+ AGK+T LK + GL + G++ V G P + S M Q+L ++ +L
Sbjct: 55 FLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114
Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAILHK 240
++L +IY + + + ++ + +L L L+ PV+ LS GQ+ R A+LH
Sbjct: 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHP 174
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVIMTTQYIEE-ANDASEVAFLYKGR 298
P+++ LDEP VG+D + + + L+ + TV++TT ++ A V + +G+
Sbjct: 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQ 234
Query: 299 IIAQDSPDGFKSKYS 313
++ + + ++
Sbjct: 235 LVFDGTLAQLQEQFG 249
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 88.0 bits (218), Expect = 5e-19
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---- 158
+N+ L + + E FV++G S +GK+T ++ + L + G+I++ G +
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--HVLKLPNL 216
+ K+G + Q+ A+F +TI + + G + W Q RK +LKL L
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTS-----LGPELLGWPEQERKEKALELLKLVGL 119
Query: 217 ERPV-KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGK 271
E +Y LSGG ++R+ A+ +P ++++DE +DPL+R M D L ++
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 272 GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
+T++ T ++EA + + G I+ +PD
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPD 215
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 84.2 bits (209), Expect = 7e-19
Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+L++ +L +++ + + ++G S +GK+TLL I L+ G++++ G + K A
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 165 S----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL---PNLE 217
K+GY+ Q A+ T++E L+ G+ Y S + +K + K+ L+
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDL-GLKY-KKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
+ + LSGG+++R++ AIL P LI+ DEP +DP R + DLL +G+T+I+
Sbjct: 130 QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIII 189
Query: 278 TTQYIEEANDASEVAFL 294
T E A A V L
Sbjct: 190 VTHDPEVAKQADRVIEL 206
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 84.7 bits (210), Expect = 8e-19
Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-GHPASIYHKTAGSKVGY 169
L V E +LG S AGK+TLL I G + + GEI + G H AS A V
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS---PPAERPVSM 75
Query: 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWL--FQMRKYSHVLKLPNLE----RPVKYL 223
+ QE +F LT+ + + G+ + L Q K L R L
Sbjct: 76 LFQENNLFAHLTVAQNIGL-----GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130
Query: 224 SGGQKRRLSFTIAIL-HKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
SGGQ++R++ ++ +P L +LDEP +DP +R M L+ Q+ + T++M T +
Sbjct: 131 SGGQRQRVALARCLVREQPIL-LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGF 308
E+A A V FL GRI AQ S
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 86.8 bits (215), Expect = 1e-18
Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 24/244 (9%)
Query: 81 GKKEEEEEA--DEGKNTEKEELKPSNVVL--NNCSLVVKRREFFVLLGASSAGKTTLLKA 136
G + +E A D+GK T +E L + +VL +N SL ++ E VL+G S +GK+TLL+A
Sbjct: 11 GDQPDEALALLDQGK-TREEILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRA 69
Query: 137 IVGLKNISQGEIWVL-GGHPASIYHKTAGS-------KVGYMPQELAMFGELTIKETLNF 188
+ GL +S+G + V G + + A + +V + Q+ A+ T++E + F
Sbjct: 70 VNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAF 129
Query: 189 FGMIYGMDESIWLFQMRKYSH-VLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQL 243
+ GM ++ + RK L+L L +R LSGG ++R+ A + +
Sbjct: 130 GLEMQGMPKA----ERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPI 185
Query: 244 IILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIA 301
+++DEP +DPL+R ++ D LL++ +T++ + ++EA + +A + GRII
Sbjct: 186 LLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQ 245
Query: 302 QDSP 305
+P
Sbjct: 246 HGTP 249
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 85.7 bits (213), Expect = 1e-18
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGH-----P 155
++ S +K+ E ++G S +GK+ L KAI+GL I GEI + G
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLSLS 78
Query: 156 ASIYHKTAGSKVGYMPQELAM------------FGELTIKETLNFFGMIYGMDESIWLFQ 203
K G ++ + Q+ M E ++ + +I L +
Sbjct: 79 EKELRKIRGKEIAMIFQD-PMTSLNPVMTIGDQIAE-VLRLHGKGLSKKEAKERAIELLE 136
Query: 204 MRKYSHVLKLPNLERPVK-Y---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259
+ + +P+ ER +K Y LSGG ++R+ +A+ P+L+I DEP +D V+
Sbjct: 137 L------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 260 RMWDLLQVFV-GKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
++ DLL+ KG +I+ T + + ++ VA +Y GRI+
Sbjct: 191 QILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 82.9 bits (206), Expect = 2e-18
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 48/222 (21%)
Query: 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156
+ ++ L + +L V + E ++G +GK++LL A++G E+ L G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG-------ELEKLSG--- 60
Query: 157 SIYHKTAGSKVGYMPQE-LAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLP 214
S+ + Y+ QE G TI+E N FG + DE +Y V+K
Sbjct: 61 SVSV---PGSIAYVSQEPWIQNG--TIRE--NILFGKPF--DE-------ERYEKVIKAC 104
Query: 215 NLERPVKY---------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259
LE ++ LSGGQK+R+S A+ + +LD+P VD V +
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 260 RMWDLLQVFVG---KGRTVIMTTQYIEEANDASEVAFLYKGR 298
+++ +G +T I+ T ++ A ++ L GR
Sbjct: 165 HIFE--NCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 83.3 bits (207), Expect = 3e-18
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 36/221 (16%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
+L SL V + E +LG + GKTTLLK ++GL + G I L G + H+ A
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHERA 73
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----------ESIW-----LFQMRKYS 208
+ + Y+PQ +F LT++E L G+ + I+ L +M
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLT-----GLAALPRRSRKIPDEIYELFPVLKEMLG-- 126
Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
R LSGGQ+++L+ A++ +P+L++LDEP G+ P + K + +++
Sbjct: 127 ---------RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL 177
Query: 269 VG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307
G +++ QY++ A + A + +GR++A + D
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 82.6 bits (205), Expect = 3e-18
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL L VK+ E V++G S +GK+TLL+ I L+ G I + G +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG---LKLTDDK 68
Query: 163 AG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHV 210
KVG + Q+ +F LT+ E + I + M K +
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENI--------TLAPIKVKGMSKAEAEERALELL 120
Query: 211 LKLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
K+ ++ Y LSGGQ++R++ A+ P++++ DEP +DP + + D+++
Sbjct: 121 EKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180
Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299
+G T+++ T + A + A V F+ GRI
Sbjct: 181 LAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 81.5 bits (202), Expect = 3e-18
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 39/198 (19%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL N S ++ E ++G S +GK+TL + I+GL + G + L G S +
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPN 72
Query: 163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
G VGY+PQ+ +F +I E +
Sbjct: 73 ELGDHVGYLPQDDELFSG-SIAENI----------------------------------- 96
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LSGGQ++RL A+ P++++LDEP +D + + + G T I+
Sbjct: 97 -LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155
Query: 282 IEEANDASEVAFLYKGRI 299
E A + L GR+
Sbjct: 156 PETLASADRILVLEDGRV 173
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 83.1 bits (206), Expect = 3e-18
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLGGHPASIYHKT 162
+LN+ SL V+ + +LG+S +GKTTLL AI G + G+I G P
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF-NGQPRKPD--Q 78
Query: 163 AGSKVGYMPQELAMFGELTIKETLNF---FGMIYGMDESIWLFQMRKYSHVLKLPNLERP 219
V Y+ Q+ + LT++ETL + + ++I + R +L+ L R
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI--RKKRVEDVLLRDLALTRI 136
Query: 220 ----VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
VK +SGG++RR+S + +L P+++ILDEP G+D + L + R V
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 276 IMT 278
I+T
Sbjct: 197 ILT 199
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 80.9 bits (200), Expect = 8e-18
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 8/186 (4%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162
VL + +R E LLGA+ AGK+TLL + GL G + ++ G P K
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLE 65
Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RP 219
+VG + Q + +F + + + F + G+ E+ ++R+ + L RP
Sbjct: 66 RRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGG+K+R++ A+ +P +++LDEP G+DP R++M +L+ +G TV+++T
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184
Query: 280 QYIEEA 285
++ A
Sbjct: 185 HDVDLA 190
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 85.5 bits (212), Expect = 1e-17
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAG 164
L N S V K E ++G+S AGKTTL+ A+ K + +L G P A
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-MRKYSHVLKLPNL------- 216
S Y+ Q+ LT++E L F + M + + + VL+ L
Sbjct: 101 S--AYVQQDDLFIPTLTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTR 157
Query: 217 ---ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
VK LSGG+++RL+F +L P L+ DEP G+D + + +L+ KG+
Sbjct: 158 IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK 217
Query: 274 TVIMT----TQYIEEANDASEVAFLYKGRIIAQDSPD 306
T+I T + + E D ++ + +GR+ SPD
Sbjct: 218 TIICTIHQPSSELFELFD--KIILMAEGRVAYLGSPD 252
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 81.1 bits (200), Expect = 1e-17
Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK--VG 168
L V E ++G S AGK+TLL I G + G I V + A + V
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS----HTGLAPYQRPVS 73
Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVLKLPN-LERPVKY 222
+ QE +F LT+++ + G+ + L ++ + + + + L+R +
Sbjct: 74 MLFQENNLFAHLTVRQNIGL-----GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ 128
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
LSGGQ++R++ ++ +++LDEP +DPL+R+ M L+ Q+ + RT++M T +
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 282 IEEA-NDASEVAFLYKGRI 299
+ +A AS++A + +G+I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 81.9 bits (203), Expect = 1e-17
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 24/249 (9%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT- 162
+ L + +L + + E ++G S AGK+TLL+++ GL + + GEI G + K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76
Query: 163 --AGSKVGYMPQELAMFGELTIKETL------------NFFGMIYGMDESIWLFQMRKYS 208
+G + Q+ + L++ E + + FG+ D++ L + +
Sbjct: 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER-- 134
Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKRMWDLLQV 267
V L + LSGGQ++R++ A++ +P++I+ DEP +DP +K M L +
Sbjct: 135 -VGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 268 FVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
G TVI+ ++ A A + L GRI+ DG S+ + L +++ +
Sbjct: 194 NQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF----DGPASELTDEALDEIYGNEIS 249
Query: 327 DDGTSSGPP 335
+D
Sbjct: 250 EDINRGVEN 258
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 82.5 bits (204), Expect = 2e-17
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 8/205 (3%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L+ S ++ LG + AGK+T +K I G G + V G K
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG-EDVLQNPKEVQR 75
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLS 224
+GY+P+ ++ ++ ++E L F IYGM + ++ + ++ L P + + LS
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLS 135
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDP--LVRKRMWDLLQVFVGKGRTVIMTTQYI 282
G ++R+ A++H P+++ILDEP G+DP LV R + +GK +T+I++T +
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN---VIKNIGKDKTIILSTHIM 192
Query: 283 EEAND-ASEVAFLYKGRIIAQDSPD 306
+E V + KG+I+A D
Sbjct: 193 QEVEAICDRVIIINKGKIVADKKLD 217
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 81.1 bits (200), Expect = 2e-17
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
V+ + SL V E LLG + AGKTT +VG+ G I ++ S+ H A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLHARA 76
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG-------MDESIWLFQMRKYSHVLKLPNL 216
+GY+PQE ++F L++ + L I D + L + H+ ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD--SM 134
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
+ LSGG++RR+ A+ P+ I+LDEP GVDP+ + +++ G V+
Sbjct: 135 GQS---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 277 MTTQYIEEANDASEVAFLY-KGRIIAQDSPD 306
+T + E E A++ +G +IA +P
Sbjct: 192 ITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 83.9 bits (208), Expect = 2e-17
Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
L S V E L+G S AGK+TLL ++G + ++G I V G A +
Sbjct: 334 RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-LERP 219
++ ++PQ +F TI E + D I R V LP L+ P
Sbjct: 394 WRDQIAWVPQHPFLF-AGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTP 451
Query: 220 V----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGK 271
+ LSGGQ +RL+ A L L++LDEP +D V + + L Q
Sbjct: 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ----- 506
Query: 272 GRTVIMTTQYIEEANDASEV 291
GRTV++ T + A A +
Sbjct: 507 GRTVLLVTHRLALAALADRI 526
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 80.7 bits (200), Expect = 2e-17
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH 160
L + SL + + E L+G S GK+TLL+ + L ++ +GE+ + G IY
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG---KDIYD 71
Query: 161 KTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
+VG + Q+ F +I + + + ++G+ L + + L+
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVE--EALRKAA 128
Query: 216 LERPVK------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
L VK LSGGQ++RL A+ ++P++++LDEP +DP+ ++ +L+
Sbjct: 129 LWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL- 187
Query: 270 GKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGF 308
K T+++ T +++A ++ AFL GR++ +
Sbjct: 188 KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 79.8 bits (197), Expect = 3e-17
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 20/209 (9%)
Query: 102 PSNVV-LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
P+ L+ ++ + EF L+G S AGK+TLLK I + + G I V G S
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-NGQDVSDLR 69
Query: 161 KTA----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
A K+G + Q+ + + + E + F + G+ ++ L+L L
Sbjct: 70 GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREI---RKRVPAALELVGL 126
Query: 217 ERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+ LSGG+++R++ AI++ P ++I DEP +DP + +LL+ G
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIA 301
TV++ T A E+ + R+IA
Sbjct: 187 TTVVVATH-------AKELVDTTRHRVIA 208
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 80.1 bits (198), Expect = 3e-17
Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 96 EKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155
E L N SL V+R ++FV+LG + +GK+ LL+ I G G+I + G
Sbjct: 4 ENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63
Query: 156 ASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-QMRKYSHVLKLP 214
++ + Y+PQ A+F +T+ + + +G+ + + ++ + + +L +
Sbjct: 64 TNL--PPEKRDISYVPQNYALFPHMTVYKNIA-YGLKKRKVDKKEIERKVLEIAEMLGID 120
Query: 215 N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-G 272
+ L R + LSGG+++R++ A++ P++++LDEP +D ++++ + L+ + G
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
TV+ T EEA A +VA + G++I
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 82.0 bits (203), Expect = 4e-17
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L + SL VK+ EF LLG S GKTTLL+ I GL+ + G I+ G I
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG---RDITRLPPQK 75
Query: 166 K-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
+ G + Q A+F LT+ + + + GM + ++ + ++ LP ER KY
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER--KYPG 133
Query: 223 -LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ 280
LSGGQ++R++ A+ P L++LDEP +D VR+ + ++ Q+ G T IM T
Sbjct: 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
Query: 281 YIEEA-NDASEVAFLYKGRI 299
EEA + A + + G I
Sbjct: 194 DQEEALSMADRIVVMNHGVI 213
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 79.3 bits (196), Expect = 4e-17
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
+ ++ S + E + G + AGKTTLL+ + GL GE++ G P ++
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY-WQGEPIQNVRESY 73
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG--MDESIW----LFQMRKYSHVLKLPNLE 217
+ Y+ + + ELT E L+F+ +G +IW + +
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL------- 126
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
PV LS GQ+RR++ L L ILDEP +D + L+ +G V++
Sbjct: 127 -PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185
Query: 278 TT 279
TT
Sbjct: 186 TT 187
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 79.5 bits (197), Expect = 5e-17
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
L P VL N S +K E ++G + +GK++LL A+ L +S G I + G +
Sbjct: 14 PNLPP---VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK 70
Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN 215
I S++ +PQ+ +F TI+ L+ FG DE +W L ++ V LP
Sbjct: 71 IGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYS--DEELWQALERVGLKEFVESLPG 127
Query: 216 -LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFV 269
L+ V + LS GQ++ L A+L K ++++LDE VDP + ++ F
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF- 186
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
K TV+ ++ D+ + L KGR++ DSP
Sbjct: 187 -KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 79.2 bits (195), Expect = 1e-16
Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--KTA 163
L+ SL + + E L+GA+ AGKTTLL + G + G I V G + + K
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTAKIM 78
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL-ERPVK 221
V +P+ +F +T++E L G D+ FQ R V +L P L ER ++
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ----FQER-IKWVYELFPRLHERRIQ 133
Query: 222 ---YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
+SGG+++ L+ A++ +P+L++LDEP +G+ P++ ++++D ++ +G T+ +
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 279 TQYIEEANDASEVA----FLYKGRIIAQDSPD 306
Q AN A ++A L G ++ +D+ D
Sbjct: 194 EQ---NANQALKLADRGYVLENGHVVLEDTGD 222
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 80.9 bits (200), Expect = 1e-16
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 40/217 (18%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VLN+ SL + + LLG S +GKTTLL+ I GL++ + G I G S H
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLH-ARDR 74
Query: 166 KVGYMPQELAMFGELTIKETLNFFGM----------IYGMDESIW-LFQMRKYSHVLKLP 214
KVG++ Q A+F +T+ + + F G+ + + L +M + +H+
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAF-GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA--- 130
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQ------ 266
+R LSGGQK+R++ A+ +PQ+++LDEP +D VRK R W L Q
Sbjct: 131 --DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELK 187
Query: 267 ---VFVGK---------GRTVIMTTQYIEEANDASEV 291
VFV R V+M+ IE+A +V
Sbjct: 188 FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 78.6 bits (194), Expect = 2e-16
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 19/217 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L + +L ++ E V+LG S GKTTLL I G G I L G P G+
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVE----GPGA 70
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLE----RPV 220
+ G + Q + +++ + F + G+++ Q + +H +LK LE R +
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM----QRLEIAHQMLKKVGLEGAEKRYI 126
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
LSGGQ++R+ A+ PQL++LDEP +D R++M LL+++ G+ V++ T
Sbjct: 127 WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186
Query: 280 QYIEEAN-DASEVAFLY--KGRIIAQDSPDGFKSKYS 313
IEEA A+E+ L GR++ + + F ++
Sbjct: 187 HDIEEAVFMATELVLLSPGPGRVVERLPLN-FARRFV 222
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 79.8 bits (197), Expect = 2e-16
Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK-VGYMPQELAMFGEL 180
LLG S GKTTLL+ + G + G I +L G + + + + + Q A+F +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDG--EDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIA 236
T++E + F + + + ++ + L+L LE R LSGGQ++R++ A
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLE---ALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASE-VAFL 294
++ KP++++LDEP +D +R +M L+ + G T + T EEA S+ +A +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 295 YKGRIIAQDSPDGFKSKYSMPK 316
KG+I +P + Y P
Sbjct: 175 RKGKIAQIGTP---EEIYEEPA 193
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 80.4 bits (199), Expect = 2e-16
Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 39/223 (17%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PAS 157
V++N L + EF LLG S GKTT+L+ I G + G I +L G PA
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPAE 84
Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------- 210
H V + Q A+F +T+ E + FG+ +M+K
Sbjct: 85 NRH------VNTVFQSYALFPHMTVFENVA-FGL-----------RMQKTPAAEITPRVM 126
Query: 211 --LKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
L++ LE R LSGGQ++R++ A+++KP++++LDE +D +RK+M +
Sbjct: 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186
Query: 265 LQVFVGK-GRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSP 305
L+ K G T + T EEA S+ + + GRI +P
Sbjct: 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 78.5 bits (194), Expect = 2e-16
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 26/217 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAG 164
+L + S V E + ++G + AGKTTLL + G S G++ +LG
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMR-------KYSHVLKLPNL 216
++G + EL + ++ G SI ++Q +L+L
Sbjct: 106 KRIGLVSSELHE----RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161
Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK- 271
+RP LS G++RR+ A++ P+L+ILDEP G+D + R++ LL
Sbjct: 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ---LLNRLEELA 218
Query: 272 ----GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQD 303
++ T + EE + L +G ++AQ
Sbjct: 219 ASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 78.3 bits (193), Expect = 2e-16
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH------PASIYHKTAGSKVGYMP 171
E VLLG S AGK++LL+ + L+ G + + G H P+ + VG +
Sbjct: 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88
Query: 172 QELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKR 229
Q+ ++ LT++E L + G+ + L + K L+L +R +LSGGQ++
Sbjct: 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQ 148
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A 288
R++ A++ +PQ+++ DEP +DP + ++ +++ G T ++ T +E A A
Sbjct: 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA 208
Query: 289 SEVAFLYKGRIIAQDSPDGF 308
S V ++ G I+ Q F
Sbjct: 209 SRVVYMENGHIVEQGDASCF 228
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 78.0 bits (193), Expect = 2e-16
Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 18/205 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L + S + + E ++G + AGK+TLLK I G+ + G++ + G A + AG
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAG- 99
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKLPNLERPVKY 222
ELT +E + G+I G+ ++ + ++ + +++PVK
Sbjct: 100 ----------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF--IDQPVKT 147
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
S G RL+F++A +P +++LDE D +++ + L V K +T+++ + +
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207
Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
+ +L G+I + SP+
Sbjct: 208 GAIKQYCDRAIWLEHGQIRMEGSPE 232
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 79.5 bits (196), Expect = 3e-16
Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 27/215 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---YHKT 162
+++ SL + + E F LLGAS GK+TLL+ + G + + G+I +L G S Y +
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVPPYQR- 91
Query: 163 AGSKVGYMPQELAMFGELTIKETLNF--------FGMIYG-MDESIWLFQMRKYSHVLKL 213
+ M Q A+F +T+++ + F I ++E + L M++++
Sbjct: 92 ---PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA----- 143
Query: 214 PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKG 272
+R LSGGQ++R++ ++ +P+L++LDEP +D +R RM +++ + G
Sbjct: 144 ---KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200
Query: 273 RTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
T +M T EEA A +A + +G+ + P+
Sbjct: 201 VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE 235
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 76.8 bits (190), Expect = 6e-16
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 40/230 (17%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
+N+ SL V+ E L+G + AGKTTL I G S G + G G P H
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP---H 74
Query: 161 KTAGSKVGYMPQELAMFGELTIKE--------------TLNFFGMIYGMDESIWLFQMRK 206
+ A + Q +F LT+ E L E+ +
Sbjct: 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA-----RER 129
Query: 207 YSHVLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
+L+ L +RP LS GQ+RRL A+ +P+L++LDEP G++P + +
Sbjct: 130 ARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 263 DLL-QVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
+L+ ++ G T+++ IE A + L G +IA+ +P+
Sbjct: 190 ELIRELRDRGGVTILL----IEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 77.6 bits (191), Expect = 6e-16
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 22/214 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
L+N S ++ F L+G + +GK+TL++ L S G I + G YH T +
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG------YHITPETG 76
Query: 166 ---------KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP 214
KV + Q E +F E T+ + + F +G E + K+ + L
Sbjct: 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLS 135
Query: 215 N--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+ + LSGGQ RR++ + ++P+++ LDEP G+DP RK M L + + G
Sbjct: 136 EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG 195
Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
TVI+ T +++ + A +V L G++I SP
Sbjct: 196 HTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 75.6 bits (186), Expect = 7e-16
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
+ + S + E + G + +GKTTLL+ + GL G + +L G P +
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSIA 72
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQM--RKYSHVLKLPNLERPV 220
+ Y+ + L++ E L F+ + DE + L ++ + RPV
Sbjct: 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHS-DEQVEEALARVGLNGFED--------RPV 123
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LS GQ+RR++ +L L ILDEP +D R + + +G V++TT
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 75.3 bits (186), Expect = 1e-15
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+ + S + E VL G + +GKTTLL+ I GL + G I L G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPD--VA 72
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYG-----MDESIWLFQMRKYSHVLKLPNLERP 219
Y+ AM LT+ E L F+ G + ++ + + + P
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---APL-----AHLP 124
Query: 220 VKYLSGGQKRRLSFT-IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
YLS GQKRR++ + + ++P + ILDEP +D +L++ + +G VI
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
Query: 279 T 279
T
Sbjct: 184 T 184
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 76.5 bits (188), Expect = 1e-15
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L + S V L+G + +GK+TL KA++G ++ G+I +LG +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG---QPTRQALQKNL 79
Query: 167 VGYMPQ-ELAMFGELTIKETLNFFGMIYG---------------MDESIWLFQMRKYSHV 210
V Y+PQ E + + E + G YG + ++ M ++ H
Sbjct: 80 VAYVPQSEEVDWSFPVLVEDVVMMGR-YGHMGWLRRAKKRDRQIVTAALARVDMVEFRH- 137
Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
R + LSGGQK+R+ AI + Q+I+LDEP GVD R+ LL+
Sbjct: 138 -------RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
+G+T++++T + + + + KG ++A
Sbjct: 191 EGKTMLVSTHNLGSVTEFCDYTVMVKGTVLA 221
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 76.4 bits (188), Expect = 1e-15
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
LNN + + R ++G + AGK+TL + G+ + G + + G +
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 166 KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
VG + Q + +F T+++ + F + G+DE ++ H+L L L +R +
Sbjct: 79 FVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHH 137
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQY 281
LSGG+K+R++ I +PQ+++LDEP G+DP K + D L G TVI +T
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 282 IE-EANDASEVAFLYKGRIIAQDSPD 306
++ A + + KGRI+A + +
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVE 223
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 75.6 bits (186), Expect = 1e-15
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 18/221 (8%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+L+N SL +K E ++G S +GK+TL K I G + V G A
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPNL------E 217
+VG + QE +F +I++ + M+ I ++ + + +LP E
Sbjct: 76 RQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGR 273
+ LSGGQ++R++ A++H P+++I DE +D + + M D+ GR
Sbjct: 135 QGAG-LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-----AGR 188
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSM 314
TVI+ + +A + + KGRI+ Q S D ++ +
Sbjct: 189 TVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 78.8 bits (195), Expect = 1e-15
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG------HPASIY 159
L+N SL ++ E ++G +GK+TLLK ++GL ++G + +L G PA +
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-LLDGVDIRQIDPADLR 538
Query: 160 HKTAGSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWL---------FQMRKYSH 209
+GY+PQ+ +F G T+++ + G Y DE I F +R++
Sbjct: 539 RN-----IGYVPQDPRLFYG--TLRDNIAL-GAPYADDEEILRAAELAGVTEF-VRRHPD 589
Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
L + ER LSGGQ++ ++ A+L P +++LDEP +D +R D L+ ++
Sbjct: 590 GLDMQIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
G+T+++ T + + + GRI+A D
Sbjct: 649 A-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 75.9 bits (187), Expect = 2e-15
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 15/152 (9%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VL++ SL +K + LLG + AGK+TL++ ++GL +G I +
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRN 64
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
++GY+PQ+L + + T+ T+N F + + + K L ++ P++
Sbjct: 65 GKLRIGYVPQKLYL--DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL--IDAPMQK 120
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD 254
LSGG+ +R+ A+L++PQL++LDEP GVD
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 77.7 bits (192), Expect = 3e-15
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN--VVLNNCSLVVKRREFFVLLG 124
E + E+ + + ++ AD G E L+ + +L+ + V+ E ++ G
Sbjct: 367 EAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITG 426
Query: 125 ASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184
S AGKT+LL+A+ GL G I PA S + ++PQ + T++E
Sbjct: 427 ESGAGKTSLLRALAGLWPWGSGRI----SMPA-------DSALLFLPQR-PYLPQGTLRE 474
Query: 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV----------KYLSGGQKRRLSFT 234
L Y F + VL L + LSGG+++RL+F
Sbjct: 475 AL-----CYPNAAPD--FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527
Query: 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ--------VFVGKGRTVI 276
+LHKP+ + LDE +D R++ LL+ + VG T+
Sbjct: 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 77.3 bits (191), Expect = 3e-15
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV---------VLNNCS 111
+ K E+ E + EE +EGK GK K L+ NV +L + S
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLS 342
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
+ R + ++G + AGK+TLLK + G LG ++ K+GY
Sbjct: 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAG----------ELGPLSGTV-KVGETVKIGYFD 391
Query: 172 QELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----NLERPVKYLSGG 226
Q + + T+ E L + + +++ + + E+PV LSGG
Sbjct: 392 QHRDELDPDKTVLEEL--------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGG 443
Query: 227 QKRRLSFTIAILHKPQLIILDEP 249
+K RL +L P L++LDEP
Sbjct: 444 EKARLLLAKLLLQPPNLLLLDEP 466
Score = 71.5 bits (176), Expect = 2e-13
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 43/176 (24%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
+L N SL + E L+G + AGK+TLLK + G GE+ + G
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT-----------RPKG 65
Query: 165 SKVGYMPQELAMFGELTIKETL----------------------NFFGMIYGMDESIWLF 202
+VGY+ QE + E T+ + + + + E++ L
Sbjct: 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL-LE 124
Query: 203 QMRKYS---------HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
++ ++ L P+ +RPV LSGG +RR++ A+L +P L++LDEP
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 75.2 bits (185), Expect = 4e-15
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTAG 164
L SL + LLG + AGK+TLL + G+ +G + V+G + + K
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE--KWVR 78
Query: 165 SKVGYMPQ------------ELAMFG----ELTIKETLNFFGMIYGMDESIWLFQMRKYS 208
SKVG + Q + FG L E ++E++ +M +
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER------RVEEALKAVRMWDFR 132
Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
+P +LS GQK+R++ + P +I+LDEP +DP ++ + ++L
Sbjct: 133 D--------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
+G+TVI+ T ++ A + A +V L +GR++A+
Sbjct: 185 HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 76.3 bits (188), Expect = 4e-15
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 15/207 (7%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIW----VLGGHPASIYHKTAGSKVGYMPQELAMF 177
+ G S +GKTTL++ I GL +GEI L I+ ++GY+ QE +F
Sbjct: 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLF 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL----PNLERPVKYLSGGQKRRLSF 233
L+++ L YGM + + + V++L L R LSGG+K+R++
Sbjct: 88 PHLSVRGNLR-----YGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAI 142
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT-VIMTTQYIEE-ANDASEV 291
A+L P+L+++DEP +D + + L+ + ++ + ++E A V
Sbjct: 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV 202
Query: 292 AFLYKGRIIAQDSPDGFKSKYSMPKLS 318
L GR+ A + +P L+
Sbjct: 203 VVLEDGRVAAAGPIAEVWASPDLPWLA 229
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 74.2 bits (183), Expect = 4e-15
Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
P VL + S + + ++G S +GK+T+L+ + ++S G I + G +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH----VLKLPNL 216
+ +G +PQ+ +F + TI + + G DE + + K + +++ P+
Sbjct: 71 DSLRRAIGVVPQDTVLFND-TIGYNIRY-GRPDATDEEV--IEAAKAAQIHDKIMRFPDG 126
Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ER +K LSGG+K+R++ AIL P +++LDE +D + + L+ V
Sbjct: 127 YDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VS 184
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
KGRT I+ + +A ++ L GRI+ + + +
Sbjct: 185 KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHE 220
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 74.4 bits (183), Expect = 4e-15
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH---PASIY 159
VL+N L + + E V++G S +GK+TLL+ I L+ I+ G++ V G P
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY--GMDESIWLFQMRKYSHVL--KLPN 215
+ G + Q+ +F LT E + FG + G + + K + L K+
Sbjct: 73 RLIR-QEAGMVFQQFYLFPHLTALENV-MFGPLRVRGASKE----EAEKQARELLAKVGL 126
Query: 216 LERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
ER Y LSGGQ++R++ A+ KP+L++ DEP +DP +R + ++Q +G
Sbjct: 127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319
T+++ T I A AS + F+ KGRI P +L +
Sbjct: 187 MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE 234
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 73.2 bits (180), Expect = 4e-15
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E + G + GKTTLL+ + GL GE+ G + + Y+ +
Sbjct: 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 178 GELTIKETLNFFGMIYGM-DESIW--LFQM--RKYSHVLKLPNLERPVKYLSGGQKRRLS 232
EL+ E L+F+ I+G +I L + + P LS GQ+RRL+
Sbjct: 86 PELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED--------LPAAQLSAGQQRRLA 137
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
L + L ILDEP +D + LL+ + +G V++TT
Sbjct: 138 LARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 75.1 bits (185), Expect = 4e-15
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 46/235 (19%)
Query: 96 EKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155
E E + L++ +L VK+ EF V+LG + +GK+T+ K + L S+G+++V G
Sbjct: 15 ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74
Query: 156 ASIYH-----KTAG----------------SKVGYMPQELAMFGE---LTIKETLNFFGM 191
+ + AG V + P+ L + E + E+L GM
Sbjct: 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM 134
Query: 192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251
++ R+++ P+L LSGGQK+R++ + +P+ II DEP
Sbjct: 135 ----------YEYRRHA-----PHL------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 252 GVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
+DP R+ + + ++ K G T+I+ T Y+EEA +A + + G+++ + +P
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 76.8 bits (190), Expect = 5e-15
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 106 VLNNCSLVVKRRE---FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ + S V+ E L+GA G+T L +A+ G + S GEI L G P I
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGA---GRTELARALFGARPASSGEIL-LDGKPVRIRSPR 329
Query: 163 AGSK--VGYMP---QELAMFGELTIKETLNF-----FGMIYGMDESIWLF---QMRKYSH 209
K + Y+P + + +++I E + F +D + +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR 389
Query: 210 VLKLPNLERPVKYLSGG--QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+ K P+ E+P+ LSGG QK + + P+++ILDEP G+D + ++ L++
Sbjct: 390 I-KTPSPEQPIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
Query: 268 FVGKGRTVIMTTQYIEEA 285
+G+ ++M + + E
Sbjct: 447 LAAEGKAILMISSELPEL 464
Score = 74.5 bits (184), Expect = 3e-14
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 21/214 (9%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIY 159
L+ SL V+ E LLG + AGK+TL+K + G+ GEI + G +S
Sbjct: 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78
Query: 160 H-KTAGSKVGYMPQELAMFGELTIKETLNFF-----GMIYGMDESIWLFQMRKYS----H 209
AG + + QEL++ L++ E N F +G+ I MR+ +
Sbjct: 79 DALAAG--IATVHQELSLVPNLSVAE--NIFLGREPTRRFGL---IDRKAMRRRARELLA 131
Query: 210 VLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
L L + + V LS Q++ + A+ +++ILDEP + +R++DL++
Sbjct: 132 RLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
+G +I + ++E + A + L GR++
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 72.5 bits (179), Expect = 6e-15
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
+ + S V+ E + G G+T L +A+ GL+ + GEI L G P +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAI 73
Query: 164 GSKVGYMP---QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
+ + Y+P + + +L++ E N L +L
Sbjct: 74 RAGIAYVPEDRKREGLVLDLSVAE--NIA-----------------------LSSL---- 104
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
LSGG ++++ + P+++ILDEP GVD + ++ L++ G+ V++ +
Sbjct: 105 --LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162
Query: 281 YIEEA-NDASEVAFLYKGRI 299
++E + +Y+GRI
Sbjct: 163 ELDELLGLCDRILVMYEGRI 182
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 72.2 bits (178), Expect = 1e-14
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 22/212 (10%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-IYHKT 162
L+N SL ++ E ++G +GK+TLLK + GL + G + +L G +
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPAD 75
Query: 163 AGSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWLFQMR--KYSHVLKL----PN 215
+GY+PQ++ +F G T+++ + G DE I +R + + V PN
Sbjct: 76 LRRNIGYVPQDVTLFYG--TLRDNITL-GAPLADDERI----LRAAELAGVTDFVNKHPN 128
Query: 216 -LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L+ + + LSGGQ++ ++ A+L+ P +++LDEP +D +R+ + L+ +G
Sbjct: 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+T+I+ T + + + GRI+A
Sbjct: 189 -DKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 74.1 bits (182), Expect = 2e-14
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 22/222 (9%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--------LGGHPA 156
V LNN S ++ + + ++G S +GK+TL+ GL G I V H
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 157 SIYHKTAGSK--------VGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK 206
+ K V + Q E +F + TI++ + F + G+ +S +
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKF 158
Query: 207 YSHV--LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
Y + L LER LSGGQKRR++ + +P+++I DEP G+DP M L
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 265 LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
+ +TV + T +E + A EV + KG+I+ +P
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 75.1 bits (185), Expect = 2e-14
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
L S ++ E ++G S +GK+TL + IVG+ + G + + G A +
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG---ADLKQW 385
Query: 161 --KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL 216
+T G +GY+PQ++ +F T+ E + FG E I H +L+LP+
Sbjct: 386 DRETFGKHIGYLPQDVELF-PGTVAENIARFGENAD-PEKIIEAAKLAGVHELILRLPD- 442
Query: 217 ERPVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
Y LSGGQ++R++ A+ P+L++LDEP +D + + + ++
Sbjct: 443 ----GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 267 VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
+G TV++ T ++ L GRI
Sbjct: 499 ALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 71.9 bits (177), Expect = 2e-14
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 30/214 (14%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL + SL + E L+G S +GK+TL+ I ++ G I + G +
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYG-----MDESIWLFQMRKYSH--VLKLPNL-- 216
++G + Q++ +F + T+ E + YG +E + +H +++LP
Sbjct: 77 QIGLVSQDVFLFND-TVAENI-----AYGRPGATREEVEEAARA-ANAHEFIMELPEGYD 129
Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVF 268
ER VK LSGGQ++R++ A+L P ++ILDE +D LV+ + L+
Sbjct: 130 TVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--- 185
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
K RT + + +A + L G+I+ +
Sbjct: 186 --KNRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 73.4 bits (181), Expect = 2e-14
Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 20/218 (9%)
Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159
+ L++ SL + + E F ++G S AGK+TLL+ I L+ + G ++V G ++
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS 74
Query: 160 HK---TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKLPN 215
K+G + Q + T+ E + F + G+ ++ I ++ + +L+L
Sbjct: 75 EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI----KQRVAELLELVG 130
Query: 216 LE-----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L P + LSGGQK+R++ A+ + P++++ DE +DP + + +LL+
Sbjct: 131 LSDKADRYPAQ-LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 271 K-GRTVIMTT---QYIEEANDASEVAFLYKGRIIAQDS 304
+ G T+++ T + ++ VA L +GR++ + +
Sbjct: 190 ELGLTIVLITHEMEVVKRI--CDRVAVLDQGRLVEEGT 225
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 73.3 bits (180), Expect = 4e-14
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 21/255 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL+ L V+ L+G + AGKTTLL+AI G + G + V G ++ + A
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 166 KVGYMPQELAMFGELTIKETLNF-----FGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
+V +PQ+ ++ E +++ + E+ R +RPV
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
LSGG+++R+ A+ +++LDEP +D + R +L++ V G+T +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAA-- 195
Query: 281 YIEEANDAS----EVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF---YKITNDDGTSS- 332
I + + A+ E+ L GR+ A P + L F + D T +
Sbjct: 196 -IHDLDLAARYCDELVLLADGRVRAAGPP---ADVLTADTLRAAFDARTAVGTDPATGAP 251
Query: 333 --GPPAETSKAEEPE 345
P + + E
Sbjct: 252 TVTPLPDPDRTEAAA 266
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 71.0 bits (175), Expect = 5e-14
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 32/221 (14%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKT 162
LN+ SL V E V++G + AGKTT++ I G +G + G G P H+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---HQI 74
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYS------HVLKLP 214
A + +G Q+ +F LT+ E L + D+S++ LF VL+
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE---LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 215 NLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L R LS GQK+ L + ++ P+L++LDEP G+ ++ +LL+ +
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 271 KGRTVI-----MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+V+ M +++ A +V L++G ++A+ S D
Sbjct: 191 GKHSVVVVEHDM--EFVRSI--ADKVTVLHQGSVLAEGSLD 227
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 69.5 bits (171), Expect = 5e-14
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 44/177 (24%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
V+L + S +K + ++ G S GK++L +A+ GL G I
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-----------GMP 61
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
G + ++PQ T++E L IY D
Sbjct: 62 EGEDLLFLPQR-PYLPLGTLREQL-----IYPWD------------------------DV 91
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGG+++RL+F +LHKP+ + LDE +D R++ LL+ G TVI
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVG 145
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 70.4 bits (173), Expect = 6e-14
Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTA 163
VL + +L + E +L G S +GKTTLL I GL+++ +G + VLG + AS
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 164 GSK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLERPVK 221
+ +GY+ Q + G LT ++ + M + ++ + R+ + +L+ L +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQ---MALELQPNLSYQEARERARAMLEAVGLGDHLD 136
Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVI 276
Y LSGGQK+R++ A++H+P+L++ DEP +D + + +L+Q +G T++
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTIL 196
Query: 277 MTT 279
+ T
Sbjct: 197 IVT 199
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 71.4 bits (175), Expect = 6e-14
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
LSGGQK+R++ + +P++IILDE +DP ++++ L+ ++ TVI T
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202
Query: 281 YIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDV----FYKITN 326
I+EAN A +V L G+++AQ SP SK M K + YK+ N
Sbjct: 203 DIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKN 252
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 72.0 bits (177), Expect = 8e-14
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKTAGSKVGYMPQELAM 176
L G S +GKT+L+ I GL +G I L G I+ ++GY+ Q+ +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 177 FGELTIKETLNFFGMIYGMDESI-WLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTI 235
F T++ L + GM M L + H+L P LSGG+K+R++
Sbjct: 88 FPHYTVRGNLRY-GMWKSMRAQFDQLVALLGIEHLLD----RYPGT-LSGGEKQRVAIGR 141
Query: 236 AILHKPQLIILDEPCVGVDPLVRKR 260
A+L P+L+++DEP +D L RKR
Sbjct: 142 ALLTAPELLLMDEPLASLD-LPRKR 165
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 68.6 bits (169), Expect = 9e-14
Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 52/203 (25%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L+ SL V+R E LLG + AGK+TL+K + GL GEI V G S
Sbjct: 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSF--- 66
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
+ ++ M+Y Q
Sbjct: 67 ------------------ASPRDARRAGIAMVY---------Q----------------- 82
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
LS G+++ + A+ +L+ILDEP + P +R++ +++ +G VI +
Sbjct: 83 --LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Query: 281 YIEEAND-ASEVAFLYKGRIIAQ 302
++E + A V L GR++
Sbjct: 141 RLDEVFEIADRVTVLRDGRVVGT 163
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 71.3 bits (174), Expect = 9e-14
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI----WVLGGHPASIYHKT 162
L + L VK+ + L+G + +GK+TLL+ + GL ++G++ V+ K
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 163 AGSKVGYMPQ--ELAMFGELTIKETL---NFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
KVG + Q E +F E +K+ FG+ E I ++ L E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVG--LADEFWE 139
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
+ LSGGQ RR++ + +P++++LDEP G+DP R M L + G+TV++
Sbjct: 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPA 336
T +++ D A V L KG II+ +P SDVF ++ G P
Sbjct: 200 VTHLMDDVADYADYVYLLEKGHIISCGTP------------SDVFQEVDFLKAHELGVPK 247
Query: 337 ETSKAEE 343
T A++
Sbjct: 248 ATHFADQ 254
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 69.9 bits (172), Expect = 1e-13
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 30/223 (13%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+P +L SL + + L+G+S GK+T++ + + + GEI +L G +
Sbjct: 13 RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLN 71
Query: 161 -KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK------YSHVLKL 213
+ S++G + QE +F + TI E + YG ++ + ++ L
Sbjct: 72 LRWLRSQIGLVSQEPVLF-DGTIAENI-----RYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 214 PNLERPVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
P+ Y LSGGQK+R++ A+L P++++LDE +D K + +
Sbjct: 126 PD-----GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
L + KGRT I+ + +A +A L G+++ Q + D
Sbjct: 181 ALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHD 222
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.1 bits (169), Expect = 1e-13
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 19/202 (9%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTAGSKVG 168
L + E ++G S +GK+TLL I G + G + ++ G A+ A V
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAA---PPADRPVS 73
Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-QMRKYSHV----LKLPNLE-RPVKY 222
+ QE +F LT+++ + G+ + L + R+ V + L LE R
Sbjct: 74 MLFQENNLFAHLTVEQNVGL-----GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE 128
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQY 281
LSGG+++R++ ++ +++LDEP +DP +R M DL L + TV+M T
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 282 IEEAND-ASEVAFLYKGRIIAQ 302
E+A A V FL GRI AQ
Sbjct: 189 PEDAKRLAQRVVFLDNGRIAAQ 210
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 71.8 bits (176), Expect = 2e-13
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG-------HPASIY 159
++N SL VK E F ++G S AGKTTL K I G+ + GE+ V G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWL-----FQMRKYSHVLKLP 214
A +G + QE ++ T+ + L E+I L K LK+
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLT---------EAIGLELPDELARMKAVITLKMV 410
Query: 215 N---------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR 258
L++ LS G++ R++ ++ +P+++ILDEP +DP+ +
Sbjct: 411 GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITK 463
Score = 47.1 bits (112), Expect = 1e-05
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 54/262 (20%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEI-----------WV- 150
VL N S ++ E +LG S AGK+ L+ + G+ + G I +V
Sbjct: 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVE 73
Query: 151 -----------LGG----------HPASIYHKTAGSKVGYMPQE-LAMFGELT----IKE 184
GG + + + ++ M Q A++G+ T + E
Sbjct: 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 185 TLNFFGMIYGMDESIW----LFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
L G Y E++ L +M + SH ++ ++ R LSGG+K+R+ + +
Sbjct: 134 ALEEIG--YEGKEAVGRAVDLIEMVQLSH--RITHIARD---LSGGEKQRVVLARQLAKE 186
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEANDASEVA-FLYKGR 298
P L + DEP +DP K + + L+ V G ++++T+ + E D S+ A +L G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246
Query: 299 IIAQDSPDGFKSKYSMPKLSDV 320
I + +PD + + M +S+V
Sbjct: 247 IKEEGTPDEVVAVF-MEGVSEV 267
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 68.9 bits (169), Expect = 4e-13
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 23/217 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAG 164
LN+ S V E VL+G + AGKTTL+ I G +GE+ G + H+ A
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LF------QMRKYSHVLKLPNL 216
+ +G Q+ +F LT++E L + D+S++ LF + R+ +L L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLE---LALNRDKSVFASLFARLRAEERRRIDELLATIGL 137
Query: 217 E----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
R LS GQK+ L + + P+L++LDEP G+ ++ +LL+ GK
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK- 196
Query: 273 RTVIMT---TQYIEEANDASEVAFLYKGRIIAQDSPD 306
++++ ++ E A +V L++G ++A+ S D
Sbjct: 197 HSILVVEHDMGFVREI--ADKVTVLHEGSVLAEGSLD 231
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 70.1 bits (172), Expect = 4e-13
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 39/224 (17%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYH 160
SN V++N +L +K+ LLG S GKTT+L+ + GL+ ++G+I++ G SI
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS---------HVL 211
+ + + Q A+F +++ E + YG+ +M L
Sbjct: 78 R----DICMVFQSYALFPHMSLGENVG-----YGL-------KMLGVPKEERKQRVKEAL 121
Query: 212 KLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD---- 263
+L +L +R V +SGGQ++R++ A++ KP++++ DEP +D +R+ M +
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDAS-EVAFLYKGRIIAQDSPD 306
L Q F T + T EA S V + KG+I+ SP
Sbjct: 182 LQQQF---NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 67.5 bits (165), Expect = 7e-13
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 9/200 (4%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
+L + S+ + + ++G S AGK+TL+K I L + ++G I + G +I
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKY 222
K+G + Q+ +F E T+K+ + + M+ G + Y ++ L R VK
Sbjct: 77 RKIGMVFQQPHLF-EGTVKDNIEYGPMLKGEKNVDVEY----YLSIVGLNKEYATRDVKN 131
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQY 281
LSGG+ +R+S + + P++++LDEP +DP + + +L+ K TVI T
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
Query: 282 IEEANDASE-VAFLYKGRII 300
+E+A + AFL KG ++
Sbjct: 192 MEQAKRIGDYTAFLNKGILV 211
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 67.7 bits (166), Expect = 8e-13
Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-------- 154
++ L + +L + E VLLG S AGK++LL+ + L+ G + + G H
Sbjct: 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73
Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKL 213
+I + VG + Q+ ++ LT+++ L + G+ + L + K L+L
Sbjct: 74 DKAI--RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 214 PNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+R +LSGGQ++R++ A++ +PQ+++ DEP +DP + ++ +++ G
Sbjct: 132 KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191
Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
T ++ T +E A AS V ++ G I+ Q G S ++ P+
Sbjct: 192 ITQVIVTHEVEVARKTASRVVYMENGHIVEQ----GDASCFTQPQ 232
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 67.1 bits (164), Expect = 9e-13
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 22/212 (10%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY- 159
+P +VL + S + E L+G S +GK+T++ + G++ +L G P S Y
Sbjct: 24 RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNF------FGMI------YGMDESIWLFQMRKY 207
HK SKV + QE +F ++++ + + F + I
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD 141
Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+ V + + LSGGQK+R++ A++ PQ++ILDE +D +++ L
Sbjct: 142 TEVGEKGSQ------LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
+ + RTV++ + A ++ L GRI
Sbjct: 196 WP-ERRTVLVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 69.9 bits (172), Expect = 9e-13
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 33/215 (15%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-G 164
VL SL +K E LLG + GK+TLL+ + + QGEI L G P + Y + A
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALR 413
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE------- 217
+ + Q + +F T+++ L DE VL+ LE
Sbjct: 414 QAISVVSQRVHLFSA-TLRDNL-LLAAPNASDE--------ALIEVLQQVGLEKLLEDDK 463
Query: 218 ----------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
R LSGG++RRL A+LH L++LDEP G+D +++ +LL
Sbjct: 464 GLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520
Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+ +TV+M T + + + G+II Q
Sbjct: 521 H-AQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 66.8 bits (163), Expect = 1e-12
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 23/183 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-G 164
+LNN SL V+ EF + G S GK+TLLK + L + + G + + G S A
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYR 76
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER------ 218
+V Y Q A+FG+ T+++ L F W + R+ L L R
Sbjct: 77 QQVSYCAQTPALFGD-TVEDNLIF----------PWQIRNRRPDRAAALDLLARFALPDS 125
Query: 219 ----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
+ LSGG+K+R++ + P++++LDE +D ++ + +++ +V +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 275 VIM 277
++
Sbjct: 186 AVL 188
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 66.1 bits (162), Expect = 1e-12
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 33/202 (16%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNIS-QGEIWVLGGHPASIYHKTA 163
L + S VVK E ++LG +G +TLLKA+ N+S +G+I G P + +
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFAEKY 81
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
++ Y+ +E F LT++ETL+F L+ V+ +
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDF---------------------ALRCKG-NEFVRGI 119
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
SGG+++R+S A++ + ++ D G+D + ++ +T + Y
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY-- 177
Query: 284 EANDA-----SEVAFLYKGRII 300
+A+D +V LY+GR I
Sbjct: 178 QASDEIYDLFDKVLVLYEGRQI 199
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 67.4 bits (165), Expect = 1e-12
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 60/239 (25%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG- 164
VL SL + ++G+S +GK+T L+ I L+ S G I V G + G
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV-NGEEIRLKRDKDGQ 79
Query: 165 -------------SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
+++G + Q ++ +T+ E + + HVL
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-----------------IEAPVHVL 122
Query: 212 KLPN---LERPVKYL----------------SGGQKRRLSFTIAILHKPQLIILDEPCVG 252
+ +ER KYL SGGQ++R++ A+ +P++++ DEP
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 253 VDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+DP V K M DL + +GRT+++ T + A D +S V FL++G+I + P+
Sbjct: 183 LDPELVGEVLKVMQDLAE----EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPE 237
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 67.4 bits (165), Expect = 2e-12
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-- 162
L + ++ E LLG + AGK+TL G+ + GE+ ++ G P K+
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLL 74
Query: 163 -AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-- 217
VG + Q + +F T++E + F + G+ + ++ LK +E
Sbjct: 75 EVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEE---VEKRVKEALKAVGMEGF 130
Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
+P +LSGGQK+R++ + KP++I+LDEP G+DP+ ++ LL +G T+
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190
Query: 276 IMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
I++T ++ A +V + G+II + +P
Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 66.8 bits (164), Expect = 2e-12
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 17/209 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKT- 162
+L +L VK E ++G + +GK+TL I+G +++GEI + G I +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDG--EDILELSP 75
Query: 163 ---AGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLF--QMRKYSHVLKLPN- 215
A + + Q +T + L G + F ++++ + +L L
Sbjct: 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 216 -LERPV-KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
LER V + SGG+K+R +L +P+L ILDEP G+D K + + + +GR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195
Query: 274 TVIMTTQYIEEAN--DASEVAFLYKGRII 300
V++ T Y + +V LY GRI+
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIV 224
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 66.9 bits (163), Expect = 2e-12
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 27/234 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL SL + ++G+S +GK+T L+ I L+ S+G I V G + K
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 166 KVGYMPQELAMFGELT-IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVK 221
KV Q + LT + + N + + ++ M VL L ER VK
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-----MEAPIQVLGLSKQEARERAVK 134
Query: 222 Y-----------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
Y LSGGQ++R+S A+ +P++++ DEP +DP + + +
Sbjct: 135 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194
Query: 265 LQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKL 317
+Q +G+T+++ T + A + +S V FL++G+I + +P+ P+L
Sbjct: 195 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRL 248
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 66.5 bits (163), Expect = 2e-12
Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 12/209 (5%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
L + SL V + E F ++G S AGK+TL++ I GL+ + G + V G + K
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
A ++G + Q + T+ E + I G+ ++ + +L+L LE +
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA---EIEERVLELLELVGLEDKAD 135
Query: 221 KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
Y LSGGQK+R+ A+ + P++++ DE +DP + + LL+ + G T++
Sbjct: 136 AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIV 195
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDS 304
+ T +E VA + KG ++ + +
Sbjct: 196 LITHEMEVVKRICDRVAVMEKGEVVEEGT 224
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 67.7 bits (165), Expect = 2e-12
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 34/233 (14%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYH 160
+N VL++ SL ++ E L+G S GKTTLL+AI G + G I + + H
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD---RDLTH 73
Query: 161 KTAGSK-VGYMPQELAMFGELTIKETLNFFGMIYGMD---------ESIWLFQMRKYSHV 210
+ + + Q A+F L +++ + F M +++ L + +
Sbjct: 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA- 132
Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
LP LSGG ++R++ AI +P +++LDEP +D +R M + +
Sbjct: 133 -HLPA------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185
Query: 271 K--GRTVIMTTQYIEEANDASEVAFLYK-GRIIA--------QDSPDGFKSKY 312
+ T++ T ++A ++ A + K GR+ A DGF +++
Sbjct: 186 ELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEF 238
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 67.0 bits (164), Expect = 2e-12
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVL------------- 151
L+N S+ + + EF ++G + +GKTT ++ + L G I W+
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 152 GGHPASIYHKTAGSK----------VGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESI 199
+ KT K VG + Q E +F E TI++ + F + G+ +
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEE 140
Query: 200 WLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV 257
+ KY ++ L L+R LSGGQKRR++ + +P ++ DEP G+DP
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 258 RKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
K + ++ +G+T+I+ T ++ + ++ F G+II
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 66.4 bits (162), Expect = 3e-12
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-----GEIWVLGGHPAS 157
SN V+ L + + F L+G S GK+TLL+ L +++ GE+ + G +
Sbjct: 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG---RN 72
Query: 158 IYHKTAGS-----KVGYMPQELAMFGELTIKET----LNFFGMIYGMDESIWLFQMRKYS 208
IY +VG + Q F LTI + + G++ E L + +++
Sbjct: 73 IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE---LDERVEWA 129
Query: 209 HVLKLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
LK L VK LSGGQ++RL A+ KP+++++DEP +DP+ +
Sbjct: 130 --LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAK 187
Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
+ +LL + V++T + A + VAFLY G++I
Sbjct: 188 IEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 65.4 bits (159), Expect = 3e-12
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 25/185 (13%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH---PASIYHKT 162
+L S + L G++ AGKTTLLK I GL N +GEI Y K
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 163 ---AGSKVGYMPQELAMFGELTIKET----LNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
G + G P LT++E ++F G+ E LF +
Sbjct: 76 LCFVGHRSGINPY-------LTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------- 120
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
++ P LS GQKR+++ + K +L +LDEP V +D L + +Q KG V
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 276 IMTTQ 280
++T+
Sbjct: 181 LLTSH 185
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 63.6 bits (156), Expect = 3e-12
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 61/146 (41%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
++L + SL + + L+G + AGK+TLLK I G +G + +
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-----------GS 61
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
K+GY Q L
Sbjct: 62 TVKIGYFEQ--------------------------------------------------L 71
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEP 249
SGG+K RL+ +L P L++LDEP
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEP 97
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 65.6 bits (160), Expect = 4e-12
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 39/229 (17%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL+ + V E L+G S +GK+T+L+ ++ L+ I +G+I V G +YH +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG---EQLYHMPGRN 71
Query: 166 ----------------KVGYMPQELAMFGELTIKETLNFFGM-IYGM------DESIWLF 202
K+G + Q +F T+ + + + + GM ++ L
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL 131
Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VR 258
M + P + LSGGQ++R++ A+ +P++++ DE +DP V
Sbjct: 132 DMVGLADKAD----HMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 259 KRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+ L T+++ T + A + A V F KGRI+ Q PD
Sbjct: 187 NVIRRLAS---EHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 65.4 bits (160), Expect = 4e-12
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 18/184 (9%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK--VG 168
L V+R E +LG S AGK+TLL I G + G + + G + T S+ V
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPPSRRPVS 74
Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWL-----FQMRKYSHVLKLPN-LERPVKY 222
+ QE +F LT+ + + G++ + L ++ + + + + L R
Sbjct: 75 MLFQENNLFSHLTVAQNIGL-----GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ 129
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
LSGGQ++R++ ++ + +++LDEP +DP +R+ M L+ QV + T++M +
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 282 IEEA 285
+E+A
Sbjct: 190 LEDA 193
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 66.8 bits (164), Expect = 4e-12
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 22/149 (14%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKTAGSKVGYMPQELAM 176
+ G S AGKT+L+ AI GL +G I VL G I ++GY+ Q+ +
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKL----PNLERPVKYLSGGQKRRL 231
F ++ L YGM +S M ++ ++ L P L+R LSGG+K+R+
Sbjct: 88 FPHYKVRGNLR-----YGMAKS-----MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRV 137
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKR 260
+ A+L P+L+++DEP +D L RKR
Sbjct: 138 AIGRALLTAPELLLMDEPLASLD-LPRKR 165
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 65.4 bits (160), Expect = 6e-12
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG 164
+LN+ SL + + L+G + GK+TLLK L G + LG P S+ +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQLA 75
Query: 165 SKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
++ +PQ +T++E L+ +G + D + M + + + L
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ-TRINHLA-- 132
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
+R + LSGGQ++R + + +++LDEP +D + + L++ +G+TV+
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 277 MTTQYIEEANDASE----VAFLYKGRIIAQDSPD 306
+ + N AS + L G ++AQ +P+
Sbjct: 193 TV---LHDLNQASRYCDHLVVLANGHVMAQGTPE 223
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 65.5 bits (160), Expect = 6e-12
Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 10/211 (4%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKT 162
L+N ++ ++ EF L+G + +GK+TL++ + GL + G+I + G +
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LE 217
KVG + Q E +F E TI++ + F + G+ E ++++ +++ L +
Sbjct: 81 IRKKVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKD 139
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
+ LSGGQKRR++ + +P+++ILDEP G+DP R + + ++ + T+I
Sbjct: 140 KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199
Query: 277 MTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
+ + +E+ A A + + KG+ Q +P
Sbjct: 200 LVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 67.4 bits (165), Expect = 7e-12
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 38/213 (17%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEGKNT------EKEELKPSNVVLNNCSLVVKRRE 118
+ DE + +EK+ E KE E+ +N +KE+ V+LNN VK
Sbjct: 737 DLTDESDDVNDEKDME--KESGEDIFHWRNLTYEVKIKKEKR----VILNNVDGWVKPGT 790
Query: 119 FFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
L+GAS AGKTTLL + I+ G+ V G P + +GY+ Q+
Sbjct: 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLV-NGRPLD---SSFQRSIGYVQQQDL 846
Query: 176 MFGELTIKETLNFFG-------------MIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
T++E+L F M Y ++E I L +M Y+ + + P +
Sbjct: 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEY-VEEVIKLLEMESYADAV----VGVPGEG 901
Query: 223 LSGGQKRRLSFTIAILHKPQLII-LDEPCVGVD 254
L+ Q++RL+ + ++ KP+L++ LDEP G+D
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Score = 46.6 bits (111), Expect = 2e-05
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 36/229 (15%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-----GHPASIYH 160
+L ++K E V+LG +G +TLLK I N I V G G
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS--NTDGFHIGVEGVITYDGITPEEIK 133
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGM-------IYGMDESIWLFQMRKY------ 207
K V Y + F LT+ ETL+F G+ + +
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG 193
Query: 208 -SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-----LVR--K 259
SH V+ +SGG+++R+S A L ++ D G+D +R K
Sbjct: 194 LSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALK 253
Query: 260 RMWDLLQVFVGKGRTVIMTT-QYIEEANDA-SEVAFLYKGRIIAQDSPD 306
++L T ++ Q ++A + +V LY+G I D
Sbjct: 254 TSANILDT------TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 67.1 bits (164), Expect = 7e-12
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 85 EEEEADEGKNTEKEELKPSNV-------------VLNNCSLVVKRREFFVLLGASSAGKT 131
+ E ++ K TE L V +L++ SL +K ++G S +GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 132 TLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK-VGYMPQELAMFGELTIKETLNFFG 190
TL K +VG GEI +L G + + + Y+PQE +F +I E L G
Sbjct: 515 TLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENL-LLG 571
Query: 191 MIYGMD-ESIW----LFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIAILHK 240
+ + IW + +++ + +P L +SGGQK+R++ A+L
Sbjct: 572 AKENVSQDEIWAACEIAEIKD--DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
+++ILDE +D + K++ + L + + + +T+I + A + ++ L G+II
Sbjct: 630 SKVLILDESTSNLDTITEKKIVNNL-LNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687
Query: 301 AQDSPD 306
Q S D
Sbjct: 688 EQGSHD 693
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 64.4 bits (157), Expect = 8e-12
Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+LNN S ++ EF ++ G S GK+TLLK + L + + G + G +++ +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN--LER 218
+V Y Q +FG+ T+ + L F I D +I+L + +++ LP+ L +
Sbjct: 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFA----LPDTILTK 133
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIM 277
+ LSGG+K+R+S + P++++LDE +D + + +++ +V + V+
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLW 193
Query: 278 TTQYIEEANDASEV 291
T +E N A +V
Sbjct: 194 VTHDKDEINHADKV 207
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 63.4 bits (155), Expect = 8e-12
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 34/174 (19%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYHKTAG 164
LNN S VK L+G S AGKTTLL + G K GEI + G + ++
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS-- 80
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS 224
GY+ Q+ LT++E L F S L + LS
Sbjct: 81 --TGYVEQQDVHSPNLTVREALRF---------SALL-------------------RGLS 110
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
Q++RL+ + + KP ++ LDEP G+D + L+ G+ ++ T
Sbjct: 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 64.7 bits (158), Expect = 1e-11
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 26/219 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L+ SL ++ E +LG + AGK+TLLKA+ G + GE+ L G P + + +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEELA 74
Query: 166 KV-GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPV 220
+ +PQ ++ T++E + G I R + L +L R
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133
Query: 221 KYLSGGQKRRLSF--TIAILHKPQL----IILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
+ LSGG+++R+ +A L P + LDEP +D + L + +G
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGA 193
Query: 275 VI-------MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
V+ + QY A + L++GR+IA SP
Sbjct: 194 VLAVLHDLNLAAQY------ADRIVLLHQGRVIASGSPQ 226
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 65.0 bits (159), Expect = 1e-11
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIW----VLGGHPASIYHKTAGSKVGYMPQ--ELA 175
++G + +GK+TLL+ + GL + G + V+ + K KVG + Q E
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSF 233
+F E T+++ + F M +G+ E + R+ ++ LP L R LSGGQ RR++
Sbjct: 98 LFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEE-ANDASEV 291
+ +P++++LDEP G+DP RK M ++ ++ KG T ++ T +E+ A A ++
Sbjct: 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216
Query: 292 AFLYKGRIIAQDSP 305
++KG + Q +P
Sbjct: 217 VVMHKGTVFLQGTP 230
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 64.4 bits (157), Expect = 1e-11
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-PASIYHK-- 161
+ +N SL V R + ++G S GKTTLL+ I G GEI G + PA +
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KL------- 213
T ++ + Q A+F ++ + F + Y + E L +S V+ KL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNV-----FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG 135
Query: 214 -PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL---VRKRMWDLLQVFV 269
L P + LSGG RR + AI +P LI+ DEP VG DP+ V ++ L +
Sbjct: 136 AAKL-MPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKG-RIIAQDSPDGFKS 310
G T ++ + + E ++ A++ +I+A S ++
Sbjct: 194 GV--TCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 63.3 bits (155), Expect = 1e-11
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 35/200 (17%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTA 163
+L +L +K+ E L+G + +GK+TL K I+G +++GEI G I
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL-FKGE--DITDLP- 70
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY- 222
P+E A G + + FQ +K + R V
Sbjct: 71 -------PEERARLG-IFL------------------AFQYPPEIPGVKNADFLRYVNEG 104
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT--Q 280
SGG+K+R +L +P L ILDEP G+D + + +++ +G++V++ T Q
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 281 YIEEANDASEVAFLYKGRII 300
+ + V LY GRI+
Sbjct: 165 RLLDYIKPDRVHVLYDGRIV 184
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 63.6 bits (155), Expect = 1e-11
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L +L +++ EF L+G S GK+TLL I GL + G + +L G + G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQIT----EPGPD 55
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK------YSHVLKLPNL---- 216
+ Q ++ LT++E + +D L + K + L L
Sbjct: 56 RMVVFQNYSLLPWLTVRENIAL-----AVDRV--LPDLSKSERRAIVEEHIALVGLTEAA 108
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTV 275
++ LSGG K+R++ A+ +P++++LDEP +D L R + + L+Q++ TV
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 276 IMTTQYIEEA 285
+M T ++EA
Sbjct: 169 LMVTHDVDEA 178
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 64.8 bits (158), Expect = 1e-11
Identities = 58/225 (25%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
+++ + ++ +++ ++G + +GK+TL++ I L + G + V +I HKT
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD---ITITHKTKD 77
Query: 165 -------SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP- 214
++G + Q E +F E T++ + F + M+ L +++ Y+H L +
Sbjct: 78 KYIRPVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMN----LDEVKNYAHRLLMDL 132
Query: 215 NLERPVKYLS-----GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF- 268
R V S GGQ R+++ + P +I+LDEP G+DP ++++ LL+
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192
Query: 269 VGKGRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSP-DGFKSK 311
+ +T+I+ + + E A A EV + +G I++Q SP + FK K
Sbjct: 193 TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 65.1 bits (159), Expect = 2e-11
Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 14/205 (6%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+ + +L + EF V +G S GK+TLL+ I GL++I+ G++++ + G
Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYL 223
VG + Q A++ L++ E ++F + G + ++ + + VL+L + L+R K L
Sbjct: 77 --VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-----GRTVIMT 278
SGGQ++R++ ++ +P + +LDEP +D +R +M ++ + + GRT+I
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM----RIEISRLHKRLGRTMIYV 190
Query: 279 TQ-YIEEANDASEVAFLYKGRIIAQ 302
T +E A ++ L GR +AQ
Sbjct: 191 THDQVEAMTLADKIVVLDAGR-VAQ 214
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 65.4 bits (160), Expect = 2e-11
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---K 161
+L S ++ E ++G S +GK+TL + +VG+ + G + + G A + +
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG---ADLRQWDRE 406
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGM------IY------GMDESIWLFQMRKYSH 209
G +GY+PQ++ +F + TI E + FG + G+ E I
Sbjct: 407 QLGRHIGYLPQDVELF-DGTIAENIARFGEEADPEKVIEAARLAGVHELI---------- 455
Query: 210 VLKLPN-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
L+LP + + LSGGQ++R++ A+ P L++LDEP +D +
Sbjct: 456 -LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
+ +G TV++ ++ L GRI
Sbjct: 515 ILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 63.4 bits (154), Expect = 2e-11
Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 26/219 (11%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
LN+ +L + + L+G S GK+T L+ + + ++ +GE+ + G +IY K
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG---KNIYDK 76
Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
+VG + Q+ F ++I + + + I+G+ + L ++ +++ LK L
Sbjct: 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWA--LKKAAL 133
Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
VK LSGGQ++RL I KP +I++DEP +DP+ ++ DL+ V
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VE 192
Query: 269 VGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
+ K T+++ T +++A+ S+ AF G +I + +
Sbjct: 193 LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 63.2 bits (154), Expect = 2e-11
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHKTAG 164
+ +L +KR E L+G S +GK+ AI+GL + GEI + G + + G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61
Query: 165 SKVGYMPQE-LAMFGEL-TIK----ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
+ + Q F L T+ ETL G + ++ L + LP+ E
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG----LPDPEE 117
Query: 219 PVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GR 273
+K LSGG +R+ +A+L +P +I DEP +D + + R+ LL+ G
Sbjct: 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177
Query: 274 TVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
+++ T + A A EVA + GRI+ + +
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGTVK 211
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 63.4 bits (154), Expect = 3e-11
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 26/215 (12%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NIS----QGEIWVLGGH----- 154
+ N ++ + + + ++G S GKTTLL++I + +I +G+I+ G
Sbjct: 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76
Query: 155 -PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
+ Y K KVG + Q+ F ++I + + F I+G+ L ++ + S LK
Sbjct: 77 LDVTEYRK----KVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEES--LKK 129
Query: 214 P--------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
L +P LSGGQ++RL A+ +P++I+LDEP +DP+ +R+ LL
Sbjct: 130 AALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL 189
Query: 266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
+ VI+T + A +AF+Y+G +I
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 64.0 bits (155), Expect = 3e-11
Identities = 65/266 (24%), Positives = 127/266 (47%), Gaps = 19/266 (7%)
Query: 50 YELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKE-EEEEADEGKNTEKEELKPSNVVLN 108
Y+ L K+K+ E + +++ + D K++ E +N + + VL+
Sbjct: 40 YQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLH 99
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYHK 161
+ +L +KR + +G S GK+T L+ + L ++ +GEI+ LG + S I
Sbjct: 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
+++G + Q+ F E++I + + + G+++ L ++ + S LK L VK
Sbjct: 160 ELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKS--LKSAALWDEVK 216
Query: 222 --------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
LSGGQ++RL AI +P+++++DEP +DP+ ++ +L+ K
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS 276
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRI 299
+I+T + + E F Y+G I
Sbjct: 277 IIIVTHSMAQAQRISDETVFFYQGWI 302
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 63.5 bits (155), Expect = 3e-11
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 27/214 (12%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA--- 163
L + S V E+ ++G + +GK+TL K + GL G I V GG S +T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV-GGMVLSE--ETVWDV 79
Query: 164 GSKVGYMPQEL-AMFGELTIKETLNFFG----------MIYGMDESIWLFQMRKYSHVLK 212
+VG + Q F T+++ + F G M+ +D+++ M +
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAF-GLENIGVPREEMVERVDQALRQVGMEDF----- 133
Query: 213 LPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
L R LSGGQK+R++ + +P +IILDE +DP R+ + + ++ +
Sbjct: 134 ---LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 273 R-TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
TV+ T ++EA A V + KG I+ + +P
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 64.3 bits (156), Expect = 3e-11
Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKT 162
+ + SL ++ E FV++G S +GK+T+++ + L ++G++ + G A I +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV-- 220
K+ + Q A+ +T+ + F + G++ + K L+ LE
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE---RREKALDALRQVGLENYAHS 160
Query: 221 --KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIM 277
LSGG ++R+ A+ P ++++DE +DPL+R M D L+++ RT++
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 278 TTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
+ ++EA +A + G ++ +PD
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPD 250
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.5 bits (152), Expect = 4e-11
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L LVVKR E L+G S +GK+TLL + GL + S GE+ ++ G P + A +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLV-GQPLHQMDEEARA 83
Query: 166 K-----VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERP 219
K VG++ Q + L E + ++ G Q R + +L+ L +
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR----QSRNGAKALLEQLGLGKR 139
Query: 220 VKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
+ + LSGG+++R++ A +P ++ DEP +D ++ DLL
Sbjct: 140 LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 63.1 bits (153), Expect = 4e-11
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTA- 163
VL +L L+GA+ GK+TL + GL +G + W G P Y K
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW--QGKPLD-YSKRGL 72
Query: 164 ------GSKVGYMPQELAMFGELT--IKETLNFFGMIYG-----MDESIWLFQMRKYSHV 210
+ V P++ + ++ I +L G+ +DE++ L + + H
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH- 131
Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
+P++ LS GQK+R++ A++ + + ++LDEP G+DP R +M +++ V
Sbjct: 132 -------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 271 KGRTVIMTTQYIE---EANDASEVAFLYKGRIIAQDSP 305
+G VI+++ I+ E +DA V L +G+I+ +P
Sbjct: 185 QGNHVIISSHDIDLIYEISDA--VYVLRQGQILTHGAP 220
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 62.9 bits (153), Expect = 4e-11
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL N SL ++ E LLG S GK+TL + ++GL+ +QG + G +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS-FRGQDLY---QLDRK 81
Query: 166 KVGYMPQELAMF-------------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
+ +++ + I E L +DES Q + + +L
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---TSLDESE---QKARIAELLD 135
Query: 213 LPNL-----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+ L ++ + LSGGQ +R++ A+ KP+LI+LDE +D +++ + +LL+
Sbjct: 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 268 FVGKGRTV-------IMTTQYIEEANDASEVAFLYKGRIIAQ 302
T + Q VA + KG+I+ +
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSF-----CQRVAVMDKGQIVEE 232
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 62.2 bits (151), Expect = 4e-11
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM- 176
E L G S AGK+TLLK I G++ S G+IW GH + + +V ++ +++ M
Sbjct: 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIW-FSGHDIT---RLKNREVPFLRRQIGMI 84
Query: 177 ------FGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVL-KLPNLERPVKY---LSG 225
+ T+ + + +I G + I R+ S L K+ L++ + LSG
Sbjct: 85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDI----RRRVSAALDKVGLLDKAKNFPIQLSG 140
Query: 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
G+++R+ A+++KP +++ DEP +D + + + L + F G TV+M T
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 62.7 bits (153), Expect = 4e-11
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
N L N S + E+ +LG + +GK+T+ K + GL GEI + G + K
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE 80
Query: 163 AGSKVGYMPQ-------------ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
K+G + Q ++A FG K I +D+ M Y
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIA-FGLENKKVPPKKMKDI--IDDLAKKVGMEDY-- 135
Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVF 268
L++ + LSGGQK+R++ + P++II DE +DP ++ + ++ +
Sbjct: 136 ------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR 189
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP-DGFKSK 311
+ +T+I T ++EA A +V +G++IAQ P + +K
Sbjct: 190 KTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 64.1 bits (157), Expect = 5e-11
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-- 159
P V ++ SL VK+ E LLG + AGK+TL+K + GL GEI + G I
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ------------MRKY 207
+G + Q + LT+ E + I G++ S +Y
Sbjct: 74 RDAIRLGIGMVHQHFMLVPTLTVAENI-----ILGLEPSKGGLIDRRQARARIKELSERY 128
Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
L + + + V LS G+++R+ A+ +L+ILDEP + P ++++L+
Sbjct: 129 G--LPV-DPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185
Query: 268 FVGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIA 301
+G+T+I T ++E ++ V L +G+++
Sbjct: 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220
Score = 55.2 bits (134), Expect = 4e-08
Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP----ASIYHKTAGSK 166
S V+ E + G + G++ L++AI GL+ + G I L G S +
Sbjct: 278 SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL-LNGKDVLGRLSPRERRR-LG 335
Query: 167 VGYMPQE-----LAMFGELTIKETLNFFGMIYGMDESIWLF----QMRKYSHVL------ 211
+ Y+P++ L + +L++ E L G S F +RK++ L
Sbjct: 336 LAYVPEDRHGHGLVL--DLSLAENL-VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392
Query: 212 KLPNLERPVKYLSGGQKRRLSFTIA--ILHKPQLIILDEPCVGVD----PLVRKRMWDLL 265
+ P+ + P + LSGG +++ +A + +P L+I +P G+D + +R+ +L
Sbjct: 393 RAPSPDAPARSLSGGNQQK--LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
Query: 266 QVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGF 308
G+ V++ ++ ++E + +A +Y+GRI+ P+
Sbjct: 451 D----AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 62.3 bits (152), Expect = 5e-11
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 31/172 (18%)
Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGS 165
NN +L V+ +E L+G + AGKTT+ + G + G I +L G H+ A
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGHQIARM 80
Query: 166 KVGYMPQELAMFGELTIKETL----------NFFGMIY-----------GMDES-IWLFQ 203
V Q + +F E+T+ E L F + +D + WL +
Sbjct: 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER 140
Query: 204 MRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255
+ +L+ N R L+ GQ+RRL ++ +P++++LDEP G++P
Sbjct: 141 V----GLLEHAN--RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 63.1 bits (153), Expect = 5e-11
Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 28/243 (11%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYH---- 160
LNN SL K+ + ++G + +GK+T+++ GL G+ ++G + PA++
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLKKIKEV 85
Query: 161 KTAGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--L 216
K ++G + Q E +F E TI++ + F + G ++ ++ + +++LP +
Sbjct: 86 KRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV----GKG 272
+R LSGGQKRR++ I ++LDEP G+DP K D + +F
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP---KGEEDFINLFERLNKEYK 201
Query: 273 RTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSM--------PKLSDVFYK 323
+ +IM T +++ A EV +++G++I+ SP S + PKL + YK
Sbjct: 202 KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYK 261
Query: 324 ITN 326
+ N
Sbjct: 262 LKN 264
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 64.5 bits (157), Expect = 6e-11
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTA 163
+LN + + E +LG S +GK+TLL A+ G N G I P K
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPNLERPV 220
+ G++ Q+ ++ LT++ETL F ++ + + + L L E +
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198
Query: 221 ------KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
+ +SGG+++R+S +L P L+ILDEP G+D R+ L KG+T
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258
Query: 275 VI 276
++
Sbjct: 259 IV 260
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 62.3 bits (152), Expect = 6e-11
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
VVL++ SL + + ++G + AGK+TLL + L GEI + G S K
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 165 SKVGYMPQELAMFGELTIKETLNF--F----GMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
K+ + QE + LT+++ + F F G + D I + + L L +L
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI----INEAIEYLHLEDLSD 130
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
R + LSGGQ++R + + ++LDEP +D ++ +L+ + G+T++
Sbjct: 131 RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307
+ I A+ + + L G+++ Q SPD
Sbjct: 191 VVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 62.6 bits (152), Expect = 6e-11
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 48/226 (21%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L ++ +K+ E +LG + AGK+TL + + G+ S G I + G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRK----- 75
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------LKLPNLE--- 217
G + ++E++ GM++ D LF Y V LKLP E
Sbjct: 76 -----------GLMKLRESV---GMVF-QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 218 ----------------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKR 260
+P LS GQK+R++ ++ +P++++LDEP G+DP+ V +
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK-GRIIAQDSP 305
M L+++ G T+I+ T I+ + F+ K GR+I Q +P
Sbjct: 181 MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 62.0 bits (150), Expect = 9e-11
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 35/221 (15%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLG------GH 154
+ L+ L + E LLG S +GK+TLL+ + GL + I +LG G
Sbjct: 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76
Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKL 213
A K+ + GY+ Q+ + L++ E + +I + + W ++ K
Sbjct: 77 LARDIRKSR-ANTGYIFQQFNLVNRLSVLENV----LIGALGSTPFWRTCFSWFTREQKQ 131
Query: 214 PNLE------------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKR 260
L+ + V LSGGQ++R++ A++ + ++I+ DEP +DP R
Sbjct: 132 RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
M L + G TV++T + + A Y RI+A
Sbjct: 192 MDTLRDINQNDGITVVVTLHQV-------DYALRYCERIVA 225
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 64.0 bits (156), Expect = 1e-10
Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 47/248 (18%)
Query: 79 DEGKKEEEEEADEGKNTEKE--ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA 136
E E A K + EL+P V+L + S+ V R + V+LGA+ +GK+TLL++
Sbjct: 647 HEATPTSERSAKTPKMKTDDFFELEP-KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705
Query: 137 IVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196
++ IS+G +W A + Y+PQ+ A T++ + FF D
Sbjct: 706 LLSQFEISEGRVW-------------AERSIAYVPQQ-AWIMNATVRGNILFF------D 745
Query: 197 ESIWLFQMRKYSHVLKLPNLERPVKY---------------LSGGQKRRLSFTIAILHKP 241
E + + +++ LE + LSGGQK R+S A+
Sbjct: 746 EE----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801
Query: 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEANDASEVAFLYKGRI 299
+ +LD+P +D V +R+ + + F+G G+T ++ T + A V L GR+
Sbjct: 802 DVYLLDDPLSALDAHVGERV--VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
Query: 300 -IAQDSPD 306
+ S D
Sbjct: 860 EFSGSSAD 867
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 60.2 bits (147), Expect = 1e-10
Identities = 59/199 (29%), Positives = 84/199 (42%), Gaps = 49/199 (24%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPAS----I 158
++ + S + E + G + AGKT+LL+ + GL GE+ W G P
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW--QGEPIRRQRDE 71
Query: 159 YHKTAGSKVGYMPQELAMFG-------ELTIKETLNFFGMIYGM--DESIW--LFQM--R 205
YH Q+L G ELT E L F+ ++G DE++W L Q+
Sbjct: 72 YH-----------QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA 120
Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-----GVDPLVRKR 260
+ V PV+ LS GQ+RR++ L + L ILDEP GV L
Sbjct: 121 GFEDV--------PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA-- 170
Query: 261 MWDLLQVFVGKGRTVIMTT 279
LL +G VI+TT
Sbjct: 171 ---LLAQHAEQGGMVILTT 186
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 61.2 bits (148), Expect = 2e-10
Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 21/223 (9%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYHKTA 163
L N +LV+K+ E+ ++G + +GK+TL + GL +G++ V G G + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 164 GSKVGYMPQELAMFGELTIKETLNF---------FGMIYGMDESIWLFQMRKYSHVLKLP 214
+ + E G T++E L F + +D ++ + KY H
Sbjct: 78 LVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH----- 131
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
R K LSGGQ + ++ + +P+ +I DE +DP + + ++ KG+T
Sbjct: 132 ---RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKL 317
++ T +EE +DA + + +G+I+ + P+ S S+ L
Sbjct: 189 IVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 62.3 bits (152), Expect = 2e-10
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 41/225 (18%)
Query: 81 GKKEEE-----EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK 135
G+K E+ ++A + + L V N+ S +++ E + G AG+T L+K
Sbjct: 239 GRKLEDQYPRLDKAPGEVRLKVDNLSGPGV--NDVSFTLRKGEILGVSGLMGAGRTELMK 296
Query: 136 AIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM 195
+ G + G + L GH PQ+ G + I E G++ GM
Sbjct: 297 VLYGALPRTSGYVT-LDGHEVVTRS----------PQDGLANGIVYISEDRKRDGLVLGM 345
Query: 196 D--ESIWLFQMRKYSHV---------------------LKLPNLERPVKYLSGGQKRRLS 232
E++ L +R +S +K P++E+ + LSGG +++++
Sbjct: 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVA 405
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
++ +P+++ILDEP GVD +K ++ L+ F +G ++I+
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450
Score = 43.5 bits (103), Expect = 2e-04
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPASIYH 160
L+ +L V L+G + AGK+T++K + G+ G I LG G +S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS--- 76
Query: 161 KTAGSKVGYMPQELAMFGELTIKETL-------NFFGMIYGMDESIWLFQMRKYSHVLKL 213
+ AG +G + QEL + +LTI E + N FG I W + +L
Sbjct: 77 QEAG--IGIIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKLLAR 128
Query: 214 PNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
NL ++ V LS G+++ + + + ++II+DEP
Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 59.8 bits (145), Expect = 3e-10
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL AI KP ++++DEPC +DP+ + +L+Q + K T+I+ T +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNFTIIVVTHSM 208
Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
++A S+ VAF GRI+ ++
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQ 233
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 59.0 bits (143), Expect = 5e-10
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
+L LVVKR E ++G S +GK+TLL + GL + S GE+ L G P + A
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDEDARA 83
Query: 164 ---GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER-- 218
VG++ Q + LT E + + G + R + L LE
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----DSRAGAKAL----LEAVG 135
Query: 219 --------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV- 269
P LSGG+++R++ A +P ++ DEP +D ++ DLL
Sbjct: 136 LGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
+G T+++ T + A L GR++
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 59.3 bits (143), Expect = 6e-10
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 20/211 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKT 162
+L + ++ + F ++G S +GK+TLLK + L I +I V G I+
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 163 A---GSKVGYMPQELAMFGELTIKETLNFFGMIYG----------MDESIWLFQMRKYSH 209
A +VG + Q+ F L+I + + + +G ++E + + K +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
L P LSGGQ++RL+ A+ KP+++++DEP +D + + + L+
Sbjct: 145 ----DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
+ VI++ + A A VAFLY G ++
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELV 231
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 60.9 bits (148), Expect = 8e-10
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY- 159
+P VL + + E L+G S +GK+T+ + L + G++ +L G P Y
Sbjct: 491 RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVPLVQYD 549
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNLE 217
H +V + QE +F +++E + + G+ DE I +H +++ PN
Sbjct: 550 HHYLHRQVALVGQEPVLFSG-SVRENIAY-GLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607
Query: 218 RPV-----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
LSGGQK+R++ A++ KP+++ILDE +D + + +
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR---AS 664
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
RTV++ + A ++ L KG ++
Sbjct: 665 RTVLLIAHRLSTVERADQILVLKKGSVVEM 694
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 60.7 bits (148), Expect = 8e-10
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 24/208 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
++ N SL ++ + L+G S +GK+T+ K + GL GEI + G P I +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI-LFDGIPREEIPREVLA 552
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKLP-NL 216
+ V + Q++ +F T+++ L + D +I + + + + P
Sbjct: 553 NSVAMVDQDIFLFEG-TVRDNLTLW------DPTIPDADLVRACKDAAIHDVITSRPGGY 605
Query: 217 ERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+ + LSGGQ++RL A++ P ++ILDE +DP K + D L+ +G
Sbjct: 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRG 662
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRII 300
T I+ + D E+ L +G+++
Sbjct: 663 CTCIIVAHRLSTIRDCDEIIVLERGKVV 690
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 58.4 bits (141), Expect = 1e-09
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 26/214 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH 160
+L N +L + + L+G S GK+T ++ + + ++ +G I++ G IY
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG---VDIYD 74
Query: 161 KTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
KVG + Q+ F + +I + + + I+G D+ ++ + + S LK
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEES--LKAAA 131
Query: 216 LERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
L VK LSGGQ++RL I P++I++DEPC +DP+ ++ DL+
Sbjct: 132 LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191
Query: 268 FVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
+ + T+++ T +++A S+ +F G II
Sbjct: 192 -LKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII 224
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 58.6 bits (142), Expect = 1e-09
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV----LGGHPASIYHKT 162
L + +L ++ + +G + +GK+T+++ + GL +QG + V + + K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNF----FGM--------------IYGMDESIWLF 202
KVG + Q E +F E T+ + + F FG+ + G+ ES LF
Sbjct: 83 IRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES--LF 139
Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
+ + LSGGQ RR++ + +P++++LDEP G+DP RK +
Sbjct: 140 EKNPFE--------------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185
Query: 263 DLLQVFVGKGRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSP 305
L + G T+++ T +++ AN A V L KG+++ P
Sbjct: 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 59.4 bits (144), Expect = 2e-09
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 13/154 (8%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
L + +L V E LLG + AGK+TL+K + G+ ++G I + + + HK A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 166 KVGYMPQELAMFGELTIKETLNFFG-----MIYGMDESIWLFQMRKYSHVLKLP-----N 215
+G + QEL++ ELT+ E L + G + G++ W MR + ++ L +
Sbjct: 81 GIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWRE-MRVRAAMMLLRVGLKVD 138
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
L+ V LS K+ L ++ ++II+DEP
Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172
Score = 48.6 bits (116), Expect = 4e-06
Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 19/194 (9%)
Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGS 165
+ S V R E G +G+T L+ + G+ + GEI + G P S
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL-DAVKK 338
Query: 166 KVGYMPQ---ELAMFGELTIKETLNF------------FGMIYGMDESIWLFQMRKYSHV 210
+ Y+ + + F +I + + G+ + +DE R+
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA- 397
Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
LK ++ + + LSGG ++++ + + P++II DEP G+D + ++ +++
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 271 KGRTVIMTTQYIEE 284
G+ ++M + + E
Sbjct: 458 DGKVILMVSSELPE 471
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 59.3 bits (144), Expect = 2e-09
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
P +LN S + + ++G S AGK+T+L+ + +++ G I + G + +
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW----LFQMRKYSHVLKLPNL- 216
+ +G +PQ+ +F + TI +G E + Q+ + + LP
Sbjct: 334 SLRRAIGIVPQDTVLFND-TIAY-NIKYGRPDATAEEVGAAAEAAQIHDF--IQSLPEGY 389
Query: 217 -----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
ER +K LSGG+K+R++ IL P ++ILDE +D + + L+ V
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSA 447
Query: 272 GRTVIMTTQYIEEANDASEVAFLYKGRII 300
GRT ++ + DA E+ L GRI+
Sbjct: 448 GRTTLVIAHRLSTIIDADEIIVLDNGRIV 476
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 57.8 bits (140), Expect = 2e-09
Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 17/213 (7%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV----------LGG 153
VL+ L VK E ++G S +GKTTLL+ I L+ G I V L
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 154 HPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG--MIYGMDESIWLFQMRKYSHVL 211
I + VG++ Q +F T+ E + G ++ G + + R+ +
Sbjct: 76 QKGLI--RQLRQHVGFVFQNFNLFPHRTVLENI-IEGPVIVKGEPKEEATARARELLAKV 132
Query: 212 KLPNLERPV-KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L E + LSGGQ++R++ A+ +P++I+ DEP +DP + + + ++
Sbjct: 133 GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ 192
Query: 271 KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302
+ RT+++ T + A D A F+ +GRI+ Q
Sbjct: 193 EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 57.0 bits (138), Expect = 2e-09
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL N SL V E L G S AGK+TLLK++ G I V H + S
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR--HEGAWVDLAQAS 80
Query: 166 K----------VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
+GY+ Q L + ++ E + + G+ + R+ L +P
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP- 139
Query: 216 LER----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
ER P SGG+++R++ + +++LDEP +D R+ + +L+ +
Sbjct: 140 -ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198
Query: 272 GRTVI 276
G +I
Sbjct: 199 GAALI 203
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 58.9 bits (143), Expect = 2e-09
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 20/214 (9%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+P L+ +L V+ E L+G S AGK+TL + ++ + G I + G +
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL-- 216
+++ +PQ+ +F ++ E + + G DE + ++H + LP
Sbjct: 410 AELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEAAARAAHAHEFISALPEGYD 467
Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVF 268
ER V LSGGQ++R++ AIL +++LDE +D LV++ + L+
Sbjct: 468 TYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--- 523
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
KGRT ++ + A + + +GRI+AQ
Sbjct: 524 --KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.4 bits (138), Expect = 3e-09
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG---EIWVLGGHPASIYHKT 162
VL N ++ R+ ++G S GK+TLL+A+ + +I G E VL + +IY
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN-ENIYSPN 77
Query: 163 AG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKL--- 213
+VG + Q+ F + +I + + F + G L ++ + S L
Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136
Query: 214 --PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
NL + LSGGQ++RL + +P++I++DEPC +DP+ R+ +L+Q + +
Sbjct: 137 VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE-LKQ 195
Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRII 300
T+ + T +++A AS+ FL G ++
Sbjct: 196 NYTIAIVTHNMQQAARASDWTGFLLTGDLV 225
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 56.6 bits (137), Expect = 3e-09
Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL SL + + E ++G+S +GK+TLL + GL N + GE+ G + +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 166 ----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
K+G++ Q + + T E + +I S+ + R Y +L+ LE +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK--SVKEAKERAYE-MLEKVGLEHRIN 136
Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVI 276
+ LSGG+++R++ A++++P L++ DEP +D K ++DL+ ++ + +
Sbjct: 137 HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFL 196
Query: 277 MTTQYIEEANDASEVAFLYKGRI 299
+ T +E A V + G++
Sbjct: 197 VVTHDLELAKKLDRVLEMKDGQL 219
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 58.4 bits (142), Expect = 4e-09
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 47/164 (28%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
+LG + AGK+TLL+ + G+ GE PA G KVGY+PQE + T
Sbjct: 36 VLGLNGAGKSTLLRIMAGVDKEFNGEAR-----PA------PGIKVGYLPQEPQLDPTKT 84
Query: 182 IKE-----------TLNFFGMIYG--------MDESI---------------WLF--QMR 205
++E L+ F I MD + W ++
Sbjct: 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLE 144
Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
L+ P + V LSGG++RR++ +L KP +++LDEP
Sbjct: 145 IAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Score = 31.0 bits (71), Expect = 1.3
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 34/138 (24%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS--KVGYMPQELAMFGELT 181
G + AGK+TL + I G + G I G K+ Y+ Q
Sbjct: 355 GPNGAGKSTLFRMITGQEQPDSGTI-------------KIGETVKLAYVDQS-------- 393
Query: 182 IKETL----NFFGMIYGMDESIWL--FQM--RKY--SHVLKLPNLERPVKYLSGGQKRRL 231
++ L + I G + I L ++ R Y K + ++ V LSGG++ R+
Sbjct: 394 -RDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRV 452
Query: 232 SFTIAILHKPQLIILDEP 249
+ +++LDEP
Sbjct: 453 HLAKTLKSGGNVLLLDEP 470
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 56.8 bits (137), Expect = 4e-09
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L+ P LSGGQ++RL A+ +P++++ DEP +DP ++ L + + K T+
Sbjct: 140 LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKKDMTI 198
Query: 276 IMTTQYIEEANDASE-VAFLYKGRII 300
++ T + ++A S+ VAFLYKG+I+
Sbjct: 199 VLVTHFPQQAARISDYVAFLYKGQIV 224
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 56.8 bits (137), Expect = 5e-09
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 30/222 (13%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA------------IVGLKNISQGEIWV 150
L + ++ + + L+G S GK+TLL+ I G + I
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 151 LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV 210
G ++ K +G + Q F + +I E + + I+G L + + S
Sbjct: 78 SGADVVALRRK-----IGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKS-- 129
Query: 211 LKLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
LK L VK LSGGQ++RL + P++I++DEPC +DP+ ++
Sbjct: 130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189
Query: 263 DLLQVFVGKGRTVIMTTQYIEEANDASEV-AFLYKGRIIAQD 303
DL++ + K TVI+ T +++A S+ F+Y G++I D
Sbjct: 190 DLIED-LKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 56.8 bits (138), Expect = 5e-09
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 53/204 (25%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
++ S +K E L+G S GK+TL + I+GL+ + GEI ++ +K
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI---------LFEGKDITK 79
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
+ + + E L G+ E + +Y H E LSGG
Sbjct: 80 LS-KEERRER-----VLELLEKV----GLPEEF----LYRYPH-------E-----LSGG 113
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR----MWDLLQVFVGKGRTVIM----- 277
Q++R+ A+ P+LI+ DEP +D V+ + + DL + G T +
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL---GLTYLFISHDL 170
Query: 278 -TTQYIEEANDASEVAFLYKGRII 300
+YI + +A +Y G+I+
Sbjct: 171 SVVRYI-----SDRIAVMYLGKIV 189
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 57.9 bits (141), Expect = 5e-09
Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 14/239 (5%)
Query: 73 EEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVL-NNCSLVVKRREFFVLLGASSAGKT 131
+ K+ + + + E L P L + + + L+G S AGKT
Sbjct: 331 PLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKT 390
Query: 132 TLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190
+LL A++G L QG + + G + ++ + ++ Q + T+++ + G
Sbjct: 391 SLLNALLGFLP--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGTLRDNV-LLG 446
Query: 191 MIYGMDESIWLFQMRKYSH--VLKLPN-LERPVK----YLSGGQKRRLSFTIAILHKPQL 243
DE + + + LP L+ P+ LS GQ +RL+ A+L QL
Sbjct: 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506
Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
++LDEP +D + + L + +T +M T +E+ ++ + G+I+ Q
Sbjct: 507 LLLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 56.0 bits (135), Expect = 8e-09
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 52/246 (21%)
Query: 79 DEG-----KKEEEEEADEGKNTEKEELKPSNV------VLNNCSLVVKRREFFVLLGASS 127
DEG +K ++E D +++ L SN+ VL N +L +++ E + G++
Sbjct: 14 DEGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTG 73
Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ-ELAMFGELTIKETL 186
+GKT+LL I+G S+G+I K +G ++ + Q M G TIKE +
Sbjct: 74 SGKTSLLMLILGELEPSEGKI------------KHSG-RISFSSQFSWIMPG--TIKENI 118
Query: 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK---------------YLSGGQKRRL 231
FG+ Y DE +Y V+K LE + LSGGQ+ R+
Sbjct: 119 -IFGVSY--DEY-------RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291
S A+ L +LD P +D K +++ + +T I+ T +E A ++
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 292 AFLYKG 297
L++G
Sbjct: 229 LILHEG 234
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 55.9 bits (135), Expect = 9e-09
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL AI KP ++++DEP +DP+ ++ + + + K T+I+ T +
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKKNYTIIIVTHNM 222
Query: 283 EEANDASE-VAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITND 327
++A AS+ AF Y G +I D ++ ++ PKL + TND
Sbjct: 223 QQAARASDYTAFFYLGDLIEYDKT---RNIFTNPKL-----QSTND 260
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 57.6 bits (139), Expect = 1e-08
Identities = 63/274 (22%), Positives = 117/274 (42%), Gaps = 65/274 (23%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL N S +++ + + G++ +GK++LL I+G S+G+I K +G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI------------KHSG- 487
Query: 166 KVGYMPQ-ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
++ + PQ M G TIK+ + FG+ Y DE +Y+ V+K LE +
Sbjct: 488 RISFSPQTSWIMPG--TIKDNI-IFGLSY--DEY-------RYTSVIKACQLEEDIALFP 535
Query: 223 -------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD--LLQV 267
LSGGQ+ R+S A+ L +LD P +D + K +++ L ++
Sbjct: 536 EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595
Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKG--------------------RIIAQDSPDG 307
K R I+ T +E A ++ L++G ++ ++ D
Sbjct: 596 MSNKTR--ILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDN 653
Query: 308 FKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKA 341
F ++ L++ +++ D ++ ET K
Sbjct: 654 FSAERRNSILTETLRRVSIDGDSTVFSGPETIKQ 687
Score = 51.1 bits (122), Expect = 9e-07
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
VL + S V+ + LLG + +GK+TLL A++ L + ++GEI + G S+ +T
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----L 216
G +PQ++ +F T ++ L+ + DE IW ++ S + + P+ L
Sbjct: 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYEQW--SDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKG 272
LS G K+ + +IL K ++++LDEP +DP ++RK L Q F
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK---TLKQSF--SN 1402
Query: 273 RTVIMTTQYIE 283
TVI++ +E
Sbjct: 1403 CTVILSEHRVE 1413
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 57.2 bits (138), Expect = 1e-08
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 29/292 (9%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADEG--KNTEKE--------ELKPSNVVLNNCSLVVKR 116
E K E+ ++ + EE AD N + E S+ + + S K
Sbjct: 301 EARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKA 360
Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176
+ ++G + AGKTTL+ + + + + G+I + G ++ ++ + + Q+ +
Sbjct: 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420
Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL--------ERPVKYLSGGQK 228
F +I+E + G DE ++ +H L ER + LSGG++
Sbjct: 421 FNR-SIRENIRL-GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR-LSGGER 477
Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA 288
+RL+ AIL +++LDE +D R+ + + + K RT + + +A
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA-LRKNRTTFIIAHRLSTVRNA 536
Query: 289 SEVAFLYKGRIIAQDSPDGFKSK----YSMPKLSDVFYKITNDDGTSSGPPA 336
V FL +GR+I + S K Y + + S + +TN T A
Sbjct: 537 DLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGL---LTNQPATKPLRKA 585
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 55.4 bits (133), Expect = 1e-08
Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 43/220 (19%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG------------EIWVLGGHPA 156
N +L V+R L+G S GKTT L+AI + +++ G +I+ P
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 157 SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN- 215
++ + VG + Q+ F +++ F ++ G+ L +R H++++
Sbjct: 82 AMRRR-----VGMVFQKPNPFPTMSV-----FDNVVAGLK----LAGIRDRDHLMEVAER 127
Query: 216 --------------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
L+ P LSGGQ++RL A+ +P+++++DEP +DP R+
Sbjct: 128 SLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 262 WDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
DL+ + K T+I+ T + +A S+ +F G ++
Sbjct: 188 EDLMTD-LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 55.6 bits (134), Expect = 1e-08
Identities = 54/213 (25%), Positives = 108/213 (50%), Gaps = 26/213 (12%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
L++ SL ++ + L+G S GK+T L+ + + ++ +GEI + G +IY
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG---ENIYDP 78
Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
+VG + Q+ F + +I E + + + G+ + +L + + L+ L
Sbjct: 79 HVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE--RVERSLRHAAL 135
Query: 217 ERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
VK LSGGQ++RL A+ +P+++++DEP +DP+ +++ +L+
Sbjct: 136 WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE- 194
Query: 269 VGKGRTVIMTTQYIEEANDASEV-AFLYKGRII 300
+ T+I+ T +++A S+V AF Y G++I
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 56.7 bits (138), Expect = 1e-08
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 57/189 (30%)
Query: 102 PSNVVLNNCSLVVKRREFFV-----LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156
P +L + SL FF +LG + AGK+TLL+ + G+ +GE
Sbjct: 18 PKKQILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP------ 66
Query: 157 SIYHKTAGSKVGYMPQELAMFGELTIKET--------------LNFFGMIYG-----MDE 197
G KVGY+PQE + E T++E N Y D
Sbjct: 67 -----APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDA 121
Query: 198 SI---------------WLF--QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
W Q+ L+ P + V LSGG++RR++ +L K
Sbjct: 122 LAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEK 181
Query: 241 PQLIILDEP 249
P +++LDEP
Sbjct: 182 PDMLLLDEP 190
Score = 32.8 bits (76), Expect = 0.41
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-AMFGELTI 182
G + AGK+TL K I G + G I +G +T K+ Y+ Q A+ T+
Sbjct: 357 GPNGAGKSTLFKMITGQEQPDSGTI-KIG--------ETV--KLAYVDQSRDALDPNKTV 405
Query: 183 KETLNFFGMIYGMDESIWL--FQM--RKY--SHVLKLPNLERPVKYLSGGQKRRLSFTIA 236
E I G + I + ++ R Y K + ++ V LSGG++ RL +A
Sbjct: 406 WE------EISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLH--LA 457
Query: 237 ILHKP--QLIILDEP 249
K +++LDEP
Sbjct: 458 KTLKQGGNVLLLDEP 472
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 55.2 bits (133), Expect = 1e-08
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 43/217 (19%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGSKVG 168
S V+ E L+G + AGK+TLL + G+ + S G I G P + + A +
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSI-QFAGQPLEAWSATELARHR-A 75
Query: 169 YMPQE------LAMFGELTI-------KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
Y+ Q+ + ++ LT+ E LN +D+ KL
Sbjct: 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD--------------KLG- 120
Query: 216 LERPVKYLSGGQKRRLSFTIAILH-----KP--QLIILDEPCVGVDPLVRKRMWDLLQVF 268
R LSGG+ +R+ +L P QL++LDEP +D + + LL
Sbjct: 121 --RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 269 VGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDS 304
+G ++M++ + A L +G+++A
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 55.4 bits (133), Expect = 1e-08
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 13/211 (6%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V N ++ + F ++G + GK+TLL+ + L + G +W+ G H K
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 165 SKVGYMPQELAMFGELTIKETLN--------FFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
++G + Q G++T++E + F DE M+ + + L +
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA-TGITHLAD- 138
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTV 275
+ V LSGGQ++R + + + +++LDEP +D + + +LL ++ KG T+
Sbjct: 139 -QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197
Query: 276 IMTTQYIEEA-NDASEVAFLYKGRIIAQDSP 305
+ +A AS + L +G+I+AQ +P
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAP 228
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 55.2 bits (133), Expect = 1e-08
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
P +L+ SL + L+G + +GK+TLLK + + S+GEI +L P +
Sbjct: 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSS 80
Query: 161 KTAGSKVGYMPQELAMFGELTIKE-----------TLNFFGMI--YGMDESIWLFQMRKY 207
K KV Y+PQ+L +T++E L FG ++E+I L ++
Sbjct: 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+H R V LSGG+++R + + + ++LDEP +D + + L+
Sbjct: 141 AH--------RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 268 FVG-KGRTVIMTTQYIEEANDASE--VAFLYKGRIIAQDSPD 306
+G TVI I A + VA L G +IAQ +P
Sbjct: 193 LSQERGLTVIAVLHDINMAARYCDYLVA-LRGGEMIAQGTPA 233
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 55.1 bits (133), Expect = 2e-08
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVIMTTQY 281
LSGGQK+R++ A++H+P L++LDEP +D L R M DL++ ++ G TV++ T
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 282 IEEA 285
+ EA
Sbjct: 194 VSEA 197
Score = 36.2 bits (84), Expect = 0.023
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148
VLN L + +F ++G S GK+TLL+ + GL+ S GE+
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 55.0 bits (132), Expect = 2e-08
Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
L N S+ + + L+G S GK+T ++ + + ++ +G++ + G IY
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG---EDIYEP 84
Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDES----IWLFQMRKYSHVLK 212
VG + Q+ F ++I + + + I+G ++ + +R + +
Sbjct: 85 DVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 213 LPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
+ L+ P LSGGQ++RL + KP++I+ DEP +DP+ R+ DL+ + + K
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI-MNLKK 202
Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRII 300
T+++ T +++A S+ F G +I
Sbjct: 203 DYTIVIVTHNMQQAARISDYTGFFLMGELI 232
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 55.0 bits (133), Expect = 2e-08
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL A+ +P++++LDEP +DP+ ++ +L+Q + K T+++ T +
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE-LKKKYTIVIVTHNM 203
Query: 283 EEANDAS-EVAFLYKGRIIAQDSPD 306
++A S AF Y G ++ +
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTE 228
Score = 33.4 bits (77), Expect = 0.19
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI 137
L N +L + + + L+G S GK+TLL+++
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 54.5 bits (131), Expect = 2e-08
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
E ++ G + AGKTTLL+ + GL ++ G+I + G A+ ++ + Y+ +
Sbjct: 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRS--RFMAYLGHLPGLK 94
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKYLSGGQKRRLSF 233
+L+ E L+F ++G + L + L + V+ LS GQK+RL+
Sbjct: 95 ADLSTLENLHFLCGLHGRRAK------QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLAL 148
Query: 234 TIAILHKPQLIILDEPCVGVDP 255
L L +LDEP +D
Sbjct: 149 ARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 55.7 bits (134), Expect = 2e-08
Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA 163
LNN SL V + + ++GAS AGK+TL++ + L+ + G + V G ++ + A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
++G + Q + T+ + + +D + RK + +L L L ++ Y
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNV---ALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137
Query: 223 ---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMT 278
LSGGQK+R++ A+ P++++ DE +DP + + +LL+ + G T+++
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197
Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDS 304
T ++ VA + G +I Q +
Sbjct: 198 THEMDVVKRICDCVAVISNGELIEQGT 224
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 55.8 bits (135), Expect = 2e-08
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 18/205 (8%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168
N SL V+ E L G AG+T L + + GL+ G I L G + G
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM-LNGKEINALSTAQRLARG 339
Query: 169 --YMP---QELAMFGELTIKETLNFFGMIYGMDESIWLFQMR------KYSHVL--KLPN 215
Y+P Q ++ + + N + + W+ R +Y L K +
Sbjct: 340 LVYLPEDRQSSGLYLDAPL--AWNVCALTHN-RRGFWIKPARENAVLERYRRALNIKFNH 396
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
E+ + LSGG ++++ + PQL+I+DEP GVD R ++ L++ + V
Sbjct: 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAV 456
Query: 276 IMTTQYIEEAND-ASEVAFLYKGRI 299
+ + +EE A V +++G I
Sbjct: 457 LFISSDLEEIEQMADRVLVMHQGEI 481
Score = 44.7 bits (106), Expect = 7e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
VL + E LLG + AGK+TL+K I G+ G + +GG+P +
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKA 83
Query: 165 SKVG-YM-PQELAMFGELTIKETLNFFGM 191
++G Y+ PQE +F L++KE + FG+
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENI-LFGL 111
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 54.5 bits (132), Expect = 2e-08
Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 35/224 (15%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----IS----QGEIWVLGGHPA 156
L + +L + + + L+G S GK+TLL+ + N I +GE+ + G
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCL----NRMNDLIPGARVEGEVLLDG---K 74
Query: 157 SIYHKTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
+IY +VG + Q+ F ++I + + + ++G+ + L ++ + S L
Sbjct: 75 NIYDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDKE-LDEIVESS--L 130
Query: 212 KLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
K L VK LSGGQ++RL A+ KP+++++DEP +DP+ ++ +
Sbjct: 131 KKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDAS-EVAFLYKGRIIAQDSPD 306
L+ K T+++ T +++A S AF Y G ++ D
Sbjct: 191 LITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 54.7 bits (131), Expect = 3e-08
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 23/212 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------------KNISQGEIWVLGGH 154
LN S + + E+ ++G + +GK+T + I GL + ++ +W L
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP 214
++ VG ++ FG + + MI +DE++ M +
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFG--MENQGIPREEMIKRVDEALLAVNMLDFK------ 134
Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR- 273
R LSGGQK+R++ I +P++IILDE +DP R+ + ++ K +
Sbjct: 135 --TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
TV+ T ++EA + + + G II + +P
Sbjct: 193 TVLSITHDLDEAASSDRILVMKAGEIIKEAAP 224
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 55.7 bits (135), Expect = 3e-08
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 38/159 (23%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKT 162
+ N +L+++ E ++G + GKTTLL+ +VG G + W +
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW------------S 379
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-------VL-KL- 213
+ +GY Q+ A + TL D W+ Q R+ L +L
Sbjct: 380 ENANIGYYAQDHA--YDFENDLTL--------FD---WMSQWRQEGDDEQAVRGTLGRLL 426
Query: 214 ---PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
++++ VK LSGG+K R+ F ++ KP ++++DEP
Sbjct: 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 53.6 bits (130), Expect = 4e-08
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 43/230 (18%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+L++ SL ++ E +LG + AGK+TLL+A+ G + GE+ L G P +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR-LNGRPLA----- 67
Query: 163 AGSKVGYMPQELA-MFGELTIKETLNF-FGM--IYGMDESIWLFQMRK----YSHVLKLP 214
+ P ELA L +L+F F + + M + + + L
Sbjct: 68 -----DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV 122
Query: 215 NL----ERPVKYLSGGQKRRLSF--TIAILH----KPQLIILDEPCVGVDPLVRKRMWDL 264
+L R LSGG+++R+ +A L P+ ++LDEP +D + + L
Sbjct: 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL 182
Query: 265 LQVFVGK-GRTVI-------MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+ + G VI + +Y A + L++GR++A +P
Sbjct: 183 ARQLAHERGLAVIVVLHDLNLAARY------ADRIVLLHQGRLVADGTPA 226
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 54.9 bits (133), Expect = 5e-08
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---- 162
L++ S + + L+G + AGK+TLLK + G G I + G T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL-IDGQEMRFASTTAALA 78
Query: 163 AGSKVGYMPQELAMFGELTIKETL------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
AG + Y QEL + E+T+ E L + G++ + + + +L +L
Sbjct: 79 AGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIV---NRR----LLNYEA-REQLEHL 128
Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+ P+KYLS GQ++ + A+ ++I DEP
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167
Score = 44.5 bits (106), Expect = 7e-05
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 36/191 (18%)
Query: 111 SLVVKRRE---FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167
S V+ E F L+GA G++ L+K + G + G++ L G P I +
Sbjct: 273 SFSVRAGEIVGLFGLVGA---GRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPRDAIRA 328
Query: 168 GYM--PQ---ELAMFGELTIKETLN--------FFGMIY--GMDESIWLFQMRKYSHVLK 212
G M P+ + ++ + +N G + + +R + +K
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN--IK 386
Query: 213 LPNLERPVKYLSGG--QK----RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
P+ E+ + LSGG QK R LS + ++I+LDEP G+D + +++++
Sbjct: 387 TPSREQLIMNLSGGNQQKAILGRWLSEDM------KVILLDEPTRGIDVGAKHEIYNVIY 440
Query: 267 VFVGKGRTVIM 277
+G V+
Sbjct: 441 ELAAQGVAVLF 451
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 54.7 bits (132), Expect = 6e-08
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
L++ SLV++ E L+G S +GK+TL+ I G+I +L GH A +
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDGHDLADYTLASLR 405
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKLPN-L 216
+V + Q++ +F + TI + YG E ++ + V KLP L
Sbjct: 406 RQVALVSQDVVLFND-TIANNIA-----YGRTEQADRAEIERALAAAYAQDFVDKLPLGL 459
Query: 217 ERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+ P+ LSGGQ++RL+ A+L ++ILDE +D + + L+ + +G
Sbjct: 460 DTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QG 518
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
RT ++ + A + + GRI+ +
Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVER 548
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 52.9 bits (127), Expect = 6e-08
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASI 158
P + +L N + + + E L+G S GK+TLL ++G GE+W+ +
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLE 217
A ++G + Q+ +F L++ + L F + ++ R ++ L+ L+
Sbjct: 73 --PAAQRQIGILFQDALLFPHLSVGQNLLF-----ALPATLKGNARRNAANAALERSGLD 125
Query: 218 ----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGK 271
+ LSGGQ+ R++ A+L +P+ ++LDEP +D +R R W +V
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV-RAA 184
Query: 272 GRTVIMTTQYIEEANDASEV 291
G + T +++ S V
Sbjct: 185 GIPTVQVTHDLQDVPAGSRV 204
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 52.9 bits (127), Expect = 7e-08
Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA------------IVGLKNISQGEIWVL 151
N L + +L + R+ L+G S GK+TLL+ I G + +I+
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY-- 73
Query: 152 GGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
+I KVG + Q+ F ++I E + + G+ + L ++ + S L
Sbjct: 74 ----GNIDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERS--L 126
Query: 212 KLPNLERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
+ L VK LSGGQ++RL I +P +I++DEP +DP+ ++ +
Sbjct: 127 RGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQD 303
L++ + K T+++ T +++A S+ AF G ++ D
Sbjct: 187 LMEE-LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 53.2 bits (128), Expect = 8e-08
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 18/215 (8%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L + S + + ++ ++G + +GK+T+ K ++G++ + GEI + + K
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRK 83
Query: 167 -VGYMPQ--ELAMFGELTIKETLNFFGMIYGMD-ESIWLFQM-RKYSHVLKLPNLERPVK 221
+G + Q + G +K + + +G++ ++ +M R+ S LK ++
Sbjct: 84 HIGIVFQNPDNQFVGS-IVK-----YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD 137
Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVI 276
Y LSGGQK+R++ + P +IILDE +DP R+ + DL++ V T+I
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITII 197
Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSP-DGFKS 310
T + EA +A V + KG + + +P + F
Sbjct: 198 SITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 54.0 bits (130), Expect = 9e-08
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKT 162
N+VL N +L V R F L+G + +GK+TL ++G +++GEI L G P +S+ H
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRPLSSLSHSV 412
Query: 163 AGSKVGYMPQE---LA--MFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN 215
V + Q+ LA +T+ ++ +E +W L ++ LP+
Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLGRDIS--------EEQVWQALETVQLAELARSLPD 464
Query: 216 -----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
L LS GQK+ L+ ++ PQ++ILDE +D + + L V
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA-VR 523
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+ T+++ + +A + L++G+ + Q
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 54.1 bits (130), Expect = 9e-08
Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 21/212 (9%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYH--KTA 163
+++ S ++R E + G AG+T L++A+ G +G ++ + G P I + +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF-INGKPVDIRNPAQAI 334
Query: 164 GSKVGYMPQE---------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL- 213
+ + +P++ L + +T+ L F +D + L + LK+
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393
Query: 214 ---PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
P L P+ LSGG +++ +L P+++ILDEP GVD + ++ L+
Sbjct: 394 TASPFL--PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451
Query: 271 KGRTVIMTTQYIEEANDASE-VAFLYKGRIIA 301
+G +I+ + + E S+ V + +G++
Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483
Score = 49.1 bits (117), Expect = 3e-06
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHP--ASIYHKT 162
L+ L V+ E L G + AGK+TL+K + G+ GEI G P AS T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNIRDT 75
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFG---MIYG--MDESIWLFQMRKYSHVLKLP--N 215
+ + + QEL + EL++ E + F G + G M + + + L+L N
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+ RPV GGQ++ + A+ + +L+ILDEP
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP 168
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 54.0 bits (130), Expect = 9e-08
Identities = 61/237 (25%), Positives = 91/237 (38%), Gaps = 70/237 (29%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--GHPASIYHKTA 163
VL SL + E ++GAS +GK+TL+ NI LG P S ++ A
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLM-------NI-------LGCLDKPTSGTYRVA 68
Query: 164 GSKVGYM-PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY---SHVLKLPNLERP 219
G V + LA FG I FQ +Y SH+ N+E P
Sbjct: 69 GQDVATLDADALAQLRR-------EHFGFI---------FQ--RYHLLSHLTAAQNVEVP 110
Query: 220 VKY-------------------------------LSGGQKRRLSFTIAILHKPQLIILDE 248
Y LSGGQ++R+S A+++ Q+I+ DE
Sbjct: 111 AVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170
Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
P +D + + +L +G TVI+ T + A A V + G I+ + P
Sbjct: 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR-NPP 226
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 52.5 bits (126), Expect = 1e-07
Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS 157
S + + N L + + + +G S GK+T+L+ L ++ +G++ H +
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTF---HGKN 78
Query: 158 IYHKTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYG----MDESI--WLFQMRK 206
+Y ++G + Q+ F + +I + + + I G MDE + L Q
Sbjct: 79 LYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAAL 137
Query: 207 YSHV---LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
+ V LK L LSGGQ++RL AI +P++I++DEPC +DP+ R+ +
Sbjct: 138 WDEVKDKLKQSGLS-----LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEV-AF 293
L+ + + T+I+ T +++A S++ AF
Sbjct: 193 LMHE-LKEQYTIIIVTHNMQQAARVSDMTAF 222
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 52.3 bits (125), Expect = 1e-07
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL AI +P++++LDEPC +DP+ +R+ +L+ V + K T+ + T +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM-VELKKDYTIALVTHNM 208
Query: 283 EEANDASEVAFLY 295
++A ++ +
Sbjct: 209 QQAIRVADTTAFF 221
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 53.4 bits (129), Expect = 1e-07
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
++ SL ++R + L+G S +GK+TL A++ L SQGEI G I
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDG---QDI---DG 352
Query: 164 GSKVGYMPQELAM-------FGELT--------IKETLNFFGMIYGMDESIWLFQMRKYS 208
S+ P M +G L+ I+E L E + ++
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAE-----RDQRVI 407
Query: 209 HVLKLPNLERPVKY-----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
L+ L+ + SGGQ++R++ A++ KP+LI+LDEP +D V+ ++ D
Sbjct: 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467
Query: 264 LL 265
LL
Sbjct: 468 LL 469
Score = 46.1 bits (110), Expect = 2e-05
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNIS---QGEIWVLG----GHPA 156
+ S ++ E L+G S +GK+ +I+GL + G I G
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 157 SIYHKTAGSKVGYMPQELAMFG-------ELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
G+K+G + QE M + E L G+ + + +
Sbjct: 85 RQLRGVRGNKIGMIFQE-PMTSLNPLHTIGKQLAEVLRLH---RGLSRAAARARALELLE 140
Query: 210 VLKLPNLERPVK-Y---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
++ +P E+ + Y LSGGQ++R+ +A+ ++P L+I DEP +D V+ ++ DLL
Sbjct: 141 LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLL 200
Query: 266 QVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302
+ + G ++ T + A V + G I+
Sbjct: 201 KELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 51.7 bits (124), Expect = 2e-07
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Query: 98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
+E VL+N S + E ++G+S +GK+TLL + GL + G++ + G P S
Sbjct: 16 QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMS 74
Query: 158 IYHKTAGS-----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
A + K+G++ Q + + T E + +I + + +L
Sbjct: 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE---INSRALEMLA 131
Query: 213 LPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
LE + LSGG+++R++ A+++ P+L++ DEP +D ++ LL
Sbjct: 132 AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 52.0 bits (124), Expect = 2e-07
Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTA 163
LNN ++ + + L+G S GK+T L+ + + ++ +G I + G +IY
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 164 G-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
K+G + Q F ++I + +++ I+G + L ++ + S LK L
Sbjct: 82 DILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQS--LKKSALWN 138
Query: 219 PVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
VK LSGGQ++RL + +P +I++DEP +DP+ ++ +L+ + +
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI-INLK 197
Query: 271 KGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
+ T+I+ T +++A S+ AF G I + S D
Sbjct: 198 ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 51.9 bits (125), Expect = 2e-07
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL I +P++++LDEPC +DP+ R+ +L+ + + TV++ T +
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE-LKQDYTVVIVTHNM 215
Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
++A S+ AF+Y G +I + D
Sbjct: 216 QQAARCSDYTAFMYLGELIEFGNTD 240
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.6 bits (123), Expect = 2e-07
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
L S+ ++ + +G S GK+T L+ + ++ +GEI + G +IY K
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG---RNIYDK 75
Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
VG + Q F + +I E + + + G+ ++ ++ Q + LK L
Sbjct: 76 GVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQ--RVEETLKGAAL 132
Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
VK LSGGQ++RL A+ P ++++DEP +DP+ ++ +L+
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
VI+T + A + + AF Y G ++ D
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 52.5 bits (126), Expect = 2e-07
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ + +L +KR E L+G + +GK+TL + GL GEI +L G P S
Sbjct: 334 DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-LLDGKPVS---- 388
Query: 162 TAGSKVGYMPQELAMFGELTI-KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
A Y A+F + + + L G WL Q + +H L +
Sbjct: 389 -AEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWL-QRLELAHKTSLNDGRFSN 446
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTT 279
LS GQK+RL+ +A+L + +++LDE DP R+ + LL + +G+T+ +
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 51.6 bits (123), Expect = 2e-07
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL I KP++I++DEP +DP+ ++ +L++ K T+I+ T +
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNM 207
Query: 283 EEANDASE-VAFLYKGRII 300
++A S+ AF Y G ++
Sbjct: 208 QQAARVSDYTAFFYMGDLV 226
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 52.2 bits (126), Expect = 3e-07
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 31/147 (21%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM-P----- 171
EF VL+G S GK+TLL+ + GL+ I+ GEIW+ G V + P
Sbjct: 31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI------------GGRVVNELEPADRDI 78
Query: 172 ----QELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHV---LKL-PNLERPVKY 222
Q A++ ++++E + + I GM I + + L+L P L+R +
Sbjct: 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI----EERVAEAARILELEPLLDRKPRE 134
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEP 249
LSGGQ++R++ AI+ +P + + DEP
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEP 161
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 50.5 bits (121), Expect = 3e-07
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 39/212 (18%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
VL N S VK E ++G + AGK+TL+ A+ +G+I + G ++I + S
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----NLERPVK 221
+ +PQ+ +F TI+ L+ F DE I+ L++ N
Sbjct: 83 SLTIIPQDPTLFSG-TIRSNLDPFDEY--SDEEIY--------GALRVSEGGLN------ 125
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD--------PLVRKRMWDLLQVFVGKGR 273
LS GQ++ L A+L +P++++LDE +D +R+
Sbjct: 126 -LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---------TNS 175
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
T++ + D ++ + G + D P
Sbjct: 176 TILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 51.4 bits (123), Expect = 3e-07
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 14/209 (6%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
N VL N S + + LLG + +GK+TLL A + L N +G+I + G S+ +
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQIDGVSWNSVPLQKW 75
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----L 216
G +PQ++ +F T ++ L+ +G DE IW ++ S + + P L
Sbjct: 76 RKAFGVIPQKVFIFSG-TFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTV 275
LS G K+ + ++L K ++++LDEP +DP+ + + L Q F TV
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC--TV 190
Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDS 304
I++ IE + + + ++ DS
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKVRQYDS 219
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.2 bits (123), Expect = 3e-07
Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 10/83 (12%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VRKRMWDLLQVFVGKGRTVIMT 278
LSGGQ++RL AI +P++++LDEP +DP+ + + + +L + T+++
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKY-----TIVIV 223
Query: 279 TQYIEEANDASEV-AFLYKGRII 300
T +++A S+ AF+Y G+++
Sbjct: 224 THNMQQAARVSDYTAFMYMGKLV 246
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 51.0 bits (122), Expect = 3e-07
Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
LLG + +GK+TLL+ + G G + + G + + +V + Q+ LT
Sbjct: 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91
Query: 182 IKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLS 232
+++ + + D ++ + + +L +L +R + LSGG+++R+
Sbjct: 92 VRDVVALGRIPHRSLWAGDSPHDAAV----VDRALARTELSHLADRDMSTLSGGERQRVH 147
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE-V 291
A+ +P+L++LDEP +D + L++ G TV+ + A + V
Sbjct: 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207
Query: 292 AFLYKGRIIAQDSP 305
L GR++A P
Sbjct: 208 VVLDGGRVVAAGPP 221
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.8 bits (122), Expect = 4e-07
Identities = 50/213 (23%), Positives = 105/213 (49%), Gaps = 26/213 (12%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
L +L ++ + L+G S GK+T L+ + + ++ +GE+ + G IY
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG---QDIYKS 75
Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-- 214
+VG + Q+ F ++I + + + +G+ + L ++ + S LK
Sbjct: 76 DIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKS--LKGAAL 132
Query: 215 ------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
L++ LSGGQ++RL A+ +P+++++DEP +DP+ ++ +L+Q
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE- 191
Query: 269 VGKGRTVIMTTQYIEEANDAS-EVAFLYKGRII 300
+ K T+++ T +++A+ S + AF G I+
Sbjct: 192 LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.9 bits (122), Expect = 4e-07
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
LN+ S VK+ E+ ++G + +GK+T ++ I GL G+I + G
Sbjct: 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-------DLLT 72
Query: 164 GSKVGYMPQELAM--------FGELTIKETLNFFG----------MIYGMDESIWLFQMR 205
V + ++ M F T+++ + F G M ++E++ L M+
Sbjct: 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAF-GLENKGIPHEEMKERVNEALELVGMQ 131
Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
+ ER LSGGQK+R++ A+ +P++IILDE +DP R +L+
Sbjct: 132 DFK--------EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL---ELI 180
Query: 266 QVFVG----KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
+ G TVI T ++E + V + G++ + +P
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTP 224
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 51.6 bits (124), Expect = 5e-07
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 44/198 (22%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------ 157
+L+N S V E + ++G + AGK+TLL I G HP
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-------------DHPQGYSNDLT 319
Query: 158 IYHKTAGS---------KVGYMPQELAMFGELTIKET-LNFFGMIYGMDESIWLFQ---- 203
++ + GS +GY+ L + + + + N ++ G +SI ++Q
Sbjct: 320 LFGRRRGSGETIWDIKKHIGYVSSSLHL--DYRVSTSVRNV--ILSGFFDSIGIYQAVSD 375
Query: 204 --MRKYSHVLKLPNL-----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256
+ L + + + P LS GQ+R A++ P L+ILDEP G+DPL
Sbjct: 376 RQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Query: 257 VRKRMWDLLQVFVGKGRT 274
R+ + + V + +G T
Sbjct: 436 NRQLVRRFVDVLISEGET 453
Score = 48.9 bits (117), Expect = 3e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L+R KYLS G+ R+ A++ +P L+ILDEP G+D R+++ +LL G T+
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188
Query: 276 IM 277
++
Sbjct: 189 VL 190
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 50.1 bits (119), Expect = 6e-07
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PNLERPVKYLSGGQKRRLSFT 234
+ L F I G ++ +++ V +L L+ +K +S G KR L+
Sbjct: 142 LLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALL 201
Query: 235 IAIL---HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
+A+L K L+++DEP G+ P + +++ +LL+ KG +I TT
Sbjct: 202 LALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249
Score = 33.6 bits (76), Expect = 0.18
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNI 143
V++G + +GK+ LLKA+ L +
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLL 25
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 51.1 bits (123), Expect = 6e-07
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 34/195 (17%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYHKTAG 164
+++ S ++R E + G AG+T L++ + G +GEI+ + G P I +
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF-IDGKPVKIRN---- 331
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMD--ESIWLFQMRKYSHV------------ 210
PQ+ G + E G++ M ++I L + +++
Sbjct: 332 ------PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTI 385
Query: 211 --------LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
+K + E + LSGG +++ +L P+++ILDEP G+D + ++
Sbjct: 386 LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY 445
Query: 263 DLLQVFVGKGRTVIM 277
L+ V +G +I+
Sbjct: 446 KLINQLVQQGVAIIV 460
Score = 42.6 bits (101), Expect = 4e-04
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYH--KT 162
L+N SL V+ E L G + AGK+TL+K + G+ +GEI + G + T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDT 79
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFG---MIYG-MDESIWLFQMRKYSHVLKLP-NLE 217
+ + + QELA+ EL++ E + F G G MD + +K LKL N
Sbjct: 80 ERAGIAIIHQELALVKELSVLENI-FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
PV L GQ++ + A+ + +L+ILDEP
Sbjct: 139 TPVGNLGLGQQQLVEIAKALNKQARLLILDEP 170
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.0 bits (119), Expect = 8e-07
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----GLKNIS-QGEIWVLGGHPASIYHK 161
L+ SL + +E L+G S GK+T L+ + ++NI GEI G +IY
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG---QNIY-- 74
Query: 162 TAGSK---------VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
GSK VG + Q+ F ++ + + + I G+ + + Q + S LK
Sbjct: 75 --GSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEES--LK 129
Query: 213 LP--------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VRKR 260
NL+R + SGGQ++R+ A+ +P++++LDEP +DP+ + +
Sbjct: 130 QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
+ +L + T IM T +++A S+ AFL G +I
Sbjct: 190 LMELKHQY-----TFIMVTHNLQQAGRISDQTAFLMNGDLI 225
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 50.9 bits (122), Expect = 8e-07
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP------LVRKRMWDLLQVFVG 270
ER V LSGGQK+R+S A+L +++ILD+ VD L R W G
Sbjct: 447 ERGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW-------G 498
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+GRTVI++ + +ASE+ + G I +
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148
+ L N + +K + + G + +GK+TLL I ++S+G+I
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 50.1 bits (120), Expect = 9e-07
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYH 160
VLNN SL +K E LLG S GK+TL + +VGL++ SQG + W G P +
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWR--GEPLA--- 77
Query: 161 KTAGSKVGYMPQELAM--------------FGELTIKETLNFFGMIYGMDESIWLFQMRK 206
K ++ +++ M E+ I+E L + +D++ ++ +
Sbjct: 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI-IREPLRH---LLSLDKAE---RLAR 130
Query: 207 YSHVLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
S +L+ +L +RP + LSGGQ +R+ A+ +P+L+ILDE +D +++
Sbjct: 131 ASEMLRAVDLDDSVLDKRPPQ-LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189
Query: 261 MWDLLQ 266
+ LL+
Sbjct: 190 VIRLLK 195
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 49.5 bits (119), Expect = 9e-07
Identities = 53/224 (23%), Positives = 82/224 (36%), Gaps = 49/224 (21%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV-GY 169
S V+ E L+G + AGK+TLL + GL G I G P + ++ Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSI-QFAGQPLEAWSAAELARHRAY 73
Query: 170 ----------MP--QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL 216
MP Q L + + + + L L L
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPD-------------KTRTEAVASALNEVAEALGLDDKL 120
Query: 217 ERPVKYLSGGQKRRLSFTIAILH-----KP--QLIILDEPCVGVDPLVRKRMWDLLQVFV 269
R V LSGG+ +R+ +L P QL++LDEP +D + + LL
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180
Query: 270 GKGRTVIM-------TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+G V+M T ++ A V L +G+++A D
Sbjct: 181 QQGIAVVMSSHDLNHTLRH------ADRVWLLKQGKLLASGRRD 218
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 49.7 bits (118), Expect = 9e-07
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKT 162
+L S+ + + + ++G S GK+T LK + + + + E+ V G +IY +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGRVEFFNQNIYERR 80
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGM------IYGMDESIWLFQMRKYSHV---LKL 213
+ + ++++M + N F M YG+ W ++ V LK
Sbjct: 81 V--NLNRLRRQVSM-----VHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD 133
Query: 214 PNLERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
+L +K+ LSGGQ++RL A+ KP+++++DEPC G+DP+ ++ L+
Sbjct: 134 ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193
Query: 266 QVFVGKGR-TVIMTTQYIEEANDASEVAFLYKG 297
Q + T+++ + + + + S+ +KG
Sbjct: 194 QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 49.2 bits (118), Expect = 1e-06
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGH---PASIYH 160
+L +L VK+ E ++G + +GK+TL K I G + ++ G I G
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL-FKGQDLLELEPDE 73
Query: 161 KT-AGSKVGY-MPQEL-----AMFGELTIKETLNFFGMIYG---MDESIWLFQMRKYSHV 210
+ AG + + P+E+ F ++ LN G +D +L ++ +
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEF----LRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 211 LKLPN--LERPVKY-LSGGQKRRLS-FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
L + L R V SGG+K+R +A+L +P+L ILDE G+D K + + +
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALL-EPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 267 VFVGKGRTVIMTTQY--IEEANDASEVAFLYKGRIIAQDSPD 306
R+ ++ T Y + V L GRI+ +
Sbjct: 189 RLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 49.1 bits (117), Expect = 1e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L LSGGQ++RL A+ P ++++DEP +DP+ +++ +L+ K V
Sbjct: 149 LHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIV 208
Query: 276 IMTTQYIEEANDASEVAFLYKGRII 300
I+T + A + + AF Y G ++
Sbjct: 209 IVTHNMQQAARVSDQTAFFYMGELV 233
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 49.2 bits (117), Expect = 2e-06
Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL AI KP ++++DEPC +DP+ +++ +L + + + T+IM T +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC-LELKEQYTIIMVTHNM 220
Query: 283 EEAN 286
++A+
Sbjct: 221 QQAS 224
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.9 bits (117), Expect = 2e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L++P LSGGQ++RL AI +P ++++DEPC +DP+ + DL+ V
Sbjct: 142 LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIV 201
Query: 276 IMTTQYIEEANDASEVAF 293
I+T + A + + AF
Sbjct: 202 IVTHNMQQAARVSDQTAF 219
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.0 bits (117), Expect = 2e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L P LSGGQ++RL AI P++I++DEPC +DP+ ++ +L+ V
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIV 216
Query: 276 IMTTQYIEEANDASEVAFLYKGRII 300
I+T + A + AF + G ++
Sbjct: 217 IVTHSMQQAARVSQRTAFFHLGNLV 241
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 48.5 bits (115), Expect = 2e-06
Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 13/205 (6%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQ--GEIWVLGGHPASIYHKTA 163
L + ++ +++ + L+GAS GK+T L+ + + I++ G + + G +
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 164 GSKVGYMPQELAMFGELTIKETLNF----FGMIYGMDESIWLFQ--MRKYSHVLKLPN-L 216
VG + Q+ +F + +I E +++ GMI DE L ++K ++ + L
Sbjct: 78 RKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
++ LSGGQ++RL A+ KP+L++LDEP +DP+ + +LL+ + ++I
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE-LSHNLSMI 195
Query: 277 MTTQYIEEANDASE-VAFLYKGRII 300
M T +++ ++ AF + G +I
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELI 220
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 49.5 bits (118), Expect = 3e-06
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 33/170 (19%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
VL N +L +K + ++G S AGKTTLL+ I+G +Q P S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG----AQKGRGEEKYRPDSGKVEVPK 452
Query: 165 SKVGYM-PQEL-AMFGELTIKE-----------TLNFFGMIYGMDESIWLFQMRKYSHVL 211
+ V + P E FGE+TI E + D RK+S
Sbjct: 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV---LYRRKFSE-- 507
Query: 212 KLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
LS GQK R + +P ++++DE +D L R+
Sbjct: 508 -----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV 546
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 48.3 bits (115), Expect = 3e-06
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL AI P++I++DEP +DP+ ++ DL++ + TV++ T +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNM 239
Query: 283 EEANDASE--VAFLYKGRIIAQDSPD 306
++A S+ FL G ++ D D
Sbjct: 240 QQAARISDKTAVFLTGGELVEFDDTD 265
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 49.5 bits (118), Expect = 3e-06
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 122 LLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
L+G S AGKTTL+ + G K +G+I + G P +T GY Q +
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI-SGFPKK--QETFARISGYCEQNDIHSPQ 967
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER---------PVKYLSGGQKRR 230
+T++E+L + + E +M V++L L+ V LS Q++R
Sbjct: 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKR 1027
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
L+ + ++ P +I +DEP G+D + ++ V GRTV+ T
Sbjct: 1028 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1075
Score = 43.7 bits (103), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIY--H 160
+L + S ++K +LLG S+GKTTLL A+ G + S GEI G+ + +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPR 238
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNF 188
KT+ Y+ Q G +T+KETL+F
Sbjct: 239 KTS----AYISQNDVHVGVMTVKETLDF 262
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 47.9 bits (114), Expect = 4e-06
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 223 LSGGQKRRLSF--TIAILHKPQLIILDEPCVGVDPL----VRKRMWDLLQVFVGKGRTVI 276
LSGGQ++RL TIAI +P++I++DEPC +DP+ + + M +L + F T++
Sbjct: 155 LSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIEETMHELKKNF-----TIV 207
Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312
+ T +++A S++ + + G K Y
Sbjct: 208 IVTHNMQQAVRVSDMTAFFNA--EEVEGGSGGKVGY 241
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 49.0 bits (117), Expect = 4e-06
Identities = 61/237 (25%), Positives = 92/237 (38%), Gaps = 49/237 (20%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK-----NTEKEE----LKPSNVVL-N 108
L+ K + EE E EG + G N K E + P+ VL
Sbjct: 410 LDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIE 469
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-VLGGHPASIYHKTAGSKV 167
+ S V ++ G + GK++L + + GE+W V GG K A K+
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFRIL--------GELWPVYGG----RLTKPAKGKL 517
Query: 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--------HVLKLPN-LER 218
Y+PQ M T+++ + IY S + R S ++L + LER
Sbjct: 518 FYVPQRPYM-TLGTLRDQI-----IYPD--SSEDMKRRGLSDKDLEQILDNVQLTHILER 569
Query: 219 PVKY---------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
+ LSGG+K+R++ HKPQ ILDE V V M+ L +
Sbjct: 570 EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 48.0 bits (114), Expect = 4e-06
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L++ LSGGQ++RL + +P++++LDEP +DP ++ DL+Q G T+
Sbjct: 176 LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTI 234
Query: 276 IMTTQYIEEANDASE-VAFLYKGRII 300
++ T +++A+ S+ F Y+G ++
Sbjct: 235 MIVTHNMQQASRVSDYTMFFYEGVLV 260
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 48.6 bits (116), Expect = 5e-06
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
S VL+N +L +K EF ++G S +GK+TL K + L G++ V G A
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPN-LERPV 220
++G + QE +F +I++ + + I ++ + + +LP V
Sbjct: 529 LRRQMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 221 ----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKG 272
LSGGQ++R++ A++ P+++I DE +D L+ + M + + +G
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-----ICRG 642
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
RTVI+ + + L KG+I
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 47.9 bits (114), Expect = 5e-06
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL + P++I++DEP +DP+ ++ DL++ + + TV++ T +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE-LAEEYTVVVVTHNM 259
Query: 283 EEANDASE--VAFLYKGRIIAQDSPD 306
++A S+ FL G ++ D D
Sbjct: 260 QQAARISDQTAVFLTGGELVEYDDTD 285
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 46.4 bits (110), Expect = 6e-06
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
GA+ GK++LL+ I G+ S G I+ +I + A Y+ L + E+T+
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYY---KNCNI-NNIAKPYCTYIGHNLGLKLEMTVF 88
Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242
E L F+ IY E+++ H KL + L+ LS G ++ ++ I +
Sbjct: 89 ENLKFWSEIYNSAETLY-----AAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143
Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
L +LDE + R + +L+ + G V++++
Sbjct: 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 46.6 bits (111), Expect = 7e-06
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--------LGGHPA- 156
VL N SL V E VL G S +GK+TLL+++ +G+I V L
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 157 ---SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
+ T +GY+ Q L + ++ + + + G+ + + L L
Sbjct: 86 EVLEVRRTT----IGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL 141
Query: 214 PNLER----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
P ER SGG+++R++ + +++LDEP +D R + +L++
Sbjct: 142 P--ERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 48.0 bits (114), Expect = 8e-06
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
LNN S V E ++G + +GK+TL I G+ ++G + + G A++ ++G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--AALIAISSG-- 95
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLF--QMRKYSHVLKLPNLERPVKYL 223
+ G+LT E + G++ G+ E I ++ +++ + K +PVK
Sbjct: 96 ---------LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY--QPVKTY 144
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
S G K RL F I++ P ++++DE D K+ D + F +G+T+ + +
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 284 EAN 286
+
Sbjct: 205 QVK 207
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.6 bits (110), Expect = 1e-05
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL A+ KP+++++DEPC +DP+ ++ +L+ + T+ + T +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNM 209
Query: 283 EEANDASE 290
++A S+
Sbjct: 210 QQATRVSD 217
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 46.5 bits (110), Expect = 1e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL A+ P++++ DEP +DP+ + +L+ K +I+T
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221
Query: 283 EEANDASEVAFLYKGRII 300
+ A + A++Y G +I
Sbjct: 222 QAARVSDYTAYMYMGELI 239
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 46.2 bits (109), Expect = 2e-05
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++ L + P++++LDEP +DP +++ + ++ + +I+T
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
Query: 283 EEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
+ A + A + GR++ + + +S PK
Sbjct: 224 QAARISDRAALFFDGRLVEEGPTEQL---FSSPK 254
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 46.1 bits (109), Expect = 2e-05
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L LSGGQ++RL + KP +++LDEP +DP+ ++ +L+ + + ++
Sbjct: 158 LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSI 216
Query: 276 IMTTQYIEEANDASE-VAFLYKGRIIAQD 303
I+ T +++A S+ AF G ++ D
Sbjct: 217 IIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 46.5 bits (111), Expect = 2e-05
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ E +LG + GKTT +K + G+ +G L KV Y PQ
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--------------KVSYKPQY 409
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPNL-ERPVKYLSGGQKRR 230
++ + T+++ L S + K L L +L ERPV LSGG+ +R
Sbjct: 410 ISPDYDGTVEDLL------RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQR 463
Query: 231 LSFTIAILHKPQLIILDEP 249
++ A+ + L +LDEP
Sbjct: 464 VAIAAALSREADLYLLDEP 482
Score = 34.2 bits (79), Expect = 0.14
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
L+R V LSGG+ +R++ A+L + DEP +D R +++ G+ V
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266
Query: 276 I 276
I
Sbjct: 267 I 267
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++R+ + KP +I+LDEP +DP+ ++ ++L + T+I+ T +
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSM 207
Query: 283 EEANDASE-VAFLYKGRII 300
+A+ S+ AF G +I
Sbjct: 208 HQASRISDKTAFFLTGNLI 226
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 44.3 bits (105), Expect = 2e-05
Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 53/185 (28%)
Query: 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
++ G + +GK+T+L AI LGG S + +G K G
Sbjct: 20 EGSLTIITGPNGSGKSTILDAI----------GLALGGA-QSATRRRSGVKAGC------ 62
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR--LSF 233
+ L F LSGG+K L+
Sbjct: 63 --IVAAVSAELIFT------------------------------RLQLSGGEKELSALAL 90
Query: 234 TIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291
+A+ L ILDE G+DP + + + + + KG VI+ T E A A ++
Sbjct: 91 ILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKL 150
Query: 292 AFLYK 296
+ K
Sbjct: 151 IHIKK 155
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 45.2 bits (107), Expect = 3e-05
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGGQ++RL + +P +I++DEP +DP+ ++ +L+Q + K ++I+ T +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYSIIIVTHNM 226
Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
++A S+ AF G + D D
Sbjct: 227 QQAARISDKTAFFLNGYVNEYDDTD 251
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 46.1 bits (109), Expect = 3e-05
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
E+E+EEEE+E +EE+E +E+EG+ EEEEE E N +EE++ S+
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSS 490
Score = 38.0 bits (88), Expect = 0.010
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD---EGKNTEKEE 99
E+E EEEE E +EEEEE E + EEE E +G E EE
Sbjct: 459 EQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEE 501
Score = 35.3 bits (81), Expect = 0.079
Identities = 18/39 (46%), Positives = 31/39 (79%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
++ EEE+ +EEEEE+E+E ++E+E E +EG++ E+EE
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEE 475
Score = 32.2 bits (73), Expect = 0.73
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+E+E+E +E + E+EE+E+E + + E + ++E +
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Score = 29.9 bits (67), Expect = 3.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+E +E + EEE+E+E ++EEEE+ E + E EE +
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEE 474
Score = 29.9 bits (67), Expect = 3.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 60 EKEKEEEEDEGKEEEEEK---EDEGKKEEEEEADEGKNTEKEELKPSN 104
E+E+EE E + EEE + E +G EE EE E +N+E + +
Sbjct: 470 EEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMS 517
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 44.8 bits (106), Expect = 4e-05
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL--GGHPASIY-------HKTAGSKVG 168
E ++G S +GK+TLL + G G + G +Y + ++ G
Sbjct: 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89
Query: 169 YMPQE----LAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
++ Q L M GE + +G I + WL ++ + ++
Sbjct: 90 FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQD-WLEEVE-----IDPTRID 143
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
+ SGG ++RL ++ +P+L+ +DEP G+D V+ R+ DLL+ V G VI
Sbjct: 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203
Query: 277 MTT 279
+ T
Sbjct: 204 IVT 206
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 45.5 bits (108), Expect = 4e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
SGGQ++R++ A++ KP LIILDEP +D V+ ++ LL+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
LSGG+++R+ +A+L +P+L+I DEP +D V+ ++ LL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL 199
Score = 37.0 bits (86), Expect = 0.017
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155
NVV+ N S ++ E L+G S +GK+T A++ L N SQGEIW G P
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIW-FDGQP 348
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 45.1 bits (107), Expect = 5e-05
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 40 FTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ I LWV +EKE +EE+E ++EE+++E+E ++EEE DE + EKEE
Sbjct: 21 YPIYLWVE---------KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEE--EKEE 69
Query: 100 LKP 102
K
Sbjct: 70 KKK 72
Score = 29.4 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+KEEE DE +E+EE+K+ K +E E N K
Sbjct: 54 TTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.0 bits (104), Expect = 6e-05
Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 26/213 (12%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
LN+ SL E L+G S +GK+TLL++I + +++ G I V GH +IY
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGH--NIYSP 77
Query: 162 TAGS-----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
+ ++G + Q+ F ++I E + + + G+ + L + + S LK ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKS--LKGASI 134
Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
VK LSGGQ++R+ + P++I+LDEP +DP+ ++ + L +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LG 193
Query: 269 VGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
+ T+++ T+ +++A+ S+ F G +I
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 44.9 bits (106), Expect = 7e-05
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
L + + + ++G + GK+TL K GL +GEI +L G +A S+ Y
Sbjct: 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI-LLDGAAV-----SADSRDDYRD 416
Query: 172 QELAMFGELTIKETL--NFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLSGGQK 228
A+F + + + L G +D + Q + + +K+ + LS GQ+
Sbjct: 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476
Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTT---QYIEE 284
+RL+ A L +++ DE DP ++ + +LL +G+T+I+ + QY E
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536
Query: 285 AN 286
A+
Sbjct: 537 AD 538
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 41.3 bits (97), Expect = 8e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
EE ++EEE+K++E K+EEEEEA G
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 30.9 bits (70), Expect = 0.38
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
EKE+E++++E KEEEEE+ G
Sbjct: 80 EKEEEKKKEEEKEEEEEEALAG 101
Score = 30.5 bits (69), Expect = 0.44
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 73 EEEEKEDEGKKEEEEEADEGKNTEKEE 99
+E +KEEE++ +E K E+EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 44.4 bits (106), Expect = 9e-05
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ E ++G + GKTT K + G+ +GE+ K+ Y PQ
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-------------DPELKISYKPQY 408
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK---LPNL-ERPVKYLSGGQKR 229
+ + T+++ L S + S ++K L L ++ VK LSGG+ +
Sbjct: 409 IKPDYDGTVEDLLRSITDDL--GSSYY------KSEIIKPLQLERLLDKNVKDLSGGELQ 460
Query: 230 RLSFTIAILHKPQLIILDEP 249
R++ + L +LDEP
Sbjct: 461 RVAIAACLSRDADLYLLDEP 480
Score = 31.7 bits (73), Expect = 0.91
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
L+R + LSGG+ +R++ A+L DEP +D +R+R+
Sbjct: 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD--IRQRL 249
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 43.8 bits (104), Expect = 1e-04
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
LSGG+++RL+ A+L P ++ILDE +D ++ L + KGRT + +
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRL 530
Query: 283 EEANDASEVAFLYKGRII 300
+A + GR++
Sbjct: 531 STVRNADRILVFDNGRVV 548
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 43.8 bits (103), Expect = 2e-04
Identities = 60/260 (23%), Positives = 107/260 (41%), Gaps = 30/260 (11%)
Query: 99 ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158
+ K S L++ +L + ++G + GKT+L+ A++G + ++ V+ G
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----- 679
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL- 216
V Y+PQ +F T++E + FG + + + H L L P
Sbjct: 680 -------SVAYVPQVSWIFNA-TVRENI-LFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 217 -----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
ER V +SGGQK+R+S A+ + I D+P +D V +++D K
Sbjct: 731 LTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789
Query: 272 GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS-PDGFKSKYSMPKLSDVFYKI------ 324
G+T ++ T + + + +G I + + + KS KL + K+
Sbjct: 790 GKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEV 849
Query: 325 -TNDDGTSSGPPAETSKAEE 343
TND+ P T E
Sbjct: 850 NTNDENILKLGPTVTIDVSE 869
Score = 38.0 bits (88), Expect = 0.013
Identities = 53/247 (21%), Positives = 106/247 (42%), Gaps = 25/247 (10%)
Query: 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156
+ L P VL+ S V E ++G + AGK+++L A+ + + +G I + A
Sbjct: 1245 RPGLPP---VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVA 1301
Query: 157 SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--SHVLKLP 214
+ +PQ +F T++ ++ F D +W R + + + P
Sbjct: 1302 KFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSE--HNDADLWEALERAHIKDVIDRNP 1358
Query: 215 -NLERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
L+ V + S GQ++ LS A+L + ++++LDE VD R L+Q +
Sbjct: 1359 FGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD----VRTDSLIQRTI 1414
Query: 270 G---KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
K T+++ + D ++ L G+++ DSP S+ + F+++ +
Sbjct: 1415 REEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD-----TSAFFRMVH 1469
Query: 327 DDGTSSG 333
G ++
Sbjct: 1470 STGPANA 1476
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 43.8 bits (103), Expect = 2e-04
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
++VL + ++ + E ++G + AGK++L + + ++GEI + G + A I
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----L 216
K+ +PQ+ +F +++ L+ F DE +W + V LP+
Sbjct: 1359 RFKITIIPQDPVLFSG-SLRMNLDPFSQY--SDEEVWWALELAHLKTFVSALPDKLDHEC 1415
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---KGR 273
+ LS GQ++ + A+L K ++++LDE VD +L+Q + +
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD----NLIQSTIRTQFEDC 1471
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK----YSMPK 316
TV+ + D + V L KG + +P + YSM K
Sbjct: 1472 TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518
Score = 41.9 bits (98), Expect = 7e-04
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 43/194 (22%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
LN + + ++G GK++LL A++ + +G + + G
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------S 700
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK----LPNLE----- 217
V Y+PQ+ A +++E + FG + Y VL+ LP+LE
Sbjct: 701 VAYVPQQ-AWIQNDSLRENI-LFGK---------ALNEKYYQQVLEACALLPDLEILPSG 749
Query: 218 -------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
+ V LSGGQK+R+S A+ + + D+P VD V K +++ + G
Sbjct: 750 DRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808
Query: 271 --KGRTVIMTTQYI 282
K +T I+ T I
Sbjct: 809 VLKNKTRILVTHGI 822
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 43.0 bits (102), Expect = 2e-04
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170
+L +KR E L+G + +GK+TL + GL GEI +L G P TA Y
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI-LLDGKPV-----TAEQPEDYR 396
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDE--------SIWLFQMRKYSHVLKLPNLERPVKY 222
A+F + + F + G + WL ++ K +H L+L +
Sbjct: 397 KLFSAVFTDF------HLFDQLLGPEGKPANPALVEKWLERL-KMAHKLELEDGRISNLK 449
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVI 276
LS GQK+RL+ +A+ + +++LDE DP R+ + LL + G+T+
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIF 504
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 43.1 bits (101), Expect = 3e-04
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 66/244 (27%)
Query: 76 EKEDEGKKEEEEEADEGKNTEKEELKPSNV-VLNNCSLVVKRREFFVLLGASSAGKTTLL 134
E D+GKK ++ + + KN +V + + + + + + +G S GK+T+L
Sbjct: 369 ENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428
Query: 135 KAIVGLKNISQGEIWVLGGHP-ASIYHKTAGSKVGYMPQELAMFGELTIKETLNF----- 188
K I L + ++G+I + H I K SK+G + Q+ +F +IK + +
Sbjct: 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSL 487
Query: 189 ----------------------------------FGMIYGMDESIWLFQMRKYSHVLK-- 212
+ +S L +MRK +K
Sbjct: 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDS 547
Query: 213 -LPNLER-----------PVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPC 250
+ ++ + P KY LSGGQK+R+S AI+ P+++ILDE
Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607
Query: 251 VGVD 254
+D
Sbjct: 608 SSLD 611
Score = 36.9 bits (85), Expect = 0.026
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDL 264
K LSGGQK+R++ A+L +P++++LDE +D L+ K + D+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 42.7 bits (100), Expect = 4e-04
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+ EEEE+E +EEEEE+E+E ++EEEEE +E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 42.3 bits (99), Expect = 5e-04
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
+ E+EEEE+E +EEEEE+E+E ++EEEE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890
Score = 42.3 bits (99), Expect = 5e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+ D G EEEE+E+E ++EEEEE +E + E+E +P
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
Score = 32.7 bits (74), Expect = 0.45
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + E ++DE + D G EEEEE +E + E+EE
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
Score = 32.7 bits (74), Expect = 0.47
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E EG E+E E E + EE E+ EG+ K E
Sbjct: 719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHE 754
Score = 31.1 bits (70), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K E E E E E E E EG ++E E + E E+
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Score = 29.6 bits (66), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 61 KEKEEEEDEGK---EEEEEKEDEGKKEEEEEADEGKNTEKE 98
+ K E E EG+ E + E+E EG+ E +E +G+ +E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEE 714
Score = 28.8 bits (64), Expect = 7.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD---EGKNTEKEE 99
E E E E+ G E E+E E E K E E E + E K ++ E
Sbjct: 654 EAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696
Score = 28.8 bits (64), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEA------DEGKNTEKE 98
K E+E EG+ E +E + +G+ E EE EG E E
Sbjct: 690 KGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGE 731
Score = 28.8 bits (64), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E E+E E + E E E E +++ E+E EG+ KE
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQE-GEGEIEAKE 703
Score = 28.8 bits (64), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ E E+E + + E K+DE + +D G + E+EE
Sbjct: 829 KDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE 868
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 40.8 bits (96), Expect = 4e-04
Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 41/173 (23%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L N + + V+ G S +GK+TL+ + + G+ ++ P
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPK---------- 56
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
+ +L +L + L G+ Y L L + + LSGG
Sbjct: 57 --FSRNKLIFIDQL---QFLIDVGLGY-------------------LT-LGQKLSTLSGG 91
Query: 227 QKRRLSFT--IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
+ +R+ + L ILDEP G+ ++ ++++ + G TVI+
Sbjct: 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 40.2 bits (94), Expect = 6e-04
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 60 EKEKEEEEDEGKEEEEEKED--EGKKEEEEEADEGKNTEKEELKPSNVVLNNCS 111
E+E++EEE E E+ E++E+ E ++EEEE+ ++ + + E K N + N+
Sbjct: 54 EEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
Score = 32.9 bits (75), Expect = 0.17
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 61 KEKE---EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
KE E +E+ E EEEEE+++E +E E+ DE + E EE + +
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEED 84
Score = 32.1 bits (73), Expect = 0.31
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
E E +E E+E EDE +EEE+E+++ K+ E++ ++ N++ N
Sbjct: 60 EEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKN 118
Score = 29.8 bits (67), Expect = 1.9
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+KE+ E ++ ++EK+++ ++EEEE+ +E + E E
Sbjct: 31 WDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIE 69
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 40.9 bits (96), Expect = 7e-04
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ E +LG + GKTT +K + G+ +G+I + V Y PQ
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI------------EIELDTVSYKPQY 69
Query: 174 LAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS 232
+ E T+++ L + + ++ K + ++ L+R V LSGG+ +R++
Sbjct: 70 IKADYEGTVRDLL--SSITKDFYTHPYFKTEIAKPLQIEQI--LDREVPELSGGELQRVA 125
Query: 233 FTIAILHKPQLIILDEPCVGVD 254
+ + +LDEP +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 41.0 bits (96), Expect = 8e-04
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-- 168
S ++ + ++G + +GK+TL K + G+ + GEI ++ HP ++ +
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHP--LHFGDYSFRSKRI 89
Query: 169 ---YMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNL-----ERP 219
+ ++ L I + L+F + ++ + ++ L++ L
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ---RRKQIFETLRMVGLLPDHANYY 146
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMT 278
L+ GQK+R++ A++ +P++II DE +D +R ++ +L L++ +G + I
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206
Query: 279 TQYI 282
TQ+I
Sbjct: 207 TQHI 210
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 41.4 bits (98), Expect = 8e-04
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
+EK +++ E+E KE++++ KKEEEEE ++ K E++E +
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 38.4 bits (90), Expect = 0.006
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
EK+K+ + KEEEEE+E E K+EE+EE +E EKEE +
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 38.4 bits (90), Expect = 0.006
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ ++++E +EEE+EK++E K+EEEEEA+E K E+E+
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 37.6 bits (88), Expect = 0.013
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+KEK+++ GK++EEE+E+E +K+EEE+ +E + E+E+ +
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 36.4 bits (85), Expect = 0.025
Identities = 18/39 (46%), Positives = 31/39 (79%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
K+KEEEE+E KE++EE+++E ++E EEE +E + +K+
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 36.1 bits (84), Expect = 0.037
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+K+ + + +EEEEEKE + +++EEEE + + E+EE K
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 35.7 bits (83), Expect = 0.046
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVL 107
+K ++ E +EEEE+++ E +KEEEEE E + E+EE K L
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATL 479
Score = 35.3 bits (82), Expect = 0.064
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 60 EKEKEEEEDEGKEEEEE-KEDEGKKEEEEEADEGKNTEKEELKPS 103
+K K+ E K+ EEE KE + K ++ +E + EKE+ +
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 34.9 bits (81), Expect = 0.079
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
++K E+ E + +EE++EK+ + +++E +E + EK+E +
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 34.1 bits (79), Expect = 0.17
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 58 TLEKEKEEEEDEGKEE-EEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+EK+E++ + ++E+E+E +KE++EE E + E EE K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 30.3 bits (69), Expect = 2.1
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 50 YELT---LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
ELT +E T K+ ++ + E+ E+K +E KKE++++A GK E+EE +
Sbjct: 392 LELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 40.5 bits (95), Expect = 0.001
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGG-- 153
L+ + +++ SL ++R L+G S +GK+ A +G+ + G + +L G
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKP 70
Query: 154 -HPASIYHKTAGSKVGYMPQELAMFGEL-TI----KETLNFFGMIYGMDESIWLFQMRKY 207
P ++ + + M + F L T+ +ET G D +
Sbjct: 71 VAPCALRGRKIAT---IMQNPRSAFNPLHTMHTHARETCLALG-KPADDA-----TLTAA 121
Query: 208 SHVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
+ L N R +K +SGG +R+ +A+L + II DEP +D + + R+ D
Sbjct: 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
Query: 264 LLQVFVGK-GRTVIMTTQYIE-EANDASEVAFLYKGRIIAQDS 304
LL+ V K +++ T + A A +VA + GRI+ Q
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 41.3 bits (97), Expect = 0.001
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 57/171 (33%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM----------- 170
LLG + AGK+TL+K + G GEI + G K+GY
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGL-----------AKGIKLGYFAQHQLEFLRAD 391
Query: 171 -----------PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERP 219
PQEL E +++ L FG FQ K +
Sbjct: 392 ESPLQHLARLAPQEL----EQKLRDYLGGFG-----------FQGDKVTE---------E 427
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
+ SGG+K RL + + +P L++LDEP +D +R+ + + L F G
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG 478
Score = 37.5 bits (87), Expect = 0.015
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 200 WLFQMRKYS--HVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
W + R S H L N LERPV SGG + RL+ A++ + L++LDEP
Sbjct: 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
E +EEEEE+E+E ++E EEEA G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 30.4 bits (69), Expect = 0.54
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
E+E+EEEE+E +EE EE+ G
Sbjct: 78 EEEEEEEEEEEEEESEEEAMAG 99
Score = 30.0 bits (68), Expect = 0.68
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
+E+EEEE+E +EEEEE E+E
Sbjct: 75 AEEEEEEEEEEEEEEEESEEEA 96
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 40.1 bits (94), Expect = 0.001
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EKE EE E+E +EE+EE DE +KE EE+ + N EKE PS
Sbjct: 85 EKEDEESEEENEEEDEESSDENEKETEEKTES--NVEKEITNPS 126
Score = 35.5 bits (82), Expect = 0.030
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
E +E++ + ++E+EE E+E ++E+EE +DE + E EE SNV
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENE-KETEEKTESNV 118
Score = 35.5 bits (82), Expect = 0.036
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 60 EKEKEEEEDEGKEEE--EEKEDEGKKEE--EEEADEGKNTEKEELKPSN 104
E+EKE E KE++ EKEDE +EE EE+ + EKE + +
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTE 115
Score = 35.1 bits (81), Expect = 0.044
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
E EE ++E KE ++ E K + E+E +E + +EE + S+
Sbjct: 59 TAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESS 103
Score = 35.1 bits (81), Expect = 0.048
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+K E+EDE EEE E+EDE +E E+ E K E
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVE 119
Score = 33.9 bits (78), Expect = 0.095
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E E+ EEE+E ++EE E+E + EE+ E++ K KP
Sbjct: 87 EDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKP 129
Score = 33.9 bits (78), Expect = 0.10
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ ++ E +E KEEE+E + KE++ +A++ +EE
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 33.2 bits (76), Expect = 0.19
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 58 TLEKEKEEEEDEG--KEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV 106
+E +EEE E E++E+K D K++EE E + + E+ +
Sbjct: 60 AEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110
Score = 32.0 bits (73), Expect = 0.50
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+E+E + +++E E E KEEE+EA + +KE+ +
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEA--ANSEDKEDKGDA 84
Score = 29.3 bits (66), Expect = 3.3
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
E+E + ++E + +E K+EE+E A+ +K + + +
Sbjct: 45 AADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKED 88
Score = 27.8 bits (62), Expect = 9.0
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKE---DEGKKEEEEEADEGKNTEKEELKPSNV 105
+ + +E + + +EEEKE E K+++ + E + +E+E +
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 39.7 bits (93), Expect = 0.002
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIW--VLGGHPASIYH-------KTAGSKVG 168
E ++G S +GKTTLLK I G G + + G P +Y + ++ G
Sbjct: 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92
Query: 169 YMPQE----LAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
++ Q L M GE + +G I + WL ++ + L ++
Sbjct: 93 FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQDWLEEVE-----IDLDRID 146
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
+ SGG ++RL ++ +P+L+ +DEP G+D V+ R+ DLL+ V + G V+
Sbjct: 147 DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206
Query: 277 MTT 279
+ T
Sbjct: 207 IVT 209
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
LNN SL + E F ++GAS AGK+TL++ I L+ + G + V G
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG 66
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 39.4 bits (92), Expect = 0.002
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----------- 157
S ++ + ++G + +GK+TL K + G+ + GE+ ++ HP
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDYSYRSQRI 89
Query: 158 --IYHKTAGS-----KVGYM---PQEL-----AMFGELTIKETLNFFGMIYGMDESIWLF 202
I+ + S ++ + P L E I ETL G++
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--------- 140
Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
H P++ L+ GQK+RL A++ +P++II DE +D +R ++
Sbjct: 141 -----DHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
Query: 263 DL-LQVFVGKGRTVIMTTQYI 282
+L L++ +G + I TQ++
Sbjct: 190 NLMLELQEKQGISYIYVTQHL 210
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 40.2 bits (94), Expect = 0.002
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 213 LPNLERPVKYLSGGQKRRLSFTIAILH---KPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
LP L RP+ LSGG+ +RL +L KP L +LDEP G+ K + +LQ
Sbjct: 801 LP-LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT 859
Query: 270 GKGRTVIM 277
+G TV++
Sbjct: 860 HQGHTVVI 867
Score = 31.0 bits (70), Expect = 1.7
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 211 LKLPNL--ERPVKYLSGGQKRRLSFTIAILHKPQLI----ILDEPCVGVDPLVRKRMWDL 264
L LP L ER + LSGG++ R + +A +LI ILDEP +G+ P ++ ++
Sbjct: 463 LGLPYLTPERALATLSGGEQERTA--LAKHLGAELIGITYILDEPSIGLHPQDTHKLINV 520
Query: 265 LQVFVGKGRTVIMTT---QYIEEAN---DASEVAFLYKGRIIAQDSPDGF 308
++ +G TV++ Q I A+ D A ++ G ++ SP F
Sbjct: 521 IKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREF 570
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 38.2 bits (89), Expect = 0.003
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
LE +++EE+E EEEEE +E +EEEEE G E+EE
Sbjct: 69 ARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGD 115
Score = 31.2 bits (71), Expect = 0.72
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
LE E E EEE+E EEE E+E+E + +E ++ + + P+
Sbjct: 74 LEQQEEE-ESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTP 123
Score = 28.2 bits (63), Expect = 7.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 47 LLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LL + E E+E++ EE+ +EEEE + +EEEE+ D E
Sbjct: 72 ELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPE 124
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 38.9 bits (90), Expect = 0.003
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 37/205 (18%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L+N ++ + + +++G GK++LL AI+G +G++ + + + S+
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 167 ----VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL------ 216
V Y Q+ + T++E + F S F ++Y V +L
Sbjct: 77 NRYSVAYAAQKPWLLNA-TVEENITF--------GSP--FNKQRYKAVTDACSLQPDIDL 125
Query: 217 ----------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD--L 264
ER + LSGGQ++R+ A+ ++ LD+P +D + + +
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 265 LQVFVGKGRTVIMTT---QYIEEAN 286
L+ RT+++ T QY+ A+
Sbjct: 185 LKFLQDDKRTLVLVTHKLQYLPHAD 209
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 39.5 bits (92), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+P+ LSGGQK R++F KP +++LDEP
Sbjct: 623 QPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654
Score = 29.8 bits (67), Expect = 3.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+ K SGG + R++ A+ +P L++LDEP
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEP 371
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 36.5 bits (85), Expect = 0.004
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+++EEE+E+E K+E EEEA G
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 33.8 bits (78), Expect = 0.039
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEAD 90
+E++EE+E+E +KEE EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEA 97
Score = 31.5 bits (72), Expect = 0.21
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
EK++EEEE+E KEE EE+ G
Sbjct: 79 EKKEEEEEEEEKEESEEEAAAG 100
Score = 30.7 bits (70), Expect = 0.40
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
E+++EE+E +EE+EE E+E
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEA 97
Score = 30.7 bits (70), Expect = 0.48
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEG 92
EE++E+E+E +++EE E +
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
+EK+EEE+E +E+EE +E+
Sbjct: 77 AEEKKEEEEEEEEKEESEEEAA 98
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 39.3 bits (92), Expect = 0.005
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 43/192 (22%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGS 165
L+N +L V ++G++ GKT+L+ A++G L S + + G
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------- 679
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL-- 223
V Y+PQ +F T+++ + F G F +Y + + L+ + L
Sbjct: 680 TVAYVPQVSWIFNA-TVRDNILF-----GSP-----FDPERYERAIDVTALQHDLDLLPG 728
Query: 224 -------------SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD--LLQVF 268
SGGQK+R+S A+ + I D+P +D V ++++D +
Sbjct: 729 GDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL 788
Query: 269 VGKGRTVIMTTQ 280
GK R V++T Q
Sbjct: 789 RGKTR-VLVTNQ 799
Score = 31.6 bits (72), Expect = 0.98
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 99 ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158
EL P VL+ S + E ++G + AGK+++L A+ + + +G I + G +
Sbjct: 1250 ELPP---VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF 1306
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--- 215
+G +PQ +F T++ L+ F D +W R + + N
Sbjct: 1307 GLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE--HNDADLWESLERAHLKDVIRRNSLG 1363
Query: 216 LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPC----VGVDPLVRK 259
L+ V + S GQ++ LS A+L + ++++LDE V D L++K
Sbjct: 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.0 bits (85), Expect = 0.006
Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 53/179 (29%)
Query: 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
E +++G +GKTTL +A+ G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG----------------------------- 31
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTI 235
G+IY E I + + L L + SG + RL+ +
Sbjct: 32 --------------GVIYIDGEDI----LEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK------GRTVIMTTQYIEEANDA 288
A KP ++ILDE +D + L ++ + TVI+TT ++ A
Sbjct: 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPA 132
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 38.5 bits (90), Expect = 0.007
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 38/254 (14%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLL 123
E+E+DEGK E + + + GK P+ L N + + + L+
Sbjct: 325 EQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV------PA---LRNINFKIPAGKTVALV 375
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMF----- 177
G S +GK+T+ + +I +GEI +L GH Y + ++V + Q + +F
Sbjct: 376 GRSGSGKSTIANLLTRFYDIDEGEI-LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434
Query: 178 --------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKR 229
+ + ++ M Y MD F + K + L E V LSGGQ++
Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMD-----F-INKMDNGLDTVIGENGVL-LSGGQRQ 487
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW---DLLQVFVGKGRTVIMTTQYIEEAN 286
R++ A+L ++ILDE +D + + D LQ K RT ++ +
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIE 543
Query: 287 DASEVAFLYKGRII 300
A E+ + G I+
Sbjct: 544 KADEILVVEDGEIV 557
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 36.1 bits (83), Expect = 0.007
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+EEEE + +EEEE E E ++ EEEE EG
Sbjct: 51 MEEEEEVDEDDEEEEGEGEEEEGEEEEETEG 81
Score = 32.6 bits (74), Expect = 0.087
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
E+E E EE+EG+EEEE + GK+ E+E D+ + ++
Sbjct: 63 EEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQ 100
Score = 32.6 bits (74), Expect = 0.10
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E + E EE+E +E++E+E+ +EEE E +E
Sbjct: 46 EGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEE 77
Score = 32.2 bits (73), Expect = 0.14
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+ E EEEE+ +++EEE+ + ++E EEE + T K
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGK 85
Score = 31.5 bits (71), Expect = 0.26
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E +E +DE +EEEE ED+ ++E E E +EG+ E+ E
Sbjct: 40 EENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Score = 30.7 bits (69), Expect = 0.49
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+E ++E +E +E +E+ E+E + EEEE +E + TE K
Sbjct: 44 AQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGK 85
Score = 29.9 bits (67), Expect = 0.78
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 59 LEKEKEEEED---EGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ +EKE ++ G E EE EG E EEE + ++ E+EE
Sbjct: 22 VVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEE 65
Score = 29.9 bits (67), Expect = 0.88
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+E+ +E+DE +E E E+E+ ++EE E A + E EE
Sbjct: 53 EEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEE 92
Score = 29.5 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
+E +E + + EEEE+ DE +EEE E +E + E+EE
Sbjct: 37 NENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEET 79
Score = 29.5 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG--KKEEEEEADEGKNTEKE 98
+ E+EE E E +E EEE+E EG K E+ ++ T+K+
Sbjct: 60 DDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQ 100
Score = 28.0 bits (62), Expect = 3.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E EEEE E +EE E + E+EE+ E K + +E
Sbjct: 65 EGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQKTDE 104
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 37.7 bits (88), Expect = 0.007
Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 51/211 (24%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYH 160
N +L +L + + E ++G + +GK+TL K I G I +G+I G SI
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG---ESILD 75
Query: 161 KTAG--SKVGYM-----PQELA----------------MFGELTIKETLNFFGMI----- 192
+ +G P E+ F L + L F +I
Sbjct: 76 LEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 193 -YGMDESIWLFQMRKYSHVLKLPNLERPVKY-LSGGQKRRLSFTIAILHKPQLIILDEPC 250
GMD S L R V SGG+K+R L +L ILDE
Sbjct: 136 LVGMDPSF----------------LSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179
Query: 251 VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
G+D K + + + + ++I+ T Y
Sbjct: 180 SGLDIDALKIIAEGINKLMTSENSIILITHY 210
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.9 bits (81), Expect = 0.007
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 223 LSGGQKRRLSFTIAIL-------------HKPQLIILDEPCVGVDPLVRKRMWDLL 265
LSGG+K+ L +A+ P+LI LDE +D + + +LL
Sbjct: 23 LSGGEKQVL-AYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELL 77
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 38.1 bits (88), Expect = 0.008
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
T+E+E++EE E +EE EE E K E++ + + + +KEE +P
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEP 154
Score = 31.9 bits (72), Expect = 0.76
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
E+ +E EE EG + E+K D EE ++ ++ E+EE + N
Sbjct: 121 EEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEEN 170
Score = 28.5 bits (63), Expect = 8.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
LE+ K++ E+ K EEE++ +K+EE + + EK LK
Sbjct: 216 LEELKKKREERRKVLEEEEQR--RKQEEADRKSREEEEKRRLKE 257
Score = 28.5 bits (63), Expect = 8.3
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E+ + E++ + + EE +KE++ + EEEE + + E
Sbjct: 123 REEVEETEGVTKSEQKNDWRD--AEECQKEEKEPEPEEEEKPKRGSLE 168
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 38.4 bits (90), Expect = 0.008
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 44/165 (26%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
++ + S V+R + L+G + GKTTLLK ++G G I
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC----------- 378
Query: 162 TAGSK--VGYMPQELAMFG-ELTI-------KETLNFFGMIYGMDESI------WLFQ-M 204
G+K V Y Q A E T+ K+ + M+ G + +LF
Sbjct: 379 --GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV----MVNGRPRHVLGYLQDFLFHPK 432
Query: 205 RKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
R + PVK LSGG++ RL L L+ILDEP
Sbjct: 433 RAMT----------PVKALSGGERNRLLLARLFLKPSNLLILDEP 467
Score = 31.8 bits (73), Expect = 0.82
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 44/176 (25%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI------------------ 148
L+N L ++ E L+G + AGK+TL+K + G + G I
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRN 78
Query: 149 -------WVLGG--HPAS---IYHKTAGSKVGYMPQELAMFGEL-TIKETLNFFGMIYGM 195
+V G A YH + V P E EL ++E L+
Sbjct: 79 VEGTVYDFVAEGIEEQAEYLKRYHDIS-HLVETDPSE-KNLNELAKLQEQLDHHN----- 131
Query: 196 DESIWLFQMRKYSHVLKLPNL--ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+W + R + VL L + + LSGG R+ + A++ P +++LDEP
Sbjct: 132 ---LWQLENR-INEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 38.5 bits (89), Expect = 0.009
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLL 123
++++++ E+++++ED+ ++EEEEE +G + E EE + S V K F +
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDCFKFIE 213
Query: 124 GASSAG 129
+
Sbjct: 214 AGAGDD 219
Score = 35.8 bits (82), Expect = 0.060
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE------GKKEEEEEADEGKNTEKEELKPSN 104
+++++E++D+ +++EEE+E+E ++EE+E E EK E+ ++
Sbjct: 157 DEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
Score = 34.3 bits (78), Expect = 0.19
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNC 110
E E E+++DE +EEEE+E+E K ++E +E + E + S V +C
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDC 208
Score = 29.6 bits (66), Expect = 4.1
Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
L +E D ++++++++ ++EE+ +E + E EE+K
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEE-EEIKG 182
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 37.9 bits (88), Expect = 0.009
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + EE + +EE+ K++E +K+++E+ADE K +++
Sbjct: 391 ETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Score = 30.1 bits (68), Expect = 2.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
K KEE+ + + E+++KE + +E+ + DE K
Sbjct: 400 AKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 29.4 bits (66), Expect = 4.6
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K+ ++ + E ++E + + E + + ++ K E E+
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEK 414
Score = 29.4 bits (66), Expect = 4.7
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEE---EADEGKNTEKEE 99
L+ ++ + E + +E E K +EE+ E +E K E+ +
Sbjct: 378 LQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQAD 421
Score = 28.6 bits (64), Expect = 7.3
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E++ ++EE+E K++E+ ED+ K++++E
Sbjct: 404 EEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 37.5 bits (87), Expect = 0.010
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139
+L + SL ++ LLG + AGK+TLLKA+ G
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 37.0 bits (86), Expect = 0.011
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LEK+ +E E E +EE+EK++E ++EEEEE ++ + + ++
Sbjct: 155 MLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 35.5 bits (82), Expect = 0.035
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+K KE E ++ EE+E+ E+E ++EEEE+ D + + ++
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 35.5 bits (82), Expect = 0.036
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+ ++E+E+DE +EEEEE+EDE +++++ D+ N E
Sbjct: 166 EDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAEN 204
Score = 35.1 bits (81), Expect = 0.041
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 39 KFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
+L +L LE +++E E++E+E +EEEEE ED +++++ D
Sbjct: 148 DIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
Score = 35.1 bits (81), Expect = 0.051
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L E+EE+ DE E+K E + E+ +E DE E+EE
Sbjct: 141 LFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEE 181
Score = 34.7 bits (80), Expect = 0.056
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E++ E + E+ ++EDE +EEEEE +E
Sbjct: 154 SMLEKKLKELEAEDVDEEDEKDEEEEEEEEE 184
Score = 30.1 bits (68), Expect = 1.8
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
LE E E E+ ++E +++EEE+E+E +++E+ + D+
Sbjct: 155 MLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 30.1 bits (68), Expect = 2.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EK E+ + E E+ ++E +K+EEEE +E + E +
Sbjct: 150 DEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 37.5 bits (87), Expect = 0.013
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
LY L C++L EE D ++ E EDE + E +EE +
Sbjct: 530 LYRL---CWSLRNSTEERIDLDADDWTEDEDENEMETDEERKK 569
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 35.4 bits (80), Expect = 0.014
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
T E K+E EDE K E+ E EDE K E+ E DE K + E
Sbjct: 55 THEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPE 95
Score = 31.1 bits (69), Expect = 0.35
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+ EK E EDE K E+ E EDE K E+ E DE
Sbjct: 68 KPEKPENEDEKKPEKPENEDEKKPEKPENEDE 99
Score = 27.7 bits (60), Expect = 6.9
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
+ EK E EDE K E+ E EDE + E+ + +D+ K
Sbjct: 79 KPEKPENEDEKKPEKPENEDEKEFEDSDASDKKK 112
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 36.4 bits (85), Expect = 0.014
Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 116 RREFFVLLGASSAGKTTLLKAIV----GLK-NISQGEIWVLGGHPASIYHKTAGSKVGYM 170
+++G + AGKTT+++A+ G S+G G H + + +
Sbjct: 21 FSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKG-----GAHDPKLIREGEVRAQVKL 75
Query: 171 PQELAMFGELTIKETLNFF-GMIY-GMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQK 228
E A + TI +L +I+ ES W L SGG+K
Sbjct: 76 AFENANGKKYTITRSLAILENVIFCHQGESNWP--------------LLDMRGRCSGGEK 121
Query: 229 RRLSFTI------AILHKPQLIILDEPCVGVDP 255
S I ++ LDEP +D
Sbjct: 122 VLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 36.8 bits (86), Expect = 0.016
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
L +P LSGG+ +R+ L K L ILDEP G+ K++ ++LQ V K
Sbjct: 163 LGQPATTLSGGEAQRIKLA-KELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221
Query: 272 GRTVI 276
G TV+
Sbjct: 222 GNTVV 226
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 36.2 bits (84), Expect = 0.017
Identities = 8/45 (17%), Positives = 29/45 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+K K++++ + +++++K+D+ +K++E+EA++ + +
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 35.4 bits (82), Expect = 0.027
Identities = 6/43 (13%), Positives = 27/43 (62%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+K K +++ K+++++K+ + K++++ + + +++L+
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 34.3 bits (79), Expect = 0.058
Identities = 8/44 (18%), Positives = 26/44 (59%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+K+K++++D+ +++++K ++ ++E E+ E E +
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 31.2 bits (71), Expect = 0.72
Identities = 12/52 (23%), Positives = 31/52 (59%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
EL E ++KE EE++ ++++ K+ + K +++++ + +EK++ K
Sbjct: 66 ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 30.8 bits (70), Expect = 0.93
Identities = 8/45 (17%), Positives = 27/45 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+K+K++++ + K++++ ++ + K+ E++ D K+ + S
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
Score = 30.8 bits (70), Expect = 0.94
Identities = 9/60 (15%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 50 YELTLECYTLEKEKE------EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E + L +E E EE+ + K ++++ + + K+++++ D+ + +++ +
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 28.5 bits (64), Expect = 5.1
Identities = 6/40 (15%), Positives = 25/40 (62%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+K+ ++++D+ ++++E++ ++ ++ + E +T E
Sbjct: 100 DKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSEL 139
Score = 28.5 bits (64), Expect = 5.5
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 60 EKEKEEEEDEGKEEEE-EKEDEGKKEEEEEADEGKNTEKEELKP 102
+K+K++++ + K E++ EKE E K E+ ++ + ELKP
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKP 141
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 36.6 bits (85), Expect = 0.018
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
LSGG +R+ +AI +P+L+I DEP +D ++ ++ +LL
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL 196
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 36.6 bits (85), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 213 LPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
LPNL R SGGQ +R+ A++ +P+LII DEP +D ++ ++ +LLQ
Sbjct: 151 LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205
Score = 31.6 bits (72), Expect = 0.86
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLG 152
G S GK+T +AI+GL + GE+ LG
Sbjct: 54 GESGCGKSTFARAIIGLVKATDGEVAWLG 82
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 34.1 bits (78), Expect = 0.022
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
LE E+ EE DE EEEEE+E++ + E DE E E+L
Sbjct: 55 LEAEESEENDEE-EEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 27.9 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E ++E+EEEE+E E E E + ++ EEE D
Sbjct: 59 ESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 27.1 bits (60), Expect = 6.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
+K E EE E +EEEE+E+E + E E E +EE+
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEI 92
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 34.3 bits (79), Expect = 0.023
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+ E +E +E+E ++E EEE+D+
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 32.4 bits (74), Expect = 0.11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E E E EEE+++E +EE ++
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDDM 103
Score = 31.2 bits (71), Expect = 0.28
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
E E DE +EEE+E+E EEE D+
Sbjct: 78 EAAAEADEAEEEEKEEE-----AEEESDDDM 103
Score = 28.5 bits (64), Expect = 3.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
E ++ EEE++ +E EEE +D+
Sbjct: 82 EADEAEEEEKEEEAEEESDDDM 103
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
E EEEE E + EEE +D
Sbjct: 83 ADEAEEEEKEEEAEEESDDDML 104
Score = 27.0 bits (60), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE 80
E +E E+E KEEE E+E +
Sbjct: 80 AAEADEAEEEEKEEEAEEESD 100
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 36.2 bits (84), Expect = 0.023
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNC-SLVVKRR 117
LEK K+E + EE+E+E+E K EEE+A E EE+ N +LN VKRR
Sbjct: 151 LEKIKKE-----RAEEKEREEEEKAAEEEKARE------EEILTGNPLLNTSGDFKVKRR 199
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 36.9 bits (86), Expect = 0.026
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDE 248
LSGGQ++RL A++ KP++++ DE
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDE 614
Score = 35.7 bits (83), Expect = 0.055
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG 139
++L++ SL ++ EF ++G S +GK+TLL+ ++G
Sbjct: 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 36.6 bits (85), Expect = 0.026
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
L+N +L V+ L+G + AGK+TLLK + G+ G I G
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG 59
Score = 35.5 bits (82), Expect = 0.057
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
+K P + LSGG ++++ +L +P++++LDEP G+D + ++ L+
Sbjct: 380 VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 271 KGRTVIMTTQYIEE 284
K + +I+ + + E
Sbjct: 440 KDKGIIIISSEMPE 453
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 36.2 bits (84), Expect = 0.027
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E EEE+DE ++ +E DE EE+EE + + E
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 34.6 bits (80), Expect = 0.081
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LEK KEEE + + E+ + D+ EEEE E +E
Sbjct: 75 LEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 34.2 bits (79), Expect = 0.12
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E ++E + E+EE++DE K+ +E++DE + E EE
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEA 161
Score = 32.3 bits (74), Expect = 0.47
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E E+E++E K+ +E+ ++E +E+EEEA E + E E+ K S
Sbjct: 133 EDEEEKDEAA-KKAKEDSDEELSEEDEEEAAEEEEAEAEKEKAS 175
Score = 32.3 bits (74), Expect = 0.53
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E K+ +ED +E EE E+E +EEE EA++ K +E
Sbjct: 140 EAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASE 176
Score = 31.9 bits (73), Expect = 0.68
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+KE E + E +EE++E + K++ +EE E E E + +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Score = 30.8 bits (70), Expect = 1.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 47 LLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
LL E E E+ E D+ +EEEE E E E+E+ DEG
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVE---EDEDSDDEG 116
Score = 30.4 bits (69), Expect = 1.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
LE + E+ K++E ++G E +++ ++E + E EE+ D E
Sbjct: 75 LEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGE 117
Score = 30.4 bits (69), Expect = 2.1
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
++EEE + ++ +++ + + EE+E + + E E K
Sbjct: 127 IESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 34.8 bits (81), Expect = 0.030
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 119 FFVLLGASSAGKTTLLKAI 137
V+ G S GKTTLL+A+
Sbjct: 1 RIVITGGPSTGKTTLLEAL 19
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 35.5 bits (82), Expect = 0.031
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEA-DEGKNTEKEELKPSNVVLNN 109
+ E E++K +EED EE E++E EE E E E +LK N L N
Sbjct: 16 DCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLEN 75
Score = 32.8 bits (75), Expect = 0.24
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ + E E++ +E E KE++ KEE+ E +E + E E
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIE 46
Score = 30.9 bits (70), Expect = 0.90
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K + EED KE E ++ED+GK+E+ E + K E+
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIED 47
Score = 30.1 bits (68), Expect = 1.6
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEE--EEEADEGKNTEKEELK 101
EKE ++ + E EE+ KE+E K+E+ +EE E + EKEE+
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEII 45
Score = 28.6 bits (64), Expect = 6.1
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV 106
++E +D E EE + + +EE+ + ++ E EE++ ++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEII 45
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 35.4 bits (82), Expect = 0.031
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
+ K E+ K+++ ++ + + ++ EA+E KN E + K + + N
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
Score = 28.4 bits (64), Expect = 6.2
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
K+++ E K++E+ ++ E ++ + EE K E N+V +
Sbjct: 21 RKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 36.1 bits (83), Expect = 0.033
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
+ EE ED+ E K + + E+ EE++E KN E+ L
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGL 334
Score = 33.0 bits (75), Expect = 0.33
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+ + E E E+ EE E+E +EE + +GK +K
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Score = 31.9 bits (72), Expect = 0.72
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ E+ E+ +E+ EE+ KK ++ + +GK ++
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK 353
Score = 31.9 bits (72), Expect = 0.79
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
K + E++++ +E EEEK +E ++ K K
Sbjct: 310 AKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 31.1 bits (70), Expect = 1.4
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E E+E+ E+EG ++ K+ + K ++ D+ + +
Sbjct: 322 ESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGD 360
Score = 31.1 bits (70), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E E++ED + EEE+ E+EG ++ + + +K L
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 30.3 bits (68), Expect = 2.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E + E E E++++ E +EE+ E + G + + ++LK
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLK 342
Score = 28.8 bits (64), Expect = 7.9
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+K E + + E++E +E ++E+ EE K+ K
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKL 344
Score = 28.8 bits (64), Expect = 7.9
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 59 LEKEKEEEEDEGKE------------EEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + ++ +DEG+E + EE+ED+ E + + ++ + EE
Sbjct: 270 DEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEE 322
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 35.7 bits (83), Expect = 0.034
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTT 279
SGG ++RL ++ P+L+ +DEP G+D V+ R+ DLL+ V + G V++ T
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 35.3 bits (82), Expect = 0.034
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 38/138 (27%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ F++ G + AGK+T+L AI + L Y KT +
Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAIT----------YAL-------YGKTPRYGRQENLRS 67
Query: 174 LAMFGELTIKETLNFF--GMIY------GMDESIWLFQMRKYSHVLKLPN------LERP 219
+ GE T + + F G Y G+D +++ ++ LP L RP
Sbjct: 68 VFAPGEDTAEVSFTFQLGGKKYRVERSRGLDY-------DQFTRIVLLPQGEFDRFLARP 120
Query: 220 VKYLSGGQKRRLSFTIAI 237
V LSGG+ S ++A+
Sbjct: 121 VSTLSGGETFLASLSLAL 138
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 36.5 bits (85), Expect = 0.035
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 215 NLERPVKYLSGG--QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+L R LSGG Q+ RL+ I L +LDEP +G+ +R+ + L+ G
Sbjct: 481 SLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLG 540
Query: 273 RTVIMT---TQYIEEAN---DASEVAFLYKGRIIAQDSPDGFKSK 311
T+I+ I A+ D A + G ++A +P+ +
Sbjct: 541 NTLIVVEHDEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILAN 585
Score = 35.0 bits (81), Expect = 0.100
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL 238
++T++E FF + + + L L +P LSGG+ +R+ +
Sbjct: 790 DMTVEEAYEFFEAVPSISRKLQTL----CDVGLGYIRLGQPATTLSGGEAQRIKLAKELS 845
Query: 239 HK---PQLIILDEPCVGV---DPLVRKRMWDLLQVFVGKGRTVIM 277
+ L ILDEP G+ D ++K + ++LQ V KG TV++
Sbjct: 846 KRSTGRTLYILDEPTTGLHFDD--IKKLL-EVLQRLVDKGNTVVV 887
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 36.2 bits (84), Expect = 0.035
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E++ EEEE E +EEEEE+E+ + E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.0 bits (81), Expect = 0.086
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 56 CYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
C + E+++EE+E ++EEEE+E+E +E E E
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPE 371
Score = 34.3 bits (79), Expect = 0.12
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
Y E E E E+E +EEE + DE + EEEE +E + KEE
Sbjct: 161 YVAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEE 203
Score = 33.9 bits (78), Expect = 0.19
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
++K+EEE++ EEEEE+E+E EE E +EG
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEE---PEEPEPEEG 373
Score = 29.3 bits (66), Expect = 4.8
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADE 91
E K+EEEE+EDE ++EEEEE +E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEE 367
Score = 28.9 bits (65), Expect = 7.4
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
E E E+EEEE+E E +EE E E ++EEE E
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPE 197
Score = 28.5 bits (64), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
EEEE+E +EEE + DE ++ + E E +
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVR 317
Score = 28.5 bits (64), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E + +EEE+E E+E ++EEE E E L P
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPE-PEEGPPLLTP 379
Score = 28.5 bits (64), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEE 88
EE+E +EEEEE + + EE +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPD 310
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 35.6 bits (82), Expect = 0.036
Identities = 41/199 (20%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
L++ SL + L+G + +GK+TL I G + + G++ G S+ +AG
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--EVSVIAISAG-- 95
Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNL----ERPVK 221
+ G+LT E + F + G +++ + +++ L +PVK
Sbjct: 96 ---------LSGQLTGIENIEFKMLCMGFKRK----EIKAMTPKIIEFSELGEFIYQPVK 142
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
S G + +L F+I I P ++++DE D ++ D + F + +T+ +
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202
Query: 282 IEEAND-ASEVAFLYKGRI 299
+ + +++A++ G++
Sbjct: 203 LGQVRQFCTKIAWIEGGKL 221
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 33.0 bits (76), Expect = 0.037
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEAD 90
EEE+EG++ E E E++ +++++++ D
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.4 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 68 DEGKEEEEEKED---EGKKEEEEEADE 91
D EEEEE ED E +++EEE+ D+
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDD 71
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 35.9 bits (83), Expect = 0.037
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 59 LEKEKEEEEDEGKEEE-EEKEDEGKKEEEEEADEGKNTEKEE 99
E+ E+E++E ++ E +E+EG+ EEE + ++ E
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Score = 34.3 bits (79), Expect = 0.14
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EE DE ++EEEE+ + +EEE E E + ++ E S
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSS 406
Score = 33.9 bits (78), Expect = 0.18
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
++ E+ +E+++ EEEE++ DE ++EE E+++E + +E+
Sbjct: 363 DPIDFEEVDEDED--EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407
Score = 33.2 bits (76), Expect = 0.25
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++++EEE+ + EEEE ED ++ + D + +
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
Score = 32.8 bits (75), Expect = 0.41
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E EEEE E EEE+ ++ ++E + ++G + +
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSD 411
Score = 32.4 bits (74), Expect = 0.45
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++++++EEE++ +E EE+E E +EE ++ E ++E
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Score = 32.4 bits (74), Expect = 0.48
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E E+EE ED +E + +ED + + + ++ +E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 31.6 bits (72), Expect = 0.88
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E EEEE E EEE + E E + K +
Sbjct: 382 SDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421
Score = 30.9 bits (70), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 60 EKEKEEEEDEGKEEEEE-KEDEGKKEEEEEADEGKNTEKEE 99
++E+E+ DE +EEE E E+EG + E+ + E + +
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415
Score = 30.5 bits (69), Expect = 2.1
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
+ + E +E+E++E+E + +E EE + + E+ +
Sbjct: 358 RRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 30.1 bits (68), Expect = 2.7
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
E+++ +E +E + E+ E+E +E+ E K
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
E E+EE+ + EEEE ++ E + + E +++ +
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESK 419
Score = 28.9 bits (65), Expect = 5.8
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
++ +EEE ++ +EE + ++G E + ++ ++ S+
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASD 427
Score = 28.2 bits (63), Expect = 9.6
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
E E ++ EEE+ EEE + E +D G ++E + K S
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 33.6 bits (76), Expect = 0.045
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
LE E++ + D +EE+++ EDE +E+++ D+
Sbjct: 6 LEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDD 38
Score = 31.3 bits (70), Expect = 0.28
Identities = 10/39 (25%), Positives = 26/39 (66%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
TL E++ + + DE +++++E E++ ++++E+ DE
Sbjct: 2 TLHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.7 bits (66), Expect = 0.93
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
TL + EE+ + +EEE +D+ +E+++E D+ + E
Sbjct: 2 TLHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.4 bits (65), Expect = 1.1
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E EED + +EE++D+ E+EE+ DE + + +E+
Sbjct: 7 EGEEDSDSDSDEEEDDD--DEDEEDDDEDDDEDDDEV 41
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 32.8 bits (75), Expect = 0.046
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E EE ED+ +E+++ +D+ +++++ D+ ++ E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 31.7 bits (72), Expect = 0.14
Identities = 8/33 (24%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE-EADE 91
E+ +++++DE +++++K+D+ ++++ E DE
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 31.3 bits (71), Expect = 0.14
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+E E+ E++D+ ++++++ + + K +++++ DE
Sbjct: 45 IEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 29.8 bits (67), Expect = 0.54
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 69 EGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EG+E E++ +DE +++++ D+ + + ++
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDD 76
Score = 29.8 bits (67), Expect = 0.66
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E EE E +++E+ +D+ K ++++ D+ + E +E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDK-DDKDDDDDDDDEDDE 80
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 35.5 bits (82), Expect = 0.050
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
SGG ++R+ +A+L +P+L+I DEP +D V+ ++ LL
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL 204
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 34.8 bits (80), Expect = 0.062
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+E++D+G+EEE D ++ + ++E ++ E E
Sbjct: 233 DEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 32.9 bits (75), Expect = 0.33
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ E+ EDE +E+E +D+G EEEE +E +
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQG--EEEESGSSDSLSEDSD 255
Score = 29.4 bits (66), Expect = 3.8
Identities = 7/41 (17%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 60 EKEKEEEEDE-GKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ E+E+D E++++ E+E + +++ + +E
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEM 261
Score = 29.0 bits (65), Expect = 5.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 60 EKEKE----EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ E E E+ED+ + EEEE E+ +A + E
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Score = 28.2 bits (63), Expect = 7.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
++ +E ++ + E+ EDE +E+E+ D+G+ E
Sbjct: 206 MDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEE 243
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 35.0 bits (81), Expect = 0.067
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++E EE E EEEEE++D + E+E+E DE + E+++
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDD 314
Score = 35.0 bits (81), Expect = 0.072
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKN 94
+ E+EEEED+ E E+E E++ +EEEE+ DEG
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 28.9 bits (65), Expect = 5.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
L EL + E+E + E E ++EE+E E+E + ++E +
Sbjct: 279 LEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 28.1 bits (63), Expect = 8.9
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LE+ E+ E+E +E++ + ++ +E+E+E +E + E ++
Sbjct: 279 LEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 33.8 bits (78), Expect = 0.075
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E+E+EEE + + +EEE+ DE ++E + K E E
Sbjct: 102 EEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 33.0 bits (76), Expect = 0.12
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGK--KEEEEEADEGKNTEKEELK 101
L+K+++EEE+E + E EE ++E + + E+E + K ++ E +
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 30.3 bits (69), Expect = 0.95
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
L +K+E+E+E +EE E +E + +++ +E ++ K E + N
Sbjct: 94 LGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRREN 139
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 33.4 bits (77), Expect = 0.077
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ KEK + E + +E++ E E K EE+A+ ++EL+
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELE 59
Score = 32.2 bits (74), Expect = 0.20
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
EK++EE++ E ++ + +E + E E+ ++ + EL
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.1 bits (81), Expect = 0.078
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 218 RPVKYLSGGQKRRLSFTIAI--------LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
RP+K LSGG++ S + + + +L+ LDEP +D +++ ++L+ +
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 270 GKGRTVIMTT 279
GR +I+ +
Sbjct: 871 SDGRQIIIIS 880
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 35.2 bits (81), Expect = 0.082
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 45/230 (19%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-----KNISQGEIWV---------LGGH 154
N S ++R E ++G S +GK+ A++ L + ++ + L
Sbjct: 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93
Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLN-FFGMIYGMDESIWLFQ-------MRK 206
A+ G+ + + QE +T +LN F + + ESI L Q M +
Sbjct: 94 SAAQMRHVRGADMAMIFQE-----PMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 207 YSHVL---KLPN----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259
+L ++P L R LSGG ++R+ +A+ +P ++I DEP +D ++
Sbjct: 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205
Query: 260 RMWDLLQVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDS 304
++ L++V + + M +I A A V +Y+G + S
Sbjct: 206 QILQLIKVL---QKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Score = 34.4 bits (79), Expect = 0.13
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 48/212 (22%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PAS-----------IYHK 161
E L+G S +GK+T +A++ L GEI + G I+
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 162 TAGS-----KVGYMPQELAMFGELTIKETLNFFGMIYGMDES---IWLFQM--RKYSHVL 211
S VG +I E L G++ G + WL + H
Sbjct: 410 PYASLDPRQTVGD-----------SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 212 KLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL---LQVF 268
+ P+ SGGQ++R+ A+ P++II DE +D +R ++ +L LQ
Sbjct: 459 RYPH------EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
G I + E + VA +Y G+I+
Sbjct: 513 FGIAYLFISHDMAVVE-RISHRVAVMYLGQIV 543
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.1 bits (80), Expect = 0.083
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+++K E + + EE +K +E KK+E EE + + +K E
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
Score = 33.2 bits (75), Expect = 0.33
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEE--ADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
K K EE + EE+++K +E KK EE+E A E E EE K + + + K+ E
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Score = 33.2 bits (75), Expect = 0.35
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 60 EKEKEEEEDEGKEEEE---EKEDEGKKEEEE--EADEGKNTEKEELK 101
+EK++ E+ K EEE + +E KK EE+ +A+E K E++E K
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 33.2 bits (75), Expect = 0.41
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELKPSNV 105
+K+ +E + K EE++K DE KK EE ++ADE K +E K
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Score = 32.8 bits (74), Expect = 0.43
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK-EEEEEADEGKNTEK----EELK 101
E +K+ +E + E ++K DE KK EE ++ADE K E+ +E K
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Score = 32.8 bits (74), Expect = 0.44
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEE---ADEGKNTEKEELK 101
E +K+ EE + EE+E+K E K+E EE A+E K E EE K
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 32.8 bits (74), Expect = 0.45
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE---EADEGKNTEKEELK 101
E +K EE + + EE++K +E KK EEE +A+E K +E+ K
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
Score = 32.8 bits (74), Expect = 0.51
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE---EADEGKNTEKEELK 101
E+ K+ +E + K EE +K DE KK+ EE +ADE K + + K
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 32.4 bits (73), Expect = 0.60
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEE--EEKEDEGKKEEEEEADEGKNTEKEELK 101
E+ K+ EED+ K EE + +EDE K E + + + + EELK
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 32.4 bits (73), Expect = 0.61
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELKPSNVV 106
+EK E ++ KEE ++K D KK EE+++ADE K +E+ K ++ +
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
Score = 32.4 bits (73), Expect = 0.63
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EK+K EE + +EE + K +E KKE EE+ + + +K+E
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Score = 32.4 bits (73), Expect = 0.64
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 59 LEKEKEE-----EEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLV 113
L+K +EE EE + + EE++K+ E K++EEE + + +KEE K + + V
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Query: 114 VK 115
++
Sbjct: 1781 IE 1782
Score = 32.0 bits (72), Expect = 0.83
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE---ADEGKNTEKEELK 101
E +K+ + + K EE++K DE KK+ EE+ ADE K + K
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 32.0 bits (72), Expect = 0.88
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELK 101
E+ K+ EE + K EE +K DE KK EE ++ADE K +E K
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 32.0 bits (72), Expect = 0.90
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE--EADEGKNTEK----EELK 101
E +K +E + EE ++K DE KK E +ADE K E+ +E K
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Score = 31.6 bits (71), Expect = 0.98
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK-EEEEEADEGKNTEK----EELK 101
+ K++ ++ K EE +K DE KK EE ++ADE K E+ +ELK
Sbjct: 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Score = 31.6 bits (71), Expect = 1.2
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEE--EADEGKNTEKEELK 101
E ++ Y EK+ + EE + EE + K +E KK EEE + ++ K E EE K
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Score = 31.6 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE--EADEGKNTEKEELK 101
EK+K +E + EE+++K DE KK +ADE K +E+ K
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 30.9 bits (69), Expect = 1.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE---EADEGKNTEKEELKPSNV 105
E++K+ +E + K EE +K DE KK+ EE +AD K +E K +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Score = 30.9 bits (69), Expect = 1.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELK 101
E +K +E + EE ++K D KK EE ++A E E E
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
Score = 30.9 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK-EEEEEADEGKNTEKE 98
E +K+ + + K EE +K E K E E ADE + E++
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 30.5 bits (68), Expect = 2.2
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 46 VLLLYELTLECYTLEKEKEEEE----DEGKEEEEEKE--DEGKKEEEEEADEGKNTEKEE 99
V+ LYE + E +K EE +E K+ EEEK+ ++ KK+E EE + + +K E
Sbjct: 1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
Score = 30.5 bits (68), Expect = 2.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEE--EADEGKNTEKEELK 101
K+ EEE EE +K +E KK+ EE +A+E + E LK
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Score = 30.1 bits (67), Expect = 3.2
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELK 101
+EK++ ++ K EE++K DE KK EE ++ADE K +E K
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Score = 29.7 bits (66), Expect = 4.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE---EADEGKNTEKEELK 101
EK+K E+ + + EE++K +E KK EEE +A E +E+ K
Sbjct: 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Score = 29.7 bits (66), Expect = 4.8
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKEELK 101
E++K+ +E + K EE +K DE KK EE ++A+E K +E K
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 29.3 bits (65), Expect = 5.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK-EELK 101
E +K+ EED+ K +E +K KK+ +E + + +K +E K
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Score = 29.3 bits (65), Expect = 5.7
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE--GKKEEEE--EADEGKNTEKE 98
E EK+ E KE EE K+ E KKE EE +A+E K E+E
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Score = 29.0 bits (64), Expect = 6.9
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKK-EEEEEADEGKNTEKEELK 101
+E + ++ K EE++K DE KK EE+++ADE K +E K
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
Score = 29.0 bits (64), Expect = 7.7
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEE-----ADEGKNTEKEELK 101
E++K+ E+ + KE EE+K+ E K+ EEE A+E K E+++ K
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 29.0 bits (64), Expect = 8.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKK-EEEEEADEGKNTEK 97
+E ++ ++ K EE +K DE KK EE+++ADE K E+
Sbjct: 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
Score = 28.6 bits (63), Expect = 9.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 61 KEKEEEEDEGKEE--EEEKEDEGKKEEEEEADEGKNTEKEELK 101
K+KE EE + EE + E+E++ K EE + E + EE K
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 34.2 bits (79), Expect = 0.084
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 49/201 (24%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTL----------------LKAIV--GLKNISQGEI 148
L N + + R + V+ G S +GK++L L A L + + ++
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70
Query: 149 -WVLGGHPA-SIYHKTAG----SKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESI 199
+ G PA +I KT S VG T+ E ++ +++ G+ E
Sbjct: 71 DSIEGLSPAIAIDQKTTSRNPRSTVG------------TVTEIYDYLRLLFARVGIRER- 117
Query: 200 WLFQMRKYSHVLKLP--NLERPVKYLSGG--QKRRLSFTIAILHKPQLIILDEPCVGVDP 255
L + + L L R LSGG Q+ RL+ I L +LDEP +G+ P
Sbjct: 118 -LGFLVD----VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHP 172
Query: 256 LVRKRMWDLLQVFVGKGRTVI 276
R+ + L+ G TV+
Sbjct: 173 RDNDRLIETLKRLRDLGNTVL 193
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 34.6 bits (79), Expect = 0.094
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCS 111
L KE EEE E ++++EE +D+ E+E++ D+ + + E+ + L++ S
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93
Score = 31.9 bits (72), Expect = 0.79
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ K +E E+E EEE++ E++ +++E+ D+ + + E+
Sbjct: 38 IRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDED 78
Score = 28.4 bits (63), Expect = 9.0
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNT 95
E E + EE++D+ +E+E+ +D+ E++E+ D+ +T
Sbjct: 48 EAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 33.7 bits (78), Expect = 0.098
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK--NTEKEELKPSNVVLN 108
EL E LE+EKEE E E E + E K+EEEE E K E LK N L
Sbjct: 124 ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLK 183
Query: 109 N 109
+
Sbjct: 184 S 184
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 34.8 bits (80), Expect = 0.100
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 223 LSGGQKRRLSF------------TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
SGG++ + A H P+LI+LDE GVD R ++ LL+
Sbjct: 1248 ASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-- 1305
Query: 271 KGRTVIMTTQ 280
+MT++
Sbjct: 1306 -DLDFVMTSE 1314
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
EE+E + EE+EE+ED+ + ++E+E++E ++ K+
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 31.5 bits (72), Expect = 0.42
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEA 89
+ E E +++E++ +EE++E++D+ + EEEE+
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 30.8 bits (70), Expect = 0.69
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
EEDE ++EE++E+E ++EE+ DE + +EE P
Sbjct: 109 SEEDESDDDEEDEEEE---DDEEDDDE--DESEEEESP 141
Score = 28.4 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 48 LLYELTLECYTLEKEKEEEEDEGKEEEEEKEDE 80
L+ E E+++EEE+DE ++E+E E+E
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 33.9 bits (77), Expect = 0.14
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
KE E +EDE +EEEEE+E+E + EE E+ G +T E+ N
Sbjct: 131 KEDESDEDE-EEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGN 173
Score = 32.4 bits (73), Expect = 0.39
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSL 112
EE +G EEE E+E EEE D N E EE + N L+ +L
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGN-EDEEAEAENTTLSTVTL 98
Score = 32.4 bits (73), Expect = 0.45
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEE-EEADEGKN 94
+K +EDE E+EEE+E+E ++E E EE ++G N
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQGTN 160
Score = 29.3 bits (65), Expect = 4.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+ +EE E+E EEE ED E+EE E
Sbjct: 58 DSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 28.5 bits (63), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNT 95
E+E+EEEE+E + EE E+ G E D G +
Sbjct: 140 EEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGS 175
Score = 28.5 bits (63), Expect = 7.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 54 LECYTLEKEKEEEEDEG----KEEEEEKEDEGKKEEEEEADEGKNTEKE 98
L+ ++++ + E+ G EEE E+E ++E E++D ++ E E
Sbjct: 39 LKRFSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAE 87
Score = 28.1 bits (62), Expect = 8.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 64 EEEEDEGKEEEEEKEDEGKKE---EEEEADEGKNTEKEELKPSNVVL 107
EE D EEE +E+ +E E+ + +E + E E S V L
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTL 98
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 33.5 bits (76), Expect = 0.14
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 24/179 (13%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
VVL+ V+ E +L A +GKTTL + + GL +G+ L G + G
Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPL-----G 55
Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLER----P 219
+ +P LT +E +YG+D ++SH +L LE+
Sbjct: 56 ANSFILPG-------LTGEENARMMASLYGLDGD-------EFSHFCYQLTQLEQCYTDR 101
Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
V S K L+F I +L +L I D D + RM L + + +++T
Sbjct: 102 VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLT 160
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 34.4 bits (80), Expect = 0.14
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+ EED E +E + ++EEEE DE ++ +
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 33.2 bits (77), Expect = 0.30
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+E+ G E EE +DE ++EEE+E D+ ++ EL
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPE 218
Score = 32.8 bits (76), Expect = 0.36
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E+ + D+ E E + + ++ EEEA ++ + E+
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEI 99
Score = 31.3 bits (72), Expect = 1.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
E +E ++E+E+E+E + ++ ADE + EK
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 33.6 bits (77), Expect = 0.15
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K K+ +++E +++ + +E + +E+EE +E + E+EE
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 32.1 bits (73), Expect = 0.52
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ EE++D+ + EEKE + +EEEE +E + +++E
Sbjct: 247 SDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.7 bits (72), Expect = 0.71
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
+ EE E KE+EEE+E E ++EEE+E +
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.8 bits (67), Expect = 2.5
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++E ++++ + EE+E KEDE ++E EEE +E
Sbjct: 249 DEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 33.1 bits (77), Expect = 0.16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
VL+G S GK+TLL A++ ++ GEI
Sbjct: 89 VLVGQSGVGKSTLLNALLPELVLATGEI 116
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.1 bits (78), Expect = 0.16
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
EKE+ +EE + K+E+ ++E + +K +EE ++ EKE+ K
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 34.1 bits (78), Expect = 0.18
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E + E ++E KE+E+ KE++ KK+E+ + + KEE K
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 32.6 bits (74), Expect = 0.51
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 EKEKEEEEDEG-KEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV 106
EK KEE +D KEE +EK +KE+E+E + ++EE K V
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 32.2 bits (73), Expect = 0.63
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+ +EEE E ++ +EEK+ + +K +EE D E +E +P
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 31.8 bits (72), Expect = 0.88
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E+ KEE++ + ++ +EE +D KEE +E K EKE+ K
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 31.8 bits (72), Expect = 0.92
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
K KEE +++ +E+EKE E K EE + +E K E+ K
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 31.0 bits (70), Expect = 1.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ E +EE++ KE+ +E++ + K++ +EE + K E+ + K
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 30.6 bits (69), Expect = 2.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E KEEE+++ + +EE+K+ + K +EE + + K KE+ P
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144
Score = 30.2 bits (68), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+ KE+ + KE+E+EK+ E ++ EEE + K K
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Score = 29.9 bits (67), Expect = 3.4
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K +E ++E +EEE+++++ K+E++++ ++ K K+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 29.9 bits (67), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EKEK+ EE +EEE+++E K ++ + K K++ P
Sbjct: 149 EKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Score = 29.9 bits (67), Expect = 3.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+E +EEEKE E KEE+++ E E ++ KP
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 29.1 bits (65), Expect = 5.2
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
EK+ EE D +E++ E+ + ++ + N +KE +
Sbjct: 151 EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 33.0 bits (76), Expect = 0.16
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGL 140
L V+ R+ ++ G + +GKTTLL A++
Sbjct: 20 LAVEARKNILISGGTGSGKTTLLNALLAF 48
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 33.8 bits (78), Expect = 0.17
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 113 VVKRREFFVLLGASSAGKTTLLKAIVGL 140
+V R F++ G + +GKTTLL A++ L
Sbjct: 174 LVAARLAFLVSGGTGSGKTTLLSALLAL 201
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 34.0 bits (78), Expect = 0.17
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+KE +E D+ EEE E EDE K EE E D E++
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 31.7 bits (72), Expect = 0.90
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
++E+ E EDE K EE ++D +EEE+ E + L S
Sbjct: 171 DEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDS 214
Score = 31.3 bits (71), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K K++ + K+E +E D+ +EE E DE K+ E E
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAE 188
Score = 29.0 bits (65), Expect = 5.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKE-DEGKKEEEEEADEGKNTEKEE 99
K+KE +E K++EEE E ++ K EE D+ + E+E+
Sbjct: 158 SKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 28.6 bits (64), Expect = 7.0
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE---------GKKEEEEEADEGKNTEKEE 99
+ E+ E+D EEEE+ + E +EEE +E + E
Sbjct: 182 KSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNE 230
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 32.9 bits (75), Expect = 0.17
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 116 RREFFVLLGASSAGKTTLLKAI 137
R + F+L G AGKTTLL A+
Sbjct: 8 RHKRFILTGGPGAGKTTLLAAL 29
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 34.1 bits (78), Expect = 0.18
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 60 EKEKEEEEDE----GKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E EE+ D+ E+EE+ E EG+ +E E + T++E
Sbjct: 208 ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Score = 29.1 bits (65), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++E+ E E EG+E +E E E E +E
Sbjct: 225 QEEQGEGEGEGQEGSAPQESEATDRESESGEE 256
Score = 28.8 bits (64), Expect = 6.7
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E+ ++ E E +E+ ++ + ++EE+ EG+ E
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 28.8 bits (64), Expect = 7.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ + E E E + E E + EG +E EA + ++ EE
Sbjct: 217 DDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEE 256
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 34.2 bits (79), Expect = 0.18
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 82 KKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREF-----------FVLLGASSAGK 130
+ +AD E EL N ++KR ++++G +GK
Sbjct: 68 AAPTKLKADAAAEAEIREL---RARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGK 124
Query: 131 TTLLK 135
TTLL+
Sbjct: 125 TTLLQ 129
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 32.7 bits (75), Expect = 0.18
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ E++EE E E++E ++E ++E DE ++E+E++ +
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52
Score = 29.7 bits (67), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEA-DEGKNTEKEE 99
E E D+G+E+EE E++ E +E + + E++E
Sbjct: 4 ESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDE 40
Score = 28.1 bits (63), Expect = 6.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E E +E DE + + + E + + + EEE E+E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 27.7 bits (62), Expect = 9.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E++E+++ EEE + D+ + EE + +E ++E +
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 33.8 bits (77), Expect = 0.19
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+EEEE E +E+EE E E K +E+++E E+EELK
Sbjct: 139 VLEEEEEVEMEEDEEYYEKEPGKVVDEKSEE---EEEEELKT 177
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 34.1 bits (78), Expect = 0.21
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
KEK+EE+DE K EE + E+ ++ EEEE
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEE 307
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 33.6 bits (77), Expect = 0.23
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
T ++EEE++E +EEE+E E K+ ++E E + E +
Sbjct: 386 TERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKY 427
Score = 33.6 bits (77), Expect = 0.24
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 52 LTLECYTLEKEKEEEEDEGK-EEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNC 110
L +E E++ EEEEDE EEEEE EDEG +E + +E + + E + N
Sbjct: 379 LEIEDANTERDDEEEEDE--EEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG--NS 434
Query: 111 SLVV 114
SL V
Sbjct: 435 SLAV 438
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 33.4 bits (77), Expect = 0.24
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 18/89 (20%)
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR----MWDLLQ------VFVGKGR 273
SGGQ++R++ A++ P +++ DEP +D V+ + M DL Q VF+
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+V+ ++I A EV +Y GR + +
Sbjct: 216 SVV---EHI-----ADEVMVMYLGRCVEK 236
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 33.3 bits (77), Expect = 0.25
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
EE+E +EEEEE+E+ EEEA G
Sbjct: 298 AAAAEEEEEEEEEEEEEEP----SEEEAAAG 324
Score = 31.4 bits (72), Expect = 0.89
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
KE + + EEE+E+E ++EEEE ++E
Sbjct: 289 KEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 29.8 bits (68), Expect = 2.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 60 EKEKEEEEDEGKEEEE 75
E+E+EEEE+E EEE
Sbjct: 305 EEEEEEEEEEEPSEEE 320
Score = 29.8 bits (68), Expect = 3.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
E+EEEE+E +EEEE E+E
Sbjct: 300 AAEEEEEEEEEEEEEEPSEEEA 321
Score = 28.7 bits (65), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEA 89
+ +EEEEE+E+E ++E EE
Sbjct: 296 AQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.4 bits (77), Expect = 0.26
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+++EEEED +E+EE +D+ +EEEE+ D E EE
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEE 359
Score = 33.0 bits (76), Expect = 0.38
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+E+EE+ D EEE+E++++ E++EE +E + +K+
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 32.7 bits (75), Expect = 0.46
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ E+EEE+ + +EEE++EDE +E++E +E + EK++ K +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 32.3 bits (74), Expect = 0.64
Identities = 12/48 (25%), Positives = 31/48 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVL 107
E+E++ + + +E+EE+++ + + +EEEE +E + +K+ + + L
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 32.3 bits (74), Expect = 0.71
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+E +EEE++ KE ++ +DE + ++++ G+ E EE
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEE 324
Score = 31.5 bits (72), Expect = 0.95
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ +EEEED +EEE E++ ++E++ +E + ++++ K S
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 31.1 bits (71), Expect = 1.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E EE++D+ EEEEE D +EE+EE ++ + + EE
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 30.4 bits (69), Expect = 2.6
Identities = 10/41 (24%), Positives = 28/41 (68%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
++E+EE+ + ++EE++ +D ++EE+ + + + E++E
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 30.4 bits (69), Expect = 2.7
Identities = 10/44 (22%), Positives = 28/44 (63%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
++EE+E++ ++E+ E+E ++E+E++ + + + EL +
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELPFT 394
Score = 29.6 bits (67), Expect = 3.8
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
++ EEE++E ++ ++E ++E ++EE+E+ + P
Sbjct: 349 VDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELP 392
Score = 29.6 bits (67), Expect = 4.1
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E+++++D +EEE+ + +++EE+E + ++ E+EE
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 29.6 bits (67), Expect = 4.1
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+++EE+D+ EEEE++ + EEE+E DE + E +E
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDE 369
Score = 29.6 bits (67), Expect = 4.4
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ E+EED+ + EEE+ED +EEE+ ++ + ++++
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDD 368
Score = 29.2 bits (66), Expect = 5.2
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
E + ++ E+E ++ + E+E +++E+ + ++ + E+EE +
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 28.8 bits (65), Expect = 7.8
Identities = 12/40 (30%), Positives = 29/40 (72%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++++E+++D+ +EEEE+ + ++E+EE+ D ++EE
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEE 371
Score = 28.4 bits (64), Expect = 9.7
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 58 TLEKEKEEEED-------EGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E ++E++ E +EE+ + DE + EE+E++D+ + E+EE
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 32.4 bits (74), Expect = 0.27
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+ KEEEE E + E++++E+E K+ EE+ E + EK
Sbjct: 40 GERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
Score = 32.0 bits (73), Expect = 0.36
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEA 89
E+E EEE ++ KEEEE KE E + +E+E
Sbjct: 42 RKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 30.8 bits (70), Expect = 0.83
Identities = 16/44 (36%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E++K EE+ EG+ +EEE+ +E ++E+++E +E K E++ K
Sbjct: 30 ERKKLEEKREGERKEEEELEE-EREKKKEEEERKEREEQARKEQ 72
Score = 28.9 bits (65), Expect = 3.7
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEE--EADEGKNTEKEELK 101
++E EEEE E +++ EEK + +KEEEE E E K E+E +
Sbjct: 20 QREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Score = 27.7 bits (62), Expect = 8.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 58 TLEKEKEEEEDEGKE----EEEEKEDEGKKEEEEEADEGKNTEKEELK 101
++ K EE+ ++ EEEE+E+ K EE+ E + + E EE +
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.4 bits (77), Expect = 0.27
Identities = 11/66 (16%), Positives = 29/66 (43%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNC 110
+L + + + E+++++ +++ + EDE KKE +E + + + + L
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQA 200
Query: 111 SLVVKR 116
K
Sbjct: 201 RKDAKL 206
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 32.5 bits (75), Expect = 0.28
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
+ E ++E E++++ +++ +++EEEAD G + E
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPE 78
Score = 31.0 bits (71), Expect = 0.86
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
E E DE E+++ +DE + E++EE +
Sbjct: 43 AIESELDEEDLEDDDDDDEDEDEDDEEEADL 73
Score = 30.2 bits (69), Expect = 1.5
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E + ++ E++ +D+ ++E++E + + EE
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 29.5 bits (67), Expect = 2.7
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E E++ + +++++ DE ++ E+E
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 29.5 bits (67), Expect = 2.7
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+ E +E++ E +++E+ DE E +
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 28.7 bits (65), Expect = 5.0
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E E ++ED ++++E ++ + E+ +L P
Sbjct: 35 AAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 27.9 bits (63), Expect = 9.7
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E + +EE+ ED+ +E+E+ D+ + +
Sbjct: 36 AAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPE 78
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 33.0 bits (75), Expect = 0.29
Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159
LKP VL + +K + + G + +GK++L A + +I G+I + G + +
Sbjct: 33 LKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89
Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERP 219
T S++ + Q+ +F +I+ N D+ +W L++ L+
Sbjct: 90 LHTLRSRLSIILQDPILFSG-SIR--FNLDPECKCTDDRLW--------EALEIAQLKNM 138
Query: 220 VKYLSGG---------------QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
VK L GG Q++ A + K ++I+DE +D ++
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE----NI 194
Query: 265 LQVFVGKG---RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311
LQ V RTV+ + DA V L +G ++ D+P+ ++
Sbjct: 195 LQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.7 bits (70), Expect = 0.31
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 69 EGKEEEEEKEDEGKKEEEEEADEG 92
EE++ E ++EEEE+ D G
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDMG 84
Score = 29.5 bits (67), Expect = 0.89
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG 81
EEE+ E +EEEEE +D G
Sbjct: 63 AAAAEEEKKEEEEEEEEDDDMG 84
Score = 27.2 bits (61), Expect = 5.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 70 GKEEEEEKEDEGKKEEEEEADEG 92
E+E K+EEEEE ++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.9 bits (75), Expect = 0.31
Identities = 18/78 (23%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
L+ G+ +++ IA+ ++P+L+I DEP ++P + +++ LL ++ T+++ +
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 282 IEEAND-ASEVAFLYKGR 298
++ + A ++ LY G+
Sbjct: 219 LQMISQWADKINVLYCGQ 236
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 32.3 bits (74), Expect = 0.32
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
EE+ ++ +EE EE E E E+E E + + + EL
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLD 40
Score = 31.1 bits (71), Expect = 0.81
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+E+E EE E E E+E +E+ ++E E E + + + EL+
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELE 50
Score = 29.2 bits (66), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E+ +EE E+ EE E E E + EEE E + E+ ++
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 28.0 bits (63), Expect = 8.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
+E E EE E EEE +E + E + ++ K E E
Sbjct: 10 EEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 33.0 bits (75), Expect = 0.33
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV--LNNCSLVVKRRE 118
+E E +E E+ E++ D K+ +++ E +E VV N S V +
Sbjct: 379 NPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNERSYVTRGNS 438
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNIS 144
V L+ +KN+S
Sbjct: 439 IGVFKNTDEGS----LEFKAAIKNVS 460
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 33.3 bits (76), Expect = 0.33
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLV 113
E E E + EG+E E + + + E +E+DE T E+ +P+ V
Sbjct: 262 EDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPATPFTELMEEV 315
Score = 32.9 bits (75), Expect = 0.37
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 60 EKEKEEEEDEGK----EEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E EE+ D+ + E+ E +E + +E E DE + T+ E
Sbjct: 229 EDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEG 272
Score = 31.4 bits (71), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEAD-EGKNTEKE 98
E+ + G EE E DE +++E E D EG+ E +
Sbjct: 245 EDSEAG-REESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 31.0 bits (70), Expect = 1.5
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 62 EKEEEEDEGKEEE-EEKEDEGKKEEEEEADEGKNTEKEEL 100
E+ E DE +E+E E + EG++ E + A+ +++E +E
Sbjct: 252 EESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDES 291
Score = 30.6 bits (69), Expect = 2.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+ E EE EG +E EE E E E EE +
Sbjct: 246 DSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 32.3 bits (74), Expect = 0.33
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E++ EE + E EE E+ E+E +EEE E + E++E+
Sbjct: 5 EQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIA 46
Score = 29.6 bits (67), Expect = 2.7
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 57 YTLEKEKEEEEDEGK-EEEEEKEDEGKKEEEEEADEGKNTEKEE 99
T E + EE E+ K EEEE +E+E ++E E E ++ + E E
Sbjct: 7 KTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEA 50
Score = 28.1 bits (63), Expect = 7.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+E EE E +EE EE+E E + E EEE E E +
Sbjct: 11 PDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQ 51
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 32.7 bits (74), Expect = 0.35
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 60 EKEKEEEEDEGKEEEEEKED---------EGKKEEEEEADEGKNTE 96
E+E+ EE D +EEE+E+ E +EEEEEA+ + E
Sbjct: 178 EEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGE 223
Score = 32.3 bits (73), Expect = 0.42
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 62 EKEEEEDEGK-------EEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+EEEE EG + E E+ D+ + EEEE +E N + E
Sbjct: 210 EEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIE 254
Score = 31.1 bits (70), Expect = 0.97
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 62 EKEEEEDEGKEEEEEKEDEGK---KEEEEEADEGKNTEKEELKP 102
E E +E +EEE E D+G+ E E D+ + E+E +
Sbjct: 203 EGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEE 246
Score = 31.1 bits (70), Expect = 1.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E +E E+E +E E + E + E E + K E+EE++
Sbjct: 203 EGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEE 245
Score = 30.7 bits (69), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+EE +E EEE+++E + E + N E+EE
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEE 214
Score = 28.8 bits (64), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E+ EE + +EE+EE + E E +E + E E
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 28.4 bits (63), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+E EE+ E E E+E EE +E +K++
Sbjct: 240 EEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 31.7 bits (72), Expect = 0.45
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
V++G GK++LL A++G
Sbjct: 1 VVVGRGGVGKSSLLNALLG 19
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.0 bits (73), Expect = 0.45
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
T +K K++++++ EEE++ E + K EE E D N E + + S
Sbjct: 64 TTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.5 bits (74), Expect = 0.49
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKK--------EEEEEADEGKNTEKEELKPSNV 105
T EKEKE+ + K E+E EDE + EEE E E K+E + V
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEV 342
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 32.7 bits (74), Expect = 0.52
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 50 YELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
YE + + + E +++EE DE E+ E E E +EE+ ++ E +
Sbjct: 941 YEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKA 990
Score = 31.1 bits (70), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
T E E+ +E E E+E + D +E+ E+ DE ++ + +P
Sbjct: 952 TDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.1 bits (70), Expect = 0.53
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 60 EKEKEEEEDEGKEEEE--EKEDEGKKEEEEEADEGKNTEKEE 99
E + + DE EEEE E DE E + EA+E E EE
Sbjct: 87 EAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
Score = 30.7 bits (69), Expect = 0.60
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ EE E + +E+ ++ + + +EADE + T++
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAV 107
Score = 30.7 bits (69), Expect = 0.64
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E + + +EEE+ DE E +EAD EE
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEE 124
Score = 29.9 bits (67), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ +EE+E E +E DE E EEADE ++ E E
Sbjct: 93 AADEADEEEETDEAVDETADEAD-AEAEEADEEEDEEAEA 131
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ + + DE +E E + + +EEEE DE + +E
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Score = 29.5 bits (66), Expect = 1.6
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E E E + ED + E + ADE E
Sbjct: 65 AATAAAEAAEEAEAADADEDADEAAEADAADEADEEE 101
Score = 28.8 bits (64), Expect = 3.0
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+E ++E + +E E + + E E + + E+ E
Sbjct: 91 ADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 28.0 bits (62), Expect = 5.9
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E +E + + +++ + E + + + E +E
Sbjct: 66 ATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 27.6 bits (61), Expect = 7.0
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 50 YELTLECYTLE-KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
Y+L E LE E E + ++ E +ADE + E
Sbjct: 41 YDLGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEA 91
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A
peptide from the central, syntaxin binding domain of
synaphin competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal
exocytosis by promoting interaction between the
complementary syntaxin and synaptobrevin transmembrane
regions that reside in opposing membranes prior to
fusion.
Length = 139
Score = 31.0 bits (70), Expect = 0.58
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
KE+E DE EEE++E + E EE + K+ + EE
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEE 59
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.9 bits (73), Expect = 0.58
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ E+E+D+ K+ +E+EDE +KEEE+ K K+ LK
Sbjct: 25 DDEDEDDDVKDSWDEEEDE-EKEEEKAKVAAKAKAKKALK 63
Score = 31.6 bits (72), Expect = 0.64
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
K + + +E ++ + EKE++G +E EE+ E + EK L+
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 32.3 bits (73), Expect = 0.61
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 57 YTLEKEKEEEE-DEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+EE E DE EE EE + E ++ E DE K EE+K
Sbjct: 237 GDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIK 282
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 32.3 bits (74), Expect = 0.64
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EE+D+ EE +E+++E K E++E D+ + + +
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRE 162
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.9 bits (70), Expect = 0.69
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L +EEE+ +E +E E E E + E+ E K E + K
Sbjct: 91 LSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPK 133
Score = 29.0 bits (65), Expect = 3.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
T E+ +E E E E + + E KK E + K K E K
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Score = 28.2 bits (63), Expect = 5.4
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+++E + EEE ++ +++ E E K +K E+
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPK 133
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.3 bits (71), Expect = 0.69
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EK+ E EE E ++ EE A+E E E
Sbjct: 148 AEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 27.8 bits (62), Expect = 9.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LE EK+ E + E+K E EEA + E EE
Sbjct: 133 LEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 32.2 bits (73), Expect = 0.72
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEG-----KKEEEEEADEGKNTEKEELKPSNV 105
KEK + E K E E EG K+ EE+ D ++ KP V
Sbjct: 801 PKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 31.2 bits (71), Expect = 0.72
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EKE E EE+E KE++++KE + +K+E+++ E K K
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKK 187
Score = 28.5 bits (64), Expect = 5.1
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
K E+E E EEEE+KE + KKE ++E E K+ +++ ++
Sbjct: 139 TTAKVEKEAE-VEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Score = 27.8 bits (62), Expect = 8.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEE--EEADEGKNTEKEE 99
+ E+E E+E E E+E KKE++ +E + K +K++
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 32.0 bits (72), Expect = 0.73
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+KEEEEDE EE EE E+ EEE + DE ++EK++ K S+
Sbjct: 106 QKEEEEDEDVEEIEEVEEVEVVEEEYDDDE--DSEKDDEKESD 146
Score = 28.1 bits (62), Expect = 9.9
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 60 EKEKEEEED----EGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+KE+EE+ED E EE E E+E +E+ E D+ K ++ E
Sbjct: 106 QKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAE 148
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.7 bits (72), Expect = 0.74
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK---EELKP 102
EK++ E+ KE E+ E ++ E+A + ++ EE K
Sbjct: 80 AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA 126
Score = 29.4 bits (66), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 60 EKEKEEEEDEGKEEEEEK---EDEGKKEEEEEA 89
E+ ++ E++ K+ EE K E K + E EA
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Score = 29.0 bits (65), Expect = 4.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
LE+ E+ + E+ K+ E K+++ EEA + E
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 31.6 bits (72), Expect = 0.76
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
L+R + LSGG+ +R++ A+ DEP +D +++R+
Sbjct: 133 LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD--IKQRL 176
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 30.3 bits (68), Expect = 0.82
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADEG 92
G + E +KE++ ++EEEEE D G
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDLG 107
Score = 29.5 bits (66), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDE 80
T + E +++E KEEEEE+ED+
Sbjct: 83 TAGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family.
This family includes the HABP4 family of
hyaluronan-binding proteins, and the PAI-1 mRNA-binding
protein, PAI-RBP1. HABP4 has been observed to bind
hyaluronan (a glucosaminoglycan), but it is not known
whether this is its primary role in vivo. It has also
been observed to bind RNA, but with a lower affinity
than that for hyaluronan. PAI-1 mRNA-binding protein
specifically binds the mRNA of type-1 plasminogen
activator inhibitor (PAI-1), and is thought to be
involved in regulation of mRNA stability. However, in
both cases, the sequence motifs predicted to be
important for ligand binding are not conserved
throughout the family, so it is not known whether
members of this family share a common function.
Length = 106
Score = 30.1 bits (68), Expect = 0.84
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKED--EGKKEEEEEADE 91
ELT E E++ E EE + EEE KE E ++ EEEE E
Sbjct: 36 ELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 29.3 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+ +E E +E EEE++ E EE E+A + K LK
Sbjct: 58 EEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRKALPALK 99
Score = 27.4 bits (61), Expect = 6.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 58 TLEKEKEEEEDEGKEEEE---EKEDEGKKEEEEEADEGKNTEKEE 99
+++ E E +E EEEE +E + +EE + + E EE
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEE 73
Score = 27.4 bits (61), Expect = 6.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E +E+ E+E K E EEK+ ++ +E E + E+EE K
Sbjct: 36 ELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 27.4 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E+ +EEE++E +E++ +E+ K+ EE + + +KE
Sbjct: 40 EQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 29.6 bits (67), Expect = 0.93
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 43 RLWVLL----LYELT--LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
R WVLL LY T LE KEK+EE +E KEE E+ + ++E E+ D G
Sbjct: 29 RTWVLLDSTDLYYRTDYLEVTDKVKEKKEEREEDKEELIERI-KKEEETFEDVDLGS 84
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 31.5 bits (71), Expect = 0.93
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
EE G E + + +P+
Sbjct: 107 PSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPA 150
Score = 30.3 bits (68), Expect = 2.0
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ E E + ++ + E E +P
Sbjct: 200 SSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPE 241
Score = 29.9 bits (67), Expect = 2.8
Identities = 5/45 (11%), Positives = 8/45 (17%), Gaps = 1/45 (2%)
Query: 60 EKEKEEEEDEGKEEEEE-KEDEGKKEEEEEADEGKNTEKEELKPS 103
+ E E A + +PS
Sbjct: 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPS 164
Score = 29.6 bits (66), Expect = 4.0
Identities = 2/41 (4%), Positives = 3/41 (7%), Gaps = 1/41 (2%)
Query: 60 EKEKEEEEDEGKE-EEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E +
Sbjct: 117 GLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNP 157
Score = 29.6 bits (66), Expect = 4.3
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 62 EKEEEEDEGKEEE-EEKEDEGKKEEEEEADEGKNTEKEE 99
E + + E+ E E +E E
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEP 187
Score = 29.2 bits (65), Expect = 5.0
Identities = 6/42 (14%), Positives = 7/42 (16%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E G E + E PS
Sbjct: 117 GLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPS 158
Score = 28.8 bits (64), Expect = 6.8
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
L+ E+ +E + E E + +++ ++ + P
Sbjct: 167 LQPSHEDSPEEPEPPTSEPEPDS--PGPPQSETPTSSPPPQSPP 208
Score = 28.4 bits (63), Expect = 8.1
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKE 98
+ E +E + E+E+ +G E +
Sbjct: 69 TESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSG 109
Score = 28.4 bits (63), Expect = 8.6
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKE-DEGKKEEEEEADEGKNTEKEELKP 102
++ + E+ +E + E E ++ +E P
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSP 202
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 31.6 bits (71), Expect = 0.94
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
++E + D E EEKE++ + EE E E E EL+
Sbjct: 306 AHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKG 349
Score = 30.8 bits (69), Expect = 1.7
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 47 LLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
+ E E E E E E + + E +KEE++E +E +
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENE 333
Score = 30.1 bits (67), Expect = 2.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E++ ++E+ E + KEE + + EE+EE DE + E+
Sbjct: 288 EVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 29.3 bits (65), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
KE E + E ++EE E + K+E + + + EKEE
Sbjct: 286 NKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEE 325
Score = 29.3 bits (65), Expect = 5.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 44 LWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
L V E +KE+++EE E E +E+ + +E E E + E EE +
Sbjct: 277 LDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDD-ENEENERH 335
Query: 104 NVVL 107
+L
Sbjct: 336 TELL 339
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 30.7 bits (70), Expect = 0.95
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 120 FVLLGASSAGKTTLLKAIV---GLKNISQGEIW 149
++LG AGK+TL K + GL ++ G+I
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDIL 35
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.6 bits (72), Expect = 0.98
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 217 ERPVKYLSGGQK------RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP+ +LSGG++ RL+ ++ + L+ILDEP +D R+++ D+++ ++
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 271 KGRTVIMTTQYIEEANDASE 290
K VI+ + + EE DA++
Sbjct: 843 KIPQVIIVS-HDEELKDAAD 861
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 31.2 bits (71), Expect = 1.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 99 ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL 140
EL + + L + R+ ++ G + +GKTT LK++V
Sbjct: 126 ELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDE 167
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.5 bits (71), Expect = 1.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
E E+ D+ E++EEK+ E ++ EE+ + T +++ S V
Sbjct: 145 ESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGV 190
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 30.7 bits (70), Expect = 1.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
++G SAGK+++L A++G
Sbjct: 2 AVVGDQSAGKSSVLNALLG 20
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 31.6 bits (72), Expect = 1.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + KE+E ++ EEEE+ + E+ + E EE
Sbjct: 392 EALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEE 436
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 30.7 bits (69), Expect = 1.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
V+LG GKTTLL +VG
Sbjct: 9 VVLGDGGVGKTTLLNRLVG 27
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
VL G S GK+TLL A++ ++ GEI
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDLRTGEI 66
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 31.5 bits (72), Expect = 1.1
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEE----ADEGKNTEKEELKPSNVVLNNCSLVV 114
+E+EEEE+E EEEEE+E+E ++ EEE E +EEL S
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVS----------A 353
Query: 115 KRREFF 120
+R EFF
Sbjct: 354 RRHEFF 359
Score = 30.0 bits (68), Expect = 3.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E E+E +EEEE E+E ++EEEEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 28.5 bits (64), Expect = 8.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
+ EEE+E +EE E+E+E ++EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++E+ E E E+ E+ E EG E E
Sbjct: 85 DEEDAETEDTEDVEDDEWEGFPEPTVTDYE 114
Score = 29.2 bits (66), Expect = 1.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
KE + +E ++EE+ E E ++ E++ EG
Sbjct: 73 KEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVT 111
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E K EE+ EE+ E ED E++E + T +
Sbjct: 74 EALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 28.4 bits (64), Expect = 4.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
K EEE D+ ++ E E ++ + +E E E T+ EE
Sbjct: 75 ALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEE 115
Score = 27.3 bits (61), Expect = 9.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 60 EKEKEEEEDEGKEEEEE----KEDEGKKEEEEEADEGK 93
++E E ED E++E E EEE DE K
Sbjct: 85 DEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDK 122
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 30.8 bits (70), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 79 DEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSL 112
D+ K EEE+A++ + E+ E K SN + SL
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHKSL 175
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 31.4 bits (72), Expect = 1.1
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 216 LERPVKYLSGGQKRRL---SFTIAILHK----PQLIILDEPCVGVDPLVRKRMWDLLQVF 268
L +P LSGG+ +R+ L K L ILDEP G+ K++ ++L
Sbjct: 816 LGQPATTLSGGEAQRVKLAKE----LSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871
Query: 269 VGKGRTVIMTTQYIE 283
V KG TVI+ IE
Sbjct: 872 VDKGNTVIV----IE 882
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEE 86
KE EE++ E + E++++ DE E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.6 bits (71), Expect = 1.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
++E E++ E +E E+EKE E ++E E EA+
Sbjct: 589 KREAEQKAREEREREKEKEKEREREREREAE 619
Score = 29.3 bits (65), Expect = 5.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
LY L L K++EE ++ K E E+K E ++E E+E ++ + E+E
Sbjct: 567 LYFTPLASSKLAKKREEAVEKAKREAEQKARE-EREREKEKEKERERERE 615
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 31.4 bits (71), Expect = 1.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E+E + ++ E E E +G+ EE+E ++
Sbjct: 662 EDECEAIEDSESESESDGEDGEEDEQED 689
Score = 29.8 bits (67), Expect = 3.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E E E E E E E + E +E+E+E D N + +
Sbjct: 662 EDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 29.1 bits (65), Expect = 6.0
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKR 116
E E + EE + E+E E ++ + E E + ++G+ E+E+ +N + V+R
Sbjct: 650 EDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRR 706
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or
'arrest' during elongation process. It is thus possible
that BEX is also acting in this way.
Length = 97
Score = 29.2 bits (66), Expect = 1.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
EK +E+EGK E E KE+E ++ E EGK E
Sbjct: 2 EKPCKENEGKPESEPKEEE--EKRPLEEGEGKKPE 34
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 29.1 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 50 YELTLE----CYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEE 87
+LTL+ T+ E E E++ E EE++D+ + EEEE
Sbjct: 1 QDLTLKRSAFTLTVRGELPEPEEDEILELEEEDDDDEDEEEE 42
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
VLLG S GK+TL+ A++ N GEI
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEI 195
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEA 89
+EEEEE+E+ K+++ +EA
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEA 114
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI 137
K V N+ +L R ++ G + GK+T L++I
Sbjct: 11 LALTKGETFVPNDINLGSGR--LLLITGPNMGGKSTYLRSI 49
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 31.2 bits (71), Expect = 1.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 39 KFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEA 89
K R W E + EK K++++ E K+EEE K +E + E EA
Sbjct: 722 KKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEA 772
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 29.8 bits (68), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 120 FVLLGASSAGKTTLLKAI 137
VL G S GK+TLLK +
Sbjct: 2 IVLSGPSGVGKSTLLKRL 19
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 30.0 bits (68), Expect = 1.3
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
T +K+K E E + EE
Sbjct: 123 TPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 30.8 bits (69), Expect = 1.4
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
L+ Y E + EE++ + ++EEEE E+E K+EE + D+
Sbjct: 206 LQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.2 bits (65), Expect = 3.5
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEE 86
L E E T EK+ +EE++E + EEE K++EG+ ++
Sbjct: 206 LQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 31.1 bits (70), Expect = 1.5
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+EK+ ++ + E E +E + + ++E TE+ +
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWD 454
>gnl|CDD|218872 pfam06048, DUF927, Domain of unknown function (DUF927). Family of
bacterial proteins of unknown function. The C-terminal
half of this family contains a P-loop motif.
Length = 284
Score = 30.7 bits (70), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 119 FFVLLGASSAGKTTLLKA 136
F +G SS GKTT LK
Sbjct: 193 GFHFVGDSSTGKTTALKL 210
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ EE E+E ++ +E +E ++E EEEA+E ++E
Sbjct: 42 REIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKE 81
Score = 27.4 bits (61), Expect = 6.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ +E +E +E EE E+E +K +E +E + +EE
Sbjct: 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEE 70
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
+KE + EE++ +EEEE ++ E +KE E+
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREKNKS 56
Score = 26.1 bits (58), Expect = 9.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
K+KE + +E K EEEE+ +K EE + E + +E L S
Sbjct: 23 KAKKKELKAEEEKREEEEEA---RKREERKEREKNKSFEELLNESE 65
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 30.7 bits (70), Expect = 1.5
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E++ + +E ++EE +++ E KK+EE EA K + +E+ K
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 30.8 bits (70), Expect = 1.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E + E+ + EEE +DE E E E N
Sbjct: 236 EMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVR 274
Score = 29.3 bits (66), Expect = 4.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E LE E + +E EG EE + + E + ++E + ++ + KP
Sbjct: 221 EKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKP 272
Score = 28.5 bits (64), Expect = 8.2
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 23/76 (30%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEE----------------------EEKEDEGK-KEEEE 87
EL E Y E + E++ E + E EE +D+G+ + ++E
Sbjct: 197 ELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDE 256
Query: 88 EADEGKNTEKEELKPS 103
A EG +E E +
Sbjct: 257 SAWEGFESEYEPINKP 272
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.2 bits (71), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
TLEKE E+E + +E+ E K E+E + N +KEEL+
Sbjct: 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-NGKKEELE 867
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.8 bits (70), Expect = 1.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
K+K+E+++ +++ EK+ + KKE++E EG+
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.5 bits (69), Expect = 1.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ E+E + E+E E KK+ EE A + +K+
Sbjct: 95 KQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134
Score = 30.5 bits (69), Expect = 2.1
Identities = 9/46 (19%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK----EEEEEADEGKNTEKEELK 101
++ +E ++ + E+E K+ E ++ E++++A+E + K
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132
Score = 29.8 bits (67), Expect = 3.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
LEKE+ +++ K+ EE + K+++ E K + K
Sbjct: 106 LEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 30.6 bits (69), Expect = 1.6
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 11/46 (23%)
Query: 64 EEEEDEGKEE-------EEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E+DEG+ E EEE+ +EG+++EEEE +E E EE +P
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE----ESEEFEP 104
Score = 28.6 bits (64), Expect = 5.9
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E +E E +EEE +EG+E+EEE+ +E +E E D
Sbjct: 68 EGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGD 107
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 30.2 bits (68), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
KEE E +EE DE K+E +EA + ++ EK+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQ 38
Score = 28.6 bits (64), Expect = 4.8
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE-GKKEEEEEADEGKNTEKEELK 101
++E E+D +EE ++ + KE +E D+ K E+L+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLE 45
Score = 28.3 bits (63), Expect = 7.6
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE--ELKPSN 104
EK+ +EE + ++E ++ K+E++E+ + ++ EKE +LK N
Sbjct: 9 EKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKN 55
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 446
Score = 30.9 bits (70), Expect = 1.7
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 282 IEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKA 341
I A + F+ G +AQ GF S++ +L VF DG + P A A
Sbjct: 65 IRHATKKNPDVFVAVGGCVAQQIGSGFFSRFPQVRL--VF----GTDGIAMAPQALERLA 118
Query: 342 EEPEVKL 348
EEP+++L
Sbjct: 119 EEPDLRL 125
>gnl|CDD|201520 pfam00945, Rhabdo_ncap, Rhabdovirus nucleocapsid protein. The
Nucleocapsid (N) Protein is said to have a "tight"
structure. The carboxyl end of the N-terminal domain
possesses an RNA binding domain. Sequence alignments
show 2 regions of reasonable conservation, approx.
64-103 and 201-329. A whole functional protein is
required for encapsidation to take place.
Length = 406
Score = 30.8 bits (70), Expect = 1.7
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 70 GKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV 106
K+ E ++D+G + AD+G + E K +VV
Sbjct: 344 EKKYTEYRDDDGDNTDAPLADDG---DDEAPKSRDVV 377
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 1.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 60 EKEKEE-EEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
EK E+ E+ +E EE ED K +EE E E +
Sbjct: 4060 EKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 30.7 bits (69), Expect = 2.3
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 60 EKEKEEE-----EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E ++++ ED+ K E+ E+ ++ EE D K+ E+ E
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELE 4089
Score = 30.4 bits (68), Expect = 3.0
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEE-----EEEADEGKNTEKE 98
TL+++ ++++ E++EK +E EE EE ++G +++E
Sbjct: 4042 TLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
Score = 30.0 bits (67), Expect = 3.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
+K+++E+EDE + ++ D+ + + +E + E E+L
Sbjct: 3947 DKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDL 3987
Score = 29.6 bits (66), Expect = 5.2
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
LE+ +ED +++ + ++ +K E+ +E +E +
Sbjct: 4037 LEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTE 4079
Score = 29.2 bits (65), Expect = 5.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
K E+++ + KE+EEE D+ ++E + D +N +
Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 28.8 bits (64), Expect = 7.6
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
++E + E+DE ++E+ E+ +E+ + D+ + +++ K
Sbjct: 4020 KEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEK 4061
Score = 28.8 bits (64), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E + +ED+ K E++ E + EEE D G + E
Sbjct: 3932 ESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 30.4 bits (69), Expect = 1.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKN 94
++ EE E++ + E E EA+EG+
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEE 238
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 29.6 bits (67), Expect = 1.8
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E +++ K+E E++E + K+EE++ DE K T K+ K
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEK-TAKKRAK 89
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 29.5 bits (66), Expect = 1.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADE--GKNTEKEELKPS 103
E+E E EE E++ + +E G+N +KEE +P
Sbjct: 9 YEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPV 50
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
EKEKE E E ++ E++E E +EEE+ +E ++ +++E+
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
Score = 27.9 bits (62), Expect = 9.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ + E EE E E + E E+ED +++E+EE + + E+E
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+E E+ ++E K E EE +E ++ E+EA+ +
Sbjct: 27 REEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSAL 68
Score = 27.7 bits (62), Expect = 8.7
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+E EE +E +EE E+ ++E K+E EE +E ++E
Sbjct: 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKE 55
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 29.5 bits (67), Expect = 2.0
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNIS 144
+ G + GK++LL A++G +N+
Sbjct: 1 AIFGRPNVGKSSLLNALLG-QNVG 23
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 30.3 bits (68), Expect = 2.0
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
E EEE++ G+EEEEE E+E + + E++
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDD 32
Score = 29.5 bits (66), Expect = 3.8
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSL 112
E+E+E +++ EEE +++ E +K E + E + +KE L ++
Sbjct: 52 EREREAAKEKALEEEAKRKAEERKRETLKIVE-EEVKKELELKKRNTLLEANI 103
Score = 28.7 bits (64), Expect = 6.9
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E + EEEDE EEEEE+ EEEEE D + E LKP
Sbjct: 2 TEVLELEEEDESGEEEEEES-----EEEEETDSEDDMEP-RLKP 39
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to
be DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 2.0
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 7/37 (18%)
Query: 62 EKEEEEDEG-------KEEEEEKEDEGKKEEEEEADE 91
E+E EEDE +EEE+++E E ++EEEEE +
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVD 55
Score = 28.1 bits (63), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 57 YTLEKEKEEEE-------DEGKEEEEEKEDEGKKEEEEEADEGK 93
+ +E+E+EEEE E E E + E+EG+KE + E K
Sbjct: 43 FEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKK 86
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 29.1 bits (66), Expect = 2.1
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 15/41 (36%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
L+G S GKTTL +A+ G E+ Y KT
Sbjct: 6 LIGRSGCGKTTLTQALNGE------EL---------KYKKT 31
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK 83
E+EK E+E+E ++EEE +E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 26.9 bits (60), Expect = 2.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 73 EEEEKEDEGKKEEEEEADEGKNTEK 97
EEE++EDE + E+EEE +E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.5 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEA 89
E+E +E+EEE EDE + EE+ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 25.8 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGK 82
EK ++EEE+E +EE EE+ + +
Sbjct: 24 EKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.4 bits (69), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKED-EGKKEEEEEADEGKNTEKEELKPSNV 105
++KEE + E +E E E E EEE E KN + + P N
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENG 430
Score = 29.6 bits (67), Expect = 4.1
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEE-EADEGKNTEKEE 99
+++ + +++E E EE E + EEE E + + ++K
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNV 420
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 29.7 bits (67), Expect = 2.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E ++D+ +E EEE+EDE E E +D
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.6 bits (69), Expect = 2.2
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
EK K+E E E EE +E+E K E E+EA E K+E+
Sbjct: 541 QEKLKKELEQE-MEELKERERNKKLELEKEAQEALKALKKEV 581
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 30.1 bits (68), Expect = 2.3
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEE-EADEGKNTEKEELKPS 103
E+EE E +E++EDE EE+E E E + E+ E+K S
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKAS 76
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 30.0 bits (67), Expect = 2.3
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
+ E +E E K+E+ +++ E E++ GK +E + ++V
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASV 73
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 30.1 bits (68), Expect = 2.4
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 98 EELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN 142
EELK P VL + L + +R +++GA+ +GK+T + A++G +N
Sbjct: 111 EELKLPE--VLKD--LALAKRGLVIIVGATGSGKSTTMAAMIGYRN 152
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 30.1 bits (68), Expect = 2.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ E+ EE+ +E EDE + E+E E + + E+
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 29.4 bits (66), Expect = 5.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L ++EEEE +E EE E E + EE+A + E
Sbjct: 388 LISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPE 428
Score = 29.0 bits (65), Expect = 5.4
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEE---EEADEGKNTEKEELKPSN 104
++E EE E+ E E++ + E E + E EE +P
Sbjct: 397 ALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 29.0 bits (65), Expect = 5.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
++ E E++ + E E + E+E+E +E + E+EE +
Sbjct: 408 AEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 28.6 bits (64), Expect = 7.3
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L E E+ + EED E ++ ++E+E + E+E
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2) GTPases
are members of the Arf family that bind GDP and GTP with
very low affinity. Unlike most Arf family proteins, Arl2
is not myristoylated at its N-terminal helix. The
protein PDE-delta, first identified in photoreceptor rod
cells, binds specifically to Arl2 and is structurally
very similar to RhoGDI. Despite the high structural
similarity between Arl2 and Rho proteins and between
PDE-delta and RhoGDI, the interactions between the
GTPases and their effectors are very different. In its
GTP bound form, Arl2 interacts with the protein Binder
of Arl2 (BART), and the complex is believed to play a
role in mitochondrial adenine nucleotide transport. In
its GDP bound form, Arl2 interacts with tubulin- folding
Cofactor D; this interaction is believed to play a role
in regulation of microtubule dynamics that impact the
cytoskeleton, cell division, and cytokinesis.
Length = 173
Score = 29.6 bits (67), Expect = 2.4
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 115 KRREFFVL-LGASSAGKTTLLKAIVGLKNISQ 145
K RE +L LG +AGKTT+LK G ++IS
Sbjct: 11 KEREMRILMLGLDNAGKTTILKKFNG-EDIST 41
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+K +E+ E E E E+++E + E E+ + + EL+
Sbjct: 6 QKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+K+ E D +EE E ++ EE+++ K+ EK E +
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQE 74
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 30.3 bits (69), Expect = 2.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI 137
E + + V N+ L RR ++ G + GK+T L+ +
Sbjct: 589 EAVLDNGFVPNDIDLSGNRR-IILITGPNMGGKSTYLRQV 627
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 28.5 bits (64), Expect = 2.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNI 143
V++G +GK++LL +VG +
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFP 25
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
L+G + GK+TL+ A+ G K
Sbjct: 3 ALVGRPNVGKSTLINALTGAK 23
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 29.5 bits (66), Expect = 2.9
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 59 LEKEKEEEEDEGKEE-EEEKEDEGKKE 84
LE+EKE++++ KEE E +K++ K+E
Sbjct: 93 LEEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 30.2 bits (68), Expect = 2.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 120 FVLLGASSAGKTTLLKAI 137
F + G + AGKTTLL AI
Sbjct: 33 FAITGPTGAGKTTLLDAI 50
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 30.0 bits (67), Expect = 2.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
Y + +EE DE ++++ D + E E EA G+
Sbjct: 49 YPRSCQGQEEPDEKTQDQQSLSDVERAEPEVEASRGR 85
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 30.0 bits (68), Expect = 2.9
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 83 KEEEEEADEGKNTE-KEELKP-SNVVLNNCSLVVKRREFFVLLGASS-AGKTTLLKAIVG 139
KE+E+E KN KE+LK S + NN + + +LL S +GKT L +I G
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAG 261
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 29.0 bits (65), Expect = 3.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+E E+E+ E +E EEKE K+E++E E K EK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 28.6 bits (64), Expect = 4.4
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+E ++E++E E +++E +A + K +KE+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 29.3 bits (65), Expect = 3.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ + EEE +EEE +E E K + + E +E + E++E
Sbjct: 67 ERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQE 106
Score = 28.1 bits (62), Expect = 6.0
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ + +EE+ +E+EE+ + + ++EE++E +E + +K++
Sbjct: 73 EEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQK 112
Score = 27.8 bits (61), Expect = 8.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
K + EE +EEE +++E + E+EE + K E+E
Sbjct: 61 KRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEE 98
Score = 27.8 bits (61), Expect = 9.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 60 EKEKEEEEDEGKEEEEEK---EDEGKKEEEEEADEGKNTEKEE 99
E+++ E E+ + EE+ E+E +++EEE A E + K +
Sbjct: 51 EQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRK 93
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 29.6 bits (67), Expect = 3.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 50 YELTLECYTLEKEKEEEEDEGKEE--EEEKEDEGKKEEEEEADEGKNTEKEELK 101
+EL L E+EEEE E EE EE+ D ++ E + E+EEL+
Sbjct: 145 FELELP------EEEEEEPEEMEEELEEDAADRDARKRAAEEAK----EQEELR 188
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 30.2 bits (68), Expect = 3.1
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
+E E EDE +EE+E+ +D+G +E+E+ D TE
Sbjct: 132 REDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATE 167
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.0 bits (68), Expect = 3.2
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
L++EKEE+E +++ K KK+EE++ E + EK ++ P+
Sbjct: 552 ELQREKEEKEALKEQKRLRKL---KKQEEKKKKELEKLEKAKIPPA 594
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 29.6 bits (67), Expect = 3.4
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
+ KE + + + +EEE ++E + ++++E K+T +E K + VL
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEED---DNDDSEENKDTVEEFPKARDEVLEQ 105
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.4 bits (67), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
VL G S GK+TLL A+ + GEI
Sbjct: 168 VLAGQSGVGKSTLLNALAPDLELKTGEI 195
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
E E E E DE EE + + + + ++ A+ TE
Sbjct: 350 EESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 29.5 bits (66), Expect = 3.8
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+E +EE E + E +E E E E + + +
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 28.4 bits (63), Expect = 8.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E EE EDE + +E E+ + E E +
Sbjct: 346 ESTDEESEDEVEIDESVIEEVAEMELLEVQVD 377
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 29.1 bits (66), Expect = 3.5
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL 151
++ V+ G + GKTT LKA + + L
Sbjct: 12 HVLTSGDRVAVVQGPAGTGKTTSLKAAREAWEAAGYRVIGL 52
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 29.4 bits (66), Expect = 3.6
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
L+ G+ +++ IA+ ++P+L+I DEP ++P + +++ LL
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL 201
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 28.8 bits (65), Expect = 3.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 66 EEDEGKEEEEEKEDEGKKEEEEEADEG 92
E++ +EEE E + + EE EE ++G
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDG 27
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.6 bits (66), Expect = 3.6
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 59 LEKEKEEE-EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+EK E+E DE +E+ ++ +++G++ + EE EG +K++ K
Sbjct: 207 VEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTK 250
Score = 29.3 bits (65), Expect = 5.3
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 51 ELTLECYTLEKE--KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
EL +E T EKE E+EED K +E+ +E K EE +E DEGK + +++K
Sbjct: 204 ELMVE-KTTEKEVTDEDEEDTKKADED--GEEPKVEEVKEGDEGKKKKTKKVK 253
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 28.9 bits (65), Expect = 3.7
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
++EED +E+ ++ + E EE A N K E +
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEM 58
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 28.9 bits (64), Expect = 3.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E+E++E++ +E EE+ +E + E E E +E E
Sbjct: 153 EREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETE 189
Score = 28.1 bits (62), Expect = 8.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 59 LEKEKEEE---EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+E E+ EE E E +EE+E + +E EE+ + E + E++E
Sbjct: 142 MEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDE 185
Score = 28.1 bits (62), Expect = 8.9
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 47 LLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L++ + +E E+E+ EE E E EEK DE + +EE+E + + T +E+
Sbjct: 121 LIIRQEQIEKARQEREELEERMEW-ERREEKIDEREDQEEQEREREEQTIEEQ 172
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.8 bits (67), Expect = 3.9
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ 145
E N + L ++ N + R +LG GKTTLL I I+Q
Sbjct: 216 ISEEKNNINEKTSNLDNTSAFTENS---INRPPIVTILGHVDHGKTTLLDKIRK-TQIAQ 271
Query: 146 GEI 148
E
Sbjct: 272 KEA 274
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEA 89
EKEE E + E+E E K+EE EA
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREA 109
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 28.0 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 61 KEKEEEEDEGKEE-EEEKEDEGKKEEEEEADEGKNTEKEEL 100
KEKEE D+ + E+E+E K+ + + ++ K TE+E L
Sbjct: 16 KEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESL 56
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.5 bits (66), Expect = 4.1
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E++K+ E + K E + + E +++A+E +E
Sbjct: 143 AEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 27.8 bits (62), Expect = 4.1
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
K+ + E E K+++++ +G E K S+ ++N
Sbjct: 34 AKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCKDSSFLVNK 83
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+ K+E E E EK + K+E++E+ ++ E +E P+
Sbjct: 47 FKDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKEWDPNE 92
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 28.8 bits (65), Expect = 4.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEE 87
E+EKE+++ KEE++ ++E +K EE
Sbjct: 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function
unknown].
Length = 397
Score = 29.3 bits (65), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ + +E +G + + D G+K EE DE N E E K
Sbjct: 39 QSMEPQETSKGTSNDTKDPDNGEKNEEAAIDENSNVEAAERK 80
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
L+ E E +++E +EEEEE + E +E+E DE
Sbjct: 2 LDTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDE 34
Score = 27.0 bits (60), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E+EEEE+E + E+ +++ +E E D+
Sbjct: 11 EEEEEEEEEDDLEDLSDEDEFIDEAEAEDD 40
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37.
Length = 93
Score = 27.4 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD 90
E E E E +E+ E +E+ K++EEEE D
Sbjct: 63 AIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 29.3 bits (66), Expect = 4.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAI 137
L ++ R+ ++ G +++GKTTLL A+
Sbjct: 138 LAIEARKSIIICGGTASGKTTLLNAL 163
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 29.6 bits (67), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
T E E+ EEE + + E + K+E+E +E + EE
Sbjct: 229 TSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEE 270
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 29.1 bits (65), Expect = 4.7
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
KEK E++ +E ++ E K E ++ E E++
Sbjct: 176 DMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDN 216
Score = 28.7 bits (64), Expect = 5.4
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
++++ E+E+E +E EK + K E ++ +E + E ++ S + + +
Sbjct: 177 MKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.2 bits (65), Expect = 4.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 62 EKEEEEDEGKE-EEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E+E+ +DE + EEE+E + + E + E + T+K++L
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDL 231
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 28.1 bits (63), Expect = 4.9
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+K+K + D+ +++ D+ EE+ + ++ ++ E EE
Sbjct: 90 KKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.9 bits (65), Expect = 5.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEG----KKEEEEEADEGKNTEKEEL 100
E +K +EE E + E+E +E+ KK E AD E E L
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTAD--SKREMEVL 151
Score = 28.2 bits (63), Expect = 8.9
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 50 YELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEE----------EADEGKNTEKEE 99
LE ++KEEEE+E ++E K E EE E DE N
Sbjct: 169 VNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPS 228
Query: 100 LKPSNVVLNN 109
K +
Sbjct: 229 PKSGSSSPAK 238
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.9 bits (65), Expect = 5.1
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 58 TLEKEKEEEEDEGKEEEEEKE--DEGKKEEEEEADEGKNTEKEELKPSNVVL 107
+ E + +D+ E+ E + D +E+ ++ +T+ NV+L
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD-------NVML 292
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.7 bits (64), Expect = 5.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 58 TLEKE-KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNT----EKEELK 101
+EKE +EEE + ++ EG E+E+ E EELK
Sbjct: 3 EVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELK 51
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 28.3 bits (63), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E + +E EEDE + E+ E + + EE EE +E
Sbjct: 19 DEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEE 57
Score = 28.0 bits (62), Expect = 6.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
+E+++EE ED +EE E+ + EEE A +
Sbjct: 31 VEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSS 70
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 28.9 bits (65), Expect = 5.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ E+E++ E ++ + K+E E + K E EELK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAK----KKKEMEELK 108
>gnl|CDD|234401 TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb. This
model represents the C-terminal domain or EccCb subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 566
Score = 29.2 bits (66), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 119 FFVLLGASSAGKTTLLKAIV 138
++ G S +GKTTLL+AI
Sbjct: 365 HLLVFGDSESGKTTLLRAIA 384
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 29.0 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
LE + + +EEEEE E+E ++EEEEEA+E +
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 28.9 bits (65), Expect = 5.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEE--EEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+Y+ E T E + EE DE E EE +D G +E ++ + +E+K S
Sbjct: 145 IYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSV 202
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.2 bits (65), Expect = 5.3
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+ + D +E E + E + EK P
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIP 424
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.5 bits (66), Expect = 5.4
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEK---EDEGKKEEEEEADE 91
E + E + LE+++ E E KEE E + E++ ++EEE+ A E
Sbjct: 243 EHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAME 286
>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic
MutS4 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 204
Score = 28.5 bits (64), Expect = 5.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI 137
N + N+ L F ++ G + +GK+T LK I
Sbjct: 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQI 49
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 28.5 bits (64), Expect = 5.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+E E E+ E EE E+K +E +++E++A+ K K
Sbjct: 18 EEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAK 59
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 28.8 bits (64), Expect = 5.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
Y E + +E +EEE D+ E+ ++ +
Sbjct: 269 YGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNT 303
Score = 28.4 bits (63), Expect = 9.1
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
E +D+ + ++E ++++ D
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNH 305
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 28.6 bits (64), Expect = 5.8
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVK 115
EKE+ E + + E+ +E K+ + E + +NT E + L++ L +
Sbjct: 73 EKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKLATE 128
Score = 28.2 bits (63), Expect = 7.1
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
K+K++E++E E E+ + ++ EE + K + + V
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 29.0 bits (65), Expect = 5.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+E+ EEEE+E +EEEEE + + EE G
Sbjct: 398 VERWAEEEEEEEEEEEEEAAEA--EAPMEEPVPG 429
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.8 bits (65), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE---GKKEEEEEADEGKNTEKEE 99
KEK E + K E E E E K++EEE+ E + +E
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 28.2 bits (63), Expect = 6.1
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
+ E +E K+ ++ + E K+ ++ + K +E+ K +V
Sbjct: 103 NGDSEGLLEELKKHRDKLKKEQKELRKKLDELEK---EEKKKIWSV 145
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 28.6 bits (65), Expect = 6.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 115 KRREFFV--LLGASSAGKTTLLKAIVG 139
KR L+G ++AGK+TL A+ G
Sbjct: 37 KRSGVPTVALVGYTNAGKSTLFNALTG 63
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 27.1 bits (60), Expect = 6.2
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
LE+ +EE G+E +E E+E +KE E+ +EG+ E E +K
Sbjct: 37 LEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEK-EIEAMK 78
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 28.3 bits (62), Expect = 6.3
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E+EK++ +E K E +++E K EEE +AD+
Sbjct: 141 EEEKKDAVEETKPSESAQQEEAK-EEEAKADQ 171
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 28.9 bits (64), Expect = 6.3
Identities = 10/55 (18%), Positives = 31/55 (56%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVV 114
++ + E++ +E++ + +D + +E+ + E ++ +E+ +P N + + L V
Sbjct: 440 QESQSEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEEDGQPKNTEIESRKLTV 494
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37 pfam03234.
Length = 89
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
K E E E KE EEE +E ++EE E ++
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEE 85
EKE +E E+E EEE EKE+ +++E
Sbjct: 64 EKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
Length = 403
Score = 29.0 bits (65), Expect = 6.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
F L G +AG+ + + + +S G+ L HPAS+ H T Y P+E A G
Sbjct: 316 FELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHST------YTPEERAEHG 368
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 29.1 bits (65), Expect = 6.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 58 TLEKEK-EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNT 95
++E E +E ED +E EE G EEE++AD+ KN
Sbjct: 694 SIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNE 732
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 28.2 bits (63), Expect = 6.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
K K++E D +E +E++ D + +EEEE DE
Sbjct: 99 DIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDE 131
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 28.9 bits (65), Expect = 6.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
KE E E +E + ++ K E EE + KEE+
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEID 42
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 29.0 bits (65), Expect = 6.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 56 CYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+L+KE EE+ E K+E E+ + ++++E+E DE + + E
Sbjct: 400 VRSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEM 443
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 28.4 bits (64), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKN 142
V+ R ++ G + +GKTTLL A++ N
Sbjct: 126 VQARGNILVSGGTGSGKTTLLYALLNEIN 154
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.8 bits (64), Expect = 6.9
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EK K +EE+ EEE KE+ EEE+ E + KEE
Sbjct: 795 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 834
Score = 28.8 bits (64), Expect = 8.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 47 LLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LL + +E + +EE E + E +KEEE A K ++EE
Sbjct: 227 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and
L12p. Ribosomal proteins P1 and P2 are the eukaryotic
proteins that are functionally equivalent to bacterial
L7/L12. L12p is the archaeal homolog. Unlike other
ribosomal proteins, the archaeal L12p and eukaryotic P1
and P2 do not share sequence similarity with their
bacterial counterparts. They are part of the ribosomal
stalk (called the L7/L12 stalk in bacteria), along with
28S rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial
ribosomes, L7/L12 homodimers bind the extended
C-terminal helix of L10 to anchor the L7/L12 molecules
to the ribosome. Eukaryotic P1/P2 heterodimers and
archaeal L12p homodimers are believed to bind the L10
equivalent proteins, eukaryotic P0 and archaeal L10e,
in a similar fashion. P1 and P2 (L12p, L7/L12) are the
only proteins in the ribosome to occur as multimers,
always appearing as sets of dimers. Recent data
indicate that most archaeal species contain six copies
of L12p (three homodimers), while eukaryotes have two
copies each of P1 and P2 (two heterodimers). Bacteria
may have four or six copies (two or three homodimers),
depending on the species. As in bacteria, the stalk is
crucial for binding of initiation, elongation, and
release factors in eukaryotes and archaea.
Length = 105
Score = 27.2 bits (60), Expect = 7.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 72 EEEEEKEDEGKKEEEEEADE 91
E EK +E K+EEEEE DE
Sbjct: 79 AEPAEKAEEAKEEEEEEEDE 98
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 28.2 bits (64), Expect = 7.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V+ G S AGK+TL+KA++
Sbjct: 3 IVISGPSGAGKSTLVKALL 21
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 27.6 bits (62), Expect = 7.4
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E ++ +E++ +EEE K ++ +E E ++
Sbjct: 94 EAQRARDEEKKLDEEEAKRQH-EEAKEREREK 124
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.7 bits (65), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
LLG+S GK+TL+ A++G + G +
Sbjct: 199 ALLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V. This domain is found in proteins
of the MutS family (DNA mismatch repair proteins) and is
found associated with pfam01624, pfam05188, pfam05192
and pfam05190. The mutS family of proteins is named
after the Salmonella typhimurium MutS protein involved
in mismatch repair; other members of the family included
the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have
various roles in DNA repair and recombination. Human MSH
has been implicated in non-polyposis colorectal
carcinoma (HNPCC) and is a mismatch binding protein. The
aligned region corresponds with domain V of Thermus
aquaticus MutS as characterized in, which contains a
Walker A motif, and is structurally similar to the
ATPase domain of ABC transporters.
Length = 235
Score = 28.3 bits (64), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI 137
L N V N+ SL +R ++ G + GK+T L+ +
Sbjct: 26 LDAGNFVPNDVSLGKERSRILLITGPNMGGKSTYLRQV 63
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 28.5 bits (63), Expect = 7.8
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEE---EEEADEGKNTEKEEL------K 101
+L LE +++ + EEE KEE + KKEE E G+ + L K
Sbjct: 353 DLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQSHKGLSELIRQK 412
Query: 102 PSNVVLNNCSL--VVKRREFFVLLGASSAGKTT 132
+ L V+ E V S AG+T
Sbjct: 413 EKELERLTVELDDKVRFGERLVERPGSGAGRTA 445
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 27.6 bits (62), Expect = 7.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEE 86
LE+E E E E +E +EKE KK E
Sbjct: 97 LEEELREVEAEREEAVKEKEKLLKKVEA 124
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.9 bits (62), Expect = 7.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
EK+E + K E+ EKE +++E E+ + K +KE
Sbjct: 76 EKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKE 112
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.8 bits (64), Expect = 7.9
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ + ++ E ++ + E ++ ++E K ++ +A + K K K
Sbjct: 275 VAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEK 317
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 27.9 bits (62), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+E + +E +EE E E E EE E EK EL+ +N
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETP----EKSELELAN 40
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 26.9 bits (60), Expect = 8.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 73 EEEEKEDEGKKEEEEEADE 91
E K++E K+EEEEE+D+
Sbjct: 78 AAEAKKEEKKEEEEEESDD 96
Score = 26.9 bits (60), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 60 EKEKEEEEDEGKEEEEEKEDE 80
E +++E KEEEEE+ D+
Sbjct: 76 AAAAEAKKEEKKEEEEEESDD 96
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.3 bits (64), Expect = 8.3
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
LE++ EE+E+ E EE+ +EG++ EEEA+ E+E +
Sbjct: 293 LEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQR 335
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.7 bits (65), Expect = 8.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 56 CYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
Y+LEK +EE D+ E +++K +E E +E + +KEE++
Sbjct: 537 VYSLEKSLKEEGDKLPEADKKKVEE---AIEWLKEELEGEDKEEIE 579
>gnl|CDD|216937 pfam02224, Cytidylate_kin, Cytidylate kinase. Cytidylate kinase
EC:2.7.4.14 catalyzes the phosphorylation of cytidine
5'-monophosphate (dCMP) to cytidine 5'-diphosphate
(dCDP) in the presence of ATP or GTP.
Length = 158
Score = 27.7 bits (62), Expect = 8.5
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 251 VGVDPLVRKRMWDLLQVFVGKGRTVI----MTTQYIEEA 285
V P VR + L + G V+ + T +A
Sbjct: 43 VAAIPAVRAILVKLQRQLAKNGNIVMEGRDIGTVVFPDA 81
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 27.6 bits (62), Expect = 8.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 188 FFGMIYGMDESIWLFQMRKYS-------HVLKLPNLERPVKYLSGGQKRRLSF---TIAI 237
F ++ D L + V P LE L+GG + + F IA+
Sbjct: 78 FEELLPNGDPGTVLDYLEALGDGVGSVLLVGHNPLLEELALLLAGGARLPVKFPTSGIAV 137
Query: 238 L---------HKPQLIILDEPCVGVD 254
L + L L P V
Sbjct: 138 LEFDGKWAPGGEGTLAWLVSPLVPRL 163
>gnl|CDD|225925 COG3390, COG3390, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 196
Score = 27.8 bits (62), Expect = 8.6
Identities = 14/63 (22%), Positives = 20/63 (31%)
Query: 38 HKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
+ LWVL E TLE +E ++E E EA E + +
Sbjct: 131 DEEARDLWVLETAEQTLERIKAAREAQKEYALLAILAYSGVIAEYAEGVIEALERYDEQY 190
Query: 98 EEL 100
Sbjct: 191 GFE 193
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 28.6 bits (64), Expect = 8.7
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
LE Y + + +E E+D+ E+E++ EDE + E+E+E
Sbjct: 875 DLEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine
triphosphatases (GTPases). Rab GTPases form the largest
family within the Ras superfamily. There are at least 60
Rab genes in the human genome, and a number of Rab
GTPases are conserved from yeast to humans. Rab GTPases
are small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular organisms
possess 5-20 Rab members, several have been found to
possess 60 or more Rabs; for many of these Rab isoforms,
homologous proteins are not found in other organisms.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Since crystal
structures often lack C-terminal residues, the lipid
modification site is not available for annotation in
many of the CDs in the hierarchy, but is included where
possible.
Length = 159
Score = 27.4 bits (62), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 120 FVLLGASSAGKTTLLK 135
VL+G S GKT+LL
Sbjct: 3 IVLIGDSGVGKTSLLL 18
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 26.9 bits (60), Expect = 9.1
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
E+ + E+EE+++D +++++ D+
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDD 77
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 27.9 bits (63), Expect = 9.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
EK+EE E KE+E + +E+EEE +E +++EL
Sbjct: 102 EKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQEL 140
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 9.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEE---EKEDEGKKEEEEEADEGKNTEKEELK 101
E L + E E E +E+ E E E+E ++ EE A+ N++ ELK
Sbjct: 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE--LNSKLAELK 585
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 27.9 bits (62), Expect = 9.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158
++ G + +GKTT+L AI W L G + +
Sbjct: 21 LTLIYGPNGSGKTTILDAIR----------WALYGKTSRL 50
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 27.7 bits (62), Expect = 9.5
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+L ++ E E EEE E EE++E+E+ EE EA + K EK++
Sbjct: 128 KLKIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKK 176
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 27.5 bits (61), Expect = 9.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 116 RREFFVLLGASSAGKTTLLKAI 137
+L G S GKT+LL+ +
Sbjct: 23 GPPSVLLTGPSGTGKTSLLREL 44
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.9 bits (63), Expect = 10.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 120 FVLLGASSAGKTTLLKAI 137
VL G S GK+TL+KA+
Sbjct: 7 IVLSGPSGVGKSTLVKAL 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,473,461
Number of extensions: 2351457
Number of successful extensions: 11847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9024
Number of HSP's successfully gapped: 1454
Length of query: 457
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 357
Effective length of database: 6,502,202
Effective search space: 2321286114
Effective search space used: 2321286114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)