BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10859
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 293 bits (749), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 164/224 (73%), Gaps = 42/224 (18%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
MLVLVLGDLHIPHR + LPAKFKKLLVPG+IQHILCTGNL TKE++DYLKTLA DVH+VR
Sbjct: 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 70
Query: 61 GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
GDFDE +Y PE+KVVTVG
Sbjct: 71 GDFDENLNY------------------------------------------PEQKVVTVG 88
Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
QF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENKFYINPGSATGA
Sbjct: 89 QFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGA 148
Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKKS 224
+N LE + PSFVLMDIQ+S VVTYVYQLI D+V VERI+YKKS
Sbjct: 149 YNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 163/223 (73%), Gaps = 42/223 (18%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
MLVLVLGDLHIPHR + LPAKFKKLLVPG+IQHILCTGNL TKE++DYLKTLA DVH+VR
Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60
Query: 61 GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
GDFDE +Y PE+KVVTVG
Sbjct: 61 GDFDENLNY------------------------------------------PEQKVVTVG 78
Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
QF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENKFYINPGSATGA
Sbjct: 79 QFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGA 138
Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
+N LE + PSFVLMDIQ+S VVTYVYQLI D+V VERI+YKK
Sbjct: 139 YNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/217 (64%), Positives = 156/217 (71%), Gaps = 42/217 (19%)
Query: 7 GDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEG 66
GDLHIPHR + LPAKFKKLLVPG+IQHILCTGNL TKE++DYLKTLA DVH+VRGDFDE
Sbjct: 8 GDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEN 67
Query: 67 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGL 126
+Y PE+KVVTVGQF+IGL
Sbjct: 68 LNY------------------------------------------PEQKVVTVGQFKIGL 85
Query: 127 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEP 186
HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENKFYINPGSATGA+N LE
Sbjct: 86 IHGHQVIPWGDXASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALET 145
Query: 187 KVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
+ PSFVL DIQ+S VVTYVYQLI D+V VERI+YKK
Sbjct: 146 NIIPSFVLXDIQASTVVTYVYQLIGDDVKVERIEYKK 182
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 33/222 (14%)
Query: 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61
LVL++GDL IP+ LP+ F++LL +I ++LCTGN+ ++E + LK + +V++V G
Sbjct: 27 LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 86
Query: 62 DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ 121
D D P DPE+ + +PE VV +G+
Sbjct: 87 DLDSAIFNP------------------------DPESNGV---------FPEYVVVQIGE 113
Query: 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 181
F+IGL HG+ ++PW DP +L QR+LD DIL++GHTHK +E K ++NPG+ATGAF
Sbjct: 114 FKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAF 173
Query: 182 NPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
+ L P PSF+LM +Q + VV YVY L + V ++ K
Sbjct: 174 SALTPDAPPSFMLMALQGNKVVLYVYDLRDGKTNVAMSEFSK 215
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein
Tm1076: Northeast Structural Genomics Consortium Target
Vt57
Length = 178
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 54/188 (28%)
Query: 4 LVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDF 63
L++ D H+P R + LP + L ++ G+ V +T L+ + + + V G+
Sbjct: 26 LLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDLDTVILLEKFSKEFYGVHGNM 83
Query: 64 DEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
D YP+ K P KV+ V
Sbjct: 84 D----YPDVK-----------------------------------EHLPFSKVLLVEGVT 104
Query: 124 IGLCHGHDIIPWGDPEALALLQRQLDV-----DILISGHTHKFEAYEHENKFYINPGS-A 177
IG+CHG WG P L R L V +++ GHTH+ E ++NPGS A
Sbjct: 105 IGMCHG-----WGAPWDLK--DRLLKVFNEKPQVILFGHTHEPEDTVKAGVRFLNPGSLA 157
Query: 178 TGAFNPLE 185
G++ LE
Sbjct: 158 EGSYAVLE 165
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 110 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 169
+ P ++V+ Q R+ L HGH PE L L + D+L+ GHTH A +
Sbjct: 112 TAPWQQVLLEKQ-RLFLTHGHLF----GPENLPALNQN---DVLVYGHTHLPVAEQRGEI 163
Query: 170 FYINPGSAT 178
F+ NPGS +
Sbjct: 164 FHFNPGSVS 172
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 111 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 170
YPE+ V +G +I HGH + + L ++ + I + GH H A+
Sbjct: 67 YPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKIL 126
Query: 171 YINPGSAT 178
++NPGS +
Sbjct: 127 FLNPGSIS 134
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 52 LASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGH 88
L + VV+G+ D YPE+ V +G +I HGH
Sbjct: 50 LWEGIRVVKGNXDFYAGYPERLVTELGSTKIIQTHGH 86
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 131 DIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 168
+I+P GDPE ALL+R L+ + + K YE +
Sbjct: 203 EILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKK 240
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 89 DIIPWGDPEALALLQRQLD 107
+I+P GDPE ALL+R L+
Sbjct: 203 EILPQGDPETAALLRRALE 221
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 178 TGAFNPLEPKVNPSFVLMDIQSSNV---VTYVYQLI 210
TG +P EP NP VL D +S+ + V+Y+Y L+
Sbjct: 147 TGITDPYEPPENPQLVL-DTESNTIEHNVSYLYSLV 181
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 106 LDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQ-RQLDVDILISGHTHKFEAY 164
++GT+Y V T+ Q G +D++P G L Q +L V + G H F +
Sbjct: 342 INGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPRNQVVELVVPAGVLGGPHPFHLH 401
Query: 165 EHENKFYINPGSATGAF-NPLEPKV 188
H + GS+T F NP++ V
Sbjct: 402 GHAFSVVRSAGSSTYNFVNPVKRDV 426
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 142 ALLQRQLDVDILISGHTHKFEAYEHE-NKFYINPGSATG 179
AL +R +D+++SGHTH K +I GSA G
Sbjct: 271 ALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAG 309
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 52/132 (39%), Gaps = 28/132 (21%)
Query: 64 DEGTSYPEKKVVTVGQFRIGLCHGHDIIP-WGDPE---------ALALLQRQLDGTSYPE 113
D G Y + TVG IGL IP W PE A +LQ+ L PE
Sbjct: 144 DNGVKYFQVGDQTVG--VIGLTT--QFIPHWEQPEHIQSLTFHSAFEILQQYL-----PE 194
Query: 114 KK-------VVTVGQFRIGLCHGHDI-IPWGDPEALALLQR-QLDVDILISGHTHKFEAY 164
K V G F L G + G+ E A L+ D+DI I+GH H+ A
Sbjct: 195 XKRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAXLEAFSKDIDIFITGHQHRQIAE 254
Query: 165 EHENKFYINPGS 176
+ I PG+
Sbjct: 255 RFKQTAVIQPGT 266
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 106 LDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQ-RQLDVDILISGHTHKFEAY 164
++GT+Y V T+ Q G +D++P G L Q +L V + G H F +
Sbjct: 342 INGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPRNQVVELVVPAGVLGGPHPFHLH 401
Query: 165 EHENKFYINPGSATGAF-NPLEPKV 188
H + GS+T F NP++ V
Sbjct: 402 GHAFSVVRSAGSSTYNFVNPVKRDV 426
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 117 VTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
V + + + HGH L + + D++I GHTH+ E ++ INPG
Sbjct: 86 VEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGE 139
Query: 177 ATG 179
G
Sbjct: 140 CCG 142
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 117 VTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
V + + + HGH L + + D++I GHTH+ E ++ INPG
Sbjct: 111 VEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGE 164
Query: 177 ATG 179
G
Sbjct: 165 CCG 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,480,031
Number of Sequences: 62578
Number of extensions: 334690
Number of successful extensions: 608
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 25
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)