RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10858
(457 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 162 bits (411), Expect = 8e-48
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ +N +L +K EF VLLG S GKTT L+ I GL+ ++G I+ + K
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
+ + Q A++ +T+ E + F I + ++R + +L++ L R
Sbjct: 78 R--NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 135
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
LSGGQ++R++ AI+ +P ++++DEP +D +R M + ++ T I T
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
EA +A + +G+++ SP
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPT 222
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 159 bits (404), Expect = 8e-47
Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+L S ++ E F L+G + AGKTT L+ I L S G + V G + H+
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE- 72
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
+ Y+P+E + + E L F Y S + + + + L ++ V
Sbjct: 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 132
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
S G R+L A++ P+L ILDEP G+D L + + +L+ +G T+++++
Sbjct: 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 192
Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
+ E +A ++ G I+ + + K +Y + +VF ++
Sbjct: 193 MLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV 237
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 149 bits (377), Expect = 2e-42
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 25/244 (10%)
Query: 74 EEEKEDEGKKEEEEEADEGKNTEKEELKPSNV------VLNNCSLVVKRREFFVLLGASS 127
EE + +K ++ D ++++ + S++ VL N +L +++ E + G++
Sbjct: 13 EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTG 72
Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187
+GKT+LL I+G S+G I G +V + Q + TIKE +
Sbjct: 73 SGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG-TIKENII 118
Query: 188 FFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFTIAILHKPQ 242
F + + + K L LSGGQ+ R+S A+
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
L +LD P +D +++++ + +T I+ T +E A ++ L++G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238
Query: 303 DSPD 306
+
Sbjct: 239 GTFS 242
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 144 bits (364), Expect = 5e-41
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 3/207 (1%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
+ + L V R + L+GA+ AGKTT L AI GL +G+I G +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 163 AGSK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220
+ +P+ +F ELT+ E L E I +S +L L++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
LSGG+++ L+ A++ +P+L+++DEP +G+ P++ +++++Q +G T+++ Q
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
A A L G+I+ +
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKAS 224
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 143 bits (361), Expect = 1e-40
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 10/211 (4%)
Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
L N +L +K EF ++G S +GK+T+L I L ++GE+++
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--- 217
K K+G++ Q+ + LT E + + + ++ LK+ LE
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRT 274
LSGGQ++R++ A+ + P +I+ D+P +D +++ LL+ + G+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
V++ T I A + +L G + ++
Sbjct: 199 VVVVTHDINVARFGERIIYLKDGEVEREEKL 229
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 143 bits (363), Expect = 1e-40
Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 17/236 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG-HPASIYHK 161
L+ S+ V + + +++G + +GK+TL+ I G +G ++ +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR----------KYSHVL 211
+ Q E+T+ E L + G LF + K +L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
+ L R LSGGQ + + A++ P++I++DEP GV P + +++ +
Sbjct: 136 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 195
Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG-FKSKYSMPKLSDVF 321
KG T ++ ++ + + ++ G+IIA+ + K+ S PK+ +++
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 251
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 140 bits (355), Expect = 2e-39
Identities = 49/221 (22%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---------- 152
+ VL SL + + ++G+S +GK+T L+ I L+ S+G I V G
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 153 ---GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYS 208
+ +++ + Q ++ +T+ E + + + G+ + + KY
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 133
Query: 209 HVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
+ + + +LSGGQ++R+S A+ +P +++ DEP +DP + + ++Q
Sbjct: 134 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 193
Query: 267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
+G+T+++ T + A +S V FL++G+I + P+
Sbjct: 194 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 137 bits (347), Expect = 1e-38
Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
VV + +L + EF V +G S GK+TLL+ I GL+ I+ G++++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PP 69
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
A VG + Q A++ L++ E ++F + G + + ++ + + VL+L + L+R K
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 129
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
LSGGQ++R++ ++ +P + +LDEP +D +R +M + ++ GRT+I T
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 189
Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
EA A ++ L GR+ P
Sbjct: 190 DQVEAMTLADKIVVLDAGRVAQVGKPL 216
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 136 bits (345), Expect = 3e-38
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH----PASI 158
+ SL VK EF +LLG S GKTT L+ I GL+ S+G+I++ I
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
+ + + Q A++ +T+ + + F + + ++R+ + +L L L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVI 276
R + LSGGQ++R++ AI+ KPQ+ ++DEP +D +R RM L ++ G T I
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
T EA +A + +G + SPD
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 136 bits (344), Expect = 5e-38
Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 6/207 (2%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYHKT 162
LNN SL V + + ++GAS AGK+TL++ + L+ ++G + V G +
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
A ++G + Q + T+ + + + ++ + ++ L + +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQ 280
LSGGQK+R++ A+ P++++ DE +DP + + +LL+ G T+++ T
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
++ VA + G +I QD+
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQDTVS 226
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 135 bits (342), Expect = 2e-37
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L + +L +++ E +G S GK+TL+ I +++ G+I + G + + +
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPNL------E 217
++G + Q+ +F T+KE + G DE + + ++ LP E
Sbjct: 93 QIGLVQQDNILF-SDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150
Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
R VK LSGGQK+RLS L+ P ++ILDE +D + + L V K RT ++
Sbjct: 151 RGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLI 208
Query: 278 TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+ A ++ + G I+ +
Sbjct: 209 VAHRLSTITHADKIVVIENGHIVETGTHR 237
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 132 bits (333), Expect = 2e-36
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
+L + S + G S GK+T+ + + GEI + G +I + S
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY--- 222
++G++ Q+ A+ TI+E L + DE +W ++ ++
Sbjct: 77 QIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
+SGGQ++RL+ A L P++++LDE +D + L + KGRT ++
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVI 194
Query: 279 TQYIEEANDASEVAFLYKGRIIAQDSPD 306
+ DA ++ F+ KG+I +
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHN 222
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 131 bits (331), Expect = 3e-36
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 18/225 (8%)
Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
L S V+ E L+G + AGK+TLL + G+ + +G I G +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 72
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLS 224
Y+ Q+ + L E + + L L + L R LS
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQLS 127
Query: 225 GGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
GG+ +R+ +L QL++LDEP +D + + +L +G ++M
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
++ + A L G+++A + + P L+ +
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEV---LTPPNLAQAY 229
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 130 bits (327), Expect = 3e-36
Identities = 38/194 (19%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
VL ++ +++ G + GKTTLLK I +GEI G +
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-----VPITKV 68
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
K+ ++P+E+ + ++++++ L +YG+ + ++ +++ +L++ + L
Sbjct: 69 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN--EIMDALESVEVLDLKKKLGEL 126
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYI 282
S G RR+ +L ++ +LD+P V +D + ++ + ++ KG +I + + +
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 186
Query: 283 EEANDASEVAFLYK 296
+ L+K
Sbjct: 187 SYCD---VNENLHK 197
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 130 bits (328), Expect = 5e-36
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
N L+N SL V+ E+FV+LG + AGKT L+ I G G I + G + +
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK- 71
Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
+ ++ Q ++F + +K+ L F + + + + + + L+R L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI--EHLLDRNPLTL 128
Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYI 282
SGG+++R++ A++ P++++LDEP +DP ++ ++L V K TV+ T
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 283 EEAND-ASEVAFLYKGRIIAQDSPD 306
EA A +A + G++I P+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPE 213
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 130 bits (328), Expect = 1e-35
Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 13/238 (5%)
Query: 79 DEGKKE-EEEEAD-EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA 136
DEGK+ + D E +N L N +L + + L+G S +GK+T+
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 137 IVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196
I +I +G I + G + ++V + Q T+ + +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAYARTEEYSR 119
Query: 197 ESIW--LFQMRKYSHVLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248
E I + K+ N E V LSGGQ++R++ A+L ++ILDE
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDE 178
Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+D + + L K RT ++ + A E+ + G I+ + +
Sbjct: 179 ATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 235
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 129 bits (325), Expect = 2e-35
Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 8/210 (3%)
Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
S V+L+N +L +K+ E ++G S +GK+TL K I G++ + G A
Sbjct: 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW 74
Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
+VG + Q+ + +I + ++ +++ I+ ++ +
Sbjct: 75 LRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 223 ------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
LSGGQ++R++ A+++ P+++I DE +D + + + KGRTVI
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVI 192
Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
+ + +A + + KG+I+ Q
Sbjct: 193 IIAHRLSTVKNADRIIVMEKGKIVEQGKHK 222
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 129 bits (326), Expect = 2e-35
Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 9/214 (4%)
Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+P +VL + ++ E L+G + +GK+T+ + L + G++ + G H
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 83
Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN--- 215
+ +V + QE +FG +++E + + E I ++ +H + LP
Sbjct: 84 RYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 216 --LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKG 272
++ LSGGQ++ ++ A++ KP ++ILD+ +D + ++ LL +
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
R+V++ TQ++ A + FL G I +
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 236
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 125 bits (314), Expect = 7e-34
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 6/220 (2%)
Query: 93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
KN K K V L+N ++ ++ E F +LG S AGKTT ++ I GL S GE++
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 153 ---GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
+ K+G + Q A++ LT E + F M + ++ + +
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK 126
Query: 210 VLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQV 267
+L + + L + LSG Q++R++ A++ P L++LDEP +D +R L +V
Sbjct: 127 ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
G T+++ + + A V L KG+++ P+
Sbjct: 187 QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 115 bits (290), Expect = 2e-30
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 8/201 (3%)
Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168
N + R ++ VLLG + AGK+ L+ I G+ +GE+ + G + +G
Sbjct: 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIG 73
Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ 227
++PQ+ A+F L++ + + E ++R+ + L + + L+R LSGG+
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR--RVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEAN 286
++R++ A++ +P+L++LDEP VD + + + L V ++ T + EA
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 287 D-ASEVAFLYKGRIIAQDSPD 306
A EVA + GRI+ +
Sbjct: 192 MLADEVAVMLNGRIVEKGKLK 212
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 70.8 bits (172), Expect = 5e-15
Identities = 23/180 (12%), Positives = 44/180 (24%), Gaps = 25/180 (13%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180
++ G GKTTL+K IV W +T + ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS--- 60
Query: 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
+ + ++ A +
Sbjct: 61 -----------SKFFTSKKLVGSYG----------VNVQYFEELAIPILERAYREAKKDR 99
Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
++II+DE + R Q+ V+ T + E+ L +I
Sbjct: 100 RKVIIIDEIGKMELFSKKFRDLV-RQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.5 bits (124), Expect = 3e-08
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR--LSFTIAI----LHKPQLI 244
E + + K + ERP+ +LSGG++ L+F +A+ + L+
Sbjct: 170 TEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 229
Query: 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGR 298
ILDEP +D R+++ +++ ++ K VI+ + E + A V + K
Sbjct: 230 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVE 289
Query: 299 IIA 301
+++
Sbjct: 290 VVS 292
Score = 32.4 bits (72), Expect = 0.11
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 10/89 (11%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
+++G + +GK++LL AI + L K
Sbjct: 25 INLIIGQNGSGKSSLLDAI----------LVGLYWPLRIKDIKKDEFTKVGARDTYIDLI 74
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKY 207
S + M++
Sbjct: 75 FEKDGTKYRITRRFLKGYSSGEIHAMKRL 103
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 51.8 bits (122), Expect = 9e-08
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR------LSFTIAILHKPQLI 244
E + + K + ERP+ +LSGG++ L+ ++ + + L+
Sbjct: 247 TEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 306
Query: 245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296
ILDEP +D R+++ +++ ++ K VI+ + E + A V +
Sbjct: 307 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISL 358
Score = 29.4 bits (64), Expect = 0.86
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 119 FFVLLGASSAGKTTLLKAI 137
+++G + +GK++LL AI
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 36.6 bits (83), Expect = 0.005
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
L F I +LDE +D +R+ ++ I+ +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 34.3 bits (78), Expect = 0.025
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
L ++ E + + +E+E +E+E+ EG E +K
Sbjct: 248 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 290
Score = 32.4 bits (73), Expect = 0.11
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
L KE+E +E+E+ EG ++E + ++
Sbjct: 259 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 28.9 bits (64), Expect = 1.3
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEAD-EGKNTEKEELK 101
++ + +E E + +E E +E + + E ++L+
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
Score = 27.8 bits (61), Expect = 2.7
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ E+ +E + E+ E + +E+E K E+E+L
Sbjct: 229 KNEQMMEQKERSYQEHLKQ-LTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.5 bits (75), Expect = 0.031
Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 5/152 (3%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
L G GKTTL+ + S + + G V + +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 182 IKETLNFFGMIYGM---DESIWLFQMRKYSHVLKLPNLERPVKYL--SGGQKRRLSFTIA 236
++ G D + + + + G+ S
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
+ L +G P+ + + L++
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLALVEEI 157
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 33.4 bits (75), Expect = 0.035
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 6/121 (4%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
+LLGA +GK+T++K + + G E G + G
Sbjct: 6 LLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 65
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKY----SHVLKLPNLERPVKYLSGGQKRRLSFT 234
I + + E + +M + + L +K
Sbjct: 66 VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK 125
Query: 235 I 235
I
Sbjct: 126 I 126
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 32.7 bits (73), Expect = 0.042
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIVG 139
RE ++LG +AGKTT+LK G
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNG 24
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.5 bits (73), Expect = 0.056
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167
+L+G S GKT LL ++ I +G + G KV
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 56
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.12
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
+ LG +AGKTTLL +
Sbjct: 4 LFLGLDNAGKTTLLHMLKN 22
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.5 bits (70), Expect = 0.12
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 RREF-FVLLGASSAGKTTLLKAIVGLKNISQGEIW 149
+E +++G +AGKTT+L + +
Sbjct: 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI 47
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 31.2 bits (69), Expect = 0.14
Identities = 13/90 (14%), Positives = 26/90 (28%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
+LLGA GK+ L + G+++ + E + + S + Y E
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
L + + +
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASEL 93
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.2 bits (69), Expect = 0.17
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLK 141
F ++G + GK+TLL ++G K
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQK 29
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.9 bits (68), Expect = 0.18
Identities = 12/90 (13%), Positives = 24/90 (26%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
VL+G GK+TL G+ + + VLG G + ++
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
+ + + +
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEK 95
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.7 bits (68), Expect = 0.21
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 119 FFVLLGASSAGKTTLLKAI 137
VL G S+ GK+T+++ +
Sbjct: 4 VVVLSGPSAVGKSTVVRCL 22
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.8 bits (68), Expect = 0.22
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
+ G S+ GK+TL+ + G K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK 24
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 30.6 bits (68), Expect = 0.22
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 117 REFFVLLGASSAGKTTLLKAIV 138
R+ VLLGA G+ + ++
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLI 24
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.4 bits (67), Expect = 0.25
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
++LG AGKTT+L +
Sbjct: 9 LILGLDGAGKTTILYRLQV 27
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.7 bits (68), Expect = 0.25
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 117 REF-FVLLGASSAGKTTLLK 135
RE +LLG +GK+T +K
Sbjct: 1 RELKLLLLGTGESGKSTFIK 20
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.26
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 120 FVLLGASSAGKTTLLKAIVGLK 141
+++G + GK+TL +V K
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK 24
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.4 bits (67), Expect = 0.26
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW 149
+++G +AGKTT+L + + ++
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTI 32
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 30.5 bits (67), Expect = 0.27
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
V+ G +AGK++LL A+ G +
Sbjct: 5 VIAGRPNAGKSSLLNALAGRE 25
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.27
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 116 RREF-FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
+E ++LG +AGKTT+L + ++++ I +G + ++ +K V +
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVETVTYKNVKFNV-WDVGGQ 66
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQM 204
L G+I+ +D +
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRID 96
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.6 bits (68), Expect = 0.30
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 119 FFVLLGASSAGKTTLLKAI 137
+++ S AGK++L++A+
Sbjct: 4 LYIVSAPSGAGKSSLIQAL 22
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.5 bits (67), Expect = 0.30
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 115 KRREFFV-LLGASSAGKTTLLKAIVGLK 141
K FV ++G + GK+TLL ++G+K
Sbjct: 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVK 29
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/111 (14%), Positives = 32/111 (28%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
K+ V LG +AGKTTLL + + +I T + +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+ + ++ D L + ++ + + G
Sbjct: 71 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 0.31
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
+LLGA AGK T + I+ G+ IS G++ S K A M +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKD---IMDAGKLVT 60
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
EL I + + R + V Y
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDY 105
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.7 bits (69), Expect = 0.31
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 49 LYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
++E + +++ + E+ +E E +E + +EE ++E+E++K
Sbjct: 62 IWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 0.31
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
+LLG AGK T + G+ IS GE++ + A Y+ +
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKR---YLDAGDLVP 60
Query: 178 GELTIK 183
+LT +
Sbjct: 61 SDLTNE 66
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.9 bits (66), Expect = 0.39
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
VLLG AGK T + + +++ G++ +GS++G +
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDML--------RAMVASGSELGKKLKATMDA 58
Query: 178 GELTIKETLNFFGMIY 193
G+L E +
Sbjct: 59 GKLVSDEMVLELIEKN 74
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 30.3 bits (67), Expect = 0.40
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 17/122 (13%)
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
F ++GA+ +GK+ + AI+ +VLGG +A + +L G
Sbjct: 28 FTAIVGANGSGKSNIGDAIL----------FVLGG-------LSAKAMRASRISDLIFAG 70
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL 238
IY +E + + + Y G++ S + IL
Sbjct: 71 SKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDIL 130
Query: 239 HK 240
Sbjct: 131 TA 132
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.9 bits (66), Expect = 0.42
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
+LLG +AGKTTLLK +
Sbjct: 20 LLLGLDNAGKTTLLKQLAS 38
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.9 bits (66), Expect = 0.42
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170
+K+ + ++G +GK T + IV G ++S G++ S K
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEI--ME 62
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
+L + + + R+ +
Sbjct: 63 KGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERK 108
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.6 bits (65), Expect = 0.43
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
V++G + GK+TLL ++
Sbjct: 4 VIVGKPNVGKSTLLNRLLNED 24
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.0 bits (66), Expect = 0.44
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 120 FVLLGASSAGKTTLLKAIVGLK 141
++ G ++GKT+LL +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDS 27
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.6 bits (65), Expect = 0.52
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
+ +G +GKT L ++
Sbjct: 4 LFVGLCDSGKTLLFVRLLT 22
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.8 bits (66), Expect = 0.52
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
++ GA ++GK T + I L +IS G++ S K A +M + +
Sbjct: 7 MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKE---FMEKGQLVP 63
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
E+ + + L +
Sbjct: 64 DEIVVNMVKERLRQPDAQENGWLLDGYPRSYS 95
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.5 bits (65), Expect = 0.53
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
VL+G AGK T + IV G+ +IS G+++ G+ +G ++
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFR--------AAMKEGTPLGLQAKQYMDR 55
Query: 178 GEL 180
G+L
Sbjct: 56 GDL 58
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.6 bits (65), Expect = 0.54
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 122 LLGASSAGKTTLLKAIVGLK 141
L+G +AGK++LL A+
Sbjct: 6 LVGYPNAGKSSLLAAMTRAH 25
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.55
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
L+G +GKTT + I
Sbjct: 6 TLVGLQYSGKTTFVNVIAS 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 29.5 bits (65), Expect = 0.57
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 120 FVLLGASSAGKTTLLKAIVG-----------LKNISQGEIWVLGGHPASIYHKTAGSKVG 168
+LLG GK++L+ V ++ V G TAG +
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
+ G T + + S W + Y+ V + +
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 116
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 29.6 bits (65), Expect = 0.57
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
F+L+G +A ++I + ++ P Y + SK + + +
Sbjct: 7 FLLIGGGTAA-FAAARSI--RARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKT 63
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
L F G + SI+ Y LP++E
Sbjct: 64 LR-------FKQWNGKERSIYFQPPSFYVSAQDLPHIEN 95
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.5 bits (65), Expect = 0.58
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIVG 139
RE+ V+LG+ GK+ L V
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVT 25
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 29.6 bits (65), Expect = 0.58
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
++G + GK+TL AI+ + I P G K ++
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.1 bits (67), Expect = 0.58
Identities = 35/331 (10%), Positives = 86/331 (25%), Gaps = 41/331 (12%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP-SNVVLNNCSLVVKRRE 118
K+ +E + + + LK + VLN
Sbjct: 9 GYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLN---------- 58
Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
+ G + +GK++ + + G+ N +G + T P
Sbjct: 59 -VAVTGETGSGKSSFINTLRGIGNEEEGAA------KTGVVEVTMERHPYKHPNI----P 107
Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL 238
+ + + D + + +Y + + R K ++ I+++
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA-TRFKK-----NDIDIAKAISMM 161
Query: 239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298
K + + VD + Q F K + + + +
Sbjct: 162 KKEFYFVRTK----VDSDITNEADGEPQTF-DKEKVLQDIRLNCVN---TFRENGIAEPP 213
Query: 299 IIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRK 358
I + + Y P L D + + + + +E ++
Sbjct: 214 IFLLSNKN--VCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDS---VIEKKRQFLKQR 268
Query: 359 IFPVAIFNATMGSPPAGLKMGVVNYELRGEF 389
I+ + P+ + + E +
Sbjct: 269 IWLEGFAADLVNIIPSLTFLLDSDLETLKKS 299
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.5 bits (65), Expect = 0.59
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 121 VLLGASSAGKTTLLKAIV 138
VL G S AGK+TLLK +
Sbjct: 4 VLSGPSGAGKSTLLKKLF 21
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.5 bits (65), Expect = 0.64
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 117 REF-FVLLGASSAGKTTLLK 135
R +LLGA +GK+T LK
Sbjct: 1 RLVKILLLGAGESGKSTFLK 20
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.2 bits (64), Expect = 0.65
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIVG 139
E+ V++GA GK+ L ++
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQ 25
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.2 bits (64), Expect = 0.69
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP---- 171
RE+ V+LG+ GK+ L V + + + + + + + +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQK 228
++ +L +K F + +S + +L++ + E L G +
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.5 bits (65), Expect = 0.69
Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 22/187 (11%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
++G GKTTL++AI G + + + K+GY + +
Sbjct: 11 IGVVGHVDHGKTTLVQAITG----------IWTSKHSEELKRGMTIKLGYAETNIGVCES 60
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH 239
E +R+ S + + G + ++ ++
Sbjct: 61 CKKPEAYVTEPSCKSCGSDDEPKFLRRISFI------------DAPGHEVLMATMLSGAA 108
Query: 240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
IL P + R + +G +I+ + + + + + +
Sbjct: 109 LMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 168
Query: 300 IAQDSPD 306
+
Sbjct: 169 TKGTWAE 175
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 0.69
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
++LG S GKT+L+ V
Sbjct: 5 VIILGDSGVGKTSLMHRYVN 24
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.2 bits (64), Expect = 0.71
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIV 138
RE LLG + GK++++ V
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFV 25
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 29.3 bits (64), Expect = 0.75
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
++LG S GKT+L+ V
Sbjct: 5 VIILGDSGVGKTSLMNQYVN 24
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.2 bits (64), Expect = 0.75
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 111 SLVVKRREF-FVLLGASSAGKTTLLKAIVGLKNISQGEIW 149
L +E ++LG AGKTT+L + + ++
Sbjct: 10 KLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTI 49
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.1 bits (64), Expect = 0.76
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 122 LLGASSAGKTTLLKAIVGLK 141
L+G S GK+TLL + K
Sbjct: 6 LVGFPSVGKSTLLSVVSSAK 25
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.78
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 121 VLLGASSAGKTTLLKAI 137
V+ G S GK+TLLK +
Sbjct: 5 VISGPSGTGKSTLLKKL 21
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 0.80
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
V++G + GK+++++
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.3 bits (65), Expect = 0.81
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 120 FVLLGASSAGKTTLLK 135
+LLGA +GK+T++K
Sbjct: 9 LLLLGAGESGKSTIVK 24
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.0 bits (64), Expect = 0.86
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
+L+G S GK+ LL V
Sbjct: 5 ILLIGDSGVGKSCLLVRFVE 24
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.0 bits (64), Expect = 0.86
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEI---WVLGGHPASIYHKTAGSKVGYMPQE- 173
++GA +GK T+ I LK++S G++ +L G + KT + +P +
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV 69
Query: 174 ----LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
+ + + G + ++ L + + V+ L +K
Sbjct: 70 MTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQ 122
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.8 bits (63), Expect = 0.91
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 117 REF-FVLLGASSAGKTTLLKAIVG 139
R F +++G S+ GKT L
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCA 24
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.9 bits (63), Expect = 0.96
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 117 REFF----VLLGASSAGKTTLLKAI 137
R FF +LG S+GK+ L+ +
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKL 27
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.6 bits (63), Expect = 0.97
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
VL+G + GKT L++
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQ 27
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 28.7 bits (63), Expect = 0.97
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150
+++G S GK++LL + +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATI 40
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 1.0
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ +LE + E EE + +E E K K+E E E + E
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
EK + E E K EE +E+ N E E
Sbjct: 71 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENRE 110
Score = 27.2 bits (60), Expect = 2.4
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+ +E+ K E ++ E E + K+ EE++
Sbjct: 90 FIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 27.2 bits (60), Expect = 2.6
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ ++ E ++ E + +E+++ E KE
Sbjct: 97 KLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 136
Score = 26.0 bits (57), Expect = 5.3
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
E K E E E ++ + + + K +K E
Sbjct: 64 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKME 103
Score = 26.0 bits (57), Expect = 5.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
K +E E + E+ E E E ++ EE + KE+L
Sbjct: 58 RKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Score = 26.0 bits (57), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADE-GKNTEKEE 99
+K E E +E E +E+++ A+E KN E +E
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 26.0 bits (57), Expect = 6.2
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELK 101
+E E + ++ E E+E K EE EK K
Sbjct: 60 YQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQK 101
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.6 bits (62), Expect = 1.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNIS 144
L G S+ GK++ + +++ KN++
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLA 50
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.6 bits (62), Expect = 1.1
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW 149
G S+AGK++ L + K++++
Sbjct: 20 AFAGRSNAGKSSALNTLTNQKSLARTSKT 48
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.7 bits (63), Expect = 1.2
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIW 149
VL+G S GK+ LL + + +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKST 36
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.3 bits (62), Expect = 1.2
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
F+++G + GK+ LL +
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE 27
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.3 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
+++G SS GKT+ L
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
+L+G S GKT +L
Sbjct: 9 LLLIGDSGVGKTCVLFRFSE 28
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (61), Expect = 1.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VL+G GKTT +K +
Sbjct: 6 LVLVGDGGTGKTTFVKRHL 24
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 1.4
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
+LG S GK++L V + + + + I
Sbjct: 8 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV 47
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.4 bits (62), Expect = 1.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEI 148
+LG AGK T IV G ++S GE+
Sbjct: 5 FVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 35
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.0 bits (61), Expect = 1.4
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 4/110 (3%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQ----GEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
+++G+ GK+ L + + + ++ A
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
+ + F + + + +L++ E L G
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.1 bits (61), Expect = 1.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWV 150
VLLG ++ GK++++ V E +
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 28.0 bits (61), Expect = 1.5
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 121 VLLGASSAGKTTLLKAIV----GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176
++ G GKT++ + I G +++ G++ + + ++
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTH---IIEEKDED 65
Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
++ + G S LF R + V+ L
Sbjct: 66 RLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVL 102
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 1.5
Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 7/151 (4%)
Query: 115 KRREFFV-LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ F+ G +GK+ I G +G ++ T ++ + ++
Sbjct: 24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQL-KLNEQ 82
Query: 174 LAMFGELTIK--ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
L + + ++ + +I+ + LP + K G+ R
Sbjct: 83 FKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP---KYDKSQFKGEGDRC 139
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
I + IL+ +G +P+++
Sbjct: 140 PTGQKIKLPVDIFILEGWFLGFNPILQGIEN 170
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.9 bits (61), Expect = 1.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
++++G GK+ LL
Sbjct: 7 YIIIGDMGVGKSCLLHQFT 25
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.0 bits (61), Expect = 1.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
V LG S GKT+L+ +
Sbjct: 3 LVFLGEQSVGKTSLITRFMY 22
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 28.7 bits (63), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
++G SAGK+++L+ VG
Sbjct: 30 AVVGGQSAGKSSVLENFVGRD 50
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.3 bits (62), Expect = 1.6
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
+ LG S GKTT L
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.1 bits (61), Expect = 1.6
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 120 FVLLGASSAGKTTLLKAI 137
+VL+G S +GK+ + +
Sbjct: 9 YVLMGVSGSGKSAVASEV 26
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.6 bits (63), Expect = 1.6
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 121 VLLGASSAGKTTLLKAIVGLK 141
V++G+ S+GK+++L+ IVG
Sbjct: 28 VVVGSQSSGKSSVLENIVGRD 48
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.9 bits (61), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIW 149
VL+G AGK T IV G +IS G+++
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMF 35
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 1.8
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 18 LILPILTPLTL-----LIYTLCHGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKE 72
L P+ + + +C C K + EL + ++ K+
Sbjct: 85 LAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEH----NELMRQALAIKDSKKRFAAIWTL 140
Query: 73 EEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTT 132
+ + E E++ + + + + LV ++ A
Sbjct: 141 CKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRV 200
Query: 133 L--LKAIVGLKNISQGEIWVLGGHP 155
L + + K+IS + LG +
Sbjct: 201 LSTEEILNIFKHISVKDFTSLGFNE 225
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
VLLG GKT+L+
Sbjct: 6 VVLLGEGCVGKTSLVLRYCE 25
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.9 bits (61), Expect = 1.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 120 FVLLGASSAGKTTLLKAIVG 139
+L+G S GK+ LL
Sbjct: 9 LLLIGNSGVGKSCLLLRFSD 28
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.9 bits (61), Expect = 2.0
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
++++G + GK+ LL + ++ + A + +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN 46
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 2.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V++G S GKT LL
Sbjct: 5 IVVVGDSQCGKTALLHVFA 23
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 2.1
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 114 VKRREFFVLLGASSAGKTTLLKAIV 138
++++ V++G + GKT LL
Sbjct: 1 IRKK--LVIVGDGACGKTCLLIVNS 23
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 2.1
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V++G GK+ L +
Sbjct: 9 LVVVGGGGVGKSALTIQFI 27
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
VLLG S+ GK++L+ V
Sbjct: 9 LVLLGESAVGKSSLVLRFV 27
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.6 bits (60), Expect = 2.3
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 118 EF-FVLLGASSAGKTTLLKAIVG 139
++ + GA GK++L+ V
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVK 24
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.1 bits (60), Expect = 2.3
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 60 EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
+ + EEDEG ++ E E+EG++ E + ++
Sbjct: 11 DDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50
Score = 25.9 bits (57), Expect = 5.9
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNN 109
E+ +G + ++ +EDEG + E +EG+ + N
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQ 49
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.7 bits (60), Expect = 2.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V++G GK+ L
Sbjct: 7 LVVVGDGGVGKSALTIQFF 25
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 28.1 bits (62), Expect = 2.4
Identities = 4/50 (8%), Positives = 14/50 (28%)
Query: 51 ELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
E + + LE+ + + E++ + + +
Sbjct: 132 EQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQ 181
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.4 bits (59), Expect = 2.6
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 117 REFFVLLGASSAGKTTLLKAIV 138
++ + +G +GK+T + +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFI 23
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 2.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V++G + GKT LL +
Sbjct: 12 CVVVGDGAVGKTCLLMSYA 30
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.3 bits (59), Expect = 2.8
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 117 REFFVLLGASSAGKTTLLKAI 137
++ +++ G + GK+T K +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRL 22
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 3.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
S GKTTLLK ++
Sbjct: 5 LAFAAWSGTGKTTLLKKLI 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 3.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
+ G + GK+ L+ +
Sbjct: 5 LAIFGRAGVGKSALVVRFL 23
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.3 bits (58), Expect = 3.5
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 57 YTLEKEKEEEEDEGKEEEEEKEDEGK--KEEEEEADEGKNTEKEEL 100
E + + + EE+ K DE + EEE + EKE L
Sbjct: 58 VPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQ-------EKENL 96
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 3.5
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 22/130 (16%)
Query: 111 SLVVKRREFFVLLGASSAGKTTLLKA------------IVGLKNISQGEIWVLGGHPASI 158
LV ++ G S GK+ V ++ IS+ E+ P I
Sbjct: 9 VLVDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIG--RAPKLI 66
Query: 159 YHKTAGSKVGYMPQELAMFGELTIKET----LNFFGMIYGMDESIWLFQMR-KYSHVL-- 211
H +G + + +FG +I LN + ++ + + +L
Sbjct: 67 EHLLEIRGLGIIN-VMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEETLRILDT 125
Query: 212 KLPNLERPVK 221
++ PV+
Sbjct: 126 EITKKTIPVR 135
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 3.6
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 116 RREF-FVLLGASSAGKTTLLKAIV 138
+ ++ V++G GK+ L +
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFI 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 3.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 121 VLLGASSAGKTTLLKAIV 138
V++G + GKT LL +
Sbjct: 9 VVVGDGAVGKTCLLISYT 26
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.8 bits (58), Expect = 3.8
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTA 163
VL+G AGK T + +++ G++ + A
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEA 51
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 27.3 bits (59), Expect = 3.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
V +G + +GKTTL ++ +
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV 39
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.2 bits (59), Expect = 4.0
Identities = 14/128 (10%), Positives = 36/128 (28%), Gaps = 5/128 (3%)
Query: 114 VKRREFFVLLGASSAGKTTL-LKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ 172
+ + GA+ GKT L + + + I + + A G +
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNA-YSWGMDFE 81
Query: 173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS 232
E+ L I + + G+++ + + + ++ G
Sbjct: 82 EMERQNLLKI---VCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFR 138
Query: 233 FTIAILHK 240
+ +
Sbjct: 139 QFVIGVTG 146
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.9 bits (58), Expect = 4.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
V++G + GKT LL +
Sbjct: 6 CVVVGDGAVGKTCLLISYT 24
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 25.7 bits (56), Expect = 4.2
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 61 KEKEEEEDEGKEEEEEK-------EDEGKKEEEEEADEGKNT 95
K++ E + K + + ++E KK +E A +GK
Sbjct: 31 KDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKDGKTG 72
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.9 bits (58), Expect = 4.7
Identities = 24/184 (13%), Positives = 45/184 (24%), Gaps = 11/184 (5%)
Query: 124 GASSAGKTTLLKAIV---GLKNISQGEIW-------VLGGHPASIYHKTAGSKVGYMPQE 173
G S AGK TL KA+ + G I+ + + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF 69
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
++ G L + E ++ L R +
Sbjct: 70 VSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR 129
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS-EVA 292
+ + P + + +RM L ++ + D + VA
Sbjct: 130 DMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVA 189
Query: 293 FLYK 296
L
Sbjct: 190 PLVP 193
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 5.1
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 120 FVLLGASSAGKTTLLKAIV 138
+LG + +GK++L+ +
Sbjct: 8 LGVLGDARSGKSSLIHRFL 26
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.5 bits (57), Expect = 5.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 120 FVLLGASSAGKTTLLKAI 137
+L G +GK+T+ +A+
Sbjct: 7 LLLSGHPGSGKSTIAEAL 24
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.5 bits (57), Expect = 5.9
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 120 FVLLGASSAGKTTLLKAIV---GLKNISQGEI 148
+LG +GK T IV G ++S G++
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 26.5 bits (58), Expect = 6.2
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 132 TLLKAIVGLKNISQGEIWVLGGHP 155
+ + G + GE W H
Sbjct: 22 EWIALLKGFRQSGIGESWEFSAHT 45
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 25.1 bits (55), Expect = 6.9
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 43 RLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKED-EGKKEEEEEADEGKNTEKEELK 101
V + ++ K+ EE D K ++K E E A +G++ E K
Sbjct: 24 EELVQTRNQGDHLLHSTRKQVEEAGD--KLPADDKTAIESALTALETALKGEDKAAIEAK 81
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.1 bits (56), Expect = 7.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 121 VLLGASSAGKTTLLKAI 137
+L G SSAGK+ +++ +
Sbjct: 7 ILNGGSSAGKSGIVRCL 23
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNIS------QGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
+ G GKTTL K + + + S + + + K ++ +
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
+ + + + ++ + + H+L L + P+
Sbjct: 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIV 116
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.1 bits (56), Expect = 7.8
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 121 VLLGASSAGKTTLLKAIV---GLKNISQGEI 148
+LG AGK T + +V ++S G++
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL 42
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 8.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 124 GASSAGKTTLLKAIV 138
G +GKTTL++ V
Sbjct: 8 GYKHSGKTTLMEKWV 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.9 bits (56), Expect = 9.2
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 121 VLLGASSAGKTTLLKAIVG 139
+++G GK++ + +I+G
Sbjct: 36 LVMGKGGVGKSSTVNSIIG 54
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.8 bits (57), Expect = 9.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 59 LEKEKEEEEDEGKEEEEEKEDEGKKEEEE 87
+ + E + KEE+ + ++E +K +E
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,696,039
Number of extensions: 82442
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 185
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)