RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10858
(457 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 196 bits (500), Expect = 4e-60
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 9/231 (3%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+L S ++ E F L+G + AGKTT L+ I L S G + V G
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVEEPHE 85
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----R 218
+ Y+P+E + + E L F Y S ++ L
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKIKD 142
Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
V S G R+L A++ P+L ILDEP G+D L + + +L+ +G T++++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDD 328
+ + E +A ++ G I+ + + K +Y + +VF ++
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCS 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 160 bits (408), Expect = 5e-47
Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
VL ++ +++ G + GKTTLLK I +GEI G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG---VPI--TKV 76
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---RPV 220
K+ ++P+E+ + ++++++ L +YG+ + + L+ + + +
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-----KNEIMDALESVEVLDLKKKL 131
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTT 279
LS G RR+ +L ++ +LD+P V +D + ++ + + KG +I +
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
Query: 280 QYIEEANDASEVAFLYKGRIIA 301
+ + + L+K
Sbjct: 192 EELSYCD---VNENLHKYSTKI 210
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 139 bits (352), Expect = 4e-38
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--K 161
+L S + + + ++L G + AGKTTLL + + + G + + G P + + +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93
Query: 162 TAGSKVGYMPQELAM--FGELTIKET-LN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
T +G++ L + + ++ F I G+ + I + +LKL +
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-GVYQDIDDEIRNEAHQLLKLVGMS 152
Query: 218 ----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV--GK 271
+ + YLS G+K+R+ A++ +PQ++ILDEP G+D + R+ + +L
Sbjct: 153 AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYP 212
Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
+I T +IEE + L G+ I Q + + + +S F
Sbjct: 213 TLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS---ENMSRFF 260
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 114 bits (287), Expect = 3e-29
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 21/215 (9%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
L N SLV+ E ++ G + +GK+TLL+ + GL + G++ G
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY-DGERKKG--YE 75
Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---- 216
+G Q E F E + + + F + D + ++ L
Sbjct: 76 IRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDP----VPLVKKAMEFVGLDFDS 130
Query: 217 --ERPVKYLSGGQKRRLSFTIA-IL-HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
+R +LSGG+KRR++ IA ++ H+P ++ILDEP VG+D + + +++ + G
Sbjct: 131 FKDRVPFFLSGGEKRRVA--IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 273 RTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
+TVI+ + IE N V L KG+ + +
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRM 223
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 113 bits (284), Expect = 9e-29
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
L N +L V E ++LG + +GKTTLL+AI GL G I++ G
Sbjct: 18 RFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLLP-YSGNIFI-NGMEVRKIRNYI 74
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVK 221
+P+ + +T+ + + + + G+D + + LKL L R +
Sbjct: 75 R-YSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDL----FLEMLKALKLGEEILRRKLY 127
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
LS GQ + ++A+ +P+++ LDEP VD R + ++ + G+ I+ T
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE 184
Query: 282 IEEANDASE-VAFLYKGRIIAQ-DSPD 306
++ N E A+ G + S
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPISVS 211
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 104 bits (261), Expect = 2e-25
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L ++ +KR E +LG + GK+TL + G+ S G I P K
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-DNKPIDYSRK 77
Query: 162 TAG---SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPN 215
+G + Q + +F ++ + ++F + + E ++RK + LK
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNALKRTG 132
Query: 216 LE----RPVKYLSGGQKRRLSFTIA-ILH-KPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
+E +P LS GQK+R++ IA +L +P+++ILDEP G+DP+ + LL
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVA--IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 270 GK-GRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
+ G T+I+ T I+ V + +GR+I Q +P
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 101 bits (253), Expect = 1e-24
Identities = 44/213 (20%), Positives = 83/213 (38%), Gaps = 27/213 (12%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
N + + + + + +LG + GK+TLL ++G+ QG+I V
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----------- 66
Query: 164 GSKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
+G++PQ + ++ + +N F D + + + L L +
Sbjct: 67 --SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY----LNLTH 120
Query: 216 L-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGR 273
L +R LSGGQ++ + AI + +LI+LDEP +D + + LL +
Sbjct: 121 LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180
Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
TV+ TT + + L +
Sbjct: 181 TVVFTTHQPNQVVAIANKTLLLNKQNFKFGETR 213
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 100 bits (250), Expect = 7e-23
Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 19/212 (8%)
Query: 67 EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGAS 126
DE K +E D ++ + + K K + L + K E +LG +
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK---KLGDFQLVVDNGEAKEGEIIGILGPN 303
Query: 127 SAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186
GKTT + +VG +G + + Y PQ + + T+++
Sbjct: 304 GIGKTTFARILVGEITADEGSVTP------------EKQILSYKPQRIFPNYDGTVQQ-- 349
Query: 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLII 245
+ S + + + L L L E V LSGG+ ++L + + L +
Sbjct: 350 -YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408
Query: 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
LD+P +D R + ++ + + V
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Score = 80.1 bits (198), Expect = 3e-16
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 13/177 (7%)
Query: 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ 172
K +LG + GKTT+LK + G + G+ G + + G ++ +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG-KDEVLKRFRGKEIYNYFK 79
Query: 173 ELAMFGELTIKET--------LNFFGMI-YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
EL EL I G + + + + + +L + NL +
Sbjct: 80 EL-YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
LSGG +RL ++L + + I D+P +D R M ++ + K + VI+
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVD 194
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 96.3 bits (240), Expect = 2e-21
Identities = 41/214 (19%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 71 KEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGK 130
+ + ++ + + A + +K + VLN E V++G + GK
Sbjct: 335 QFRIADATEDLQNDSASRAFSYPSLKK---TQGDFVLNVEEGEFSDSEILVMMGENGTGK 391
Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190
TTL+K + G +G+ V PQ++A T+++ FF
Sbjct: 392 TTLIKLLAGALKPDEGQD-------------IPKLNVSMKPQKIAPKFPGTVRQL--FFK 436
Query: 191 MIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246
I G + + + V+K + ++ V++LSGG+ +R++ +A+ + ++
Sbjct: 437 KIRGQFLN-----PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLI 491
Query: 247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTT 279
DEP +D R +++ F+ +T +
Sbjct: 492 DEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525
Score = 84.7 bits (210), Expect = 1e-17
Identities = 42/302 (13%), Positives = 102/302 (33%), Gaps = 27/302 (8%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-----KNISQGEIWV------ 150
+N + + + L+G + GK+T LK + G W
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 151 ----LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK 206
L + + + PQ + IK + G + + +++
Sbjct: 148 RGSELQNYFTKMLEDDIKA--IIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKR 204
Query: 207 YSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
Y +L+L N+ +R ++ LSGG+ +R + ++ + + + + DEP +D R ++
Sbjct: 205 YIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264
Query: 266 QVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-----KGRIIAQDSPDGFKSKYSMPKLSD 319
+ + + VI + + + V +Y G + S + + +
Sbjct: 265 RSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPA 324
Query: 320 VFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMG 379
+ + A+ ++ + + P ++K + N G +
Sbjct: 325 ENLRFRTEALQF--RIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILV 382
Query: 380 VV 381
++
Sbjct: 383 MM 384
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 91.1 bits (227), Expect = 4e-21
Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 25/215 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L S V+ E L+G + AGK+TLL + G+ + +G I G +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
Y+ Q+ + L + + L R LSG
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGA-LALDDK--LGRSTNQLSG 129
Query: 226 GQKRRLSF-------TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM- 277
G+ +R+ T QL++LDEP +D + + +L +G ++M
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 278 ------TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
T ++ A L G+++A +
Sbjct: 190 SHDLNHTLRH------AHRAWLLKGGKMLASGRRE 218
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 88.0 bits (219), Expect = 3e-19
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 37/225 (16%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHK 161
+ VLN+ SL + E ++GAS GKTTLL+ + G + GEI L G S
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS-LSGKTIFSKNTN 74
Query: 162 TAGSK--VGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS---------H 209
+ +GY+ QE +F LT+ N +G+ K
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYR--NIAYGL-----------GNGKGRTAQERQRIEA 121
Query: 210 VLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL 264
+L+L + R LSGGQ++R + A+ P+LI+LDEP +D +R+++ D+
Sbjct: 122 MLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181
Query: 265 LQVFVGKGRTVIMTT--QYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+ G++ + + + EEA A +A + +GRI+ SP
Sbjct: 182 IAALRANGKSAVFVSHDR--EEALQYADRIAVMKQGRILQTASPH 224
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 85.1 bits (211), Expect = 1e-18
Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 46/266 (17%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLL 123
+EG E EK + + + + VL + + ++R + +
Sbjct: 11 TAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVA 70
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
G++ AGKT+LL I+G S+G+I G ++ + Q + TIK
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPG-TIK 116
Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLK----------LPNL------ERPVKYLSGGQ 227
E N G+ Y DE +Y V+K E + LSGGQ
Sbjct: 117 E--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-LSGGQ 164
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGRTVIMTTQYIEEA 285
+ R+S A+ L +LD P +D L K +++ +T I+ T +E
Sbjct: 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE--SCVCKLMANKTRILVTSKMEHL 222
Query: 286 NDASEVAFLYKGRIIAQDSPDGFKSK 311
A ++ L++G + ++
Sbjct: 223 KKADKILILHEGSSYFYGTFSELQNL 248
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 85.0 bits (211), Expect = 2e-18
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 41/225 (18%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ S ++ E LLG S +GKTT+L+ I GL+ ++G++W +GG +
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW-IGGKRVT--DLP 83
Query: 163 AGS-KVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS---------HVL 211
VG + Q A+F +T+ + N FG+ + ++ +L
Sbjct: 84 PQKRNVGLVFQNYALFQHMTVYD--NVSFGL-----------REKRVPKDEMDARVRELL 130
Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL-- 264
+ LE R LSGGQ++R++ A+ +PQ+++ DEP +D +R+ + +
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 265 LQVFVGKGRTVIMTT--QYIEEANDAS-EVAFLYKGRIIAQDSPD 306
+ +G T + T Q EEA + + V L++G + +P+
Sbjct: 191 VHDEMGV--TSVFVTHDQ--EEALEVADRVLVLHEGNVEQFGTPE 231
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 86.6 bits (215), Expect = 3e-18
Identities = 39/214 (18%), Positives = 89/214 (41%), Gaps = 21/214 (9%)
Query: 66 EEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGA 125
+E+ E + + + + E + + + L +++ E ++G
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390
Query: 126 SSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET 185
+ GKTT +K + G++ ++G++ V Y PQ + E T+ E
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYEL 437
Query: 186 LNFFGMIYG-MDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQL 243
+ ++ + + ++ K L + +L +R V+ LSGG+ +R++ +L +
Sbjct: 438 --LSKIDSSKLNSNFYKTELLKP---LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492
Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
+LDEP +D R + ++ + K +T +
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Score = 75.4 bits (186), Expect = 1e-14
Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------KNISQGEIWVLG--GHP 155
N + +VK ++G + GKTT +K + G ++ + + G+
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 156 ASIY-HKTAGSKVGYMPQE-------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY 207
Y + ++ + + A+ G ++E L +DE + K+
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKG--KVRELLK------KVDE------VGKF 209
Query: 208 SHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
V+K LE R + LSGG+ +R++ A+L K DEP +D R ++
Sbjct: 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269
Query: 264 LLQVFVGKGRTVIMTT 279
+++ +G+ V++
Sbjct: 270 VIRRLANEGKAVLVVE 285
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 83.8 bits (208), Expect = 7e-18
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 46/225 (20%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASI 158
N L+N SL V+ E+FV+LG + AGKT L+ I G G I L G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSP-- 69
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS------HVL 211
K + ++ Q ++F + +K+ N FGM +M+K
Sbjct: 70 -EK---HDIAFVYQNYSLFPHMNVKK--NLEFGM-----------RMKKIKDPKRVLDTA 112
Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL-- 264
+ +E R LSGG+++R++ A++ P++++LDEP +DP ++ L
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172
Query: 265 LQVFVGKGRTVIMTT--QYIEEANDASE-VAFLYKGRIIAQDSPD 306
L TV+ T Q EA ++ +A + G++I P+
Sbjct: 173 LHKKNKL--TVLHITHDQ--TEARIMADRIAVVMDGKLIQVGKPE 213
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 81.3 bits (202), Expect = 1e-17
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 23/214 (10%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHK 161
+ L V R + L+GA+ AGKTT L AI GL +G+I G PA H
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA---HV 77
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL-ER- 218
+ +P+ +F ELT+ E L E I R + L P L ER
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI----KRDLEWIFSLFPRLKERL 133
Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
LSGG+++ L+ A++ +P+L+++DEP +G+ P++ +++++Q +G T++
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 277 MTTQYIEEANDASEVA----FLYKGRIIAQDSPD 306
+ Q A A +VA L G+I+ +
Sbjct: 194 LVEQ---NALGALKVAHYGYVLETGQIVLEGKAS 224
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 82.7 bits (205), Expect = 4e-17
Identities = 43/215 (20%), Positives = 89/215 (41%), Gaps = 21/215 (9%)
Query: 65 EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLG 124
++E+ E K + + E E + + + L +K+ E ++G
Sbjct: 260 KDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVG 319
Query: 125 ASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184
+ GKTT +K + G++ ++G+I V Y PQ + E T+ E
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYE 366
Query: 185 TLNFFGMIYG-MDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQ 242
+ ++ + + ++ K L + +L +R V LSGG+ +R++ +L
Sbjct: 367 L--LSKIDASKLNSNFYKTELLK---PLGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421
Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
+ +LDEP +D R + ++ + K +T +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Score = 70.8 bits (174), Expect = 3e-13
Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 28/193 (14%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------KNISQGEIWVLG--GHP 155
N + VVK ++G + GK+T +K + G + + + G+
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
Query: 156 ASIY-HKTAGSKVGYMPQE-------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY 207
Y K ++ + + A+ G + E L ++E +
Sbjct: 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKG--KVIELLKKADETGKLEEVV-------- 143
Query: 208 SHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
L+L N+ ER +++LSGG+ +R++ A+L DEP +D R ++
Sbjct: 144 -KALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202
Query: 267 VFVGKGRTVIMTT 279
+G++V++
Sbjct: 203 RLSEEGKSVLVVE 215
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 78.7 bits (195), Expect = 8e-17
Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 29/204 (14%)
Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSKVGYMPQ 172
R++ VLLG + AGK+ L+ I G+ +GE+ + G P + +G++PQ
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---ER---RGIGFVPQ 77
Query: 173 ELAMFGELTIKETLNF-FGM-IYGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGG 226
+ A+F L++ N +G+ E + R+ + + + R LSGG
Sbjct: 78 DYALFPHLSVYR--NIAYGLRNVERVE-----RDRRVREMAEKLGIAHLLDRKPARLSGG 130
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL--LQVFVGKGRTVIMTTQYIE 283
+++R++ A++ +P+L++LDEP VD + + +L +Q ++ T +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDLI 188
Query: 284 EANDAS-EVAFLYKGRIIAQDSPD 306
EA + EVA + GRI+ +
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLK 212
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 73.4 bits (181), Expect = 4e-15
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 47/223 (21%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+ VL + + ++R + + G++ AGKT+LL I+G S+G+I G
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLN-FFGMIYGMDESIWLFQMRKYSHVLK------- 212
++ + Q + TIKE N FG+ Y DE +Y V+K
Sbjct: 70 -----RISFCSQFSWIMPG-TIKE--NIIFGVSY--DE-------YRYRSVIKACQLEED 112
Query: 213 ---LPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
E + LSGGQ+ R+S A+ L +LD P +D L K +++
Sbjct: 113 ISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171
Query: 264 LLQVFVG--KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304
+T I+ T +E A ++ L++G +
Sbjct: 172 --SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGT 212
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 72.5 bits (179), Expect = 1e-14
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 45/222 (20%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L + S + G S GK+T+ + + GEI + G P I + + +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQP--IDNISLEN 73
Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMIYGM-----DESIWLFQMRKYSH--VLKLPN 215
++G++ Q+ A+ TI+E L YG+ DE +W ++ V +P+
Sbjct: 74 WRSQIGFVSQDSAIMAG-TIRENL-----TYGLEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 216 L------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLL 265
ER VK +SGGQ++RL+ A L P++++LDE +D +V+K + L+
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 266 QVFVGKGRTVI-----MTTQYIEEANDASEVAFLYKGRIIAQ 302
KGRT + ++T I DA ++ F+ KG+I
Sbjct: 187 -----KGRTTLVIAHRLST--IV---DADKIYFIEKGQITGS 218
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 73.2 bits (180), Expect = 2e-14
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 29/257 (11%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L N S + + LLG + +GK+TLL A + L N GEI + G SI +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRK 94
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW----LFQMRKYSHVLKLPN-LERPV 220
G +PQ++ +F T ++ L+ + D+ IW +R S + + P L+ +
Sbjct: 95 AFGVIPQKVFIF-SGTFRKNLDPNAA-HS-DQEIWKVADEVGLR--SVIEQFPGKLDFVL 149
Query: 221 KY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKG 272
LS G K+ + ++L K ++++LDEP +DP ++R+ L Q F
Sbjct: 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT---LKQAF--AD 204
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSS 332
TVI+ IE + + + + ++ DS +D F +
Sbjct: 205 CTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL-----YHYPADRFVAGFIGSPKMN 259
Query: 333 GPPAETSKAEEPEVKLE 349
P + + +V++E
Sbjct: 260 FLPVKVTATAIDQVQVE 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 71.0 bits (175), Expect = 3e-14
Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 49/227 (21%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+ LN + + ++G GK++LL A++ + +G + + G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLN-FFGMIYGMDESIWLFQMRKYSHVLK------- 212
V Y+PQ+ + + +++E N FG +E Y V++
Sbjct: 67 -----SVAYVPQQAWIQND-SLRE--NILFGCQL--EE-------PYYRSVIQACALLPD 109
Query: 213 ---LPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
LP+ E+ V LSGGQK+R+S A+ + + D+P VD V K +++
Sbjct: 110 LEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 264 LLQVFVGKG----RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
V KG +T I+ T + + + G+I S
Sbjct: 169 --NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 69.9 bits (172), Expect = 1e-13
Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 59/244 (24%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPA 156
+ VL SL + + ++G+S +GK+T L+ I L+ S+G I V G
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 157 SIYHKTAGSKVGYMPQELAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
+++ + L M + +T+ E N + +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--N-----------VMEAPI----Q 120
Query: 210 VLKLP----------NLER-------PVKY---LSGGQKRRLSFTIAILHKPQLIILDEP 249
VL L L + KY LSGGQ++R+S A+ +P +++ DEP
Sbjct: 121 VLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 250 CVGVDP-LVRKRMWDLLQVFVG---KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304
+DP LV ++L++ +G+T+++ T + A +S V FL++G+I +
Sbjct: 181 TSALDPELVG----EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
Query: 305 PDGF 308
P+
Sbjct: 237 PEQV 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 1e-13
Identities = 50/432 (11%), Positives = 113/432 (26%), Gaps = 129/432 (29%)
Query: 44 LWVLLLY-ELTLECYTLEKEKEEEEDEG----KEEEEEKEDEGKKEEEEEADEGKNTEKE 98
W LL E ++ + E+ + + E+++ E + + +
Sbjct: 68 FWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 99 ELKPSNV-------VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL 151
NV L L ++ + ++ G +GKT + A+ + V
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK-----VQ 177
Query: 152 GGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
I+ ++ ET+ L ++K + +
Sbjct: 178 CKMDFKIF---------WLN-----LKNCNSPETV--------------LEMLQKLLYQI 209
Query: 212 KLPNLERP-----VKYLSGGQKRRLSFTIAI-LHKPQLIILDEPCVGVDPLVRKRMWD-- 263
R +K + L + ++ L++L V +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--V----------QNAK 257
Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYK 323
F + ++ TT++ + + ++ I + K
Sbjct: 258 AWNAFNLSCKILL-TTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVK----SLLLK 309
Query: 324 ITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNY 383
+ + P +P ++ ++
Sbjct: 310 YLD-----------CRPQDLPRE--------------------VLTTNP---RRLSIIAE 335
Query: 384 ELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKY-----FPDEESA 438
+R +N + VN D K +S L+ L+ + + FP
Sbjct: 336 SIRDGLATW-DNWKH--VNCD---KLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 439 EEALKNESLSLL 450
L LSL+
Sbjct: 388 PTIL----LSLI 395
Score = 38.3 bits (88), Expect = 0.005
Identities = 46/316 (14%), Positives = 87/316 (27%), Gaps = 107/316 (33%)
Query: 196 DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255
D + + H++ + RL F +L K + ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVS--------GTLRL-FWT-LLSKQEEMV---------- 79
Query: 256 LVRKRMWDLLQVFVGKGRTV---IMTTQYIEEANDASEVAFLY-KGRIIAQDSPDGFKSK 311
Q FV + + + + E S + +Y + R + F +K
Sbjct: 80 ----------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AK 128
Query: 312 YSMP------KLSDVFYKITNDDG-TSSGPP--------AETSKAEEPEVKLEYIHTPFI 356
Y++ KL ++ G + + + + K
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--------- 179
Query: 357 RKIFPVAIFNATMG---SPPAGLKM-----------------GVVNYELRGEFERSG--- 393
IF + SP L+M N +LR ++
Sbjct: 180 ---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 394 --NNSPYCPVNHDCLI-----KSPKARK----SC-TLLSCLDK------DTIKLKYFPDE 435
+ PY +CL+ ++ KA SC LL+ K + +
Sbjct: 237 LLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 436 ESAEEALKNESLSLLL 451
+ +E SLLL
Sbjct: 293 HHSMTLTPDEVKSLLL 308
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 71.6 bits (175), Expect = 2e-13
Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 28/239 (11%)
Query: 16 CPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEE 75
P ++ + + L + + +T+ + + + +E + +
Sbjct: 360 APRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDN 419
Query: 76 EKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK 135
+EE+E ++ N E + ++LN L +KR + + G + GK+TL++
Sbjct: 420 IPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR 479
Query: 136 AIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-AMFGELTIKETLNFFGMIYG 194
AI + + G P + Y+ ++ + ++ + +
Sbjct: 480 AIANGQ---------VDGFPTQ-----EECRTVYVEHDIDGTHSDTSVLDFVF------- 518
Query: 195 MDESIWLFQMRKYSHVLKL----PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
ES + +++ + P+ LSGG K +L+ A+L +++LDEP
Sbjct: 519 --ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575
Score = 51.6 bits (123), Expect = 5e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
++ LSGGQK +L +P LI+LDEP
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP 928
Score = 50.0 bits (119), Expect = 1e-06
Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 16/210 (7%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
E+ D + E EG K +++ + N E + S + + +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSS 700
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
++G + AGK+TL+ + G + GE++ H+ ++ Y+ Q
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---------HENC--RIAYIKQHAFAHI 749
Query: 179 ELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTI 235
E + +T + + G D R+ + + + G +R
Sbjct: 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN--ENDAEAMNKIFKIEGTPRRIAGIHS 807
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
K +G + ++ W +
Sbjct: 808 RRKFKNTYEYECSFLLGENIGMKSERWVPM 837
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 68.4 bits (168), Expect = 4e-13
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
S VL ++ ++ E V++G S +GK+T L+ + L++ +GEI + G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII-DGINLKAKDTN 94
Query: 163 AG---SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM-RKYSHVLKLPNLER 218
+VG + Q +F +T+ + + + + R+ + + L++
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNI--------TLAPMKVRKWPREKAEAKAMELLDK 146
Query: 219 PV-------KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKRMWDLLQV 267
V Y LSGGQ +R++ A+ +P++++ DEP +DP +V ++L V
Sbjct: 147 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG----EVLSV 201
Query: 268 FVG---KGRTVIMTTQYIEEANDASEVA----FLYKGRIIAQDSPDGF 308
+G T+++ T E A EV F+ G II + P+
Sbjct: 202 MKQLANEGMTMVVVTH---EMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 68.7 bits (169), Expect = 1e-12
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG 164
VL+ + VK +LG + +GK+TL+ I L + +G + V K
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV-DELDVRTVKLKDLR 416
Query: 165 SKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWL---------FQMRKYSHVLKLP 214
+ +PQE +F G TIKE L + G D+ I F ++ LP
Sbjct: 417 GHISAVPQETVLFSG--TIKENLKW-GREDATDDEIVEAAKIAQIHDF-------IISLP 466
Query: 215 N-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLL 265
+ V + SGGQK+RLS A++ KP+++ILD+ VDP + +
Sbjct: 467 EGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526
Query: 266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
KG T + TQ I A A ++ L++G++
Sbjct: 527 -----KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 68.8 bits (169), Expect = 1e-12
Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 48/223 (21%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L + +L +++ E +G S GK+TL+ I +++ G+I + GH I GS
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI-DGHN--IKDFLTGS 412
Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMI-YGM----DESIWLFQMRKYSH--VLKLPN 215
++G + Q+ +F + T+KE N I G DE + +H ++ LP
Sbjct: 413 LRNQIGLVQQDNILFSD-TVKE--N----ILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465
Query: 216 ------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLL 265
ER VK LSGGQK+RLS L+ P ++ILDE +D ++++ + L
Sbjct: 466 GYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 266 QVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
K RT ++ T A ++ + G I+
Sbjct: 525 -----KDRTTLIVAHRLSTIT------HADKIVVIENGHIVET 556
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 67.7 bits (166), Expect = 1e-12
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 42/192 (21%)
Query: 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
KN K K V L+N ++ ++ E F +LG S AGKTT ++ I GL S GE++
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY-FD 65
Query: 153 GHPASIYHKTAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLF 202
+ + +P Q A++ LT E N + + +
Sbjct: 66 DRLVA------SNGKLIVPPEDRKIGMVFQTWALYPNLTAFE--N---IAFPL------- 107
Query: 203 QMRKYS------------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
K S +L + + L + LSG Q++R++ A++ P L++LDEP
Sbjct: 108 TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 250 CVGVDPLVRKRM 261
+D +R
Sbjct: 168 FSNLDARMRDSA 179
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 68.0 bits (167), Expect = 2e-12
Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 64/260 (24%)
Query: 84 EEEEEADEGK---NTEKEELKPSNV----------VLNNCSLVVKRREFFVLLGASSAGK 130
+ E E D GK E+ +V L++ S + + + L+G S +GK
Sbjct: 323 DLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
+T+ ++ G I L GH + + + Q + +F + TI N
Sbjct: 383 STIANLFTRFYDVDSGSI-CLDGHD--VRDYKLTNLRRHFALVSQNVHLFND-TIAN--N 436
Query: 188 FFGMI-YGM-----DESIWLFQMRKYSH----VLKLPN------LERPVKYLSGGQKRRL 231
I Y E I Q + +H + +P E LSGGQ++R+
Sbjct: 437 ----IAYAAEGEYTREQIE--QAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRV 489
Query: 232 SFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIM-----TTQYI 282
+ A+L ++ILDE +D ++ + +L K +TV++ +T I
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-----KNKTVLVIAHRLST--I 542
Query: 283 EEANDASEVAFLYKGRIIAQ 302
E A E+ + +G II +
Sbjct: 543 E---QADEILVVDEGEIIER 559
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 68.1 bits (167), Expect = 3e-12
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYH 160
+L +L VK + L+G S GK+T ++ + L + G + + G +I
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS-IDGQDIRTINV 459
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKL 213
+ +G + QE +F TI E N + YG ++ + ++ K Y ++KL
Sbjct: 460 RYLREIIGVVSQEPVLFAT-TIAE--N---IRYGREDVT-MDEIEKAVKEANAYDFIMKL 512
Query: 214 PNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
P+ ER + LSGGQK+R++ A++ P++++LDE +D + L
Sbjct: 513 PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570
Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
+GRT I+ + +A +A G I+ Q
Sbjct: 571 KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
Score = 62.7 bits (153), Expect = 1e-10
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 36/220 (16%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
PS VL SL VK+ + L+G+S GK+T+++ + + G + L G +
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKEIKQLNV 1102
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES---------------IWLFQMR 205
+ +++G + QE +F + +I E N + YG + I F
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAE--N---IAYGDNSRVVSYEEIVRAAKEANIHQF--- 1153
Query: 206 KYSHVLKLPN-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
+ LP+ V LSGGQK+R++ A++ +P +++LDE +D K
Sbjct: 1154 ----IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209
Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
+ + L +GRT I+ + +A + + G++
Sbjct: 1210 VQEALDK-AREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 67.6 bits (166), Expect = 3e-12
Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 60/258 (23%)
Query: 84 EEEEEADEGKNT---EKEELKPSNV----------VLNNCSLVVKRREFFVLLGASSAGK 130
+ E+E DEGK +L+ NV L N +L + + L+G S +GK
Sbjct: 323 DSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGK 382
Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
+T+ I +I +G I ++ GH + T S +V + Q + +F + T+ N
Sbjct: 383 STIASLITRFYDIDEGHI-LMDGHD--LREYTLASLRNQVALVSQNVHLFND-TVAN--N 436
Query: 188 FFGMI-YGMDESIWLFQMRK-----YSH--VLKLPN------LERPVKYLSGGQKRRLSF 233
I Y E Q+ + Y+ + K+ N E V LSGGQ++R++
Sbjct: 437 ----IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAI 491
Query: 234 TIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIM-----TTQYIEE 284
A+L ++ILDE +D ++ + +L K RT ++ +T IE+
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQ-----KNRTSLVIAHRLST--IEQ 544
Query: 285 ANDASEVAFLYKGRIIAQ 302
A+ E+ + G I+ +
Sbjct: 545 AD---EIVVVEDGIIVER 559
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 65.3 bits (160), Expect = 7e-12
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 18/212 (8%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
L + S V + L+G S AGK+T+L+ + +IS G I + G I
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI-DGQD--ISQV 121
Query: 162 TAGS---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL 216
T S +G +PQ+ +F + TI + + + G + ++ + H ++ P
Sbjct: 122 TQASLRSHIGVVPQDTVLFND-TIADNIRY-GRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ER +K LSGG+K+R++ IL P +I+LDE +D + + L V
Sbjct: 180 YRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VC 237
Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
RT I+ + +A ++ + G I+ +
Sbjct: 238 ANRTTIVVAHRLSTVVNADQILVIKDGCIVER 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 64.5 bits (158), Expect = 7e-12
Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 38/227 (16%)
Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKT 162
L+ S+ V + + +++G + +GK+TL+ I G +G ++ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP---AEL 79
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMI-------YGMDESIWLFQMR-------KYS 208
+ Q E+T+ E L +I ++ + + K
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL----LIGEICPGESPLNSLFYKKWIPKEEEMVEKAF 135
Query: 209 HVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
+L+ L R LSGGQ + + A++ P++I++DEP GV P + +++
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 265 LQVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
+ KG T ++ IE N + ++ G+IIA+ +
Sbjct: 196 VLELKAKGITFLI----IEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 64.0 bits (157), Expect = 8e-12
Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 54/229 (23%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
V+L+N +L +K+ E ++G S +GK+TL K I G++ ++ GH +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHD--LALADPN 79
Query: 165 S---KVGYMPQELAMFGELTIKETLNFFGMI-YG-----MDESIWLFQMRKYSH----VL 211
+VG + Q+ + +I + N I +++ I K + +
Sbjct: 80 WLRRQVGVVLQDNVLLNR-SIID--N----ISLANPGMSVEKVI---YAAKLAGAHDFIS 129
Query: 212 KLPN------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRM 261
+L E+ LSGGQ++R++ A+++ P+++I DE +D ++ + M
Sbjct: 130 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 262 WDLLQVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQDS 304
+ KGRTVI+ T + +A + + KG+I+ Q
Sbjct: 189 HKIC-----KGRTVIIIAHRLSTVK------NADRIIVMEKGKIVEQGK 226
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 63.0 bits (154), Expect = 2e-11
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 35/221 (15%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+ ++ L + + + L+G + +GK+T+ K + + +G+I +GG ++
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI-KIGGK--NVNK 85
Query: 161 KTAGS---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH----VLKL 213
S +G +PQ+ +F E TIK + + G + DE + + K + + L
Sbjct: 86 YNRNSIRSIIGIVPQDTILFNE-TIKYNILY-GKLDATDEEVI--KATKSAQLYDFIEAL 141
Query: 214 PNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
P + +K LSGG+++R++ +L P+++I DE +D ++
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 268 FVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
+ K RT+I+ T A + L KG+I+ +
Sbjct: 201 -LRKNRTLIIIAHRLSTIS------SAESIILLNKGKIVEK 234
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 61.4 bits (150), Expect = 8e-11
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 49/229 (21%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPAS 157
P+ VL + + + L+G + +GK+T + L + G++ +L G P
Sbjct: 30 PNVQVLQGLTFTLYPGKVTALVGPNGSGKST----VAALLQNLYQPTGGKV-LLDGEPLV 84
Query: 158 IY-HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSH 209
Y H ++V + QE +FG + +E N + YG+ + + ++ +
Sbjct: 85 QYDHHYLHTQVAAVGQEPLLFGR-SFRE--N---IAYGLTRTPTMEEITAVAMESGAHDF 138
Query: 210 VLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRK 259
+ P E + LSGGQ++ ++ A++ KP+L+ILD +D V++
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 260 RMWDLLQVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
L + RTV++ + A + FL +G + Q
Sbjct: 198 L---LYESPEWASRTVLLITQQLSLAE------RAHHILFLKEGSVCEQ 237
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 62.2 bits (152), Expect = 8e-11
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 47/171 (27%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ LNN +L +K EF LLG S +GK+TLL I G+ + G+I+
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF----------- 62
Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
V +P Q A++ +T+ + N + + + ++RK
Sbjct: 63 -DEKDVTELPPKDRNVGLVFQNWALYPHMTVYK--N---IAFPL-------ELRKAPREE 109
Query: 209 ---------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+L + L R LSGGQ++R++ A++ +P++++LDEP
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 61.1 bits (149), Expect = 2e-10
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 47/171 (27%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ +N +L +K EF VLLG S GKTT L+ I GL+ ++G I+
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF----------- 70
Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
V Y+P Q A++ +T+ E N + + + +++K+
Sbjct: 71 -GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--N---IAFPL-------KIKKFPKDE 117
Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+L++ L R LSGGQ++R++ AI+ +P ++++DEP
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 59.6 bits (145), Expect = 7e-10
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 41/171 (23%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
+ SL VK EF +LLG S GKTT L+ I GL+ S+G+I++ G
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLV----- 67
Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
K ++P Q A++ +T+ + N + + + ++RK
Sbjct: 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYD--N---IAFPL-------KLRKVPRQE 115
Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
+L L L R + LSGGQ++R++ AI+ KPQ+ ++DEP
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 58.4 bits (142), Expect = 2e-09
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 47/171 (27%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
++ S VK EF LLG S GKTT L + G+ + GEI+
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF----------- 62
Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
V +P Q A++ +T+ E N + + + + R+ S
Sbjct: 63 -DDVLVNDIPPKYREVGMVFQNYALYPHMTVFE--N---IAFPL-------RARRISKDE 109
Query: 209 ---------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
L + N L+R LSGGQ++R++ A++ +P++++ DEP
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 54.7 bits (132), Expect = 3e-09
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL--PNLERPVKYLSGGQKRR------ 230
+ F S + + + L + ERP+ +LSGG++
Sbjct: 12 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
L+ ++ + + L+ILDEP +D R+++ +++ ++ K VI
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 57.6 bits (140), Expect = 4e-09
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 26/164 (15%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYH 160
P + + SL + L+G S +GK+T+L ++ L + + G I L GH +
Sbjct: 355 PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI-SLDGHDIRQLNP 413
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMI-YGMDESIW--LFQMRK-------YSHV 210
SK+G + QE +F +I E N I YG D+ ++++ + +
Sbjct: 414 VWLRSKIGTVSQEPILFSC-SIAE--N----IAYGADDPSSVTAEEIQRVAEVANAVAFI 466
Query: 211 LKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248
P E+ V LSGGQK+R++ A+L P++++LDE
Sbjct: 467 RNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDE 509
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 55.6 bits (135), Expect = 5e-09
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L SL VK+ EF ++GAS +GK+TLL + L ++G++++ G
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL------------EGK 66
Query: 166 KVGYM-PQELAMF---------------GELTIKETLNFFGMIYGMDESIWLFQMRKY-S 208
+V Y +EL++ ELT E + + G + + ++
Sbjct: 67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK----EAKERGE 122
Query: 209 HVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
++L L + LSGG+++R++ A+ ++P L+ DEP +D KR+ D+
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
G +++M T E A + G+++ +
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 55.4 bits (134), Expect = 1e-08
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
LNN SL V + + ++GAS AGK+TL++ + L+ ++G + V G ++
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
A ++G + Q + T+ + + + R+ + +L L L +
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD---EVKRRVTELLSLVGLGDKHD 158
Query: 221 KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
Y LSGGQK+R++ A+ P++++ D+ +DP + + +LL+ + G T++
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 277 MTT---QYIEEANDASEVAFLYKGRIIAQDS 304
+ T ++ VA + G +I QD+
Sbjct: 219 LITHEMDVVKRI--CDCVAVISNGELIEQDT 247
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 54.7 bits (131), Expect = 2e-08
Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 23/258 (8%)
Query: 35 HGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEK-EDEGKKEEEEEADEGK 93
G I L +E Y + + + G+ ++ K E + +
Sbjct: 64 VGARDTYIDLI----FEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAI 119
Query: 94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG 153
+ E+L P N+ LN + + + + K + + N+ + E
Sbjct: 120 SAFMEKLIPYNIFLNAIYIRQGQIDAIL------ESDEAREKVVREVLNLDKFETAYKKL 173
Query: 154 HPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR------KY 207
+ + + A+ E + + I+ ++ K
Sbjct: 174 SELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 233
Query: 208 SHVLKLPNLERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
+ ERP+ +LSGG++ RL+ ++ + + L+ILDEP +D R+++
Sbjct: 234 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 293
Query: 262 WDLLQVFVGKGRTVIMTT 279
+++ ++ K VI+ +
Sbjct: 294 ITIMERYLKKIPQVILVS 311
Score = 28.5 bits (63), Expect = 5.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 119 FFVLLGASSAGKTTLLKAI 137
+++G + +GK++LL AI
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 54.5 bits (132), Expect = 4e-08
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 84 EEEEEADEGKNTEKEELK-------------PSNVVLNNCSLVVKRREFFVLLGASSAGK 130
+ EEE D+ E E++ VL + + +K + L+G + +GK
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGK 394
Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
TT++ ++ ++ +G+I V G I S +G + Q+ +F T+KE L
Sbjct: 395 TTIVNLLMRFYDVDRGQILV-DGID--IRKIKRSSLRSSIGIVLQDTILFST-TVKENL- 449
Query: 188 FFGMIYG-----MDESIWLFQMRKYSHV----LKLPNLERPVKY----------LSGGQK 228
YG +E + K +H LP Y LS GQ+
Sbjct: 450 ----KYGNPGATDEEIK---EAAKLTHSDHFIKHLPE-----GYETVLTDNGEDLSQGQR 497
Query: 229 RRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRT--VI 276
+ L+ T A L P+++ILDE VD ++ MW L+ +G+T +I
Sbjct: 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-----EGKTSIII 546
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 51.4 bits (124), Expect = 1e-07
Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
L N +L +K EF ++G S +GK+T+L I L ++GE++ + +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-IDNIKTNDLDDDELT 78
Query: 164 ---GSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS-HVLKLPNL-E 217
K+G++ Q+ + LT E N +I+ ++ + RK + LK+ L E
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALE--NVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 218 RPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--- 270
R + LSGGQ++R++ A+ + P +I+ D+P +D K ++Q+
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD---SKTGEKIMQLLKKLNE 193
Query: 271 -KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311
G+TV++ T I A + +L G + ++ GF +
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDDR 235
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 50.6 bits (122), Expect = 5e-07
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 47/171 (27%)
Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
VV + +L + EF V +G S GK+TLL+ I GL+ I+ G++++
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI----------- 62
Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
++ P Q A++ L++ E N M +G+ ++
Sbjct: 63 -GEKRMNDTPPAERGVGMVFQSYALYPHLSVAE--N---MSFGL-------KLAGAKKEV 109
Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
VL+L L+R K LSGGQ++R++ ++ +P + +LDEP
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.0 bits (103), Expect = 3e-05
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 41 TIRLWVLLLYELTLECYTLEKEKE-EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+IR W E E+ K +E D + E++ E K++ EE ++ ++ + E+
Sbjct: 86 SIRKWR--------E----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 100 LKPSN 104
K +N
Sbjct: 134 NKINN 138
Score = 38.6 bits (89), Expect = 0.002
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E E + E + + ++ D K E+E E + EE
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 36.3 bits (83), Expect = 0.010
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 66 EEDEGKEEEE--EKEDEGKKEEEEEADEGKNTEKEELK 101
+ D +E E K E +++ +E D ++E +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR 113
Score = 32.4 bits (73), Expect = 0.20
Identities = 3/42 (7%), Positives = 16/42 (38%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
++ +++ +E + + E+ ++ K ++
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 0.96
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 58 TLEKEKEEEED--EGKEEEEEKEDEGKKEEEEE 88
EK K++ E+ + + E+ EK + ++
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 29/144 (20%)
Query: 317 LSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSP-PAG 375
L + F KI + P + +EP E + F+ + +++ P G
Sbjct: 33 LQEQFNKILPE------PTEGFAADDEPTTPAELV-GKFLG-------YVSSLVEPSKVG 78
Query: 376 LKMGVVNYELRGEFER---SGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYF 432
V+N L EFE GN+ + H L TL+ K+ IK Y
Sbjct: 79 QFDQVLNLCLT-EFENCYLEGND-----I-H-ALAAKLLQENDTTLVK--TKELIK-NYI 127
Query: 433 PDEESAEEALKNESLSLLLEGSPD 456
A+ +S S L +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE 151
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 40.1 bits (94), Expect = 7e-04
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
L E+ E E + + EE EA + EE+K
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEA 221
Score = 38.2 bits (89), Expect = 0.003
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E EE E E + +E K E E+ + + + +
Sbjct: 196 AGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 37.8 bits (88), Expect = 0.003
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+ + E E+ E E + +E K E+ ++
Sbjct: 185 VQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTD 229
Score = 35.9 bits (83), Expect = 0.016
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + + E +E E + + E E E
Sbjct: 184 EVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASE 223
Score = 35.9 bits (83), Expect = 0.018
Identities = 4/44 (9%), Positives = 13/44 (29%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ + + E E+ + E +A + + +
Sbjct: 183 AEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNA 226
Score = 35.5 bits (82), Expect = 0.023
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ EE E + E K E E + G ++E
Sbjct: 195 AAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 39.1 bits (92), Expect = 0.002
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ K E +E EEEE ++E + ++E A E + EK+
Sbjct: 213 VWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKP 253
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ EE +E + +EEKED + EE +E K + ++++
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 28.3 bits (64), Expect = 4.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E+E +EE E ++E E+E ++++ + K EL
Sbjct: 227 EEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 36.4 bits (83), Expect = 0.006
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E+ +E+EDE ++E+++ +D+ +EEEEE + +E K +
Sbjct: 44 EENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNT 87
Score = 34.9 bits (79), Expect = 0.016
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E++ E E++ +E +E EDE + E++++ D+ E+EE+
Sbjct: 33 EEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Score = 34.5 bits (78), Expect = 0.027
Identities = 14/42 (33%), Positives = 30/42 (71%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+++EE DE ++E+E+++D+ +E+EE +E + E+L+
Sbjct: 40 EEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 33.3 bits (75), Expect = 0.069
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCS 111
EK E EE E + +E+++++ ++++++ DE + E+E + +
Sbjct: 34 EKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFK 85
Score = 32.9 bits (74), Expect = 0.076
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+EK E +E +EE +++++ ++E+++ D+ ++ E+EE
Sbjct: 32 HEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
Score = 32.9 bits (74), Expect = 0.093
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
+++++E+ED+ +++E++E+E + ++ E EE K C+ VK ++
Sbjct: 50 DEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQ 108
Score = 31.8 bits (71), Expect = 0.22
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV 106
+ E+ EE+ EE+EE+ + ++E+E+ D+ + +++E + V
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVT 74
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 36.8 bits (84), Expect = 0.011
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
++ +T + E E++ +E +E++++E + E D+G++ E+++
Sbjct: 357 VDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGR 407
Score = 36.1 bits (82), Expect = 0.020
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
LE E E+E +EDE +EE+++ E E E + E+
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 34.9 bits (79), Expect = 0.055
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEK 97
T E E++EEE + E+EEE +D G ++++ E+ E ++
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
Score = 34.1 bits (77), Expect = 0.095
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
E+++EE +++ EEE++ + E ++ + E P
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAP 412
Score = 33.8 bits (76), Expect = 0.11
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+E EEE DE ++EEE+ + + ++ E A+E + +
Sbjct: 369 FEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQA 411
Score = 30.7 bits (68), Expect = 1.0
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
E +++E+E+E ++ ++D+G+ EE++ G+ + E K S
Sbjct: 375 EADEDEDEEED-DDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 35.8 bits (82), Expect = 0.017
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 54 LECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
++ Y + E+E+ + + E E D + E+ K V
Sbjct: 213 VKYYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
Score = 31.2 bits (70), Expect = 0.51
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
LE E+ E + E+ + + + +DE +++K ++
Sbjct: 217 AEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 36.3 bits (84), Expect = 0.024
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 42 IRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ + L+ +EKE E+E K+EE++ E++ +++++ E + E+E+
Sbjct: 201 VAYPIQLVVT-----KEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKP 255
Query: 102 PSNVV 106
+ V
Sbjct: 256 KTKKV 260
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 35.2 bits (81), Expect = 0.025
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L K E KE EEE+ EG +E+ E EG+ + +
Sbjct: 197 LFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTD 237
Score = 32.2 bits (73), Expect = 0.31
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ ++ + + E+ E +EEE + E K E +E + +NT+ +
Sbjct: 192 EVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
++E E D + E K+ EEEE EG + E+K
Sbjct: 188 DEEWEVMVDLFYHKTLP-TAEQKEAEEEEGAEGAEEKVAEVKEGEA 232
Score = 29.1 bits (65), Expect = 2.7
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 47 LLLYELTLECYTLEKE-KEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ + + E L E ++EE E + + E++E +E EE
Sbjct: 169 MIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEE 222
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 35.3 bits (80), Expect = 0.040
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
+ EE+ E E E + K ++E EA + +E KP+
Sbjct: 93 AAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136
Score = 33.8 bits (76), Expect = 0.15
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCS 111
E + KE E + E + +E + A E TEKE
Sbjct: 107 TPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTL 158
Score = 29.5 bits (65), Expect = 2.8
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREF 119
+ E ++E E + E + +E + + E+ +V N + +
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIK 164
Query: 120 F 120
F
Sbjct: 165 F 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 35.2 bits (81), Expect = 0.042
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 205 RKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI-------LHKPQLIILDEPCVGVDPLV 257
+ + + PN + LSGG++ ++ ++ + ++ + IILDEP V +D
Sbjct: 263 KDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322
Query: 258 RKRMWDLLQVFVGKGRTVIMT 278
R ++ ++ + + +I+T
Sbjct: 323 RAKLAEIFRKVKSIPQMIIIT 343
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 34.3 bits (79), Expect = 0.043
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ EEE EE E+ + E+ E K ++
Sbjct: 28 APQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIA 69
Score = 32.4 bits (74), Expect = 0.19
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ EEE G EE +E + E+ + +
Sbjct: 27 AAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKA 66
Score = 31.6 bits (72), Expect = 0.34
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E+ EEE EEE + EE A+ + E
Sbjct: 20 EQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAE 59
Score = 31.6 bits (72), Expect = 0.36
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ EEE + EEE ++ EEA E
Sbjct: 19 REQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTA 58
Score = 31.2 bits (71), Expect = 0.44
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+ +EE + +EE E EE K EEL
Sbjct: 21 QPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAA 63
Score = 28.2 bits (63), Expect = 5.5
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE--ELK 101
EE + E ++ +E + E + E++
Sbjct: 36 GGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEME 79
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 34.7 bits (79), Expect = 0.054
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 80 EGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV- 138
E + + D ++ + +K S + NN E ++ + A+
Sbjct: 89 EMIENQGLFKDHVEDVNFQPVKYSALTSNN-------EECTAVVARGGTANAIRIAAVDN 141
Query: 139 --GLKNISQGEIWVLGGHPASIYHKT 162
+ ++Q I + P +H +
Sbjct: 142 PVNVNKLAQDSINIAQIVPMDGFHLS 167
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 33.9 bits (77), Expect = 0.054
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 124 GASSAGKTTLLKAIV-----------GLKNISQGEIWVLGGHPASIYHKTAGSKVGYM-P 171
G S +GKTTL+ ++ +K + G+ + S +G+ V P
Sbjct: 9 GTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASP 68
Query: 172 QELAMFGELTIKETLNFFGMI--YGMDESIWLFQMRKYSHVLKL 213
+LA ++ +E + + Y D + + + + ++
Sbjct: 69 VKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRI 112
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 33.9 bits (78), Expect = 0.062
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
KE++ E + EE + E + E EA + ++E
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDE 42
Score = 30.0 bits (68), Expect = 1.1
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
+E++ + EE + +E E E + +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDE 42
Score = 27.3 bits (61), Expect = 7.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 72 EEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
+E+K EG+ EE D+ + E E + S
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASA 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 34.0 bits (79), Expect = 0.067
Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 51/173 (29%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L +LVV + E L+G + AGK+TL K +L G P Y G
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGK--------------ILAGDPE--YTVERGE 61
Query: 166 KVGYMPQELAMFGELTIKE--------------------TLNFFGMIYG------MDESI 199
+ + + EL+ E NF + + +
Sbjct: 62 -ILLDGENIL---ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE 117
Query: 200 WLFQMRKYSHVLKLPN--LERPVKY-LSGGQKRRLS-FTIAILHKPQLIILDE 248
+ +++K +L L R + SGG+K+R + +L +P +LDE
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL-EPTYAVLDE 169
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.2 bits (77), Expect = 0.10
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L ++ E + + +E+E +E+E+ EG E +K
Sbjct: 531 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 573
Score = 30.3 bits (67), Expect = 1.4
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
L KE+E +E+E+ EG ++E + +++
Sbjct: 542 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 33.2 bits (76), Expect = 0.12
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVG---------LKNISQGE-------IWVLGGHP 155
+ ++ G ++GKT+LL + + +S + + GH
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 66
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.8 bits (75), Expect = 0.12
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVG---------LKNISQGE-------IWVLGGHP 155
+ ++ G ++GKT+LL + + +S + + GH
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 102
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.5 bits (77), Expect = 0.17
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLN 108
+L + KE + ++ E E +K + + + +E+E +N VL+
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV-ERLRMSEEEAKNATNRVLS 988
Score = 32.4 bits (74), Expect = 0.41
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
LE + + + + E+ +E + +K E +TE E+L+
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT--YSTETEKLR 966
Score = 31.6 bits (72), Expect = 0.65
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK-----NTEKEELK 101
L E L KE + + E K EE + + E+ ++ + TEKEEL
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
Score = 30.5 bits (69), Expect = 1.5
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L+K K E + ++ E K + + + +N E + L
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Score = 29.7 bits (67), Expect = 2.6
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L + LE E ++ + + E EEE + + +E
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLR---MSEEEAKNATNRVLSLQE 991
Score = 28.9 bits (65), Expect = 4.3
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 48 LLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L+ EL + L+ EKEE ++ +E + +K+ EE + + + +
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ-LELDLNDER 1076
Score = 28.2 bits (63), Expect = 8.5
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
L E +E+ K E+EE + +E + + EE K + LN+
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.0 bits (74), Expect = 0.21
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRR 117
++ E E + + E ++ K L+ + S +++
Sbjct: 9 RFIQDLERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQG 68
Query: 118 EFFVLL-GASSAGKTTLLKAIVG 139
F +L+ G GK+T L A++G
Sbjct: 69 VFRLLVLGDMKRGKSTFLNALIG 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 32.7 bits (75), Expect = 0.21
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE 147
+ + ++ G + +GKTT +K+I+ I + E
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYIKSIMEF--IPKEE 199
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 32.7 bits (75), Expect = 0.24
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE 147
V+ V+ G + +GKTTL+KA++ I +
Sbjct: 170 RAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQ 203
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 32.8 bits (75), Expect = 0.26
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK------NTEKEELKPSNVVLNNC 110
LE E + +E EE E + E+ T EE K + +
Sbjct: 6 DLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDL 65
Query: 111 SLVVKRREFFV 121
+ + EF +
Sbjct: 66 NNCKENYEFLI 76
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 32.0 bits (73), Expect = 0.27
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 62 EKEEEEDEGKEEEEEKEDEGKKEEEE 87
EK EE + E E +GK+EEEE
Sbjct: 181 EKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 31.6 bits (72), Expect = 0.39
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
++ E+ +E E E E K +EEEE
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEE 205
Score = 31.2 bits (71), Expect = 0.55
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEE 85
+EK EE E E E K+ + ++EE
Sbjct: 179 DVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 30.8 bits (70), Expect = 0.62
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 63 KEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++ E+ + E E E K+ +EE +E
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 30.0 bits (68), Expect = 1.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
++ E+ E E + + KEEEEE
Sbjct: 179 DVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 31.8 bits (72), Expect = 0.32
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
L ++ EE E + EE +E +EE +E + E E
Sbjct: 201 LYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATE 241
Score = 30.7 bits (69), Expect = 0.78
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E++ EE + EEE ++E +E+ E + +
Sbjct: 211 EQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNV 250
Score = 30.3 bits (68), Expect = 1.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EE ++ EE E+ G++E +EE E + E
Sbjct: 203 FYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 60 EKEKEEEEDEGKEE---EEEKEDEGKKEEEEEADEGKNTEKEE 99
++ EE E + EE EE E+E K+E EE E +E
Sbjct: 204 YRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEEN 246
Score = 29.1 bits (65), Expect = 2.6
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 46 VLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
VL L ++ + EE E++ + EE +E E E +
Sbjct: 181 VLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQA 237
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 32.1 bits (72), Expect = 0.36
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+ + ED+ ++ +E + +++E+A +
Sbjct: 311 QDDDTASEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 31.4 bits (70), Expect = 0.69
Identities = 4/33 (12%), Positives = 17/33 (51%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
+ + ++ E + ++ +E +++++ D G
Sbjct: 309 DDQDDDTASEDDADADDAAEEADDDDDDDEDAG 341
Score = 30.6 bits (68), Expect = 0.98
Identities = 2/32 (6%), Positives = 18/32 (56%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+ ++++ +++ + + + +++++ DE
Sbjct: 307 PTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
Score = 30.6 bits (68), Expect = 1.0
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTE 96
+E +D+ + E + + EE D+ + E
Sbjct: 302 VATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 32.2 bits (72), Expect = 0.36
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 54 LECYT---LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
++ Y +E E + E+ E + N E
Sbjct: 286 VDYYLGIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSN 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.4 bits (72), Expect = 0.38
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIV 138
+L + R+ VL+GAS G++ + A++
Sbjct: 13 NLYFQGRKTLVLIGASGVGRSHIKNALL 40
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich,
autocatalytic cleavage, cell membrane, developmental
protein, disease mutation; 1.44A {Homo sapiens} PDB:
3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A
3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A
2wfr_A 2wg3_A*
Length = 187
Score = 31.3 bits (70), Expect = 0.40
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-----TVIMTTQYIEEANDASEVAFLY 295
P +I DE G D L+ +R D L + T+ +E SE + Y
Sbjct: 72 PDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTKGWDEDGHHSEESLHY 131
Query: 296 KGRIIAQDSPDGFKSKYSM 314
+GR + + D ++KY +
Sbjct: 132 EGRAVDITTSDRDRNKYGL 150
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 31.6 bits (71), Expect = 0.46
Identities = 1/33 (3%), Positives = 7/33 (21%), Gaps = 1/33 (3%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++ E + + ++
Sbjct: 117 TLTAVHDKILE-DLVFPTEIVGKRVRYLVGGNK 148
Score = 30.1 bits (67), Expect = 1.4
Identities = 2/42 (4%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 62 EKEEEEDEGKEEEE-EKEDEGKKEEEEEADEGKNTEKEELKP 102
+ + + + K E+ ++
Sbjct: 103 SRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLV 144
Score = 29.7 bits (66), Expect = 1.9
Identities = 1/36 (2%), Positives = 3/36 (8%)
Query: 66 EEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ E +
Sbjct: 112 RPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGN 147
Score = 28.5 bits (63), Expect = 4.4
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
+ ++ E GK+
Sbjct: 116 RTLTAVHDKILEDLVFPTEIVGKRVRYLVGGN 147
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.2 bits (71), Expect = 0.52
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 115 KRREFFVLLGASSAGKTTLLK 135
+ + +G +GKT L
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFV 25
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 30.7 bits (70), Expect = 0.54
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
EE E E++ + + + EE + E + LK
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLK 39
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKN 94
+ E++ E +E + +E K EEE K+
Sbjct: 6 HENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
Score = 28.8 bits (65), Expect = 2.9
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+E+ E K+ E ++ EE +A E + ++
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 0.63
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 51 ELTLECYTLEKEKEEEEDE-GKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
++ + LE++ EEEE K + E+ +GK ++ E+ + +L
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Score = 29.0 bits (65), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 52 LTLECYTLEKEKEEEEDEGKEEEEE---KEDEGKKEEEEEADEGKNTEKEELK 101
L + LE+ E E +EEEE + E KK +++ D + E+EE
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 31.0 bits (71), Expect = 0.68
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLN 108
+E D K+ + + K EE + K E+ ++N
Sbjct: 233 VYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKKWTLMN 281
Score = 29.5 bits (67), Expect = 2.0
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK 93
E EE ++ + + EE D+
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPN 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 31.0 bits (71), Expect = 0.71
Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 55/177 (31%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L SL V E ++G + +GK+TL L G Y T G+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSA--------------TLAGRED--YEVTGGT 78
Query: 166 KVGYMPQELAMFGELTIKE--------------------TLNFFGMIYG----------M 195
V + ++L L+ ++ F +
Sbjct: 79 -VEFKGKDLL---ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 196 DESIWLFQMRKYSHVLKLPN--LERPVKY-LSGGQKRRLS-FTIAILHKPQLIILDE 248
D + M + +LK+P L R V SGG+K+R +A+L +P+L ILDE
Sbjct: 135 DRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL-EPELCILDE 190
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.4 bits (71), Expect = 0.73
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 239 HKPQLIILD-----EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
++ + + +D +VR+ ++ L+ G T +MTT+ IEE +
Sbjct: 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIAR 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 30.5 bits (70), Expect = 0.75
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIV 138
R+ VLLGA G+ + ++
Sbjct: 3 HMRKTLVLLGAHGVGRRHIKNTLI 26
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 31.2 bits (71), Expect = 0.77
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E ++ E+ EEEE++E+E + + E + E +EL
Sbjct: 337 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELA 378
Score = 30.8 bits (70), Expect = 0.99
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 58 TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
L+ +E ++E ++EEEE E + + E E ++ +EL +++
Sbjct: 339 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSKAHI 386
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion
molecules, cell cycle cell LINE, conserved sequence,
fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B
Length = 170
Score = 30.1 bits (67), Expect = 0.97
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-----TVIMTTQYIEEANDASEVAFLY 295
P +I DE G D L+ +R + + + T+ +E ++ + Y
Sbjct: 64 PDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLHY 123
Query: 296 KGRIIAQDSPDGFKSKYSM 314
+GR + + D ++KY +
Sbjct: 124 EGRALDITTSDRDRNKYGL 142
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.0 bits (67), Expect = 1.1
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 120 FVLLGASSAGKTTLLKAIV-----------GLKNISQGEIWVLGGHPASIYHKTAGSKVG 168
+ ++G +GKTTL++ V +K+ G S+ H+ AG+
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 66
Query: 169 YM--PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
+ L + + + + + + L + K K+
Sbjct: 67 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKV 113
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 1.1
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ YT + + ++ + K+ + E + + +
Sbjct: 212 DHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 27.3 bits (60), Expect = 9.4
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
LY L +E E K+ + + +
Sbjct: 218 LYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALA 257
Score = 27.3 bits (60), Expect = 9.9
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 35 HGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
+T L+ L+ + E+ KE ++ K E ++ E
Sbjct: 209 KNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRS---YTALAEA 259
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 1.2
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
+K + +E E + + + + +E+ S +
Sbjct: 24 FKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLN------------ 71
Query: 119 FFVLLGASSAGKTTLLKAIVGLKN 142
+ G + +GK++ + + G+ N
Sbjct: 72 -VAVTGETGSGKSSFINTLRGIGN 94
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150
+++ S AGK++L++A+ LK + V
Sbjct: 19 YIVSAPSGAGKSSLIQAL--LKTQPLYDTQV 47
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 30.5 bits (69), Expect = 1.3
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-------------GHPASIYHKTAGS 165
VL G GK+T KA+ L E+ + G AS H+ G
Sbjct: 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGY 265
Query: 166 KVG 168
Sbjct: 266 GPQ 268
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein
binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Length = 150
Score = 29.3 bits (65), Expect = 1.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVF------VGKGRTVIMTTQYIEEANDASEV 291
+ ++ DE G D L+ KR + L V G +++T + E+ + E
Sbjct: 41 NYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQE- 99
Query: 292 AFLYKGRIIAQDSPDGFKSKYSM 314
+ Y+GR + + D +SKY M
Sbjct: 100 SLHYEGRAVTIATSDRDQSKYGM 122
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 29.7 bits (66), Expect = 1.7
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
++++EEE + + + E
Sbjct: 215 KEQEEEEAALVAPDYGAVAEYAAPAADTWGGE 246
Score = 29.7 bits (66), Expect = 1.9
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
E +++EEE+ + + G+ +P+ +
Sbjct: 213 EAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAI 258
Score = 28.2 bits (62), Expect = 5.8
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
L ++ EE + +EEEE E
Sbjct: 205 LFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAA 237
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase,
RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A
{Homo sapiens} SCOP: h.1.27.1
Length = 71
Score = 27.8 bits (61), Expect = 1.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV---- 106
LT + L +E EE ++ K+ EEE K E+EEE K ++ + +
Sbjct: 3 MLTKDIEILRRENEELTEKMKKAEEEY----KLEKEEEISNLKAAFEKNINTERTLKTQA 58
Query: 107 LNNCSLVVKRREF 119
+N + ++ R++F
Sbjct: 59 VNKLAEIMNRKDF 71
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.0 bits (67), Expect = 1.9
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 23/107 (21%)
Query: 116 RREFFVLLGASSAGKTTLLKAIV-GLKNISQGEIWV-------------LGGHPASIYHK 161
++ + G + G TTL K I+ L + + I + L G AS H
Sbjct: 44 KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIH- 102
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFF-GMIYGMDE----SIWLFQ 203
S + P KE + + DE LF+
Sbjct: 103 ---SILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFK 146
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 29.8 bits (66), Expect = 1.9
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKE 98
L + +EE + + +DEG ++ EE D +
Sbjct: 457 LARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAES 496
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.8 bits (66), Expect = 1.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 60 EKEKEEE-EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E+ E + ++ E D +KE E+ D + + + +
Sbjct: 360 ANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK
snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Length = 104
Score = 28.2 bits (62), Expect = 1.9
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD-EGKNTEKEELKPSNVVLN 108
EL E LEK EDE E + + E E + + E +L N +
Sbjct: 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
F++ S AGKT+L++A+V
Sbjct: 10 FIISAPSGAGKTSLVRALV 28
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 2.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
V G S GK++LL AI + EI
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTNEI 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 111 SLVVKRREFFVL-LGASSAGKTTLLK 135
+ K RE +L LG +AGKTT+LK
Sbjct: 11 KMKQKERELRLLMLGLDNAGKTTILK 36
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 15/52 (28%)
Query: 115 KRREFFVLL-GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK 161
+ F + + G +++GKTTL +A+ LG A + Y+K
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALART----------LGERVALLPMDHYYK 44
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.9 bits (65), Expect = 2.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 121 VLLGASSAGKTTLLKAI 137
V G +GKTT LK I
Sbjct: 18 VYYGPGLSGKTTNLKWI 34
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 29.0 bits (66), Expect = 2.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 120 FVLLGASSAGKTTLLKAI 137
VL G S AGK+TLLK +
Sbjct: 7 VVLSGPSGAGKSTLLKKL 24
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 29.1 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L +E E E +E E K + K+E EE+A + L+
Sbjct: 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALE 49
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 29.1 bits (66), Expect = 2.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VL S GKTT+ ++
Sbjct: 30 LVLSSPSGCGKTTVANKLL 48
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.4 bits (67), Expect = 2.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
+ G S GK++LL AI + E+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEV 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.0 bits (66), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VL G S GK T+ +A+
Sbjct: 11 IVLSGPSGVGKGTVREAVF 29
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.0 bits (64), Expect = 2.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 121 VLLGASSAGKTTLLKAIVGL 140
+L G SSAGK+ +++ + +
Sbjct: 7 ILNGGSSAGKSGIVRCLQSV 26
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.9 bits (64), Expect = 2.8
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 56 CYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
Y+ E + + EE ++
Sbjct: 213 HYSNEVYELAQVLRWAGPEERLRRVAERVAARV 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.0 bits (66), Expect = 2.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VL G S GK T+ K I
Sbjct: 9 IVLSGPSGVGKGTVRKRIF 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.8 bits (65), Expect = 2.8
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 237 ILHKPQLIILD---EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
+ + +++D + + RK + L +V T+ T+QY + A
Sbjct: 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFG 176
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.0 bits (65), Expect = 2.9
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 115 KRREFFVLL-GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK 161
R F + + G +++GK+T+ + I+ + + Q E+ + ++K
Sbjct: 22 SMRPFLIGVSGGTASGKSTVCEKIM--ELLGQNEVEQRQRKVVILSQDRFYK 71
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.8 bits (64), Expect = 3.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 121 VLLGASSAGKTTLLKAI 137
+L+G +GK+++ K +
Sbjct: 24 LLMGLRRSGKSSIQKVV 40
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A
{Bos taurus} SCOP: h.1.27.1
Length = 71
Score = 26.7 bits (58), Expect = 3.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 53 TLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVV----LN 108
T + L EKEE ++ KE +E+ K+EE A K +++L + +N
Sbjct: 3 TSDVANLANEKEELNNKLKEAQEQLSR--LKDEEISAAAIKAQFEKQLLTERTLKTQAVN 60
Query: 109 NCSLVVKRRE 118
+ ++ R+E
Sbjct: 61 KLAEIMNRKE 70
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 28.4 bits (63), Expect = 3.6
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E +E E + + E +E +++ E+ +E + + + +
Sbjct: 4 AELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAE 46
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 28.3 bits (64), Expect = 3.6
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLKAI 137
+ E + +G +GKTT + I
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVI 42
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 28.1 bits (62), Expect = 3.8
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 64 EEEEDEGKE--EEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
EE ++G E E+ + E +E EE + K+ E + +V
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGG 52
Score = 28.1 bits (62), Expect = 4.3
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + E+ + E DE EE+ + +G+ T+
Sbjct: 6 EAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANG 45
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 28.3 bits (62), Expect = 3.9
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
++ EC L + E+E+ + + EE + ++ +E +
Sbjct: 132 MFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQEND 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 239 HKPQLIILD---EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
+ +++D + + R + L +V G G T I +Q
Sbjct: 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGG 181
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.3 bits (62), Expect = 4.1
Identities = 7/48 (14%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 61 KEKEEEEDEGKEEEEE-KEDEGKKEEEEEADEGK---NTEKEELKPSN 104
+E++ + + + + E E +++ +++ +E + + E+ K +N
Sbjct: 106 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 153
Score = 28.3 bits (62), Expect = 4.3
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 60 EKEKEEEE--DEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E + + E +E+ ++ +E + + E+ ++ K +
Sbjct: 115 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 28.7 bits (64), Expect = 4.2
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 217 ERPVKYLSGGQKRRLSFTIA------ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
ERP + LSGG++ +S ++A + +DE +D ++++ +L+
Sbjct: 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333
Query: 271 KGRTVI 276
+ ++
Sbjct: 334 LNKVIV 339
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 111 SLVVKRREFFVL-LGASSAGKTTLLK 135
L +E +L LG AGKTT+L
Sbjct: 11 KLWGSNKELRILILGLDGAGKTTILY 36
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 28.7 bits (64), Expect = 4.3
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 103 SNVVLNNCSLVVKRREFFVLL-GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--- 158
S L N F + + G +++GK+++ IV + + Q E+ +
Sbjct: 7 SEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIV--QLLGQNEVDYRQKQVVILSQD 64
Query: 159 -YHK 161
+++
Sbjct: 65 SFYR 68
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 28.3 bits (64), Expect = 4.7
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEI 148
+L G S GK+++L + G + E+
Sbjct: 169 ILAGPSGVGKSSILSRLTGE-ELRTQEV 195
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 28.7 bits (63), Expect = 4.8
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ + + LEK+ + E E + E + + + E+ + EK+ L
Sbjct: 335 VEKSEAKATELEKKLDSELTARHELQVEMKK--MENDFEQKLQDLQGEKDALD 385
>2j3x_A C2 toxin component I; ADP-ribosyltransferase; 1.75A {Clostridium
botulinum} PDB: 2j3v_A 2j3z_A
Length = 431
Score = 28.4 bits (62), Expect = 4.8
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREF-FVL 122
+E D + E E ++ GK+EE+ + N E+ + + + F
Sbjct: 5 KEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSS 64
Query: 123 LGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI 182
L A K + + ++ I + + A Y ++G + + I
Sbjct: 65 LTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDI 124
Query: 183 -KETLNFF 189
ETL+
Sbjct: 125 SDETLDKV 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.9 bits (63), Expect = 4.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VL G S+ GK+T+++ +
Sbjct: 23 VVLSGPSAVGKSTVVRCLR 41
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.9 bits (63), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 120 FVLLGASSAGKTTLLKAI 137
V+ G S GK TL+K +
Sbjct: 15 LVVCGPSGVGKGTLIKKV 32
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.5 bits (63), Expect = 5.0
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 117 REFFVLLGASSAGKTTLLKAIV----GLKNISQ----GEIWVLGGHPASIYHKTAGSKVG 168
++ + +G +GK+T + + G NI++ I Y K V
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 169 YMPQELA 175
M + A
Sbjct: 62 GMQFDTA 68
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLK 135
+E +L LG +AGKTTLLK
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLK 34
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 27.7 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
++ E+ + K E E E +E E E D+ KN ++++
Sbjct: 17 RVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIR 58
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.0 bits (63), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLK 135
+E V+ +G +AGKTT+L
Sbjct: 18 GSQEHKVIIVGLDNAGKTTILY 39
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.9 bits (62), Expect = 5.4
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 108 NNCSLVVKRREFFVLL--GASSAGKTTLLKAIV 138
++ LV + + F++ G +++GKTTL K +
Sbjct: 10 HSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQ 42
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.8 bits (62), Expect = 5.5
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 117 REFFVLLGASSAGKTTLLKAIV----GLKNISQ----GEIWVLGGHPASIYHKTAGSKVG 168
++ + +G +GK+T + + G NI++ I Y K V
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 169 YMPQELA 175
M + A
Sbjct: 62 GMQFDTA 68
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus}
SCOP: b.82.1.3
Length = 300
Score = 28.3 bits (63), Expect = 5.6
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 132 TLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190
+ + G + GE W H + S V Q+L+ EL K G
Sbjct: 23 EWIALLKGFRQSGIGESWEFSAHTSRP------STVLVKGQQLS-MIELFSKHRDELLG 74
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.8 bits (63), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 120 FVLLGASSAGKTTLLKAI 137
V+ G S GK+TLLK +
Sbjct: 4 IVISGPSGTGKSTLLKKL 21
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 28.4 bits (64), Expect = 6.0
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKK 83
+++ +E E E +++G
Sbjct: 232 YVVYDKEDPSKELFTTYEYPHEYKEKGHP 260
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.6 bits (62), Expect = 6.2
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLKAI 137
+E VL LG ++GKTT++ +
Sbjct: 18 GSKEVHVLCLGLDNSGKTTIINKL 41
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.0 bits (62), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
+L+G S +GK+++ I N S + LG
Sbjct: 7 LLMGRSGSGKSSMRSII--FSNYSAFDTRRLG 36
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 28.1 bits (63), Expect = 6.4
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+KE ++DE +++ + + + T++E
Sbjct: 243 AQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEG 283
Score = 28.1 bits (63), Expect = 6.5
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 61 KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
K + + + + +KE G +E+E+ + + +E P
Sbjct: 229 KFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVA 272
Score = 27.7 bits (62), Expect = 6.9
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
EL + +L + + + +E D +KE + DE ++ + +
Sbjct: 213 ELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDD 266
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 27.6 bits (62), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLK 135
+E V+ +G +AGKTT+L
Sbjct: 13 NHQEHKVIIVGLDNAGKTTILY 34
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 28.3 bits (64), Expect = 6.8
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 55 ECYTLEKEKEEEEDEGKEEEEEKEDEGKK 83
+++ +E E E +++G
Sbjct: 128 YVVYDKEDPSKELFTTYEYPHEYKEKGHP 156
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.5 bits (62), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 120 FVLLGASSAGKTTLLKAI 137
V+ G S GK TL+K +
Sbjct: 26 LVICGPSGVGKGTLIKKL 43
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA,
isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo
sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A*
1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A*
1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 28.2 bits (62), Expect = 6.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKK 83
+K K+EEE + K EEE+ EG K
Sbjct: 19 KKPKKEEEQKWKWWEEERYPEGIK 42
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E*
1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B
1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B*
1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 27.6 bits (62), Expect = 8.1
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEA 89
E +E E + + E E EA
Sbjct: 226 RGGVVEPSPSYALVQEAEATETPEGESEVEA 256
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.3 bits (61), Expect = 8.3
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 111 SLVVKRREFFVL-LGASSAGKTTLLK 135
S + +++ +L +G +AGKTT+L
Sbjct: 22 SRIFGKKQMRILMVGLDAAGKTTILY 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 27.9 bits (62), Expect = 8.4
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 113 VVKRREFFVLLGASSAGKTT-LLKAIVGLKNISQGEIWVLGGHP-----ASIYHKTAGSK 166
++K+ VL AGKT L I+ + VL P + + G
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL--APTRVVLSEMKEAFHGLD 61
Query: 167 VGYMPQELAMFGELTI 182
V + Q + G
Sbjct: 62 VKFHTQAFSAHGSGRE 77
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 28.1 bits (63), Expect = 8.4
Identities = 4/40 (10%), Positives = 9/40 (22%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ + K E E ++ E +
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 942
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 27.6 bits (60), Expect = 8.5
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ EE + + +EK + + +E + E L+
Sbjct: 80 IQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ 121
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 27.5 bits (62), Expect = 8.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEE 87
EE DE E + + K EEE
Sbjct: 172 YEEIDEVMYEARQAVVDQAKLEEE 195
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 28.0 bits (61), Expect = 8.8
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 31 YTLCHGCHKFTIRLWVLLLYELTLE---CYTLEKEKEEEEDEGKE------EEEEKEDEG 81
+TL C + + + LE C T E E G E +E+ K+
Sbjct: 492 FTLATKCRFNELLKSNPDIIDAVLEGTLCLTPSAGWESGELGGYELYMMDDDEDNKQYLK 551
Query: 82 KKEEEEEADEGKNTEKEELKPSNVVLNNCSLV 113
+ E+ ++ L N +LV
Sbjct: 552 EDVEDASVYRADDSGDSVLINDPPAWNTFNLV 583
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.3 bits (61), Expect = 8.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 124 GASSAGKTTLLKAIV 138
G S +GKTTL +
Sbjct: 29 GLSRSGKTTLANQLS 43
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 27.2 bits (61), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 111 SLVVKRREFFVL-LGASSAGKTTLLK 135
L+ R+ VL LG +AGKT++L
Sbjct: 15 GLLPADRKIRVLMLGLDNAGKTSILY 40
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 27.2 bits (61), Expect = 9.2
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 20/64 (31%)
Query: 111 SLVVKRREFFVL-LGASSAGKTTLLKAI------------------VGLKNISQGEIWVL 151
L + ++ ++ LG +AGKTTLL + + + ++ + L
Sbjct: 18 FLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF-TTFDL 76
Query: 152 GGHP 155
GGH
Sbjct: 77 GGHI 80
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.9 bits (61), Expect = 9.4
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
E ++ E+E G+ E ++ D+ + E+ + ++
Sbjct: 676 EAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.1 bits (61), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 115 KRREFFVL-LGASSAGKTTLLKAI 137
RE +L LG AGKTT+L +
Sbjct: 4 MTREMRILILGLDGAGKTTILYRL 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,884,882
Number of extensions: 424382
Number of successful extensions: 2684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2305
Number of HSP's successfully gapped: 404
Length of query: 457
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,993,456
Effective search space: 1437644160
Effective search space used: 1437644160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)